Citrus Sinensis ID: 016989
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | 2.2.26 [Sep-21-2011] | |||||||
| Q86HG0 | 412 | Mannose-1-phosphate guany | yes | no | 0.934 | 0.859 | 0.395 | 2e-84 | |
| Q7SXP8 | 422 | Mannose-1-phosphate guany | yes | no | 0.949 | 0.853 | 0.408 | 3e-84 | |
| Q0VFM6 | 421 | Mannose-1-phosphate guany | yes | no | 0.936 | 0.843 | 0.388 | 5e-81 | |
| Q6GMK8 | 422 | Mannose-1-phosphate guany | no | no | 0.949 | 0.853 | 0.394 | 1e-80 | |
| Q66KG5 | 426 | Mannose-1-phosphate guany | N/A | no | 0.949 | 0.845 | 0.395 | 1e-79 | |
| Q6DKE9 | 421 | Mannose-1-phosphate guany | N/A | no | 0.941 | 0.847 | 0.4 | 2e-79 | |
| Q5XIC1 | 420 | Mannose-1-phosphate guany | yes | no | 0.949 | 0.857 | 0.382 | 3e-76 | |
| Q922H4 | 420 | Mannose-1-phosphate guany | yes | no | 0.949 | 0.857 | 0.380 | 5e-76 | |
| B0CM52 | 420 | Mannose-1-phosphate guany | N/A | no | 0.949 | 0.857 | 0.380 | 2e-75 | |
| Q96IJ6 | 420 | Mannose-1-phosphate guany | yes | no | 0.949 | 0.857 | 0.380 | 3e-75 |
| >sp|Q86HG0|GMPPA_DICDI Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/420 (39%), Positives = 246/420 (58%), Gaps = 66/420 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
A+I+VGGP+KGTRFRPLSL++PK LFP+ G+PM++H I AC K I L+GF++E
Sbjct: 8 AIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESV 67
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
+ ++S S +L + +RY+ E+K G+AG LY+FRD+I+E PS IF+L+ D+CC+FPL
Sbjct: 68 LSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSDICCAFPLN 127
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
++L H+ +G TI+ ++ + A+Q+G LV D T ELLHY EKPETFVS+LINCGVY
Sbjct: 128 DLLQFHKQHGRSCTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKPETFVSNLINCGVY 187
Query: 185 VFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF------------VRLDQ 232
F+P F+ I + L+++ +N+TTD+ +RL+Q
Sbjct: 188 CFSPQFFDVIG---------------KTMIDLKTSGQNITTDYPEITRKGFDVERLRLEQ 232
Query: 233 DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-------- 284
DI PLAG + Y + FW QIK G S+ C LYL F T P +L G
Sbjct: 233 DIFVPLAGTGFISVYPYVGFWRQIKNAGSSVYCQELYLNHFAKTKPEVLKKGNNIIGNVI 292
Query: 285 -DGTKN---ATIIG-DVYVHPSAKI-------------HPTAKENAVVTNAIVGWKSSIG 326
D T + + IIG DVY+ P+ KI K++A + +I+GW+S IG
Sbjct: 293 IDSTASVDPSAIIGPDVYIGPNVKIGKGVRVIHSIILDQTEIKDHACIIYSIIGWQSLIG 352
Query: 327 RWSRVQAEGDF-------NAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
W+R++ ++ + + G+TI G E++V+N IV+P+K L+ + + EIIL
Sbjct: 353 VWARIEGIPNYTPFLYSQDKRRGVTIFGAGAQANGEIIVSNCIVMPHKQLDRNYNNEIIL 412
|
Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3 |
| >sp|Q7SXP8|GMPAB_DANRE Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/428 (40%), Positives = 241/428 (56%), Gaps = 68/428 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEER- 63
A+I++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPND 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++ S E +IP+RYL+E G+ G +Y+FRD I+ P+ FL+N DVC FPL
Sbjct: 64 ELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNADVCSEFPL 123
Query: 124 PEMLDAHRNYG--GMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
EML HR +G G +L + + +G +V + +TNE+LH+ EKP TFVSD+INC
Sbjct: 124 LEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEKPSTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTPDIF I G QR +E ++ E L + + VRL+QDI + LAG+
Sbjct: 184 GIYLFTPDIFAHI-GKVFQRNQQEKIQ-----EELTHGRQ--MPEVVRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPS 301
K+L+ Y+T FW QIK+ G ++ S LYL Q+ T P LA+ G I GDVY+HP+
Sbjct: 236 KKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQG-GTPKITGDVYIHPT 294
Query: 302 AKIHPTA-------------------------------KENAVVTNAIVGWKSSIGRWSR 330
A I P+A +++ V N+IVGW S++G+W+R
Sbjct: 295 ANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVGKWAR 354
Query: 331 VQAE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNV 371
V+ D AK+ ITILG V + EV++ NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGGLTPSITILGCNVNIPSEVIIRNSIVLPHKDLNR 414
Query: 372 SVHQEIIL 379
S +IIL
Sbjct: 415 SFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q0VFM6|GMPPA_XENTR Mannose-1-phosphate guanyltransferase alpha OS=Xenopus tropicalis GN=gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 240/432 (55%), Gaps = 77/432 (17%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PMV H I AC K I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
+ ++ E ++ +RYL+E G+ G +Y+FRD I+ P F++N DVC +FPL
Sbjct: 64 ALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSAFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESAS--QFGELVADPDTNELLHYTEKPETFVSDLINC 181
MLD H+ +GG + +++ +A + +G +VA+ +T E+LHY EKP TFVSD+INC
Sbjct: 124 VPMLDFHKQHGGSQSYVILGTTANRSQSLNYGCIVANGETQEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+F+P IF I V + + L SS++ T+ +RL+QD+ + LAG+
Sbjct: 184 GIYLFSPSIFQHIAEVFQRNQQELQLEENSSWQ---------RTEVIRLEQDVFTTLAGR 234
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNA--TIIGDVYVH 299
+LY Y+T W QIK+ G ++ S LYL+Q+ T P LAS TK TI G+VY+H
Sbjct: 235 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGSTHPERLAS---TKEGGPTIRGNVYIH 291
Query: 300 PSAKIHPTA-------------------------------KENAVVTNAIVGWKSSIGRW 328
P+A + P+A ++++ V N IVGW S++GRW
Sbjct: 292 PTANVDPSAVLGPNVSIGMGVTVGAGVRIRESIVLHGAVLQDHSCVLNTIVGWDSTVGRW 351
Query: 329 SRVQA---------------------EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367
+RV+ EG ITILG V + EVV+ NSIVLP+K
Sbjct: 352 ARVEGTPSDPNPNDPYSKIDSETLFREGKLTPS--ITILGCNVSIPAEVVILNSIVLPHK 409
Query: 368 TLNVSVHQEIIL 379
L+ S +IIL
Sbjct: 410 ELSRSFKNQIIL 421
|
Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q6GMK8|GMPAA_DANRE Mannose-1-phosphate guanyltransferase alpha-A OS=Danio rerio GN=gmppaa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 169/428 (39%), Positives = 242/428 (56%), Gaps = 68/428 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYE-ER 63
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNE 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++S + +I +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSA--ESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
PEMLD + +G + +++ +A + + +G +V + T+E+LHY EKP TFVSD+INC
Sbjct: 124 PEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTP+IF I G Q+ +E L S ++ + +RL+QDI + LAG+
Sbjct: 184 GIYLFTPEIFQHI-GSVFQKNQQEMLLEEQSNGWHRA-------EVIRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPS 301
+LY Y+T FW QIK+ G ++ S LYL Q+ T P LA+ + A G+VY+HP+
Sbjct: 236 GKLYVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLAT-NTEGGAKTRGNVYIHPT 294
Query: 302 AKIHPTA-------------------------------KENAVVTNAIVGWKSSIGRWSR 330
A I PTA ++++ V N+IVGW+S+IG+W+R
Sbjct: 295 ANIDPTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWESTIGKWAR 354
Query: 331 VQAE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNV 371
V+ D AK+ ITILG V + EV++ NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGKLTPSITILGCNVNIPSEVIILNSIVLPHKDLNR 414
Query: 372 SVHQEIIL 379
S +IIL
Sbjct: 415 SFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q66KG5|GMPAB_XENLA Mannose-1-phosphate guanyltransferase alpha-B OS=Xenopus laevis GN=gmppa-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/432 (39%), Positives = 238/432 (55%), Gaps = 72/432 (16%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PMV H I AC K I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
+ ++ E ++ +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESAS--QFGELVADPDTNELLHYTEKPETFVSDLINC 181
MLD H+ +GG + +++ +A +G +V++ DT E+LHY EKP TFVSD+INC
Sbjct: 124 VPMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVSNGDTQEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+F+P IF I V QR E L+ S S+ + T+ +RL+QD+ + LAG
Sbjct: 184 GIYLFSPSIFQHIAEV-FQRNQLE-LQLFSCISEENSSWQR--TEVIRLEQDVFTTLAGH 239
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNA--TIIGDVYVH 299
+LY Y+T W QIK+ G ++ S LYL+Q+ T P LAS TK TI G+VY+H
Sbjct: 240 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYSTTHPERLAS---TKEGGPTIRGNVYIH 296
Query: 300 PSAKIHPTA-------------------------------KENAVVTNAIVGWKSSIGRW 328
P+A + P+A ++++ V N IVGW S +GRW
Sbjct: 297 PTANVDPSAVLGPNVSVGMGVTVGAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVGRW 356
Query: 329 SRVQA---------------------EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367
+RV+ EG ITILG V + EVV+ NSIVLP+K
Sbjct: 357 ARVEGTPSDPNPNDPYSKIDSETLFREGKLTPS--ITILGCNVSIPAEVVILNSIVLPHK 414
Query: 368 TLNVSVHQEIIL 379
L+ S +IIL
Sbjct: 415 ELSRSFKNQIIL 426
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q6DKE9|GMPAA_XENLA Mannose-1-phosphate guanyltransferase alpha-A OS=Xenopus laevis GN=gmppa-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 172/430 (40%), Positives = 240/430 (55%), Gaps = 73/430 (16%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PMV H I AC K I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ E ++ +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ALNSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESAS--QFGELVADPDTNELLHYTEKPETFVSDLINC 181
MLD H+ +GG + +++ +A +G +VA+ DT E+LHY EKP TFVSD+INC
Sbjct: 124 VSMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVANRDTQEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+F+P IF I V Q + L SS++ + + +RL+QD+ S LAG+
Sbjct: 184 GIYLFSPSIFQHIAEVFQQNQQELQLEENSSWQRM---------EVIRLEQDVFSTLAGR 234
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNA--TIIGDVYVH 299
+LY Y+T W QIK+ G ++ S LYL+Q+ T P LAS TK TI G+VY+H
Sbjct: 235 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGTTHPERLAS---TKEGGPTIRGNVYIH 291
Query: 300 PSAKIHPTA-------------------------------KENAVVTNAIVGWKSSIGRW 328
P+A + P+A ++++ V N IVGW S +GRW
Sbjct: 292 PTANVDPSAVLGPNVSIGMGVTVAAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVGRW 351
Query: 329 SRVQ----------------AEGDF-NAKL--GITILGEAVGVEDEVVVTNSIVLPNKTL 369
+RV+ +E F + KL ITILG V + EVV+ NSIVLP+K L
Sbjct: 352 ARVEGTPSDPNPNDPYSKIDSETLFRDGKLTPSITILGCNVSIPAEVVILNSIVLPHKEL 411
Query: 370 NVSVHQEIIL 379
+ S +IIL
Sbjct: 412 SRSFKNQIIL 421
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q5XIC1|GMPPA_RAT Mannose-1-phosphate guanyltransferase alpha OS=Rattus norvegicus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 232/426 (54%), Gaps = 66/426 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
MLDAHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLDAHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDGQLEESPGSWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLAR-HTAGGPRIRGNVYIHPTAK 294
Query: 304 IHPTA-------------------------------KENAVVTNAIVGWKSSIGRWSRVQ 332
+ P+A +E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 333 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 374 HQEIIL 379
+IIL
Sbjct: 415 TNQIIL 420
|
Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q922H4|GMPPA_MOUSE Mannose-1-phosphate guanyltransferase alpha OS=Mus musculus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 162/426 (38%), Positives = 232/426 (54%), Gaps = 66/426 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDGQLEESPGSWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLAR-HTPGGPRIRGNVYIHPTAK 294
Query: 304 IHPTA-------------------------------KENAVVTNAIVGWKSSIGRWSRVQ 332
+ P+A +E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 333 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 374 HQEIIL 379
+IIL
Sbjct: 415 TNQIIL 420
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|B0CM52|GMPPA_PAPAN Mannose-1-phosphate guanyltransferase alpha OS=Papio anubis GN=GMPPA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/426 (38%), Positives = 233/426 (54%), Gaps = 66/426 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ +P F+LN DVC FPL
Sbjct: 64 PLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDGQLEDSPGLWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL++++ T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAK-HTPGGPRIRGNVYIHPTAK 294
Query: 304 IHPTA-------------------------------KENAVVTNAIVGWKSSIGRWSRVQ 332
+ P+A +E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 333 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 374 HQEIIL 379
+IIL
Sbjct: 415 TNQIIL 420
|
Papio anubis (taxid: 9555) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q96IJ6|GMPPA_HUMAN Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/426 (38%), Positives = 233/426 (54%), Gaps = 66/426 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ +P F+LN DVC FPL
Sbjct: 64 PLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDGQLEDSPGLWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL++++ T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAK-HTPGGPWIRGNVYIHPTAK 294
Query: 304 IHPTA-------------------------------KENAVVTNAIVGWKSSIGRWSRVQ 332
+ P+A +E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 333 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPSDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 374 HQEIIL 379
+IIL
Sbjct: 415 TNQIIL 420
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | ||||||
| 224135729 | 415 | predicted protein [Populus trichocarpa] | 0.997 | 0.910 | 0.822 | 0.0 | |
| 255540799 | 415 | mannose-1-phosphate guanyltransferase, p | 0.997 | 0.910 | 0.824 | 0.0 | |
| 297842235 | 415 | ADP-glucose pyrophosphorylase family pro | 0.997 | 0.910 | 0.786 | 0.0 | |
| 15222037 | 415 | ADP-glucose pyrophosphorylase-like prote | 0.997 | 0.910 | 0.786 | 0.0 | |
| 224121622 | 417 | predicted protein [Populus trichocarpa] | 0.997 | 0.906 | 0.796 | 0.0 | |
| 5882732 | 411 | Similar to gb|AF135422 GDP-mannose pyrop | 0.984 | 0.907 | 0.785 | 0.0 | |
| 94962375 | 415 | putative GDP-mannose pyrophosphorylase [ | 0.997 | 0.910 | 0.802 | 0.0 | |
| 225457154 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.910 | 0.800 | 0.0 | |
| 225452650 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.992 | 0.906 | 0.769 | 0.0 | |
| 296087766 | 418 | unnamed protein product [Vitis vinifera] | 0.992 | 0.899 | 0.764 | 0.0 |
| >gi|224135729|ref|XP_002322146.1| predicted protein [Populus trichocarpa] gi|222869142|gb|EEF06273.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/416 (82%), Positives = 362/416 (87%), Gaps = 38/416 (9%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSSE+ +VVAVIMVGGPTKGTRFRPLSLNIPKPLFPL GQPMVHHPISACK+I
Sbjct: 1 MGSSEE-RVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKKIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSISNEL++PVRYLREDKPHGSAG LYNFRDLIMED+PSHIFLLN
Sbjct: 60 YLVGFYEEREFALYVSSISNELKVPVRYLREDKPHGSAGGLYNFRDLIMEDSPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHRTYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IF AIQ VSSQRKDR NLRR+SSFEALQSATR+L TDFVRLDQDI
Sbjct: 180 VSDRINCGVYVFTPEIFTAIQDVSSQRKDRANLRRISSFEALQSATRSLPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFR TSP+LLA GDG+K ATI+
Sbjct: 240 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRFTSPHLLAGGDGSKTATIVD 299
Query: 295 DVYVHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKS 323
DVY+HPSAK+HPTAK ENAVV ++IVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARIGPGARLICCIILDDVEVMENAVVIHSIVGWKS 359
Query: 324 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
SIGRWSRVQAEGD+NAKLG+TILGEAV VEDEVVV NSIVLPNKTLNVSV +EIIL
Sbjct: 360 SIGRWSRVQAEGDYNAKLGVTILGEAVTVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540799|ref|XP_002511464.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] gi|223550579|gb|EEF52066.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/416 (82%), Positives = 359/416 (86%), Gaps = 38/416 (9%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS D+KVVAVIMVGGPTKGTRFRPLSLN+ KPLFPL GQPMVHHPISACKRI
Sbjct: 1 MGSS-DEKVVAVIMVGGPTKGTRFRPLSLNVAKPLFPLAGQPMVHHPISACKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSISNEL+IPVRYLREDKPHGSAG LYNFRDLIMED+PSHIFLLN
Sbjct: 60 YLVGFYEEREFALYVSSISNELKIPVRYLREDKPHGSAGGLYNFRDLIMEDSPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEMLDAHR YGGMGTILVIKVSAESASQFGEL+ADP T ELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLDAHRRYGGMGTILVIKVSAESASQFGELIADPVTKELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVYVFTPDIF AIQGVSSQRKDR NLRRVSSFEALQS TR+L TDFVRLDQDI
Sbjct: 180 VSDLINCGVYVFTPDIFTAIQGVSSQRKDRANLRRVSSFEALQSTTRSLPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQ YTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDG+K+ATI+G
Sbjct: 240 LSPLAGKKQFYTYETSDFWEQIKTPGMSLKCSALYLAQFRYTSPHLLASGDGSKSATIVG 299
Query: 295 DVYVHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKS 323
DVY+HPSAK+HPTAK ENAVV +AI+GWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGARLISCIILDDVEVMENAVVIHAILGWKS 359
Query: 324 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
SIGRWSRVQA GDFN+KLGITILGEAV VEDEVVV NSIVLPNKTLNVSV +EIIL
Sbjct: 360 SIGRWSRVQAAGDFNSKLGITILGEAVCVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842235|ref|XP_002888999.1| ADP-glucose pyrophosphorylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334840|gb|EFH65258.1| ADP-glucose pyrophosphorylase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/416 (78%), Positives = 358/416 (86%), Gaps = 38/416 (9%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS ++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPEMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPATNELLHYTEKPETF 180
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLT+P LLASGDGT++A +IG
Sbjct: 240 LSPLAGKKQLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTAPQLLASGDGTRSAIVIG 299
Query: 295 DVYVHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKS 323
DVY+HPSAK+HPTAK ENAVVTNAIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLISCIILDDVEIMENAVVTNAIVGWKS 359
Query: 324 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
SIGRWSRVQAEG +N+KLG+TILG++V VEDEVVVT+ IVLPNKTLNVSV EIIL
Sbjct: 360 SIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSCIVLPNKTLNVSVQDEIIL 415
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222037|ref|NP_177629.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] gi|30699054|ref|NP_849886.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] gi|12323882|gb|AAG51908.1|AC013258_2 putative GDP-mannose pyrophosphorylase; 64911-67597 [Arabidopsis thaliana] gi|13937224|gb|AAK50104.1|AF372967_1 At1g74910/F9E10_24 [Arabidopsis thaliana] gi|21700877|gb|AAM70562.1| At1g74910/F9E10_24 [Arabidopsis thaliana] gi|332197525|gb|AEE35646.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] gi|332197527|gb|AEE35648.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/416 (78%), Positives = 359/416 (86%), Gaps = 38/416 (9%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS ++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLP+ML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETF 180
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKK+LYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLTSP LLASGDGT++A +IG
Sbjct: 240 LSPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIG 299
Query: 295 DVYVHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKS 323
DVY+HPSAK+HPTAK ENAVVTNAIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKS 359
Query: 324 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
SIGRWSRVQAEG +N+KLG+TILG++V VEDEVVVT+SIVLPNKTLNVSV EIIL
Sbjct: 360 SIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 415
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121622|ref|XP_002318629.1| predicted protein [Populus trichocarpa] gi|222859302|gb|EEE96849.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/418 (79%), Positives = 355/418 (84%), Gaps = 40/418 (9%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSSE+ +VVAVIMVGGPTKGTRFRPLSL+IPKPLFPL GQPMVHHPISACK+I
Sbjct: 1 MGSSEE-RVVAVIMVGGPTKGTRFRPLSLDIPKPLFPLAGQPMVHHPISACKKIPNLTQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSISNEL++ VRYLREDKPHGSAG L+NFRDLIMEDNPSHIFLLN
Sbjct: 60 YLVGFYEEREFALYVSSISNELKVSVRYLREDKPHGSAGGLFNFRDLIMEDNPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHRAYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNL--TTDFVRLDQ 232
VSD INCGVYVFTP+IF AIQGVSSQRKDR NLRRVSSFEALQ +TR+L TD+VRLDQ
Sbjct: 180 VSDRINCGVYVFTPEIFTAIQGVSSQRKDRANLRRVSSFEALQFSTRHLHLPTDYVRLDQ 239
Query: 233 DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATI 292
DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQF+ TSP+LLA GDG+K+ATI
Sbjct: 240 DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFQFTSPHLLAGGDGSKSATI 299
Query: 293 IGDVYVHPSAKIHPTAK-------------------------------ENAVVTNAIVGW 321
GDVY+HPSAK+HPTAK ENAVV +IVGW
Sbjct: 300 EGDVYIHPSAKVHPTAKIGPNVSISANARIGPGARLIRCIILDNVEVMENAVVIYSIVGW 359
Query: 322 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
SSIGRWSRVQA D+NAKLG+TILGE V VEDEVVV NSIVLP KTL+VSV EIIL
Sbjct: 360 NSSIGRWSRVQASCDYNAKLGVTILGEGVTVEDEVVVINSIVLPYKTLDVSVQDEIIL 417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5882732|gb|AAD55285.1|AC008263_16 Similar to gb|AF135422 GDP-mannose pyrophosphorylase A (GMPPA) from Homo sapiens. ESTs gb|AA712990, gb|N65247, gb|N38149, gb|T04179, gb|Z38092, gb|T76473, gb|N96403, gb|AA394551 and gb|AA728527 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/411 (78%), Positives = 355/411 (86%), Gaps = 38/411 (9%)
Query: 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGF 59
++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI YLVGF
Sbjct: 2 EEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQIYLVGF 61
Query: 60 YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
YEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLNCDVCC
Sbjct: 62 YEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLNCDVCC 121
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI 179
SFPLP+ML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETFVSD I
Sbjct: 122 SFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETFVSDRI 181
Query: 180 NCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239
NCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDILSPLA
Sbjct: 182 NCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDILSPLA 240
Query: 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVH 299
GKK+LYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLTSP LLASGDGT++A +IGDVY+H
Sbjct: 241 GKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIGDVYIH 300
Query: 300 PSAKIHPTAK-------------------------------ENAVVTNAIVGWKSSIGRW 328
PSAK+HPTAK ENAVVTNAIVGWKSSIGRW
Sbjct: 301 PSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKSSIGRW 360
Query: 329 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
SRVQAEG +N+KLG+TILG++V VEDEVVVT+SIVLPNKTLNVSV EIIL
Sbjct: 361 SRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 411
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|94962375|gb|ABF48494.1| putative GDP-mannose pyrophosphorylase [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/416 (80%), Positives = 358/416 (86%), Gaps = 38/416 (9%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MG SE+ +VVAVIMVGGPTKGTRFRPLSLNIPKPLFPL GQPMVHHPISACKRI
Sbjct: 1 MGISEE-RVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFA YVS+ISNELR+PVRYLREDKPHGSAG LYNFRDL+MED+P+HIFLLN
Sbjct: 60 YLVGFYEEREFAWYVSAISNELRVPVRYLREDKPHGSAGGLYNFRDLVMEDDPTHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGG+GT+LVIKVSAESASQFGELVADPDT ELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHRRYGGIGTLLVIKVSAESASQFGELVADPDTKELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVYVFTP+IF AIQGVSSQ KDR NLRRVSSFEALQSATR+ DFVRLDQDI
Sbjct: 180 VSDLINCGVYVFTPEIFTAIQGVSSQLKDRANLRRVSSFEALQSATRSFPADFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDG+K+ATI+G
Sbjct: 240 LSPLAGKKQLYTYETRDFWEQIKTPGMSLKCSSLYLAQFRFTSPHLLASGDGSKSATIVG 299
Query: 295 DVYVHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKS 323
DVY+HPSAK+HPTAK ENAVV N+IVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKLGPNVSISANARIGPGARLISCIILDDVEVMENAVVINSIVGWKS 359
Query: 324 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
SIG+WSRVQAEG +NAKLG+TILGEAV VEDEVVV NSIVLP+KTLNVSV +EIIL
Sbjct: 360 SIGKWSRVQAEGVYNAKLGVTILGEAVTVEDEVVVVNSIVLPHKTLNVSVQEEIIL 415
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457154|ref|XP_002283703.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha isoform 1 [Vitis vinifera] gi|297733847|emb|CBI15094.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/416 (80%), Positives = 357/416 (85%), Gaps = 38/416 (9%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSSE+ +VVAVIMVGGPTKGTRFRPLSLN PKPLFPL GQPMVHHPIS CKRI
Sbjct: 1 MGSSEE-RVVAVIMVGGPTKGTRFRPLSLNTPKPLFPLAGQPMVHHPISGCKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSIS+ELR+PVRYL+EDKPHGSAG LYNFRDLIMEDNPSHI LLN
Sbjct: 60 YLVGFYEEREFALYVSSISSELRVPVRYLKEDKPHGSAGGLYNFRDLIMEDNPSHIVLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AH YGGMGTILVIKVSAESASQFGELVADP TNELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHIRYGGMGTILVIKVSAESASQFGELVADPVTNELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVY+FTPDIF AIQGVS+QRK+R +LRR+SSFEALQSATR+L DFVRLDQDI
Sbjct: 180 VSDLINCGVYIFTPDIFTAIQGVSTQRKERADLRRLSSFEALQSATRSLPKDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYETM FWEQIKTPGMSLKCS LYL+Q++ T PNLLASGDGTK+ATIIG
Sbjct: 240 LSPLAGKKQLYTYETMGFWEQIKTPGMSLKCSALYLSQYQFTFPNLLASGDGTKSATIIG 299
Query: 295 DVYVHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKS 323
+VY+HPSAK+HPTAK ENAVV +AIVGWKS
Sbjct: 300 NVYIHPSAKVHPTAKIGPNVSISANARIGAGVRLISCVILDDVEIKENAVVIHAIVGWKS 359
Query: 324 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
S+G+WSRVQA GD+NAKLGITILGEAV VEDEVVV NSIVLPNKTLNVSV +EIIL
Sbjct: 360 SVGKWSRVQAGGDYNAKLGITILGEAVAVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452650|ref|XP_002281959.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/413 (76%), Positives = 345/413 (83%), Gaps = 37/413 (8%)
Query: 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLV 57
S ++KVVAVIMVGGPTKGTRFRPLS N KPLFPL GQPMVHHPISACKRI +LV
Sbjct: 3 SSEEKVVAVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQIFLV 62
Query: 58 GFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDV 117
GFYEERE ALYVSS+SNEL++P+RYL+EDKPHGSAG LY FRD+IMED PSHIFLLNCDV
Sbjct: 63 GFYEERELALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLNCDV 122
Query: 118 CCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSD 177
CC+FPLP+ML HR GGMGT+LVIKVSAESA+QFGELVADP TNELLHY EKPETFVSD
Sbjct: 123 CCTFPLPDMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETFVSD 182
Query: 178 LINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237
LINCGVYVFTPDIF AIQGVS+ R+DR +LRRVSSFEALQSATR TDFVRLDQDILSP
Sbjct: 183 LINCGVYVFTPDIFTAIQGVSTHREDRASLRRVSSFEALQSATRTHPTDFVRLDQDILSP 242
Query: 238 LAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVY 297
LAGKKQLYTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDGTK+ATI+GDVY
Sbjct: 243 LAGKKQLYTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVGDVY 302
Query: 298 VHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKSSIG 326
+HPSAK+HPTAK ENAVV +AIVGWKS IG
Sbjct: 303 IHPSAKVHPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKSFIG 362
Query: 327 RWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
+WSRVQAEGD+NAKLGI I+GE+V VEDEVVV NSIVLPNKTLN SV +EIIL
Sbjct: 363 KWSRVQAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSVQEEIIL 415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087766|emb|CBI35022.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/416 (76%), Positives = 345/416 (82%), Gaps = 40/416 (9%)
Query: 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLV 57
S ++KVVAVIMVGGPTKGTRFRPLS N KPLFPL GQPMVHHPISACKRI +LV
Sbjct: 3 SSEEKVVAVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQIFLV 62
Query: 58 GFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDV 117
GFYEERE ALYVSS+SNEL++P+RYL+EDKPHGSAG LY FRD+IMED PSHIFLLNCDV
Sbjct: 63 GFYEERELALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLNCDV 122
Query: 118 CCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSD 177
CC+FPLP+ML HR GGMGT+LVIKVSAESA+QFGELVADP TNELLHY EKPETFVSD
Sbjct: 123 CCTFPLPDMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETFVSD 182
Query: 178 LINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237
LINCGVYVFTPDIF AIQGVS+ R+DR +LRRVSSFEALQSATR TDFVRLDQDILSP
Sbjct: 183 LINCGVYVFTPDIFTAIQGVSTHREDRASLRRVSSFEALQSATRTHPTDFVRLDQDILSP 242
Query: 238 LAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVY 297
LAGKKQLYTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDGTK+ATI+GDVY
Sbjct: 243 LAGKKQLYTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVGDVY 302
Query: 298 VHPSAKIHPTAK-------------------------------ENAVVTNAIVGWKSSIG 326
+HPSAK+HPTAK ENAVV +AIVGWKS IG
Sbjct: 303 IHPSAKVHPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKSFIG 362
Query: 327 RWSRVQA---EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 379
+WSRVQA EGD+NAKLGI I+GE+V VEDEVVV NSIVLPNKTLN SV +EIIL
Sbjct: 363 KWSRVQASLAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSVQEEIIL 418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | ||||||
| TAIR|locus:2027201 | 415 | AT1G74910 [Arabidopsis thalian | 0.841 | 0.768 | 0.826 | 2.4e-168 | |
| TAIR|locus:2049188 | 406 | AT2G04650 [Arabidopsis thalian | 0.781 | 0.729 | 0.778 | 3.2e-149 | |
| ZFIN|ZDB-GENE-040426-1550 | 422 | gmppab "GDP-mannose pyrophosph | 0.817 | 0.734 | 0.444 | 3.7e-72 | |
| ASPGD|ASPL0000047492 | 439 | AN1911 [Emericella nidulans (t | 0.828 | 0.715 | 0.408 | 2.6e-69 | |
| UNIPROTKB|G4N495 | 440 | MGG_05936 "Uncharacterized pro | 0.831 | 0.715 | 0.415 | 4.2e-69 | |
| ZFIN|ZDB-GENE-040704-37 | 422 | gmppaa "GDP-mannose pyrophosph | 0.815 | 0.732 | 0.424 | 1.1e-68 | |
| DICTYBASE|DDB_G0271858 | 412 | gmppA "mannose-1-phosphate gua | 0.815 | 0.75 | 0.417 | 2.8e-66 | |
| UNIPROTKB|E1BEN4 | 420 | GMPPA "Uncharacterized protein | 0.817 | 0.738 | 0.413 | 3.7e-66 | |
| RGD|1560644 | 420 | Gmppa "GDP-mannose pyrophospho | 0.817 | 0.738 | 0.407 | 1.3e-65 | |
| MGI|MGI:1916330 | 420 | Gmppa "GDP-mannose pyrophospho | 0.817 | 0.738 | 0.404 | 2e-65 |
| TAIR|locus:2027201 AT1G74910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1412 (502.1 bits), Expect = 2.4e-168, Sum P(2) = 2.4e-168
Identities = 272/329 (82%), Positives = 300/329 (91%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS ++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLP+ML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETF 180
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKK+LYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLTSP LLASGDGT++A +IG
Sbjct: 240 LSPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIG 299
Query: 295 DVYVHPSAKIHPTAK--ENAVVT-NAIVG 320
DVY+HPSAK+HPTAK N ++ NA VG
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVG 328
|
|
| TAIR|locus:2049188 AT2G04650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1254 (446.5 bits), Expect = 3.2e-149, Sum P(2) = 3.2e-149
Identities = 242/311 (77%), Positives = 269/311 (86%)
Query: 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGF 59
++KVVAVIMVGGPTKGTRFRPLS N PKPL PL GQPM+HHPISACK+I +L+GF
Sbjct: 3 EEKVVAVIMVGGPTKGTRFRPLSFNTPKPLIPLAGQPMIHHPISACKKISNLAQIFLIGF 62
Query: 60 YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
YEEREFALYVSSISNEL+IPVRYL+EDKPHGSAGALY FRD IME+ PSH+FLLNCDVCC
Sbjct: 63 YEEREFALYVSSISNELKIPVRYLKEDKPHGSAGALYYFRDRIMEEKPSHVFLLNCDVCC 122
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI 179
SFPL +LDAHR YGG+GT+LVIKVSAE+ASQFGEL+ADPDT ELLHYTEKPETFVSDLI
Sbjct: 123 SFPLQGILDAHRRYGGIGTMLVIKVSAEAASQFGELIADPDTKELLHYTEKPETFVSDLI 182
Query: 180 NCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239
NCGVYVFT DIFNAI+ V SQ +D S++ QSATR++ DFVRLDQDILSPLA
Sbjct: 183 NCGVYVFTSDIFNAIEEVYSQIRDTS-----SNY---QSATRSVPADFVRLDQDILSPLA 234
Query: 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGT-KNATIIGDVYV 298
GKKQLYTYE DFWEQIKTPG SLKCS LYL+QFR TSP++LASGDGT + TIIGDVY+
Sbjct: 235 GKKQLYTYENKDFWEQIKTPGKSLKCSALYLSQFRETSPHILASGDGTNRKPTIIGDVYI 294
Query: 299 HPSAKIHPTAK 309
HPS K+HPTAK
Sbjct: 295 HPSVKLHPTAK 305
|
|
| ZFIN|ZDB-GENE-040426-1550 gmppab "GDP-mannose pyrophosphorylase Ab" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 147/331 (44%), Positives = 202/331 (61%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEER- 63
A+I++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPND 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++ S E +IP+RYL+E G+ G +Y+FRD I+ P+ FL+N DVC FPL
Sbjct: 64 ELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGG--MGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
EML HR +G G +L + + +G +V + +TNE+LH+ EKP TFVSD+INC
Sbjct: 124 LEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEKPSTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTPDIF I G QR +E ++ E L R + + VRL+QDI + LAG+
Sbjct: 184 GIYLFTPDIFAHI-GKVFQRNQQEKIQ-----EELTHG-RQMP-EVVRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPS 301
K+L+ Y+T FW QIK+ G ++ S LYL Q+ T P LA+ G I GDVY+HP+
Sbjct: 236 KKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQGG-TPKITGDVYIHPT 294
Query: 302 AKIHPTAKENAVVTNAIVGWKSSIGRWSRVQ 332
A I P+A + N +G +IG RV+
Sbjct: 295 ANIDPSA---VLGPNVSIGKGVTIGGGVRVR 322
|
|
| ASPGD|ASPL0000047492 AN1911 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 137/335 (40%), Positives = 205/335 (61%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGFYEERE 64
A+I+VGGP++GTRFRPLSL++PKPLF + G P++HH + A ++ L+G+Y+E
Sbjct: 20 AIILVGGPSRGTRFRPLSLDVPKPLFEVAGHPIIHHCLKALAKVPELHEVILIGYYDETV 79
Query: 65 FALYVSSISNEL-RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
F ++ + E + + YLRE G+AG LY+FRD I++ P IF+LN DVCCSFPL
Sbjct: 80 FRDFIKDSAKEFPQFRISYLREYTALGTAGGLYHFRDPILKGKPERIFVLNADVCCSFPL 139
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
EML IL +V ++A+ FG +V+D T +LHY EKPE+ +S+LINCGV
Sbjct: 140 GEMLRLFEEKDAEAVILGTRVHNDAATNFGCIVSDSHTKRVLHYVEKPESHISNLINCGV 199
Query: 184 YVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSA----TRNLTTDFVRLDQDILSPL 238
Y+F + IF +I+ +R R L S + L+++ + T+ +RL+QDILS L
Sbjct: 200 YLFATECIFPSIRSTIKRRTTRPRLLSYPSSDNLEASFVADDDSERTEVLRLEQDILSDL 259
Query: 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ-FRLTSPNLLASGDGTKNATIIGDVY 297
A + + +ET DFW QIKT G ++ + LYL + F+ S L A +ATI+ VY
Sbjct: 260 ADSNRFFVHETKDFWRQIKTAGSAVPANALYLQKAFQAQSEELAAP-----SATIVPPVY 314
Query: 298 VHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQ 332
+HP+A + PTAK + N +G ++ +G +RV+
Sbjct: 315 IHPTASVDPTAK---LGPNVSIGPRAIVGAGARVK 346
|
|
| UNIPROTKB|G4N495 MGG_05936 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 140/337 (41%), Positives = 205/337 (60%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK------RIYLVGFYEERE 64
AVI+VGG ++GTRFRPLSL++PKPLF + G P++ H ++A +YL+G+Y+E
Sbjct: 18 AVILVGGSSRGTRFRPLSLDVPKPLFDVAGHPIIWHCLTAISTVPSIHEVYLIGYYDESV 77
Query: 65 FALYVSSISNEL-RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
F ++ S E + ++YLRE + G+AG LY+FRD I++ P +F+LN DVCCSFPL
Sbjct: 78 FRDFIKDSSTEFPNLSIKYLREYQALGTAGGLYHFRDAILKGRPERLFVLNSDVCCSFPL 137
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
EML IL +V E+A+ FG +V+D + +LHY EKPE+ +S+LINCGV
Sbjct: 138 NEMLKMFTEKDAEAVILGTRVGEEAATNFGCIVSDNHSRRVLHYVEKPESQISNLINCGV 197
Query: 184 YVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD-------FVRLDQDIL 235
Y+F+ + IF +I+ +R DR L S E L+++ D +RL+QDIL
Sbjct: 198 YLFSTEAIFPSIRSAIKRRTDRPRLSSYRSSENLEASFIEYADDDEGSKNEVIRLEQDIL 257
Query: 236 SPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGD 295
S +A KQ + YET DFW QIKT G ++ + LYL Q LA+ +A II
Sbjct: 258 SDMADTKQFFVYETQDFWRQIKTAGSAVPANALYLQQAWQGGSKELAA----PSANIIPP 313
Query: 296 VYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQ 332
V++HPSA + PTAK + N +G ++++G +RV+
Sbjct: 314 VFIHPSATVDPTAK---LGPNVSIGPRATVGPGARVK 347
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| ZFIN|ZDB-GENE-040704-37 gmppaa "GDP-mannose pyrophosphorylase Aa" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 141/332 (42%), Positives = 200/332 (60%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYE-ER 63
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNE 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++S + +I +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSA--ESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
PEMLD + +G + +++ +A + + +G +V + T+E+LHY EKP TFVSD+INC
Sbjct: 124 PEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTP+IF I V Q+ +E L S A + +RL+QDI + LAG+
Sbjct: 184 GIYLFTPEIFQHIGSVF-QKNQQEMLLEEQS-NGWHRA------EVIRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-DGTKNATIIGDVYVHP 300
+LY Y+T FW QIK+ G ++ S LYL Q+ T P LA+ +G A G+VY+HP
Sbjct: 236 GKLYVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLATNTEG--GAKTRGNVYIHP 293
Query: 301 SAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQ 332
+A I PTA + N +G +IG RV+
Sbjct: 294 TANIDPTA---VLGPNVSIGTGVTIGAGVRVR 322
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| DICTYBASE|DDB_G0271858 gmppA "mannose-1-phosphate guanylyltransferase alpha" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 137/328 (41%), Positives = 204/328 (62%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
A+I+VGGP+KGTRFRPLSL++PK LFP+ G+PM++H I AC K I L+GF++E
Sbjct: 8 AIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESV 67
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
+ ++S S +L + +RY+ E+K G+AG LY+FRD+I+E PS IF+L+ D+CC+FPL
Sbjct: 68 LSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSDICCAFPLN 127
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
++L H+ +G TI+ ++ + A+Q+G LV D T ELLHY EKPETFVS+LINCGVY
Sbjct: 128 DLLQFHKQHGRSCTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKPETFVSNLINCGVY 187
Query: 185 VFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
F+P F+ I + + + +N+ + + + + + +RL+QDI PLAG
Sbjct: 188 CFSPQFFDVIGKTMIDLKTSGQNI--TTDYPEI--TRKGFDVERLRLEQDIFVPLAGTGF 243
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+ Y + FW QIK G S+ C LYL F T P +L G+ IIG+V + +A
Sbjct: 244 ISVYPYVGFWRQIKNAGSSVYCQELYLNHFAKTKPEVLKKGNN-----IIGNVIIDSTAS 298
Query: 304 IHPTAKENAVVTNAIVGWKSSIGRWSRV 331
+ P+A + + +G IG+ RV
Sbjct: 299 VDPSA---IIGPDVYIGPNVKIGKGVRV 323
|
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| UNIPROTKB|E1BEN4 GMPPA "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 136/329 (41%), Positives = 195/329 (59%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +P+RYL+E P G+ G LY+FRD I+ +P F+LN DVC FPL
Sbjct: 64 PLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
MLD HR+ +L + + +G +V +P T+E+LHY EKP TFVSD+INCG+
Sbjct: 124 SAMLDVHRHQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ SS + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDGQLEDSSGLWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL+Q++LT P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSQYQLTHPERLAKHT-PGGPRIRGNVYIHPTAK 294
Query: 304 IHPTAKENAVVTNAIVGWKSSIGRWSRVQ 332
+ P+A + N +G +IG R++
Sbjct: 295 VAPSA---VLGPNVSIGEGVTIGEGVRLR 320
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| RGD|1560644 Gmppa "GDP-mannose pyrophosphorylase A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 134/329 (40%), Positives = 192/329 (58%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
MLDAHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLDAHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ E + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDG-----QLEESPGSWPGAGT--IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTAG-GPRIRGNVYIHPTAK 294
Query: 304 IHPTAKENAVVTNAIVGWKSSIGRWSRVQ 332
+ P+A + N +G +IG R++
Sbjct: 295 VAPSA---VLGPNVSIGKGVTIGEGVRLR 320
|
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| MGI|MGI:1916330 Gmppa "GDP-mannose pyrophosphorylase A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
Identities = 133/329 (40%), Positives = 192/329 (58%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ E + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDG-----QLEESPGSWPGAGT--IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHT-PGGPRIRGNVYIHPTAK 294
Query: 304 IHPTAKENAVVTNAIVGWKSSIGRWSRVQ 332
+ P+A + N +G +IG R++
Sbjct: 295 VAPSA---VLGPNVSIGKGVTIGEGVRLR 320
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q922H4 | GMPPA_MOUSE | 2, ., 7, ., 7, ., 1, 3 | 0.3802 | 0.9498 | 0.8571 | yes | no |
| O60064 | YBB2_SCHPO | 2, ., 7, ., 7, ., 1, 3 | 0.3495 | 0.9155 | 0.8381 | yes | no |
| Q7SXP8 | GMPAB_DANRE | 2, ., 7, ., 7, ., 1, 3 | 0.4088 | 0.9498 | 0.8530 | yes | no |
| Q96IJ6 | GMPPA_HUMAN | 2, ., 7, ., 7, ., 1, 3 | 0.3802 | 0.9498 | 0.8571 | yes | no |
| Q9Y725 | MPG11_CANGA | 2, ., 7, ., 7, ., 1, 3 | 0.3004 | 0.8469 | 0.8891 | yes | no |
| Q86HG0 | GMPPA_DICDI | 2, ., 7, ., 7, ., 1, 3 | 0.3952 | 0.9340 | 0.8592 | yes | no |
| Q0VFM6 | GMPPA_XENTR | 2, ., 7, ., 7, ., 1, 3 | 0.3888 | 0.9366 | 0.8432 | yes | no |
| Q5XIC1 | GMPPA_RAT | 2, ., 7, ., 7, ., 1, 3 | 0.3826 | 0.9498 | 0.8571 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.921 |
| 3rd Layer | 2.7.7.13 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pm.C_LG_XV0175 | hypothetical protein (416 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 379 | |||
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 1e-144 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 2e-51 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-50 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 1e-49 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 5e-32 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 3e-28 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 6e-28 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 8e-26 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 3e-24 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 6e-20 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 3e-16 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 5e-16 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 6e-16 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-15 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 7e-14 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 1e-13 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 2e-13 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 3e-13 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 6e-13 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 2e-11 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 1e-09 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 3e-09 | |
| cd04197 | 217 | cd04197, eIF-2B_epsilon_N, The N-terminal domain o | 1e-08 | |
| TIGR01099 | 260 | TIGR01099, galU, UTP-glucose-1-phosphate uridylylt | 1e-08 | |
| COG1210 | 291 | COG1210, GalU, UDP-glucose pyrophosphorylase [Cell | 6e-08 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 6e-08 | |
| cd05824 | 80 | cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate | 1e-07 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 2e-06 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 3e-06 | |
| pfam12804 | 178 | pfam12804, NTP_transf_3, MobA-like NTP transferase | 3e-06 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 3e-05 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 5e-05 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 1e-04 | |
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 2e-04 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 2e-04 | |
| cd02516 | 218 | cd02516, CDP-ME_synthetase, CDP-ME synthetase is i | 4e-04 | |
| PRK09451 | 456 | PRK09451, glmU, bifunctional N-acetylglucosamine-1 | 7e-04 | |
| COG4750 | 231 | COG4750, LicC, CTP:phosphocholine cytidylyltransfe | 7e-04 | |
| PRK14358 | 481 | PRK14358, glmU, bifunctional N-acetylglucosamine-1 | 8e-04 | |
| COG2266 | 177 | COG2266, COG2266, GTP:adenosylcobinamide-phosphate | 0.001 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 0.001 | |
| TIGR02623 | 254 | TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti | 0.002 | |
| cd04183 | 231 | cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv | 0.003 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 410 bits (1055), Expect = e-144
Identities = 137/265 (51%), Positives = 179/265 (67%), Gaps = 14/265 (5%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI+VGGP KGTRFRPLSL++PKPLFP+ G+PM+HH I AC K + L+GFY E
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
F+ ++S E +P+RYL+E KP G+AG LY+FRD I+ NPS F+LN DVCC FPL
Sbjct: 61 FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
E+L+ H+ +G GTIL + S E AS +G +V DP T E+LHY EKPETFVSDLINCGVY
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180
Query: 185 VFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQL 244
+F+P+IF+ I+ R+ L R + +RL+QD+L+PLAG +L
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEAQLG--------DDNNREGRAEVIRLEQDVLTPLAGSGKL 232
Query: 245 YTYETMDFWEQIKTPGMSLKCSGLY 269
Y Y+T DFW QIKT G ++ + LY
Sbjct: 233 YVYKTDDFWSQIKTAGSAIYANRLY 257
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N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 2e-51
Identities = 94/265 (35%), Positives = 133/265 (50%), Gaps = 39/265 (14%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
A+I+VGG GTR RPL+L +PKPL +PM+ H I A K I L Y +
Sbjct: 3 ALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
++ +L I + + E +P G+AG L RDL+ +D+ F+LN DV C FPL E
Sbjct: 61 VPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDD-EPFFVLNSDVICDFPLAE 119
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+LD H+ +G GTILV KV E S++G +V D +T + + EKP+ FV + IN G+Y+
Sbjct: 120 LLDFHKKHGAEGTILVTKV--EDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYI 177
Query: 186 FTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245
P + + I LR S ++++I +A + QLY
Sbjct: 178 LNPSVLDRIP-----------LRPTS------------------IEKEIFPKMASEGQLY 208
Query: 246 TYETMDFWEQIKTPGMSLKCSGLYL 270
YE FW I P LK LYL
Sbjct: 209 AYELPGFWMDIGQPKDFLKGMSLYL 233
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 1e-50
Identities = 103/374 (27%), Positives = 169/374 (45%), Gaps = 60/374 (16%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEERE 64
AVI+ GG GTR RPL+ + PKPL P+ G+P++ + + A I L VG+ E+
Sbjct: 4 AVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQI 61
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
+ L + + Y+ E +P G+AGAL N DL+ D+ +LN DV L
Sbjct: 62 EEYF--GDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDD---FLVLNGDVLTDLDLS 116
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKP--ETFVSDLINCG 182
E+L+ H+ G + TI + +V S+FG + D ++ + EKP E S+LIN G
Sbjct: 117 ELLEFHKKKGALATIALTRV--LDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAG 174
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
+Y+F P++F+ I+ +R D E ++L LA K
Sbjct: 175 IYIFDPEVFDYIE--KGERFDFEE--------------------------ELLPALAAKG 206
Query: 243 Q-LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-DGTKNATIIGDVYVHP 300
+ +Y Y +W I TP L+ + L L + + ++A IIG V + P
Sbjct: 207 EDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGP 266
Query: 301 SAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360
AKI P A + ++G +IG ++ +I+ + V + + +
Sbjct: 267 GAKIGPGAL---IGPYTVIGEGVTIGN----------GVEIKNSIIMDNVVIGHGSYIGD 313
Query: 361 SIVLPNKTLNVSVH 374
SI+ N + S+
Sbjct: 314 SIIGENCKIGASLI 327
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 1e-49
Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREF 65
AVI+ G KGTR RPL+ PKPL P+ G+P++ + I R I LV Y +
Sbjct: 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQI 58
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
Y S + + Y+ +++P G+AGA+ N D + +D ++N DV L E
Sbjct: 59 EEYFGDGSK-FGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSE 114
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+L HR G TI V +V E S++G + D D + + EKP S+L N G+Y+
Sbjct: 115 LLRFHREKGADATIAVKEV--EDPSRYGVVELD-DDGRVTRFVEKPTLPESNLANAGIYI 171
Query: 186 FTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245
F P+I + I E L R D + L + ++Y
Sbjct: 172 FEPEILDYI---------PEILPRGEDEL-----------------TDAIPLLIEEGKVY 205
Query: 246 TYETMDFWEQI 256
Y +W I
Sbjct: 206 GYPVDGYWLDI 216
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-32
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 22/233 (9%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFP-LGGQPMVHHPISAC------KRIYLVGFYEER 63
A+I+ GG GTR PL+ + KPL P L PM+ + +S + I +
Sbjct: 2 AIILAGG--SGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRF 59
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
A + S + + V Y + +P G+A A+ D + +D+P + +L D
Sbjct: 60 LVAEQLGDGS-KFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDF 118
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFV-SDLINCG 182
E + R GT+ V E + +G + D + ++ + EKP+ S+ + G
Sbjct: 119 EEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFD-ENGRVIRFVEKPDLPKASNYASMG 177
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSF--EALQSATR--NLTTDFVRLD 231
+Y F +F + K + L R +A+ +A +L F+
Sbjct: 178 IYFFNSGVFLFLA------KYLKELARGEDEITDAIPAALEDGDLDLAFLFRG 224
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-28
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
+I+ GG KGTR RPL+ PK L P+ G+P++ + I + I +V E
Sbjct: 3 GLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ S + + Y+ +++P G A A+ RD + D P ++L D +
Sbjct: 61 KEALGDGSR-FGVRITYILQEEPLGLAHAVLAARDFL-GDEPFVVYL--GDNLIQEGISP 116
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
++ +IL+ +V E +FG VA D ++ EKP+ S+L GVY
Sbjct: 117 LVRDFLEEDADASILLAEV--EDPRRFG--VAVVDDGRIVRLVEKPKEPPSNLALVGVYA 172
Query: 186 FTPDIFNAI 194
FTP IF+AI
Sbjct: 173 FTPAIFDAI 181
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-28
Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 71/366 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFYEEREF 65
AVI+ G KGTR RPL+ PKP+ P+ G+P++ H I A + V Y + +
Sbjct: 3 AVILAAG--KGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
Y S +P+ Y+ +++ G+A AL + ++ + +D +LN DV L E
Sbjct: 61 REYFGDGS-RGGVPIEYVVQEEQLGTADALGSAKEYV-DDE---FLVLNGDVLLDSDLLE 115
Query: 126 -MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
++ A I V++V + S +G + D + EKPE S+LIN G+Y
Sbjct: 116 RLIRAEAP-----AIAVVEV--DDPSDYGVVET--DGGRVTGIVEKPENPPSNLINAGIY 166
Query: 185 VFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
+F+P+IF ++ S R + E LT D L L + +
Sbjct: 167 LFSPEIFELLEKTKLSPRGEYE-----------------LT--------DALQLLIDEGK 201
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGT--KNATIIGDVYVHPS 301
+ E FW + P L + L NL +GT +N TI G V +
Sbjct: 202 VKAVELDGFWLDVGRPWDLLDANEALLD-------NLEPRIEGTVEENVTIKGPVVIGEG 254
Query: 302 AKIHPTAKENAVVTN-AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360
A I + + +G IG + ++ T++G V + + V + N
Sbjct: 255 AVI----RSGTYIEGPVYIGKNCDIGPNAYIR---------PYTVIGNNVHIGNAVEIKN 301
Query: 361 SIVLPN 366
SI++
Sbjct: 302 SIIMEG 307
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 8e-26
Identities = 65/247 (26%), Positives = 100/247 (40%), Gaps = 49/247 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-- 62
AVI+ GG GTR R + ++PKPL P+ G+P + + + R + VG+ E
Sbjct: 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQI 58
Query: 63 REFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
E+ I + Y+ E +P G+ GA+ N + ED +LN D
Sbjct: 59 EEYFGD----GYRGGIRIYYVIEPEPLGTGGAIKNALPKLPED---QFLVLNGDTYFDVD 111
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCG 182
L +L A R G T+ + +V AS++G + D D ++ + EK LIN G
Sbjct: 112 LLALLAALRASGADATMALRRV--PDASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGG 168
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
VY+ +I I S EA D+L L +
Sbjct: 169 VYLLRKEILAEIP------------ADAFSLEA-----------------DVLPALVKRG 199
Query: 243 QLYTYET 249
+LY +E
Sbjct: 200 RLYGFEV 206
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 3e-24
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
VIM GG KGTR RPL+ N PKP+ +GG+P++ I R GF R F + V+
Sbjct: 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETII---DRFIAQGF---RNFYISVN 52
Query: 71 SISNELR----------IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS 120
++ + + + Y+REDKP G+AGAL L+ E ++N D+ +
Sbjct: 53 YLAEMIEDYFGDGSKFGVNISYVREDKPLGTAGAL----SLLPEKPTDPFLVMNGDILTN 108
Query: 121 FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE-TFVSDLI 179
+LD H+ T+ V + + +G V + + + EKP +F L+
Sbjct: 109 LNYEHLLDFHKENNADATVCVREYEVQVP--YG--VVETEGGRITSIEEKPTHSF---LV 161
Query: 180 NCGVYVFTPDIFNAI 194
N G+YV P++ + I
Sbjct: 162 NAGIYVLEPEVLDLI 176
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 6e-20
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 47/221 (21%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEERE 64
AV++ G G+RF PL+ +IPK L P+ P++ + + ++ + + +
Sbjct: 3 AVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 65 FALYVSSISNELRIPVR----YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS 120
+ S + L + + G A L + R LI S LL+CD+ +
Sbjct: 61 IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLI----RSDFLLLSCDLVSN 116
Query: 121 FPLPEMLDA----HRNYGGMGTILVIKVSAES--ASQFGE----LVADPDTNELL--HYT 168
PL E+L+ +N +++ S S+ E + D T LL HY
Sbjct: 117 IPLSELLEERRKKDKNA-IATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYE 175
Query: 169 EKPE------------------TFVSDLINCGVYVFTPDIF 191
E + T +DL++C +Y+ +PD+
Sbjct: 176 EDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-16
Identities = 86/395 (21%), Positives = 159/395 (40%), Gaps = 73/395 (18%)
Query: 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFY 60
V+A+I+ GG +G+R PL+ + KP P GG+ ++ +S C +RI ++ Y
Sbjct: 4 KNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQY 61
Query: 61 EEREFALYVSS--------ISNELRIPVRYLREDKPH---GSAGALYNFRDLIMEDNPSH 109
+ ++ + + I RE G+A A+Y +I +P +
Sbjct: 62 KSHSLNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEY 121
Query: 110 IFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTE 169
+ +L+ D +MLD H G T+ V +V E AS+FG + D + ++ + E
Sbjct: 122 VLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVD-ENGRIIEFVE 180
Query: 170 KP--ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT-- 225
KP + L + G+Y+F D+ E L+ ++ +
Sbjct: 181 KPADGPPSNSLASMGIYIFNTDLL---------------------KELLEEDAKDPNSSH 219
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD 285
DF +DI+ L + ++Y YE +W + T + Y A L SP +
Sbjct: 220 DF---GKDIIPKLLERGKVYAYEFSGYWRDVGT----ID--SYYEANMDLLSPQPELNLY 270
Query: 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 345
+N I P AK ++ V+N++V I + + ++
Sbjct: 271 D-RNWPIYTKNKNLPPAKF----VNDSEVSNSLVAGGCII------------SGTVENSV 313
Query: 346 LGEAVGVEDEVVVTNSIVLPNKTL--NVSVHQEII 378
L V + V+ NS+++P+ + + + II
Sbjct: 314 LFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAII 348
|
Length = 393 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-16
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 49/221 (22%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYE--------- 61
AVI+ GG G+R PL+ NIPK L P+ +PM+ +P+ ++ GF +
Sbjct: 3 AVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA---GFEDVIVVVPEEE 57
Query: 62 EREFALYVSSISNELRIPVRYLRE--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
+ E + Y+ S L+ + + D+ G+A +L + R I +D +L+CD+
Sbjct: 58 QAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIKKD----FLVLSCDLIT 113
Query: 120 SFPLPEMLDAHRNYGGMGTIL-------VIKVSAESASQFGE---LVADPDTNELLHYTE 169
PL E++D HR++ T+L + + S+ + ++ + + L +
Sbjct: 114 DLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEKTQRLLFIT 173
Query: 170 KPE-------------------TFVSDLINCGVYVFTPDIF 191
E T + L++ VY+F +
Sbjct: 174 SEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 6e-16
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEER-E 64
VI+ GG GTR RPL+ +PK L P+ +PM+++P+ I +V E++
Sbjct: 3 GVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
F + S + + + Y + +P G A A+ D + +D+ L D L
Sbjct: 61 FKELLGDGS-DFGVDITYAVQPEPDGLAHAVLIAEDFVGDDD---FVLYLGDNIFQDGLS 116
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
E+L+ G TIL+ +V + S++G + D D +++ EKP+ S+L G+Y
Sbjct: 117 ELLEHFAEEGSGATILLYEV--DDPSRYGVVEFDED-GKVIGLEEKPKEPKSNLAVTGLY 173
Query: 185 VFTPDIFNAIQGVS-SQRKDRE 205
+ P +F AI+ + S R + E
Sbjct: 174 FYDPSVFEAIKQIKPSARGELE 195
|
Length = 286 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 79/398 (19%), Positives = 145/398 (36%), Gaps = 85/398 (21%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYEERE 64
A+++ GG G+R PL+ KP P GG+ ++ P+S C +RI ++ Y+
Sbjct: 1 AMVLAGGR--GSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHS 58
Query: 65 FALYVSS------ISNELRIPVR-YLREDKPH---GSAGALYNFRDLIMEDNPSHIFLLN 114
++ + + RE G+A A+Y DLI + +P ++ +L+
Sbjct: 59 LNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILS 118
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKP--- 171
D +MLD H G TI I V + AS+FG + D D ++ + EKP
Sbjct: 119 GDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDED-GRIVDFEEKPANP 177
Query: 172 ETFVSD----LINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT-- 225
+ L + G+Y+F D++ L E L+ + +
Sbjct: 178 PSIPGMPDFALASMGIYIF----------------DKDVL-----KELLEEDADDPESSH 216
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT---------------PGMSL--KCSGL 268
DF + DI+ + + Y +W + T P L + +
Sbjct: 217 DFGK---DIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPI 273
Query: 269 YLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHP------TAKENAVVTNAIVGWK 322
Y L + S ++ + + + H + V ++++
Sbjct: 274 YTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD 333
Query: 323 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360
IGR A + I+ + V + + VV+ N
Sbjct: 334 VGIGR----------GAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 7e-14
Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 23/185 (12%)
Query: 21 GTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREF--------ALYVSSI 72
GTR RPL+ PKPL P+ G+P++ H + G R + +
Sbjct: 10 GTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAA---AGI---RRIVVNTHHLADQIEAHL 63
Query: 73 SNELR-IPVRYLREDK-PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAH 130
+ + + E + G + L+ ++ ++N D+ L +L H
Sbjct: 64 GDSRFGLRITISDEPDELLETGGGIKKALPLLGDEP---FLVVNGDILWDGDLAPLLLLH 120
Query: 131 RNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDI 190
+L+ V + G+ D D V+ G+ + +P++
Sbjct: 121 AWRMDALLLLLPLVRNPGHNGVGDFSLDAD----GRLRRGGGGAVAPFTFTGIQILSPEL 176
Query: 191 FNAIQ 195
F I
Sbjct: 177 FAGIP 181
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 88/376 (23%), Positives = 144/376 (38%), Gaps = 57/376 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGFYEERE 64
A+I+ G KGTR RPL+ PK L P+ +P++ + I +VG E
Sbjct: 2 ALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEE 59
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
V + Y+ + +P G A A+Y RD + D+ ++L D +
Sbjct: 60 IKEIVGEGER-FGAKITYIVQGEPLGLAHAVYTARDFLG-DDDFVVYL--GDNLIQDGIS 115
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
+ + IL+ KV + FG V + D +L EKP+ S+L G+Y
Sbjct: 116 RFVKSFEEKDYDALILLTKV--RDPTAFGVAVLE-DGKRILKLVEKPKEPPSNLAVVGLY 172
Query: 185 VFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
+F P IF AI+ + S R + E +T D + L K
Sbjct: 173 MFRPLIFEAIKNIKPSWRGELE-----------------IT--------DAIQWLIEKGY 207
Query: 244 LYTYETMD-FWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSA 302
+ +W+ P L + L L + + D +K I G V V A
Sbjct: 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDE---VEREVQGVDDESK---IRGRVVVGEGA 261
Query: 303 KIHPTA-------KENAVVTNAIVGWKSSIGRWSRVQ-AEGDFNAKL-GITILGEAVGVE 353
KI + E+ ++ N+ +G +SIG ++ AE + + L I G +
Sbjct: 262 KIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIV 321
Query: 354 DEVVVTNSIVLPNKTL 369
D V+ + N+
Sbjct: 322 DSVIGKKVRIKGNRRR 337
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 61/288 (21%), Positives = 101/288 (35%), Gaps = 94/288 (32%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLV-GF---------- 59
VI+ GG GTR + PKP+ +GG+P++ H + +IY G
Sbjct: 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIM----KIYSHYGHNDFILCLGYK 54
Query: 60 ----------YEEREFALYVSSISNELRIPVRYLREDKPHGSA----------------- 92
Y + + +N + + H S
Sbjct: 55 GHVIKEYFLNYFLHNSDVTIDLGTNRIEL----------HNSDIEDWKVTLVDTGLNTMT 104
Query: 93 -GALYNFRDLIMEDNPSHIFLLN-CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESAS 150
G L R + +D F+L D + +++ HR++G + T+ +
Sbjct: 105 GGRLKRVRRYLGDDET---FMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH----PPG 157
Query: 151 QFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRV 210
+FGEL D D ++ +TEKP+ IN G +V P++F+ I G
Sbjct: 158 RFGELDLDDD-GQVTSFTEKPQG-DGGWINGGFFVLEPEVFDYIDGDD------------ 203
Query: 211 SSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT 258
T F R + L LA +L Y+ FW+ + T
Sbjct: 204 --------------TVFER---EPLERLAKDGELMAYKHTGFWQCMDT 234
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 98/395 (24%), Positives = 165/395 (41%), Gaps = 76/395 (19%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR--IYLVGF---YE 61
+++A+I+ GG +GTR L+ NI KP P GG+ ++ +S C I VG Y+
Sbjct: 3 EMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ 60
Query: 62 EREFALYVSS--------ISNELRIPVRYLREDKPH---GSAGALYNFRDLIMEDNPSHI 110
E ++ I+ + I Y + G+A A+Y D I + +P ++
Sbjct: 61 PLELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYV 120
Query: 111 FLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK 170
+L+ D +MLD H+ TI VI+V E AS+FG + D + ++ + EK
Sbjct: 121 LILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDEN-MRIVEFEEK 179
Query: 171 PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT--DFV 228
P+ S+L + G+Y+F L+ E L +N + DF
Sbjct: 180 PKNPKSNLASMGIYIFNWKR----------------LK-----EYLIEDEKNPNSSHDF- 217
Query: 229 RLDQDIL-SPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSP-NLLASGDG 286
++++ L ++LY Y +W+ + T L+ A L P N L D
Sbjct: 218 --GKNVIPLYLEEGEKLYAYPFKGYWKDVGT------IESLWEANMELLRPENPLNLFD- 268
Query: 287 TKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDF-NAKLGITI 345
+N I P I AK V N++V EG + ++
Sbjct: 269 -RNWRIYSVNPNLPPQYIAENAK----VKNSLV-------------VEGCVVYGTVEHSV 310
Query: 346 LGEAVGVEDEVVVTNSIVLPNKTL--NVSVHQEII 378
L + V V + VV +S+++P + NV + + II
Sbjct: 311 LFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAII 345
|
Length = 380 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 6e-13
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 35/211 (16%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
AVI+ G KGTR + S ++PK L PL G+PM+ H + A RI +V + +
Sbjct: 1 AVILAAG--KGTRMK--S-DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQV 55
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL-- 123
+++ V ++ +++ G+ A+ + + + +L DV PL
Sbjct: 56 KKALAN------PNVEFVLQEEQLGTGHAVKQALPALKDFE-GDVLVLYGDV----PLIT 104
Query: 124 PE----MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTE----KPETFV 175
PE +L+AHR G T+L + E + +G ++ D ++L E E
Sbjct: 105 PETLQRLLEAHREAGADVTVLTAE--LEDPTGYGRIIRD-GNGKVLRIVEEKDATEEEKA 161
Query: 176 SDLINCGVYVF-TPDIFNAIQGVSSQRKDRE 205
+N G+Y F +F A+ +++ E
Sbjct: 162 IREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 45/221 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLVG------- 58
AVI G GTRF P + IPK + P+ +P++ + + + + I +V
Sbjct: 3 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60
Query: 59 --------FYEER-------EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103
EE + V IS+ I Y+R+ +P G A+ + I
Sbjct: 61 EDHFDRSYELEETLEKKGKTDLLEEVRIISDLANI--HYVRQKEPLGLGHAVLCAKPFI- 117
Query: 104 EDNPSHIF--LLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159
D P F LL D+ S L ++++A+ G I V +V E S++G + +
Sbjct: 118 GDEP---FAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIAVEEVPPEDVSKYGIVKGEK 173
Query: 160 DTNELLHYT---EKP--ETFVSDLINCGVYVFTPDIFNAIQ 195
++ EKP E S+L G YV TPDIF+ ++
Sbjct: 174 IDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILE 214
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLV-GFYEE-- 62
A+I+ G +G+R RPL+ + PK L + G+P++ I K I +V G+ +E
Sbjct: 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQI 58
Query: 63 REFA---LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
E + + N Y + +LY RD + ED LL DV
Sbjct: 59 EELLKKYPNIKFVYNP-----DYAET----NNIYSLYLARDFLDED----FLLLEGDV-- 103
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDL- 178
P +L+ + ILV K + E ++ + + D L + ++
Sbjct: 104 -VFDPSILERLLSSPADNAILVDKKTKEWEDEYVKDLDDAGV---LLGIISKAKNLEEIQ 159
Query: 179 -INCGVYVFTPDIFNAI 194
G+ F+P+ + +
Sbjct: 160 GEYVGISKFSPEDADRL 176
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 34/195 (17%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLV-GFYE 61
+ AVI+ G KGTR + ++PK L P+ G+PM+ H I A + I +V G
Sbjct: 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGA 56
Query: 62 EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF 121
E+ +++ R V ++ +++ G+ A+ + +D + +L DV
Sbjct: 57 EQ----VREALAE--RDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDV---- 106
Query: 122 PL------PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK----P 171
PL E+L AH +G T+L + + +G +V D + E+ E+
Sbjct: 107 PLITAETLEELLAAHPAHGAAATVLT--AELDDPTGYGRIVRDGN-GEVTAIVEEKDASE 163
Query: 172 ETFVSDLINCGVYVF 186
E IN G+Y F
Sbjct: 164 EEKQIKEINTGIYAF 178
|
Length = 460 |
| >gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 66/232 (28%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR--IYLVGFYEEREFA 66
+ AV++ + RFRPL+ P+ L PL P++ + + + E
Sbjct: 1 LQAVVL--ADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVE--------EVF 50
Query: 67 LYVSSISNELRIPVRYLREDKPHG--------------SAG-ALYNFRDLIMEDNP---- 107
++ S S++++ + + KP S G AL RDL D
Sbjct: 51 VFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDAL---RDL---DAKGLIR 104
Query: 108 SHIFLLNCDVCCSFPLPEMLDAHR-----NYGGMGTILVIKVSAESASQFGE----LVAD 158
L++ DV + L E+L+ H+ + + T+++ + S ++ + D
Sbjct: 105 GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVD 164
Query: 159 PDTNELLHYTEKP----ETFVS----------------DLINCGVYVFTPDI 190
P T+ LLHY E P + DL++C + + +PD+
Sbjct: 165 PKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV 216
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217 |
| >gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 45/220 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLVGFYEER-- 63
AVI G GTRF P + IPK + P+ +P++ + + + + I +V +R
Sbjct: 3 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60
Query: 64 ----------EFAL----------YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103
E L V SI + Y+R+ + G A+ +
Sbjct: 61 EDHFDTSYELEHQLEKTNKEELLKEVRSIIP--LATIFYVRQKEQKGLGHAVLCAEPFVG 118
Query: 104 EDNPSHIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161
++ +L D+C S L +M+D + YG I V +V E S++G V D +
Sbjct: 119 DE--PFAVILGDDICVSEEPVLKQMIDLYEKYGC-SIIAVEEVPKEEVSKYG--VIDGEG 173
Query: 162 NELLHY-----TEKP--ETFVSDLINCGVYVFTPDIFNAI 194
E Y EKP E S+L G YV TPDIF +
Sbjct: 174 VEEGVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELL 213
|
Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260 |
| >gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 6e-08
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 46/221 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLV-------- 57
AVI G GTRF P + IPK + P+ +P++ + + + + I +V
Sbjct: 7 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64
Query: 58 -----------GFYEER---EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103
E+R E V SI + I ++R+ +P G A+ + +
Sbjct: 65 EDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTI--SFVRQKEPLGLGHAVLCAKPFV- 121
Query: 104 EDNPSHIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161
+ LL D+ S L +M++ + GG I V +V E S++G V DP
Sbjct: 122 -GDEPFAVLLPDDLVDSEKPCLKQMIELYEETGG-SVIGVEEVPPEDVSKYG--VIDPGE 177
Query: 162 ---NELLHYT---EKP--ETFVSDLINCGVYVFTPDIFNAI 194
+ EKP E S+L G YV TP+IF+ +
Sbjct: 178 PVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDIL 218
|
Length = 291 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 31/210 (14%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYE------ERE 64
+I+ GG GTR PL+ + K L P+ +PM+++P+S L G E +
Sbjct: 3 GIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLM---LAGIREILIISTPED 57
Query: 65 FALYVSSISN--ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS-----HIFLLNCDV 117
L+ + + +L I + Y + KP G A A + I +D +IF
Sbjct: 58 LPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQ--- 114
Query: 118 CCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVS 176
L +L T+ +V+ ++G V + D N +L EKP+ S
Sbjct: 115 ----GLSPILQRAAAQKEGATVFGYEVN--DPERYG--VVEFDENGRVLSIEEKPKKPKS 166
Query: 177 DLINCGVYVFTPDIFNAIQGVS-SQRKDRE 205
+ G+Y + D+F + + S R + E
Sbjct: 167 NYAVTGLYFYDNDVFEIAKQLKPSARGELE 196
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-07
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 22/80 (27%)
Query: 288 KNATIIGDVYVHPSAKIHP-------------TAKENAVVTNAIVGWKSSIGRWSRVQAE 334
K A I +V + P+ I T ++++ V ++IVGW S++GRW+R++
Sbjct: 10 KTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLE-- 67
Query: 335 GDFNAKLGITILGEAVGVED 354
+T+LG+ V ++D
Sbjct: 68 -------NVTVLGDDVTIKD 80
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 43/214 (20%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
KV+A+++ GG +G R PL+ + KP P GG ++ +S RIY++ Y+
Sbjct: 5 KVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK 62
Query: 62 E-----------REFAL---YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107
R L Y++ + + R+ R+ GSA A+Y +LI +++P
Sbjct: 63 SHSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYL-----GSADAIYQSLNLIEDEDP 117
Query: 108 SHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHY 167
++ + D +M+D H G T+ I+V E AS FG + DPD + +
Sbjct: 118 DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPD-GRIRGF 176
Query: 168 TEKP-----------ETFVSDLINCGVYVFTPDI 190
EKP E S G YVFT D
Sbjct: 177 LEKPADPPGLPDDPDEALAS----MGNYVFTTDA 206
|
Length = 407 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 58/221 (26%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLV-GFYEER- 63
VI+ G KGTR + ++PK L PL G+PM+ H I A ++I++V G E+
Sbjct: 3 VVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
AL V ++ + + G+ A+ + +D + +L DV PL
Sbjct: 58 RKALA--------NRDVNWVLQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDV----PL 103
Query: 124 ------PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD------------TNELL 165
+L+AHR G T+L K + +G ++ + D E
Sbjct: 104 ISAETLERLLEAHRQNG--ITLLTAK--LPDPTGYGRIIRENDGKVTAIVEDKDANAEQK 159
Query: 166 HYTEKPETFVSDLINCGVYVFT-PDIFNAIQGVSSQRKDRE 205
E IN GVYVF + + +S+ E
Sbjct: 160 AIKE---------INTGVYVFDGAALKRWLPKLSNNNAQGE 191
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 26/114 (22%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI----SACKRIYLVGFYEEREFA 66
VI+ GG + +R K L PLGG+P++ + A + +V E A
Sbjct: 1 GVILAGG--RSSRM-----GGDKALLPLGGKPLLERVLDRLRPAGDEVVVVTNRPEIAAA 53
Query: 67 LYVSSISNELRIPVRYLREDKPH-GSAGALYNFRDLIME--DNPSHIFLLNCDV 117
L + V + + P G L + + + +L CD+
Sbjct: 54 L--------AGLGVPVVPDPDPGQGPLAGLA----AGLRAAPDADAVLVLACDM 95
|
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 33/160 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYEERE 64
A+I+ GG +GTR PL+ KP P GG+ ++ P+S + + ++ Y+ R
Sbjct: 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSR- 57
Query: 65 FALYVSSISNELRI-----------------PVRYLREDKPHGSAGALYNFRDLIMEDNP 107
S+++ L P + D G+A A+Y D I +P
Sbjct: 58 ------SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDP 111
Query: 108 SHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147
++ +L+ D + EMLD H G T+ V K S
Sbjct: 112 EYVLILSGDHIYNMDYREMLDFHIESGADITV-VYKASMG 150
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 40/218 (18%)
Query: 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLV-GFY 60
+ + A+I+ G KGTR + ++ K + PL G+PMV P++A RI LV G
Sbjct: 2 NNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQ 56
Query: 61 EEREFALYVSSISNELRIPVRYLREDKPHG-------SAGALYNFRDLIMEDNPSHIFLL 113
E+ + V + +++ G +A AL F ++ +L
Sbjct: 57 AEKVREHFAG------DGDVSFALQEEQLGTGHAVACAAPALDGFSGTVL--------IL 102
Query: 114 NCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK- 170
DV L ML AHR G T+L ++ E+ +G +V D D L EK
Sbjct: 103 CGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRDADGRVLRIVEEKD 160
Query: 171 --PETFVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRE 205
PE +N G+Y +F+AI + + E
Sbjct: 161 ATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198
|
Length = 459 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
+V+A+I+ GG GTR PL+ KP PL G+ ++ PIS C +IY++
Sbjct: 3 RVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVL---- 56
Query: 62 EREF--ALYVSSISNELRIP------VRYL----REDKP---HGSAGALYNFRDLIMEDN 106
+F A IS V L + P G+A A+ + E +
Sbjct: 57 -TQFNSASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWD 115
Query: 107 PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLH 166
+L+ D + HR G T+ V+ V + AS FG + D D +
Sbjct: 116 VDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTD-DDGRITE 174
Query: 167 YTEKP 171
++EKP
Sbjct: 175 FSEKP 179
|
Length = 429 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 57/270 (21%), Positives = 96/270 (35%), Gaps = 93/270 (34%)
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKP----------ETF 174
+ + HR G TI + V AS FG L+ DT ++ ++EKP +T
Sbjct: 140 DFVQKHRESGADITIACLPVDESRASDFG-LMKIDDTGRIIEFSEKPKGDELKAMQVDTT 198
Query: 175 VSDL-----------INCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223
V L + G+YVF D+ L R A
Sbjct: 199 VLGLSPEEAKEKPYIASMGIYVFKKDVL-------------LKLLRWRFPTA-------- 237
Query: 224 TTDFVRLDQDILSPLAGKK--QLYTYETMDFWEQIKTPG------MSLKCSG-----LYL 270
DF +I+ P A K+ + Y +WE I T ++L Y
Sbjct: 238 -NDFGS---EII-PGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLAL-TKQPPKFSFYD 291
Query: 271 AQFRL-TSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWS 329
+ TSP L P +KI E+ +T++I+ +
Sbjct: 292 PDAPIYTSPRFL------------------PPSKI-----EDCRITDSIISHGCFLRE-C 327
Query: 330 RVQAEGDFNAKLGI-TILGEAVGVEDEVVV 358
+++ ++ +G+ + +GE V +ED V++
Sbjct: 328 KIE-----HSVVGLRSRIGEGVEIEDTVMM 352
|
Length = 436 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 51/218 (23%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLV---- 57
+A+I+ GG +G+R + L+ KP GG+ ++ +S C +RI ++
Sbjct: 15 DTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK 72
Query: 58 ------------GFYEEREFALYVSSISNELRIPVRYLREDKPH---GSAGALYNFRDLI 102
F+ E E +V + + R+ D+ + G+A A+Y D+I
Sbjct: 73 AHSLIRHIQRGWSFFRE-ELGEFVDLLPAQQRV-------DEENWYRGTADAVYQNLDII 124
Query: 103 MEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162
+P ++ +L D ML H G T+ ++V E AS FG + D + +
Sbjct: 125 RRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVD-END 183
Query: 163 ELLHYTEKPE-----------TFVSDLINCGVYVFTPD 189
+ + EKP + S G+YVF D
Sbjct: 184 RITAFVEKPANPPAMPGDPDKSLAS----MGIYVFNAD 217
|
Length = 425 |
| >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYEE 62
V A+I+ G G+R +IPK LGG+P++ H + A I +V ++
Sbjct: 1 VAAIILAAG--SGSRM---GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDD 55
Query: 63 REFALYVSSISNELRIPV 80
+ A ++ + +
Sbjct: 56 IDLAKELAKYGLSKVVKI 73
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 |
| >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLV 57
VI+ G KGTR + ++PK L L G+PMV H I A ++LV
Sbjct: 8 VVILAAG--KGTR---MYSDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLV 54
|
Length = 456 |
| >gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI 48
A+I+ G G+RF PL+ + PK L + G+P++ I
Sbjct: 3 AIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQI 38
|
Length = 231 |
| >gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 8e-04
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 28/187 (14%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFY--EERE 64
VI+ G +GTR + +PK L P+ G+PMV + A + +I +V + E+ E
Sbjct: 11 VILAAG--QGTRMKSA---LPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVE 65
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-- 122
AL S V + R+++ G+ A + + E + + I +L D P
Sbjct: 66 AALQGSG--------VAFARQEQQLGTGDAFLSGASALTEGD-ADILVLYGDTPLLRPDT 116
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI--- 179
L ++ HR G TIL ++ A+ +G +V D +K T I
Sbjct: 117 LRALVADHRAQGSAMTILTGELP--DATGYGRIVRGADGAVERIVEQKDATDAEKAIGEF 174
Query: 180 NCGVYVF 186
N GVYVF
Sbjct: 175 NSGVYVF 181
|
Length = 481 |
| >gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIP-KPLFPLGGQPMVHHPISA----CKRIYLV 57
++A+IM GG +GTR + P KPL + G+P++ + A I +
Sbjct: 1 MMAIIMAGG--RGTR-----MGRPEKPLLEVCGKPLIDRVLEALRKIVDEIIVA 47
|
Length = 177 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.001
Identities = 38/185 (20%), Positives = 82/185 (44%), Gaps = 12/185 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QNGTAISLEEKPLQPKSNYAVTGLYF 178
Query: 186 FTPDI 190
+ D+
Sbjct: 179 YDNDV 183
|
Length = 292 |
| >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 59/280 (21%), Positives = 102/280 (36%), Gaps = 80/280 (28%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLV------------- 57
AVI+ GG GTR + PKP+ +GG+P++ H + IY
Sbjct: 2 AVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMK----IYSHHGINDFIICCGYK 55
Query: 58 GFYEEREFA---LYVSSISNELRI-----------PVRYLREDKPHGS--AGALYNFRDL 101
G+ + FA L++S ++ + P R D + G L R+
Sbjct: 56 GYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREY 115
Query: 102 IMEDNPSHIFLLNC-DVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160
+ ++ F D + ++ HR +G T+ + + +FG L + +
Sbjct: 116 LDDEA----FCFTYGDGVADIDIKALIAFHRKHGKKATV----TAVQPPGRFGALDLEGE 167
Query: 161 TNELLHYTEKPETFVSD--LINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQS 218
+ + EKP D IN G +V P + + I G + + +E
Sbjct: 168 Q--VTSFQEKPL---GDGGWINGGFFVLNPSVLDLIDGDA------------TVWE---- 206
Query: 219 ATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT 258
Q+ L LA + +L YE FW+ + T
Sbjct: 207 -------------QEPLETLAQRGELSAYEHSGFWQPMDT 233
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 22/185 (11%)
Query: 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFY------EER 63
+ + M G G+RF+ PKPL + G+PM+ I + +I+ F
Sbjct: 1 IIIPMAG---LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNT 57
Query: 64 EFALYVSSISNELRIPVRYLREDKPH--GSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF 121
+F L S L P + E G+A + DLI D+P + + NCD
Sbjct: 58 KFHLDESLK---LLAPNATVVELDGETLGAACTVLLAADLIDNDDP--LLIFNCDQIVES 112
Query: 122 PLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
L L A R G +L S S + +L + E EK +SDL
Sbjct: 113 DLLAFLAAFRERDLDGGVLTFFSSHPRWS-YVKLDENGRVIE---TAEK--EPISDLATA 166
Query: 182 GVYVF 186
G+Y F
Sbjct: 167 GLYYF 171
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 99.98 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 99.98 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.97 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.97 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.96 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.95 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.95 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.95 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.93 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.93 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.92 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.92 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.92 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.9 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.89 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.89 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.87 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.84 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.82 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.81 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.73 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.69 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.61 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.55 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.55 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.54 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.53 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.53 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.53 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.53 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.52 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.5 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.49 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.46 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.41 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.38 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.38 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.37 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.35 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.32 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.31 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.31 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.28 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.27 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.26 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.23 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.21 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 99.19 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.18 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.15 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.14 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.14 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.12 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.08 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.08 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.05 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.04 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.02 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.01 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.98 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.98 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 98.98 | |
| PLN02296 | 269 | carbonate dehydratase | 98.97 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.97 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.95 | |
| PLN02472 | 246 | uncharacterized protein | 98.95 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.95 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.94 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.94 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 98.92 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.9 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.9 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.9 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.89 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 98.89 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 98.86 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.86 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.83 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.83 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.83 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 98.82 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.81 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.81 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.8 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 98.8 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.79 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.79 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.78 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.78 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.78 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.77 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.76 | |
| PLN02472 | 246 | uncharacterized protein | 98.76 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.75 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.75 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.74 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.72 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.71 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.7 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.7 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.69 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.69 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.68 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.67 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.67 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.67 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.67 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.67 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 98.67 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.66 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.66 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.65 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.65 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.64 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.63 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.62 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.61 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.61 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.61 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.61 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.6 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.59 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.59 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.58 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.58 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.57 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.57 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.56 | |
| PLN02296 | 269 | carbonate dehydratase | 98.56 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.55 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.55 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.55 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.54 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.53 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.52 | |
| PLN02357 | 360 | serine acetyltransferase | 98.5 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.49 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.49 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.49 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.46 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.45 | |
| PLN02739 | 355 | serine acetyltransferase | 98.45 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.41 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.4 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.4 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.39 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.39 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.38 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.38 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.38 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.37 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.37 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.37 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.37 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.36 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.34 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.34 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.34 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.34 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.33 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.32 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.31 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.3 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.3 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.27 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.26 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.26 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.25 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.24 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.23 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.22 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.22 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.22 | |
| PLN02357 | 360 | serine acetyltransferase | 98.21 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.19 | |
| PLN02739 | 355 | serine acetyltransferase | 98.18 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.18 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.16 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.15 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.15 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.13 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.1 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.09 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.08 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.07 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.05 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.03 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.01 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.0 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.0 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.99 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.98 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 97.96 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.95 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.95 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.93 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.92 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 97.91 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 97.9 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.77 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.71 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 97.7 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.68 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.67 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.65 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 97.6 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.41 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.33 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.3 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.28 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.23 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.22 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.21 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.17 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.09 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.05 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.04 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.76 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.3 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 96.03 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 95.24 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 94.82 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 94.6 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 93.35 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 91.6 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 90.99 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 89.72 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 89.31 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 88.01 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 87.76 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 86.83 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 86.33 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 86.33 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 85.74 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 84.6 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 84.51 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 84.4 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 84.11 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 84.04 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 83.12 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 81.56 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 81.14 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 80.98 |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=386.39 Aligned_cols=366 Identities=61% Similarity=1.014 Sum_probs=317.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++||||.||+|+||||+||..+.||||+||+|+|||+|.|+.+.+ |++++.++++.+.+|+......+.+.+.
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvr 81 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVR 81 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchh
Confidence 5799999999999999999999999999999999999999999987 9999999888899999988888999999
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
|..++.++||++.|+.-++.+-...|+.+++++||..+++.|++|++.|.+.+...++++++....++.+||.++.|+++
T Consensus 82 YL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t 161 (407)
T KOG1460|consen 82 YLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPST 161 (407)
T ss_pred hhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCc
Confidence 99999999999999999998876678899999999999999999999999999999999999988889999999999889
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|+.+.|||...-++.+++|+|+|++++|+.+.+....+.+-.. ...+...+++ .+.||..|+.|++..|+.+
T Consensus 162 ~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~--~~~~~~~l~~----g~~d~irLeqDvlspLag~ 235 (407)
T KOG1460|consen 162 GEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLE--VEKDLPLLQP----GPADFIRLEQDVLSPLAGS 235 (407)
T ss_pred CceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhh--hhhcccccCC----CccceEEeechhhhhhcCC
Confidence 999999999999999999999999999999999877644322010 0112223333 3789999999999999999
Q ss_pred ceEEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCCC-----------------CCCCeEEecCeEECCCcEE
Q 016989 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD-----------------GTKNATIIGDVYVHPSAKI 304 (379)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~i~~~~~i 304 (379)
.++++|..+++|.++.|+..-+.|+++|+++++...+..+..++ .+++++|+|+|.||.+++|
T Consensus 236 k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrv 315 (407)
T KOG1460|consen 236 KQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRV 315 (407)
T ss_pred CceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCcee
Confidence 99999999999999999999999999999999876666554332 1466777777777777777
Q ss_pred CCCCC-------------CCcEEeceEECCCCEECCCcEEeecccccc----cccceEECCCcEECCCcEEeccEECCCc
Q 016989 305 HPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAEGDFNA----KLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 305 ~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~----~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
++|++ +++.|-+|+||..|.||..++|...-+..+ .+.-+++|+.|.+++.|.|.||++.++-
T Consensus 316 g~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k 395 (407)
T KOG1460|consen 316 GPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNK 395 (407)
T ss_pred cCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCC
Confidence 77776 788888899999999999998877655422 2334899999999999999999999999
Q ss_pred eecccccccccC
Q 016989 368 TLNVSVHQEIIL 379 (379)
Q Consensus 368 ~i~~~~~~~~~~ 379 (379)
.+.-.+.++||+
T Consensus 396 ~l~vs~~~eIil 407 (407)
T KOG1460|consen 396 ELNVSVQDEIIL 407 (407)
T ss_pred ccceeeecceeC
Confidence 999999999986
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-54 Score=377.13 Aligned_cols=325 Identities=31% Similarity=0.514 Sum_probs=271.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHH-HHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEERE-FALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~-i~~~l~~~~~~~~~~i 80 (379)
+.|+|+||.|| .||||+|||..+|||++|++++|||+|++++|.+ |++.+++..++ .++..+.+...+|+++
T Consensus 8 ~~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 8 QSVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred cceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEE
Confidence 57999999999 9999999999999999999999999999999987 77777776664 4445556666788999
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
.+..+.+++|+++.+..+++++......+|+|+++|+++++++++|+++|++++++.|++++++. +++.||++..|++
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd--epSkyGvv~~d~~ 163 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD--EPSKYGVVVIDED 163 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc--CccccceEEEecC
Confidence 88888889999999999999887643336999999999999999999999999999999999994 6999999999976
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+++|.+|.|||+...++-.++|+|+|+|++++.+... +|| ++.+++|.+++
T Consensus 164 ~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~------------ptS-----------------iekEifP~~a~ 214 (371)
T KOG1322|consen 164 TGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLR------------PTS-----------------IEKEIFPAMAE 214 (371)
T ss_pred CCceeEehhCchhhhhccccceEEEECHHHHhHhhhc------------ccc-----------------hhhhhhhhhhh
Confidence 8999999999998889999999999999999888732 222 23789999999
Q ss_pred CceEEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEE
Q 016989 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIV 319 (379)
Q Consensus 241 ~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~i 319 (379)
+.++++|.++|||.|||+|+||+.+..+|+++.....+..+. +++.+.+++.+.+-+.++. +|.|+ +++|
T Consensus 215 ~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~-----p~~~i~~nvlvd~~~~iG~----~C~Ig~~vvI 285 (371)
T KOG1322|consen 215 EHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLL-----PGSKIVGNVLVDSIASIGE----NCSIGPNVVI 285 (371)
T ss_pred cCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcccc-----CCccccccEeeccccccCC----ccEECCCceE
Confidence 999999999999999999999999999998876544333322 3355566666666666663 44576 4788
Q ss_pred CCCCEECCCcEEeeccc-------ccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 320 GWKSSIGRWSRVQAEGD-------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 320 g~~~~ig~~~~i~~~~~-------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
|++|+|+++++|.+..+ ..++++.|+++.+|.||.++.|. +|+||+++.|.+..
T Consensus 286 G~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~ 347 (371)
T KOG1322|consen 286 GPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADED 347 (371)
T ss_pred CCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEeccc
Confidence 88888888877777665 25566779999999999999995 88999999887643
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=380.83 Aligned_cols=313 Identities=32% Similarity=0.519 Sum_probs=261.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
.|+||||||| +||||+|+|..+||||+||+|+|||+|+|++|.+ +++++.+..+.+++|+++. ..++.++.|
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITY 77 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEE
Confidence 4799999999 9999999999999999999999999999999976 6666666666799999874 567899999
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
..+..++||+++|+.+.+++.. ++|++++||.+++.|+++++++|+++++..+++..+.. ++..||.+..+.+++
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~--~~~~~Gvv~~~~~~~ 152 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL--DPSEFGVVETDDGDG 152 (358)
T ss_pred EecCCcCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC--CCCcCceEEecCCCc
Confidence 9999999999999999999975 36999999999999999999999998777888887774 448899888874346
Q ss_pred cEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 163 ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 163 ~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+|.+|.|||. ...++++++|+|+|+|++|+++.... ..+|. .++++.+++
T Consensus 153 ~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~-------------------------~~~~~---~~~~~~l~~ 204 (358)
T COG1208 153 RVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGE-------------------------RFDFE---EELLPALAA 204 (358)
T ss_pred eEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccCC-------------------------cccch---hhHHHHHHh
Confidence 9999999993 56789999999999999999665322 22332 578888887
Q ss_pred Cce-EEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCC--CCCCCeEEecCeEECCCcEECCCCCCCcEEe-c
Q 016989 241 KKQ-LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG--DGTKNATIIGDVYVHPSAKIHPTAKENAVVT-N 316 (379)
Q Consensus 241 ~~~-v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~--~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~ 316 (379)
... +++|.++|+|.|+|+|++|++|++.++.............. .... +.+.+++++++++.|++++ .|+ .
T Consensus 205 ~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~----~i~~~ 279 (358)
T COG1208 205 KGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGA----LIGPY 279 (358)
T ss_pred CCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCC----EECCC
Confidence 776 99999999999999999999999888754332111100000 0123 7889999999999999765 466 7
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 371 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~ 371 (379)
|+||++|+||+++.|.+ |+|+++|.|++++.|.+|||+.+++||+
T Consensus 280 ~~ig~~~~I~~~~~i~~----------Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 280 TVIGEGVTIGNGVEIKN----------SIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred cEECCCCEECCCcEEEe----------eEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 88888888888888887 9999999999999999999999999997
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=366.48 Aligned_cols=331 Identities=24% Similarity=0.411 Sum_probs=264.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
|++++.|+||||| .|+||.|||+.++||.+|++|| .+|+.+|+++.+ |.|++.+...++.+||+.. +.|+.
T Consensus 2 ~~~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G-~~w~l 78 (393)
T COG0448 2 MKKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRG-WPWDL 78 (393)
T ss_pred CccceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCC-Ccccc
Confidence 4578899999999 9999999999999999999999 999999999987 8999998888999999974 44532
Q ss_pred c-----EEEec-------CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCC
Q 016989 79 P-----VRYLR-------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (379)
Q Consensus 79 ~-----i~~~~-------~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~ 146 (379)
. +.... +.+..||++|+++-+..+....+|+++++.||+++.+|++++++.|.++++++|+++.+++.
T Consensus 79 ~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~ 158 (393)
T COG0448 79 DRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPR 158 (393)
T ss_pred ccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECCh
Confidence 1 22222 23678999999999988887678999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEeCCCCcEEEeeecCCC-cccc-eeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccc
Q 016989 147 ESASQFGELVADPDTNELLHYTEKPET-FVSD-LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223 (379)
Q Consensus 147 ~~~~~~g~v~~d~~~~~v~~~~ekp~~-~~~~-~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (379)
.++++||++.+|+ +++|..|.|||.. +..+ ++++|+|+|++++| ++|.+..... ..
T Consensus 159 ~eas~fGim~~D~-~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~--------------------~~ 217 (393)
T COG0448 159 EEASRFGVMNVDE-NGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDP--------------------NS 217 (393)
T ss_pred HhhhhcCceEECC-CCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhccc--------------------Cc
Confidence 8999999999995 8999999999987 4444 89999999998876 5555332110 12
Q ss_pred ccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHh---hhhcCCc--cccCCCCCCCeEEecCeEE
Q 016989 224 TTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ---FRLTSPN--LLASGDGTKNATIIGDVYV 298 (379)
Q Consensus 224 ~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~---~~~~~~~--~~~~~~~~~~~~i~~~~~i 298 (379)
..||. .+++|.+.+...+++|+++|||.|+||.++|++||..+++. +....+. +.......+.+++..+..+
T Consensus 218 ~~Dfg---kdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v 294 (393)
T COG0448 218 SHDFG---KDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV 294 (393)
T ss_pred cccch---HHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE
Confidence 34453 89999988888899999999999999999999999666541 1111222 1111112233333332221
Q ss_pred CCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 299 HPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 299 ~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
.++-|..||+ .+ .|.+|+++.++.|+++|.|.+ |+|+.+|.||+||+|++|||..+++|++++.
T Consensus 295 -~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~----------svim~~~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 295 -SNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIEN----------SVIMPDVEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred -eeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEe----------eEEeCCcEECCCCEEEEEEeCCCcEeCCCcE
Confidence 1223333443 34 889999999999999999988 9999999999999999999999999999875
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=375.71 Aligned_cols=328 Identities=24% Similarity=0.386 Sum_probs=253.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC-C
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL-R 77 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~-~ 77 (379)
|+++++||||||| .||||+|||..+||||+||+|| |||+|+|++|.+ |+|++++..+++.+|+... +.+ +
T Consensus 2 ~~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~ 78 (407)
T PRK00844 2 AMPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQT-WRLSG 78 (407)
T ss_pred CCCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhC-cCccc
Confidence 5678999999999 9999999999999999999999 999999999986 7777776777799999742 211 2
Q ss_pred ccEEEe---cC------CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCC
Q 016989 78 IPVRYL---RE------DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAES 148 (379)
Q Consensus 78 ~~i~~~---~~------~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~ 148 (379)
..+.++ .+ ...+||+++++.+++++.++.+++|++++||++++.|+.++++.|.++++++|+++.+.+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~ 158 (407)
T PRK00844 79 LLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREE 158 (407)
T ss_pred cCCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHH
Confidence 222222 11 125899999999999997543457999999999999999999999998888999888765457
Q ss_pred CCceeEEEEeCCCCcEEEeeecCCCcc-------cceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhc
Q 016989 149 ASQFGELVADPDTNELLHYTEKPETFV-------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (379)
Q Consensus 149 ~~~~g~v~~d~~~~~v~~~~ekp~~~~-------~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (379)
+..||.+..|+ +++|..|.|||..+. ..++++|+|+|++++| +.+.+....+.+
T Consensus 159 ~~~~Gvv~~d~-~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~----------------- 220 (407)
T PRK00844 159 ASAFGVIEVDP-DGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDS----------------- 220 (407)
T ss_pred cccCCEEEECC-CCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcc-----------------
Confidence 78999999985 689999999986432 5789999999999986 666542211100
Q ss_pred cccccccccccccccccccCCceEEEEEc------------ccchhhcCCccchhhcchHHHHhhhhc---CCc--cccC
Q 016989 221 RNLTTDFVRLDQDILSPLAGKKQLYTYET------------MDFWEQIKTPGMSLKCSGLYLAQFRLT---SPN--LLAS 283 (379)
Q Consensus 221 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~------------~~~w~~i~t~~d~~~a~~~~l~~~~~~---~~~--~~~~ 283 (379)
..++ ..|+++.+.++.++++|.+ .|+|.|+++|++|++|++.++...... .+. ....
T Consensus 221 ---~~~~---~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~ 294 (407)
T PRK00844 221 ---SHDM---GGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTS 294 (407)
T ss_pred ---cccc---hhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCccccc
Confidence 1112 2689999888788999976 589999999999999998887532111 000 0000
Q ss_pred C-CCCCCe--------EEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECC
Q 016989 284 G-DGTKNA--------TIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 354 (379)
Q Consensus 284 ~-~~~~~~--------~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~ 354 (379)
. ..++.. .+.++++|++++.|+ + +.|++|+||++|.|+++|+|.+ |+|+++|.|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~----~~i~~svIg~~~~I~~~~~i~~----------sii~~~~~i~~ 359 (407)
T PRK00844 295 SPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-G----ATVRNSVLSPNVVVESGAEVED----------SVLMDGVRIGR 359 (407)
T ss_pred CCCCCCceEecCCCccceEEeCEEcCCCEEC-C----eeeEcCEECCCCEECCCCEEee----------eEECCCCEECC
Confidence 0 011111 234457777777776 4 4688999999999999999988 99999999999
Q ss_pred CcEEeccEECCCceeccccc
Q 016989 355 EVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 355 ~~~i~~~ii~~~~~i~~~~~ 374 (379)
+|.|.+|+|++++.|++++.
T Consensus 360 ~~~i~~~ii~~~~~i~~~~~ 379 (407)
T PRK00844 360 GAVVRRAILDKNVVVPPGAT 379 (407)
T ss_pred CCEEEeeEECCCCEECCCCE
Confidence 99999999999999999864
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=372.28 Aligned_cols=331 Identities=22% Similarity=0.355 Sum_probs=247.4
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCc-
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI- 78 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~- 78 (379)
|++|+||||||| +||||+|||..+||||+||+|+ |||+|++++|.+ |+|++++..+.+++|+++. ..|++
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~ 77 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLD 77 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-Cccccc
Confidence 367999999999 9999999999999999999999 899999999986 6666666667799999753 33442
Q ss_pred ------cEE--EecCCC---CCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCC
Q 016989 79 ------PVR--YLREDK---PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (379)
Q Consensus 79 ------~i~--~~~~~~---~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~ 147 (379)
.+. +..+.. ..||+++++.++++++...+++|++++||++++.++.++++.|.+.++++++++.+.+..
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~ 157 (380)
T PRK05293 78 RINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE 157 (380)
T ss_pred CCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh
Confidence 222 333322 589999999999999643235799999999999999999999998888888888776555
Q ss_pred CCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccc
Q 016989 148 SASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (379)
Q Consensus 148 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
++..||.+..++ +++|..+.|||..+..++.++|+|+|++++|. .+.+...... ...+
T Consensus 158 ~~~~yG~v~~d~-~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~--------------------~~~~ 216 (380)
T PRK05293 158 EASRFGIMNTDE-NMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPN--------------------SSHD 216 (380)
T ss_pred hccccCEEEECC-CCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCC--------------------chhh
Confidence 788999998874 68999999999776788999999999999874 4432211100 0112
Q ss_pred cccccccccccccCC-ceEEEEEcccchhhcCCccchhhcchHHHHhhhhc---CCc--cccCCCCCCCeEEecCeEECC
Q 016989 227 FVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT---SPN--LLASGDGTKNATIIGDVYVHP 300 (379)
Q Consensus 227 ~~~l~~d~l~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~---~~~--~~~~~~~~~~~~i~~~~~i~~ 300 (379)
|. .|+++.++++ .++++|..+++|.++|++++|++|+..++...... .+. ........+.++|++++.| .
T Consensus 217 ~~---~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~ 292 (380)
T PRK05293 217 FG---KNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-K 292 (380)
T ss_pred hH---HHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-e
Confidence 22 6888888754 68999999999999999999999986665432111 000 0011111223444444444 2
Q ss_pred CcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 301 SAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 301 ~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
++.|+++|.-...+.+|+||++|.||++|+|.+ |+|+++|.|+++|.|.+|+|++++.|++++.
T Consensus 293 ~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~----------svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 293 NSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKD----------SVIMPGAKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred cCEECCCCEEcceecceEEcCCCEECCCCEEEC----------CEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence 334444443112456899999999999999987 9999999999999999999999999998775
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=352.65 Aligned_cols=321 Identities=25% Similarity=0.376 Sum_probs=255.6
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEccc-chHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~-~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+||||||| .|+||+|+|..+||||+|++|+|||+|+++.+.+ +++++.+ ..+.+++|++. ...+++++.++
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~ 77 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYI 77 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEE
Confidence 58999999 9999999999999999999999999999999986 5555555 66679999875 24567777777
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+++++.+ +++++++||++++.++.++++.|.++++++++++.+.. ++..|+.+..+ ++++
T Consensus 78 ~~~~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~~~~~-~~~~ 151 (353)
T TIGR01208 78 VQGEPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTAFGVAVLE-DGKR 151 (353)
T ss_pred ECCCCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--ChhhCeEEEEc-CCCc
Confidence 777789999999999999854 35999999999999999999999998999999988763 56789988876 3568
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC-c
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-K 242 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~ 242 (379)
|..+.|||....+.+.++|+|+|++.+++.+....+.. +++ ++ + .++++.++++ .
T Consensus 152 v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~-~~e---------------------~~-l-~d~l~~l~~~g~ 207 (353)
T TIGR01208 152 ILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSW-RGE---------------------LE-I-TDAIQWLIEKGY 207 (353)
T ss_pred EEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCC-CCc---------------------EE-H-HHHHHHHHHcCC
Confidence 99999999877788999999999998888886543211 111 11 1 6788877754 6
Q ss_pred eEEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCCCCCCCeEEecCeEECCCcEE-----CCCCC--CCcEEe
Q 016989 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKI-----HPTAK--ENAVVT 315 (379)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-----~~~~~--~~~~i~ 315 (379)
++++|.++++|.++|||++|++|++.++.+... .+ + + ..+++.+.+++.|++++.| .++|. ++|.|+
T Consensus 208 ~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~---~~-~-~-i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~ 281 (353)
T TIGR01208 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDEVER---EV-Q-G-VDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIE 281 (353)
T ss_pred eEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc---cc-C-C-cCCCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEc
Confidence 899999999999999999999999888865321 11 1 1 2344555555555555555 22222 677888
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCc-EEeccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV-VVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~-~i~~~ii~~~~~i~~~~~ 374 (379)
+++|+++|.||++|.|++ +.+++|+|+++|.|+.++ .+.+|++++++.|++++.
T Consensus 282 ~~~i~~~~~Ig~~~~i~~-----~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~ 336 (353)
T TIGR01208 282 NSYIGPYTSIGEGVVIRD-----AEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRR 336 (353)
T ss_pred CcEECCCCEECCCCEEee-----eEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcc
Confidence 888888888888888874 566679999999999884 889999999999999865
|
Alternate name: dTDP-D-glucose synthase |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=362.42 Aligned_cols=328 Identities=20% Similarity=0.315 Sum_probs=249.9
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcc-hhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC--
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQP-MVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL-- 76 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~p-li~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~-- 76 (379)
|+++++||||||| +||||+|||..+||||+|++|+| ||+|+++.+.+ |+|++++..+.+.+|+++. +.+
T Consensus 12 ~~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~-~~~~~ 88 (425)
T PRK00725 12 LTRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRG-WSFFR 88 (425)
T ss_pred hhcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhh-hcccc
Confidence 4577999999999 99999999999999999999997 99999999986 7777777777799999752 111
Q ss_pred ---CccEEEe-------cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCC
Q 016989 77 ---RIPVRYL-------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (379)
Q Consensus 77 ---~~~i~~~-------~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~ 146 (379)
+..+.+. .++..+||+++++.+++++....+++|++++||++++.|+.++++.|.++++++|+++.+.+.
T Consensus 89 ~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~ 168 (425)
T PRK00725 89 EELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168 (425)
T ss_pred cCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 1112111 123468999999999999974333579999999999999999999999999999999887655
Q ss_pred CCCCceeEEEEeCCCCcEEEeeecCCCc-------ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhh
Q 016989 147 ESASQFGELVADPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQS 218 (379)
Q Consensus 147 ~~~~~~g~v~~d~~~~~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (379)
.++..||.+..|+ +++|..|.|||..+ ...++++|+|+|++++| +.|.+......
T Consensus 169 ~~~~~yG~v~~d~-~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~---------------- 231 (425)
T PRK00725 169 EEASAFGVMAVDE-NDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPN---------------- 231 (425)
T ss_pred hhcccceEEEECC-CCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCC----------------
Confidence 6788999999985 68999999998643 25789999999999976 56654221100
Q ss_pred hccccccccccccccccccccCCceEEEEEcc-----------cchhhcCCccchhhcchHHHHhhhh---cCCc--ccc
Q 016989 219 ATRNLTTDFVRLDQDILSPLAGKKQLYTYETM-----------DFWEQIKTPGMSLKCSGLYLAQFRL---TSPN--LLA 282 (379)
Q Consensus 219 ~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-----------~~w~~i~t~~d~~~a~~~~l~~~~~---~~~~--~~~ 282 (379)
...+|. .|+++.++++.++++|.+. +||.|+++|++|++++..++..... .... +..
T Consensus 232 ----~~~~~~---~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t 304 (425)
T PRK00725 232 ----SSHDFG---KDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWT 304 (425)
T ss_pred ----ccchhh---HHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCcccc
Confidence 011222 6899999888899999985 5999999999999999777642110 0000 101
Q ss_pred CCCC-CCCeE---------EecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEE
Q 016989 283 SGDG-TKNAT---------IIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGV 352 (379)
Q Consensus 283 ~~~~-~~~~~---------i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i 352 (379)
.... ++..+ +..+++|++++.| . +|.|++|+||++|.||++|.|.+ |+|+++|.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~----~~~i~~svi~~~~~I~~~~~i~~----------svi~~~~~I 369 (425)
T PRK00725 305 YQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-S----GAVVRRSVLFSRVRVNSFSNVED----------SVLLPDVNV 369 (425)
T ss_pred CCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-c----CccccCCEECCCCEECCCCEEee----------eEEcCCCEE
Confidence 1111 11111 1235566666666 3 35688999999999999999987 999999999
Q ss_pred CCCcEEeccEECCCceeccccc
Q 016989 353 EDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 353 ~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|++|+|.+|+|++++.|++++.
T Consensus 370 ~~~~~i~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 370 GRSCRLRRCVIDRGCVIPEGMV 391 (425)
T ss_pred CCCCEEeeEEECCCCEECCCCE
Confidence 9999999999999999888754
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=352.34 Aligned_cols=327 Identities=15% Similarity=0.225 Sum_probs=239.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchH-HHHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEER-EFALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~-~i~~~l~~~~~~~~~~i 80 (379)
.|+||||||| +|+||+|||.++||||+||+|| |||+|++++|.+ |+|++++..+ .+++|+.+ ...|++++
T Consensus 2 ~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~ 78 (369)
T TIGR02092 2 KMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHR 78 (369)
T ss_pred cEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCccc
Confidence 5899999999 9999999999999999999999 999999999987 6666555443 79999975 23455542
Q ss_pred ------EEec-CCCC--CChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCc
Q 016989 81 ------RYLR-EDKP--HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (379)
Q Consensus 81 ------~~~~-~~~~--~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~ 151 (379)
.+.. +... +|++.+++.++++++....++|++++||++++.|+.+++++|.++++++|+++.+.+..++..
T Consensus 79 ~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~ 158 (369)
T TIGR02092 79 KRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASE 158 (369)
T ss_pred ccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccc
Confidence 1222 2223 366777888888885322357999999999999999999999999999999988864335677
Q ss_pred eeE-EEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccccccccc
Q 016989 152 FGE-LVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (379)
Q Consensus 152 ~g~-v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
|+. +..++ +++|..+.+++........++|+|+|+++++ +.+.+..... ..++.
T Consensus 159 ~g~vv~~~~-~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~----------------------~~~~~- 214 (369)
T TIGR02092 159 YDTILRFDE-SGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRG----------------------KLTSL- 214 (369)
T ss_pred cCcEEEEcC-CCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcC----------------------ccccH-
Confidence 854 45553 5688877554332234578999999999865 5554321100 00111
Q ss_pred ccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhcC-----C-ccccCCCCCCCeEEecCeEECCCcE
Q 016989 230 LDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS-----P-NLLASGDGTKNATIIGDVYVHPSAK 303 (379)
Q Consensus 230 l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~-----~-~~~~~~~~~~~~~i~~~~~i~~~~~ 303 (379)
.++++.++++.++++|..+++|.++|||++|++|++.+++.+.... . .+.......+.+.|++++.| +++.
T Consensus 215 --~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~ 291 (369)
T TIGR02092 215 --EELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSL 291 (369)
T ss_pred --HHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeE
Confidence 5777777767789999999999999999999999977776543110 0 00011111234445554444 3445
Q ss_pred ECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 304 IHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 304 i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|+++|+-++.|.+|+|+++|.||++|+|.+ |+|+++|.|++++.+.+|+|+++++|+++++
T Consensus 292 Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~----------sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~ 352 (369)
T TIGR02092 292 VANGCIIEGKVENSILSRGVHVGKDALIKN----------CIIMQRTVIGEGAHLENVIIDKDVVIEPNVK 352 (369)
T ss_pred EcCCCEEeeEEeCCEECCCCEECCCCEEEe----------eEEeCCCEECCCCEEEEEEECCCCEECCCCE
Confidence 555554223577899999999999999988 9999999999999999999999999998765
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=355.28 Aligned_cols=322 Identities=22% Similarity=0.353 Sum_probs=245.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhccc--C--
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE--L-- 76 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~--~-- 76 (379)
++++||||||| .||||+|||..+||||+||+|+ |||+|++++|.+ |+|++.+..+.+++|+....+. +
T Consensus 2 ~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 2 KRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSG 79 (429)
T ss_pred CcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence 36899999999 9999999999999999999999 999999999986 6666666666799999752110 1
Q ss_pred C-ccEEEecCC-----CCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCC
Q 016989 77 R-IPVRYLRED-----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESAS 150 (379)
Q Consensus 77 ~-~~i~~~~~~-----~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~ 150 (379)
+ +.+.+..+. ..+||+++++.+++++....+++|++++||++++.|+.++++.|.+.++++|+++.+.+..++.
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 159 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDAS 159 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcc
Confidence 1 122221111 1379999999999998643345799999999999999999999999888899998876555678
Q ss_pred ceeEEEEeCCCCcEEEeeecCCCc---------------------ccceeeeeEEEeCHhhHH-Hhhccccccccchhhh
Q 016989 151 QFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLR 208 (379)
Q Consensus 151 ~~g~v~~d~~~~~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~ 208 (379)
.||.+..|+ +++|..|.|||... ...++++|+|+|++++|. .+.....
T Consensus 160 ~yG~i~~d~-~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~--------- 229 (429)
T PRK02862 160 GFGLMKTDD-DGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPE--------- 229 (429)
T ss_pred cceEEEECC-CCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCC---------
Confidence 999999984 78999999998632 235889999999999985 4443210
Q ss_pred hcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhc----CC--cccc
Q 016989 209 RVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT----SP--NLLA 282 (379)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~----~~--~~~~ 282 (379)
..+ +..++++.+.++.++++|.++++|.++|||++|+++++.++....+. .+ .+..
T Consensus 230 ---------------~~~---~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~ 291 (429)
T PRK02862 230 ---------------YTD---FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYT 291 (429)
T ss_pred ---------------hhh---hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceec
Confidence 011 12578888888889999999999999999999999998776221110 00 0111
Q ss_pred CCCCCC-----CeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECC---------
Q 016989 283 SGDGTK-----NATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGE--------- 348 (379)
Q Consensus 283 ~~~~~~-----~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~--------- 348 (379)
.....+ ++.+. ++.||+++.| + ++.|++|+||++|.||++|.|.+ |+|+.
T Consensus 292 ~~~~~~~a~~~~~~~~-~~~ig~~~~i-~----~~~i~~svi~~~~~Ig~~~~i~~----------svi~~~~~~p~~~~ 355 (429)
T PRK02862 292 RARYLPPSKLLDATIT-ESIIAEGCII-K----NCSIHHSVLGIRSRIESGCTIED----------TLVMGADFYESSEE 355 (429)
T ss_pred cCCCCCCccccccEEE-eCEECCCCEE-C----CcEEEEEEEeCCcEECCCCEEEe----------eEEecCcccccccc
Confidence 111112 33333 3567777776 4 35688999999999999999988 88876
Q ss_pred ----------CcEECCCcEEeccEECCCceeccccc
Q 016989 349 ----------AVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 349 ----------~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+|.||++|.|.+|+|++++.||+++.
T Consensus 356 ~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~ 391 (429)
T PRK02862 356 REELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVR 391 (429)
T ss_pred cccccccCCcccEECCCCEEEEEEECCCcEECCCcE
Confidence 69999999999999999999999876
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=351.22 Aligned_cols=323 Identities=22% Similarity=0.368 Sum_probs=240.4
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCC--
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR-- 77 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~-- 77 (379)
|++|+||||||| +|+||+|||..+||||+||+|+ |||+|+|+++.+ ++|++.+..+++.+|++.. +.++
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~-~~~~~~ 77 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRA-YNFGNG 77 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhcc-CCCCCC
Confidence 367999999999 9999999999999999999997 999999999986 7777666777799999752 2122
Q ss_pred -------ccEEEecC-----CCCCChHHHHHHHHHhhccCC---CCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEE
Q 016989 78 -------IPVRYLRE-----DKPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 78 -------~~i~~~~~-----~~~~g~~~al~~~~~~i~~~~---~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
+.+.+..+ .+++|++++++.++.++.+.. .++|++++||++++.|+.++++.|.++++++|+++.
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~ 157 (436)
T PLN02241 78 GNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACL 157 (436)
T ss_pred cccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEE
Confidence 22222222 246899999999887765321 357999999999999999999999999999999998
Q ss_pred EeCCCCCCceeEEEEeCCCCcEEEeeecCCCcc---------------------cceeeeeEEEeCHhhHH-Hhhccccc
Q 016989 143 KVSAESASQFGELVADPDTNELLHYTEKPETFV---------------------SDLINCGVYVFTPDIFN-AIQGVSSQ 200 (379)
Q Consensus 143 ~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~ 200 (379)
+.+..++.+||.+.+|+ +++|..|.|||..+. .+++++|+|+|++++|. .+.+..+.
T Consensus 158 ~v~~~~~~~ygvv~~d~-~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~ 236 (436)
T PLN02241 158 PVDESRASDFGLMKIDD-TGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPT 236 (436)
T ss_pred ecchhhcCcceEEEECC-CCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccc
Confidence 87655678999999974 789999999986432 37899999999999985 44432110
Q ss_pred cccchhhhhcchhhhhhhhccccccccccccccccccccCC-ceEEEEEcccchhhcCCccchhhcchHHHHhhhh---c
Q 016989 201 RKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRL---T 276 (379)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~---~ 276 (379)
..+|. .|+++.++.+ .++++|.++|+|.++++|++|++++..++..... .
T Consensus 237 -----------------------~~~~~---~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~ 290 (436)
T PLN02241 237 -----------------------ANDFG---SEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFY 290 (436)
T ss_pred -----------------------ccchh---HHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhcc
Confidence 11222 6888888765 6899999999999999999999999888753210 0
Q ss_pred CC--ccccCCCCC-----CCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECC-
Q 016989 277 SP--NLLASGDGT-----KNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGE- 348 (379)
Q Consensus 277 ~~--~~~~~~~~~-----~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~- 348 (379)
.+ .+....... .++.+.+ ++|+++++|+ + +.|++|+||++|.||++|+|.+ |+|+.
T Consensus 291 ~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~----~~I~~svI~~~~~Ig~~~~I~~----------sii~g~ 354 (436)
T PLN02241 291 DPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-E----CKIEHSVVGLRSRIGEGVEIED----------TVMMGA 354 (436)
T ss_pred CCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-C----eEEEeeEEcCCCEECCCCEEEE----------eEEECC
Confidence 00 111111111 2333433 5677777776 5 4678999999999999999988 44433
Q ss_pred ---------------C---cEECCCcEEeccEECCCceeccccc
Q 016989 349 ---------------A---VGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 349 ---------------~---~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+ +.||++|.|.+|+|++++.||+++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 355 DYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred CccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 2 3677777777777777777777653
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=343.18 Aligned_cols=326 Identities=23% Similarity=0.374 Sum_probs=245.7
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCC----ccE
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR----IPV 80 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~----~~i 80 (379)
||||||| .|+||+|+|+++||||+|++|+ |||+|+++.|.+ |+|++.+..+.+.+|+... ..+. ..+
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRG-WDFDGFIDGFV 77 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhc-cCccCccCCCE
Confidence 6999999 9999999999999999999999 899999999986 6666666656689998742 1111 122
Q ss_pred EEe-------cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCcee
Q 016989 81 RYL-------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 81 ~~~-------~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
.+. .++...|++++++.+.+++....+++|++++||++++.++.++++.|.++++++++++.+.+..++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 221 1223589999999999988643345799999999999999999999988888888888876555678999
Q ss_pred EEEEeCCCCcEEEeeecCCCcccc-------eeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccccc
Q 016989 154 ELVADPDTNELLHYTEKPETFVSD-------LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (379)
Q Consensus 154 ~v~~d~~~~~v~~~~ekp~~~~~~-------~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
.+..++ +++|..+.|||..+... +.++|+|+|++++| +.+.+...... ...
T Consensus 158 ~v~~d~-~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~--------------------~~~ 216 (361)
T TIGR02091 158 VMQVDE-DGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPE--------------------SSH 216 (361)
T ss_pred EEEECC-CCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCC--------------------ccc
Confidence 999874 68999999998655455 89999999999986 55553221110 011
Q ss_pred ccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhcC---Ccccc---CCCCCCCeEEecCeEEC
Q 016989 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS---PNLLA---SGDGTKNATIIGDVYVH 299 (379)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~---~~~~~---~~~~~~~~~i~~~~~i~ 299 (379)
++ ..++++.++++.++++|.++++|.++||+++|++|+..++.+..... ..... ....++++.+++.+.|
T Consensus 217 ~~---~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i- 292 (361)
T TIGR02091 217 DF---GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV- 292 (361)
T ss_pred cc---HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-
Confidence 12 26888888887899999999999999999999999988775432110 00100 0112345555555322
Q ss_pred CCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 300 PSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 300 ~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+++.|+++|+ ..+.|.+|+||++|.||++|+|.+ |+|+++|.||++|.|.+|+|+++++|+.++.
T Consensus 293 ~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~----------sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~ 358 (361)
T TIGR02091 293 VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVED----------SVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV 358 (361)
T ss_pred ECCEECCCCEECCCEEEccEECCCCEECCCCEEee----------eEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence 2344444444 222678999999999999999987 9999999999999999999999999999864
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=297.74 Aligned_cols=230 Identities=25% Similarity=0.441 Sum_probs=204.3
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----E-EEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----I-YLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----i-iv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|+||||||| .||||+|+|...||+|+||.+||||+|+|+.|.. | +|+++.....+.+++++ ..+||+++.|
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY 77 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITY 77 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEE
Confidence 689999999 9999999999999999999999999999999986 4 55566555668888887 4679999999
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
..|+++.|-|+|+..+.+++.++ +|+++.||+++..++.++++.+.+++.+++++..++. +|++||++.+|+ ++
T Consensus 78 ~~Q~~p~GlA~Av~~a~~fv~~~---~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~rfGV~e~d~-~~ 151 (286)
T COG1209 78 AVQPEPDGLAHAVLIAEDFVGDD---DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPSRYGVVEFDE-DG 151 (286)
T ss_pred EecCCCCcHHHHHHHHHhhcCCC---ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC--CcccceEEEEcC-CC
Confidence 99999999999999999999853 6999999999955999999998888888999999994 899999999995 67
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC-
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK- 241 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~- 241 (379)
+|.++.|||+.++++|+-+|+|+|++++|+.++...++.+++.++ +|+++.++++
T Consensus 152 ~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEI------------------------Td~i~~~i~~G 207 (286)
T COG1209 152 KVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEI------------------------TDAIDLYIEKG 207 (286)
T ss_pred cEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEe------------------------hHHHHHHHHcC
Confidence 999999999999999999999999999999999988887765542 6777777654
Q ss_pred ceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
..+......|+|.|.||++++++|+++.+.
T Consensus 208 ~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 208 YLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred cEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 567777788899999999999999988765
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=298.45 Aligned_cols=229 Identities=23% Similarity=0.374 Sum_probs=181.6
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
.+.+|||||| +||||++ .+||-|.|++||||++|+|+.+.. ++|+++..+ .+++.+... .++.
T Consensus 2 ~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae-~V~~~~~~~-----~~v~ 70 (460)
T COG1207 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAE-QVREALAER-----DDVE 70 (460)
T ss_pred CceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHH-HHHHHhccc-----cCce
Confidence 4789999999 9999999 999999999999999999999986 556666555 477666531 1577
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
|+.|.+++||++|++++++++.++...++||++||+|+ ...|+++++.|...++.+++++... ++|..||.+..++
T Consensus 71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~--~dP~GYGRIvr~~ 148 (460)
T COG1207 71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--DDPTGYGRIVRDG 148 (460)
T ss_pred EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc--CCCCCcceEEEcC
Confidence 88889999999999999999955444579999999999 5568999999998888899999887 5899999999985
Q ss_pred CCCcEEEeeecC----CCcccceeeeeEEEeCH-hhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKP----ETFVSDLINCGVYVFTP-DIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp----~~~~~~~~~~Giy~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..|.|.- +......+|+|+|+|+. .++++|.+..+.+.++|| |||+.-++..
T Consensus 149 -~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY--YLTDvI~i~~---------------- 209 (460)
T COG1207 149 -NGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEY--YLTDVIAIAR---------------- 209 (460)
T ss_pred -CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcE--eHHHHHHHHH----------------
Confidence 78999998842 23457789999999995 578999999888888888 6654333322
Q ss_pred cccccCCceEEEEEcccchh--hcCCccchhhcchHHHHh
Q 016989 235 LSPLAGKKQLYTYETMDFWE--QIKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 235 l~~l~~~~~v~~~~~~~~w~--~i~t~~d~~~a~~~~l~~ 272 (379)
.++.++.++...+++. -+++-..+-++.+.+..+
T Consensus 210 ----~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r 245 (460)
T COG1207 210 ----NEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRR 245 (460)
T ss_pred ----hCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHH
Confidence 2457899998876654 445555555555655543
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=315.42 Aligned_cols=318 Identities=19% Similarity=0.292 Sum_probs=217.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++++||||||| .|+||++ .+||+|+|++|+|||+|+++++.+ +++++.+..+.+.+++.+. ..+.
T Consensus 2 ~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~ 71 (459)
T PRK14355 2 NNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVS 71 (459)
T ss_pred CcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceE
Confidence 35899999999 9999986 789999999999999999999986 5666555555688888642 1455
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
+..+...+|++++++.+++++++. .++|++++||.++ +.+++++++.|.+.+++++++..+. .++..|+.+..|+
T Consensus 72 ~~~~~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~~~g~v~~d~ 148 (459)
T PRK14355 72 FALQEEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRDA 148 (459)
T ss_pred EEecCCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcCCEEEEcC
Confidence 656677889999999999998642 2479999999965 6789999999988887787777665 3567889888874
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..+.|||... ..+++++|+|+|++++ ++.+.+..+....+++ + + .|+
T Consensus 149 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~--------------------~--~-~d~ 204 (459)
T PRK14355 149 -DGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEY--------------------Y--L-TDI 204 (459)
T ss_pred -CCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCce--------------------e--H-HHH
Confidence 68999999876321 2478899999999986 5666544321111111 1 1 688
Q ss_pred cccccCC-ceEEEEEcccc--hhhcCCccchhhcchHHHHhhhh-c-CCccccCCCCCCC-eEEecCeEECCCcEECCCC
Q 016989 235 LSPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRL-T-SPNLLASGDGTKN-ATIIGDVYVHPSAKIHPTA 308 (379)
Q Consensus 235 l~~l~~~-~~v~~~~~~~~--w~~i~t~~d~~~a~~~~l~~~~~-~-~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~ 308 (379)
++.++++ .++++|+++++ |.++++|++|++++++++.+... . ..+.. ..+++ ..|++++.|++++.|+++|
T Consensus 205 i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~---~i~~~~~~i~~~v~ig~~~~I~~~~ 281 (459)
T PRK14355 205 VAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVT---LIDPETTYIDRGVVIGRDTTIYPGV 281 (459)
T ss_pred HHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCE---EECCCceEECCCeEEcCCCEEeCCc
Confidence 8888765 58999999887 88999999999998766654221 0 00000 01121 2333444444444444332
Q ss_pred ------------C--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 309 ------------K--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 309 ------------~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
. .++.|.+|+||++|.|+++|.|.+ |+|+++|.||+++++. ++.|++++.||.++
T Consensus 282 ~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~----------~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 282 CISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLED----------SVVGDDVAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred EEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeC----------CEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence 2 334444555555555555555543 6666666666666664 66666666666665
Q ss_pred c
Q 016989 374 H 374 (379)
Q Consensus 374 ~ 374 (379)
.
T Consensus 352 ~ 352 (459)
T PRK14355 352 E 352 (459)
T ss_pred c
Confidence 3
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=305.45 Aligned_cols=320 Identities=20% Similarity=0.266 Sum_probs=217.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++|+||||||| +|+||++ .+||+|+|++|+|||+|++++|.+ ++|++.+..+.+++++.. ..+.
T Consensus 6 ~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~------~~i~ 74 (481)
T PRK14358 6 RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG------SGVA 74 (481)
T ss_pred CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc------CCcE
Confidence 57899999999 9999998 689999999999999999999975 666655555567777752 2355
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++... .++|++++||.++ +.+++++++.|.++++++|+++.+.+ ++..||.+..++
T Consensus 75 ~v~~~~~~Gt~~al~~~~~~l~~~-~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--~~~~yG~v~~d~ 151 (481)
T PRK14358 75 FARQEQQLGTGDAFLSGASALTEG-DADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--DATGYGRIVRGA 151 (481)
T ss_pred EecCCCcCCcHHHHHHHHHHhhCC-CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCceEEEECC
Confidence 666677889999999999888532 1359999999976 67799999999988888888887764 567899999984
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (379)
+++|..|.|||... ..+++++|+|+|++++++.+....+....+++ . | .|++
T Consensus 152 -~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~---------------------~-l-~d~i 207 (481)
T PRK14358 152 -DGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEY---------------------Y-L-TDLL 207 (481)
T ss_pred -CCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeE---------------------E-H-HHHH
Confidence 68999999997633 24578999999997665555433221111111 1 2 5788
Q ss_pred ccccCC-ceEEEEEcccchhhcCCccchhhcch--HHHHhhhh--cC-------Ccc-ccCCC--CCCCeEEecCeEECC
Q 016989 236 SPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSG--LYLAQFRL--TS-------PNL-LASGD--GTKNATIIGDVYVHP 300 (379)
Q Consensus 236 ~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~--~~l~~~~~--~~-------~~~-~~~~~--~~~~~~i~~~~~i~~ 300 (379)
+.+.++ .++++|.+.++|..++...++..++. ++..+... .. |.. ...+. +..++.|.++++|..
T Consensus 208 ~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~ 287 (481)
T PRK14358 208 GLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRG 287 (481)
T ss_pred HHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeC
Confidence 887765 57999999989988888776644432 22222210 00 100 00000 112233333333333
Q ss_pred CcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccccc
Q 016989 301 SAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSVH 374 (379)
Q Consensus 301 ~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~ 374 (379)
++.|+++|. ++|.|++|+||++|.|+++++|.+ ++||++|.|++++.|. +++|++++.|++++.
T Consensus 288 ~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~----------~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 288 QTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEG----------AEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE 354 (481)
T ss_pred CcEECCCCEECCCCEEeeeEECCCCEEeecceecC----------CeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence 333333333 555667777777777777777755 6777777777777664 666666666666543
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=305.48 Aligned_cols=324 Identities=18% Similarity=0.244 Sum_probs=212.8
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
..+.||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ +++++.+..+.+.+++... ...+.
T Consensus 3 ~~~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~~~~~ 73 (482)
T PRK14352 3 RPTAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL----APEVD 73 (482)
T ss_pred CCceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc----CCccE
Confidence 35689999999 9999998 789999999999999999999986 5555444445577777642 12344
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++..+..+++++++||.++ ..++.++++.|.+.+++++++..+. .++..|+.+..++
T Consensus 74 ~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~~ 151 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRDQ 151 (482)
T ss_pred EEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEECC
Confidence 55667788999999999998864333579999999975 5779999999988777777776655 4678899888764
Q ss_pred CCCcEEEeeecCCCcc----cceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFV----SDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..+.|||.... ..++++|+|+|++++|. .+.+....+.+++ +. + .|+
T Consensus 152 -~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e---------------------~~-l-~d~ 207 (482)
T PRK14352 152 -DGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGE---------------------LY-L-TDV 207 (482)
T ss_pred -CCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCc---------------------Ee-H-HHH
Confidence 689999999987432 45789999999999874 4443322111111 11 1 688
Q ss_pred cccccCC-ceEEEEEcccchhhcCCccch------hhcchHHHHhhhhcCCccccCCCCCCCeEEecCeEECCCcEECCC
Q 016989 235 LSPLAGK-KQLYTYETMDFWEQIKTPGMS------LKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPT 307 (379)
Q Consensus 235 l~~l~~~-~~v~~~~~~~~w~~i~t~~d~------~~a~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~ 307 (379)
++.+++. .++++|+++++|.++++++++ ..+++.++..+......+. .+..+.|.++++||++++|+++
T Consensus 208 i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~----~~~~~~i~~~v~ig~~~~I~~~ 283 (482)
T PRK14352 208 LAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIV----DPATTWIDVDVTIGRDVVIHPG 283 (482)
T ss_pred HHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEE----CCCeEEEeCCEEECCCcEEeCC
Confidence 8888765 589999999999999999887 3333333333322111110 0123455555555555555544
Q ss_pred CCCCcEEeceEECCCCEECCCcEEeeccc------ccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 308 AKENAVVTNAIVGWKSSIGRWSRVQAEGD------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 308 ~~~~~~i~~s~ig~~~~ig~~~~i~~~~~------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+. ...+++||++|.|+++|.|.+..+ ..+.+++|+|+++|.||+++.+. +++|++++.|+..
T Consensus 284 ~~---i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~ 352 (482)
T PRK14352 284 TQ---LLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAF 352 (482)
T ss_pred cE---EeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCc
Confidence 43 222444444444444444433111 01122335555555565555553 5555555555443
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=283.64 Aligned_cols=352 Identities=18% Similarity=0.283 Sum_probs=227.4
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEccc-chHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~-~~~~i~~~l~~~~~~~~~~ 79 (379)
+..++||++||| -||||..++...|||||||+|+|||+|++++|.+ ++|++.. ....++..+.... .+..+
T Consensus 7 ~~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~ 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR 83 (433)
T ss_pred hHHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc
Confidence 367999999999 9999999999999999999999999999999987 5665554 3346777775421 12222
Q ss_pred ---EEEec-CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeC---------C
Q 016989 80 ---VRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS---------A 146 (379)
Q Consensus 80 ---i~~~~-~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~---------~ 146 (379)
+.+-. .+...||+++|+.....++. ++|++++||.+.+.++..++++++..++...+++.... .
T Consensus 84 ~~~v~ip~~~~~d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~ 160 (433)
T KOG1462|consen 84 PDYVEIPTDDNSDFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKG 160 (433)
T ss_pred ccEEEeecccccccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccc
Confidence 22211 12367999999999998876 25999999999999999999999887766555544321 0
Q ss_pred CCCCceeEEEEeCCCCcEEEeeec-----------------CC-CcccceeeeeEEEeCHhhHHHhhccc-cccccchhh
Q 016989 147 ESASQFGELVADPDTNELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDIFNAIQGVS-SQRKDRENL 207 (379)
Q Consensus 147 ~~~~~~g~v~~d~~~~~v~~~~ek-----------------p~-~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~~~ 207 (379)
...+.+.++..+++++|+...... |. ...++|.++++|+|+.+++++|++.. ....+++++
T Consensus 161 k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~ 240 (433)
T KOG1462|consen 161 KKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFL 240 (433)
T ss_pred ccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeeccccc
Confidence 112233444455445565433221 22 23588999999999999999998765 445788889
Q ss_pred hhcchhhhhhhhc-ccccccccccccccccccc-----CCceEEEEEcc--cchhhcCCccchhhcchHHHHhhhhcCCc
Q 016989 208 RRVSSFEALQSAT-RNLTTDFVRLDQDILSPLA-----GKKQLYTYETM--DFWEQIKTPGMSLKCSGLYLAQFRLTSPN 279 (379)
Q Consensus 208 ~~~~~~~~~~~~~-~~~~~~~~~l~~d~l~~l~-----~~~~v~~~~~~--~~w~~i~t~~d~~~a~~~~l~~~~~~~~~ 279 (379)
||++..|.-+... +.....+.. .+.+.+... ++.++++|... +-+..++|...|+++|+ -.-+..+++.
T Consensus 241 P~lvkkQ~q~~~~~~~~~~~~l~-t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~--~k~~~~l~~e 317 (433)
T KOG1462|consen 241 PYLVKKQFQKNPPLKKNETSILP-TPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINR--DKKLKKLCSE 317 (433)
T ss_pred chhhhhhhhcCCCcccccccccC-CccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhH--HHHHHHhccc
Confidence 9998766522110 000000000 011111111 13456666653 45678999999999995 1123333332
Q ss_pred cc-cCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeeccc-------ccccccceEECCCcE
Q 016989 280 LL-ASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGD-------FNAKLGITILGEAVG 351 (379)
Q Consensus 280 ~~-~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~-------~~~~~~~sii~~~~~ 351 (379)
-. ........+.++-++.|++++.|+ +++.|..|+||+||.||+.++|.+..+ .++.+++||||.+++
T Consensus 318 ~~~~k~~~~~~~l~g~d~iv~~~t~i~----~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~ 393 (433)
T KOG1462|consen 318 AKFVKNYVKKVALVGADSIVGDNTQIG----ENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQ 393 (433)
T ss_pred cccccchhhheeccchhhccCCCceec----ccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccce
Confidence 21 122222346666667777777777 456788888888888888888877332 133444566666666
Q ss_pred ECCCcEEeccEECCCceec
Q 016989 352 VEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 352 i~~~~~i~~~ii~~~~~i~ 370 (379)
||+||.++||+|+++-+|+
T Consensus 394 Ig~gs~L~nC~Ig~~yvVe 412 (433)
T KOG1462|consen 394 IGSGSKLKNCIIGPGYVVE 412 (433)
T ss_pred ecCCCeeeeeEecCCcEEc
Confidence 6666666666666666666
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=304.09 Aligned_cols=319 Identities=16% Similarity=0.238 Sum_probs=211.4
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCcc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
|+..+.||||||| +|+||++ .+||+|+|++|+|||+|+++.|.. +++++.+..+.+.+++.. ..
T Consensus 2 ~~~~~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~ 70 (456)
T PRK14356 2 MASTTGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------ED 70 (456)
T ss_pred CCcceeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cC
Confidence 6667899999999 9999985 789999999999999999999976 555554444456666542 23
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+.++.++...|++++++.++++++....+++++++||+++ ..+++.+++.|. +++++++..+.+ ++..||.+..
T Consensus 71 ~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~--~~~~~g~v~~ 146 (456)
T PRK14356 71 ARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP--DPGAYGRVVR 146 (456)
T ss_pred ceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC--CCCCceEEEE
Confidence 4455556678999999999998864334579999999976 567899998876 556777777663 6778998766
Q ss_pred eCCCCcEEEeeecCCC------cccceeeeeEEEeCHhhHHHh-hccccccccchhhhhcchhhhhhhhccccccccccc
Q 016989 158 DPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL 230 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (379)
+ +++|..+.|||.. +..++.++|+|+|++++++.+ +........++ ++ +
T Consensus 147 ~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e---------------------~~-l 202 (456)
T PRK14356 147 R--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGE---------------------YY-I 202 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCc---------------------EE-H
Confidence 3 6899999998652 235688999999999987644 32221111111 11 1
Q ss_pred cccccccccC-CceEEEEEccc--chhhcCCccchhhcchHHHHhhhh--cCCccccC----------CCCCCCeEEecC
Q 016989 231 DQDILSPLAG-KKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRL--TSPNLLAS----------GDGTKNATIIGD 295 (379)
Q Consensus 231 ~~d~l~~l~~-~~~v~~~~~~~--~w~~i~t~~d~~~a~~~~l~~~~~--~~~~~~~~----------~~~~~~~~i~~~ 295 (379)
.++++.+.+ +.++.++.+.+ .|.+++||++|.++++++..+... ..++.... ....+++.|.++
T Consensus 203 -td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~ 281 (456)
T PRK14356 203 -TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGP 281 (456)
T ss_pred -HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCC
Confidence 577777654 46899999866 469999999999998777654321 11111000 011122333222
Q ss_pred eEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 296 VYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 296 ~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+.|+.++.|+++|. ++|.|.+|+||++|.|+++|+|.+ |+||++|.||+++.|. +|+|++++.|+++
T Consensus 282 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~ 351 (456)
T PRK14356 282 CEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEG----------AEVGDGCSVGPYARLRPGAVLEEGARVGNF 351 (456)
T ss_pred cEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcc----------cceecccEECCceEECCCCEECCCCEecCC
Confidence 22222223333332 445566666666666666666654 6666666666666664 5666666666655
Q ss_pred c
Q 016989 373 V 373 (379)
Q Consensus 373 ~ 373 (379)
+
T Consensus 352 ~ 352 (456)
T PRK14356 352 V 352 (456)
T ss_pred c
Confidence 4
|
|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=280.58 Aligned_cols=250 Identities=54% Similarity=1.012 Sum_probs=197.8
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
|||||||...|+||+|+|..+||||+|++|+|||+|+++++.+ |+|++++..+.+.+|+++.....++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999112999999999999999999999999999999974 6677766667799999865445667777777
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcE
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNEL 164 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v 164 (379)
+....||+++++.+++++....+++|++++||++++.|++++++.|+++++++|+++.+.+..++..||.+..++++++|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v 160 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV 160 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence 77789999999999999854323579999999999999999999999999999999887654567899998887336899
Q ss_pred EEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCceE
Q 016989 165 LHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQL 244 (379)
Q Consensus 165 ~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 244 (379)
..+.|||....+.++++|+|+|++++|+.+.+..+.+. +|+ ...+.... +....+..+..|+++.++++.++
T Consensus 161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~-~e~-----~~~~~~~~--~~~~~~~~~~~d~~~~l~~~~~v 232 (257)
T cd06428 161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQ-QEA-----QLGDDNNR--EGRAEVIRLEQDVLTPLAGSGKL 232 (257)
T ss_pred EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccc-ccc-----cccccccc--ccccceeeehhhhhhHHhccCCE
Confidence 99999998777889999999999999988876443222 111 00000000 00012233447999999888899
Q ss_pred EEEEcccchhhcCCccchhhcchH
Q 016989 245 YTYETMDFWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 245 ~~~~~~~~w~~i~t~~d~~~a~~~ 268 (379)
++|+++|+|.+++||++|++|+++
T Consensus 233 ~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 233 YVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred EEecCCCeeecCCCHHHHHhHhhc
Confidence 999999999999999999999865
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=296.60 Aligned_cols=314 Identities=20% Similarity=0.272 Sum_probs=215.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.||||||| .|+||++ .+||+|+|++|+|||+|+++.+.. ++|++.+..+.+.+++... +.++.
T Consensus 4 ~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAE 74 (446)
T ss_pred ccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCce
Confidence 56899999999 9999986 689999999999999999999975 6666665555677777542 22334
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
+..+....|++++++.+++++... .+++++++||.++ ..++..+++. .+.+++++++..+. .++..|+.+..+
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~--~~~~~~g~~~~~- 149 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRA--ADPTGYGRLIVK- 149 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEe--CCCCcceEEEEC-
Confidence 444566789999999999888521 2469999999966 5568888874 44566777777665 356788877764
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..+.|||... ...+.++|+|+|+++.| +.+++....... ..++ + .++
T Consensus 150 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~---------------------~~~~-~-~d~ 205 (446)
T PRK14353 150 -GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAK---------------------GEYY-L-TDI 205 (446)
T ss_pred -CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCC---------------------CcEe-H-HHH
Confidence 67999999997532 23678999999998654 665543211100 1111 1 567
Q ss_pred cccccC-CceEEEEEcc-cchhhcCCccchhhcchHHHHhhh---hc-CCcccc--------CCCCCCCeEEecCeEECC
Q 016989 235 LSPLAG-KKQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFR---LT-SPNLLA--------SGDGTKNATIIGDVYVHP 300 (379)
Q Consensus 235 l~~l~~-~~~v~~~~~~-~~w~~i~t~~d~~~a~~~~l~~~~---~~-~~~~~~--------~~~~~~~~~i~~~~~i~~ 300 (379)
++.+++ +.+++++..+ +.|.+++||+||.+|+.++..+.. .+ ...+.. ...+.+++.|++++.|++
T Consensus 206 ~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~ 285 (446)
T PRK14353 206 VAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGP 285 (446)
T ss_pred HHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECC
Confidence 777764 4679999986 469999999999999877755421 01 011110 011234455555555666
Q ss_pred CcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 301 SAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 301 ~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
++.|+++|. .++.|.+|+||++|+||+++.|..+ |+||++|.||++|.+.+++|++++
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~---------~~ig~~~~Ig~~~~i~~~~i~~~~ 345 (446)
T PRK14353 286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPG---------AELGEGAKVGNFVEVKNAKLGEGA 345 (446)
T ss_pred CCEECCCCEECCCeEEeccEECCCcEECCCeEEecc---------ceecCCeEEcCceEEeceEECCCC
Confidence 666665555 5566777889999999998888755 666666666666655544444433
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=295.85 Aligned_cols=324 Identities=15% Similarity=0.205 Sum_probs=217.8
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.++||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++|+..+..+.+++++.+.. .++++.+.
T Consensus 2 ~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~ 74 (430)
T PRK14359 2 KLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQ 74 (430)
T ss_pred CccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhcC--CceEEEEe
Confidence 4789999999 9999998 899999999999999999999975 55555556666888886521 13444333
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+.. ..++|++++||.++. ..+.++.+.+.++++++++.+.. ++..|+.+..+ +++
T Consensus 75 ~~~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~--~~~~~g~v~~d--~g~ 143 (430)
T PRK14359 75 DLENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA--DPKGYGRVVIE--NGQ 143 (430)
T ss_pred cCccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC--CCccCcEEEEc--CCe
Confidence 33456799999987422 135799999999762 23445555556677788877763 56778887765 579
Q ss_pred EEEeeecCCCc----ccceeeeeEEEeCHhhHHHhhccc-cccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 164 LLHYTEKPETF----VSDLINCGVYVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 164 v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
|..+.|+|... ...+.++|+|+|++++|+.+.+.. ....+.++ +. .|+++.+
T Consensus 144 v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~--------------------~l---~d~i~~l 200 (430)
T PRK14359 144 VKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEY--------------------YL---TDIIALA 200 (430)
T ss_pred EEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCce--------------------eh---hhHHHHH
Confidence 99999887422 246789999999999987663321 11111111 11 5777777
Q ss_pred cCC-ceEEEEEcc-cchhhcCCccchhhcchHHHHhhhhc--CCccc-cC---CCCCCCeEEecCeEECCCcEECCCCC-
Q 016989 239 AGK-KQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRLT--SPNLL-AS---GDGTKNATIIGDVYVHPSAKIHPTAK- 309 (379)
Q Consensus 239 ~~~-~~v~~~~~~-~~w~~i~t~~d~~~a~~~~l~~~~~~--~~~~~-~~---~~~~~~~~i~~~~~i~~~~~i~~~~~- 309 (379)
++. .++.++..+ ++|.++++|+||.++++++..+.... ..+.. .. ...++++.|.+++.||+++.|+++|.
T Consensus 201 ~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i 280 (430)
T PRK14359 201 IEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKI 280 (430)
T ss_pred HHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEE
Confidence 654 789999986 58999999999999987776553321 11100 00 01245666667777777777766553
Q ss_pred -----------CCcEEeceEECCCCEECCCcEEeeccc-ccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 310 -----------ENAVVTNAIVGWKSSIGRWSRVQAEGD-FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 310 -----------~~~~i~~s~ig~~~~ig~~~~i~~~~~-~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
.++.+.+|+||++|.|+++++|.+..+ ..+++++++| ++|+||+++.|.+|+||+++.||.++
T Consensus 281 ~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~-~~~~i~~~~~i~d~~Ig~~~~ig~~~ 355 (430)
T PRK14359 281 ENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKL-NGVKAGHLSYLGDCEIDEGTNIGAGT 355 (430)
T ss_pred EeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEe-ccccccccccccCCEECCCCEECCCc
Confidence 234445677777777777777754333 2445555555 55677777777777777777777764
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=282.05 Aligned_cols=232 Identities=19% Similarity=0.283 Sum_probs=185.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc-------
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------- 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~------- 74 (379)
.+|+||||||| .||||+|+|..+||||+||+|||||+|+++.+.. |+|++++..+.+.+|+.....
T Consensus 2 ~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 2 TNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 47899999999 9999999999999999999999999999999986 666666566668888854210
Q ss_pred --------------cCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--------CChHHHHHHHHh
Q 016989 75 --------------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHRN 132 (379)
Q Consensus 75 --------------~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--------~dl~~~l~~~~~ 132 (379)
.+++++.++.|++++||+++++.|.+++.+ ++|++++||++++ .++.++++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~ 156 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMIARFNE 156 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHHHHHHH
Confidence 245678888889999999999999999964 3599999999985 589999999987
Q ss_pred cCCceEEEEEEeCCCCCCceeEEEEeC---CCCc---EEEeeecCCCc---ccceeeeeEEEeCHhhHHHhhcccccccc
Q 016989 133 YGGMGTILVIKVSAESASQFGELVADP---DTNE---LLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (379)
Q Consensus 133 ~~~~~ti~~~~~~~~~~~~~g~v~~d~---~~~~---v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~~~~~ 203 (379)
.++.+ +++...+ .++.+||.+..++ ++++ |..+.|||..+ .++++++|+|+|++++|+.+....+...
T Consensus 157 ~~~~~-~~~~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~- 233 (297)
T TIGR01105 157 TGRSQ-VLAKRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAW- 233 (297)
T ss_pred hCCcE-EEEEEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCC-
Confidence 77655 4444433 3589999998841 2454 58889998643 4789999999999999999876543211
Q ss_pred chhhhhcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+++ . | +|+++.++++.++++|.++|+|.|+|+|++|++|+..+
T Consensus 234 ge~---------------------~-l-td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 234 GRI---------------------Q-L-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred Cee---------------------e-H-HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 111 1 1 68888888888999999999999999999999997443
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=298.95 Aligned_cols=325 Identities=20% Similarity=0.295 Sum_probs=208.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+.|+||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ +++++.+..+.+++++.. .++.
T Consensus 4 ~~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~------~~~~ 72 (456)
T PRK09451 4 SAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD------EPLN 72 (456)
T ss_pred CCceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc------CCcE
Confidence 45899999999 9999995 789999999999999999999975 555555555567777753 1344
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++.++ +++++++||.++ +.++.++++.|.+.+ .++++.+. .++..||.+..+
T Consensus 73 ~i~~~~~~Gt~~al~~a~~~l~~~--~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~yG~v~~~- 145 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--DNPTGYGRITRE- 145 (456)
T ss_pred EEECCCCCCcHHHHHHHHHhhccC--CcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--CCCCCceEEEec-
Confidence 555667889999999999888532 469999999965 678999998886543 44555554 356789987543
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|.+|.|||... ..+++++|+|+|++++| +++.+.......++ .+ + .|+
T Consensus 146 -~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e--------------------~~--l-~d~ 201 (456)
T PRK09451 146 -NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGE--------------------YY--I-TDI 201 (456)
T ss_pred -CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCc--------------------ee--H-HHH
Confidence 67999999998532 24689999999998876 45654332111111 11 1 688
Q ss_pred cccccCC-ceEEEEE------cccc--hhhcCCccchhhcch---HHHHhhhhcCCccc--c-------CCCCCCCeEEe
Q 016989 235 LSPLAGK-KQLYTYE------TMDF--WEQIKTPGMSLKCSG---LYLAQFRLTSPNLL--A-------SGDGTKNATII 293 (379)
Q Consensus 235 l~~l~~~-~~v~~~~------~~~~--w~~i~t~~d~~~a~~---~~l~~~~~~~~~~~--~-------~~~~~~~~~i~ 293 (379)
++.++++ .++.+|. +.|+ |.+++++++|++++. ++........|... . ...+.+++.|.
T Consensus 202 i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~ 281 (456)
T PRK09451 202 IALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIE 281 (456)
T ss_pred HHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEe
Confidence 8888765 6899986 4566 788999999999863 22222221222211 0 01223556666
Q ss_pred cCeEECCCcEECCCCC-------------CCcEEeceEECCCCEECCCcEEeeccc--------ccccccceEECCCcEE
Q 016989 294 GDVYVHPSAKIHPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITILGEAVGV 352 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii~~~~~i 352 (379)
+++.||+++.|+++|. +++.+++|+||++|.||+++.|..+.+ ..+.+++|+||+++.+
T Consensus 282 ~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~ 361 (456)
T PRK09451 282 GNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKA 361 (456)
T ss_pred cCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCcc
Confidence 6666666666665543 333333444444444444444443311 0122333444444444
Q ss_pred CCCcEEeccEECCCceecccc
Q 016989 353 EDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 353 ~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++.+.+.+|.||+++.||+++
T Consensus 362 ~~~~~~g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 362 GHLTYLGDAEIGDNVNIGAGT 382 (456)
T ss_pred CccccccccEECCCCEEcCCe
Confidence 444444455555555555554
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=280.29 Aligned_cols=231 Identities=20% Similarity=0.342 Sum_probs=192.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EE-EEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IY-LVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----ii-v~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
++|+||||||| .||||+|+|..+||||+||+|||||+|+|+.+.. |+ |+++...+.+++|+++ ...+++++
T Consensus 2 ~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i 78 (292)
T PRK15480 2 KTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNL 78 (292)
T ss_pred CceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCcee
Confidence 46999999999 9999999999999999999999999999999986 55 4455555568899976 35688899
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
.+..++.+.|++++++.+.+++.++ +++++.||.++ +.++.++++.|.+.++++|+++.++ .++++||++..|+
T Consensus 79 ~y~~q~~~~Gta~Al~~a~~~i~~~---~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~d~ 153 (292)
T PRK15480 79 QYKVQPSPDGLAQAFIIGEEFIGGD---DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEFDQ 153 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEECC
Confidence 8998888999999999999999642 48888999887 8999999999988888899888877 4788999999984
Q ss_pred CCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 239 (379)
+++|..+.|||..+.++++++|+|+|++++++.++...++.+ +++ . + +|+++.++
T Consensus 154 -~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~-ge~---------------------~-i-td~~~~~l 208 (292)
T PRK15480 154 -NGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSAR-GEL---------------------E-I-TDINRIYM 208 (292)
T ss_pred -CCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCC-Cee---------------------E-h-HHHHHHHH
Confidence 789999999998888999999999999999999876544322 111 1 1 67777777
Q ss_pred CCceE-EEEEcccc-hhhcCCccchhhcchHHH
Q 016989 240 GKKQL-YTYETMDF-WEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 240 ~~~~v-~~~~~~~~-w~~i~t~~d~~~a~~~~l 270 (379)
++.++ ..+...|+ |.|+|||++|.+|++++.
T Consensus 209 ~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 209 EQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred hcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 66555 44566674 999999999999987775
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=272.67 Aligned_cols=228 Identities=39% Similarity=0.722 Sum_probs=192.0
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|++|||||| .|+||+|+|..+||+|+|++|+|||+|+++++.. ++|++++..+.+.+|+.......++.+.+.
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEec
Confidence 689999999 9999999999999999999999999999999985 666666666678899876434466777676
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+.++++.. .+++++++||++++.+++++++.|.++++++++++.+.+ ++..||++..++++++
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~~~~ 155 (233)
T cd06425 79 IETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE--DPSKYGVVVHDENTGR 155 (233)
T ss_pred cCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC--CccccCeEEEcCCCCE
Confidence 6677899999999999998642 235999999999999999999999999999999988763 5678999988843689
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCce
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~ 243 (379)
|..+.|||....++++++|+|+|++++|+.+..... + +..++++.++++.+
T Consensus 156 v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~--------------------------~---~~~~~~~~l~~~~~ 206 (233)
T cd06425 156 IERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPT--------------------------S---IEKEIFPKMASEGQ 206 (233)
T ss_pred EEEEEECCCCCCCCEEEEEEEEECHHHHHhcccCcc--------------------------c---chhhhHHHHHhcCC
Confidence 999999998767889999999999999988864110 0 12577888888889
Q ss_pred EEEEEcccchhhcCCccchhhcchHHH
Q 016989 244 LYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 244 v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+.+|+++|+|.|+|||++|++|++++|
T Consensus 207 v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 207 LYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 999999999999999999999987664
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=280.47 Aligned_cols=322 Identities=17% Similarity=0.337 Sum_probs=245.6
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC--Cc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL--RI 78 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~--~~ 78 (379)
...++||++|.. +.+||+|+|..+|+.|||++|.|||+|++++|.+ |+|++.....++.+|++...+.. ..
T Consensus 22 ~~rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~ 99 (673)
T KOG1461|consen 22 EHRLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSF 99 (673)
T ss_pred ccceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccc
Confidence 367899999999 9999999999999999999999999999999987 77777655556999998633322 22
Q ss_pred cEEEecCCCCCChHHHHHHHHHh-hccCCCCeEEEEcCCeeecCChHHHHHHHHh-----cCCceEEEEEEeCCCCCCce
Q 016989 79 PVRYLREDKPHGSAGALYNFRDL-IMEDNPSHIFLLNCDVCCSFPLPEMLDAHRN-----YGGMGTILVIKVSAESASQF 152 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~-i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~-----~~~~~ti~~~~~~~~~~~~~ 152 (379)
.+..+........+++++..-+. +.. ++|++++||++.+.+|.++++.|+. +++.+||++.+........-
T Consensus 100 ~v~ti~s~~~~S~GDamR~id~k~lit---gDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~ 176 (673)
T KOG1461|consen 100 IVVTICSGESRSVGDAMRDIDEKQLIT---GDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQ 176 (673)
T ss_pred eEEEEcCCCcCcHHHHHHHHHhcceee---cceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcc
Confidence 34444445667888888875332 222 3599999999999999999999944 34557888877632223344
Q ss_pred eEEEEeCCCCcEEEeee----cCC--------------CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhh
Q 016989 153 GELVADPDTNELLHYTE----KPE--------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFE 214 (379)
Q Consensus 153 g~v~~d~~~~~v~~~~e----kp~--------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 214 (379)
-.+.+|..+.++..|.+ +.. ....++.+++|-+|++.++.+|.+
T Consensus 177 ~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~d------------------ 238 (673)
T KOG1461|consen 177 VVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTD------------------ 238 (673)
T ss_pred eEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhh------------------
Confidence 45667766789998886 210 114779999999999999999975
Q ss_pred hhhhhccccccccccccccccccccC----CceEEEEEccc--chhhcCCccchhhcchHHHHhhh-hcCCccccCCC--
Q 016989 215 ALQSATRNLTTDFVRLDQDILSPLAG----KKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFR-LTSPNLLASGD-- 285 (379)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~d~l~~l~~----~~~v~~~~~~~--~w~~i~t~~d~~~a~~~~l~~~~-~~~~~~~~~~~-- 285 (379)
++||. ...|++..++. +.+|+++.... |...+.+...|...++.++.||. ++.|+.-+.+.
T Consensus 239 ---------NFDyq-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~ 308 (673)
T KOG1461|consen 239 ---------NFDYQ-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQT 308 (673)
T ss_pred ---------cccce-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCce
Confidence 33343 22566665442 57899999865 78899999999988899999987 45555433331
Q ss_pred ---------------CCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCc
Q 016989 286 ---------------GTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAV 350 (379)
Q Consensus 286 ---------------~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~ 350 (379)
...++.++..+.||.++.|+. ++.|.||+||+||+||.+++|.+ |.||.+|
T Consensus 309 ~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~----g~~I~NSVIG~~c~IgsN~~I~~----------S~iw~~v 374 (673)
T KOG1461|consen 309 FSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGS----GSKISNSVIGANCRIGSNVRIKN----------SFIWNNV 374 (673)
T ss_pred eeecccccccCccceehhhccccceEEecccccccC----CCeeecceecCCCEecCceEEee----------eeeecCc
Confidence 123456666666777777764 56799999999999999999998 9999999
Q ss_pred EECCCcEEeccEECCCceeccccc
Q 016989 351 GVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 351 ~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+||+||.|.+|+|++++.|++++.
T Consensus 375 ~Igdnc~I~~aii~d~v~i~~~~~ 398 (673)
T KOG1461|consen 375 TIGDNCRIDHAIICDDVKIGEGAI 398 (673)
T ss_pred EECCCceEeeeEeecCcEeCCCcc
Confidence 999999999999999999999987
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=293.45 Aligned_cols=310 Identities=21% Similarity=0.310 Sum_probs=206.0
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|+||||||| +|+||++ .+||+|+|++|+|||+|+++.+.+ +++++.+..+.+.+++.+ ++ +.+.
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~----~~--i~~~ 69 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN----RD--VNWV 69 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC----CC--cEEE
Confidence 689999999 9999998 789999999999999999999986 555555555567777764 23 3344
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
.+....|++++++.++++++.+ ++|++++||.++ +.++.++++.|.+. ..++++.+. .++..|+.+..++ +
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~~--~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~g~v~~d~-~ 142 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTGYGRIIREN-D 142 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCCC--CcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCCCCEEEEcC-C
Confidence 4555679999999999998642 469999999965 66799999988764 366666665 3566788888874 6
Q ss_pred CcEEEeeecCCCc----ccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccc
Q 016989 162 NELLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (379)
Q Consensus 162 ~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (379)
++|..+.|||... ...+.++|+|+|++++ ++.+........+++ ++ + .++++
T Consensus 143 g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e---------------------~~-~-~~~~~ 199 (451)
T TIGR01173 143 GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGE---------------------YY-L-TDVIA 199 (451)
T ss_pred CCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCc---------------------Ee-H-HHHHH
Confidence 7899999986532 2357899999999987 455654322111111 11 1 57777
Q ss_pred cccCC-ceEEEEEcccc--hhhcCCccchhhcchHHHHhhhh--cCCc--c------ccCC--------CCCCCeEEecC
Q 016989 237 PLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRL--TSPN--L------LASG--------DGTKNATIIGD 295 (379)
Q Consensus 237 ~l~~~-~~v~~~~~~~~--w~~i~t~~d~~~a~~~~l~~~~~--~~~~--~------~~~~--------~~~~~~~i~~~ 295 (379)
.++++ .++++|+.+++ |.++++|+++.+++.++..+... ..++ + ...+ .+.+++.|.++
T Consensus 200 ~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~ 279 (451)
T TIGR01173 200 LAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGK 279 (451)
T ss_pred HHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCc
Confidence 77655 68999999887 89999999998876655432110 0000 0 0000 11233334444
Q ss_pred eEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 296 VYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
+.||+++.|+ ++|.|.+++||++|.|+++|+|.+ |+|+++|.||++|+|. +++|++++.|++++
T Consensus 280 ~~ig~~~~I~----~~~~i~~~~i~~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~ 344 (451)
T TIGR01173 280 VKIGDDVVIG----PGCVIKNSVIGSNVVIKAYSVLEG----------SEIGEGCDVGPFARLRPGSVLGAGVHIGNFV 344 (451)
T ss_pred eEECCCCEEC----CCcEEeeeEecCCCEEeeecEEec----------ccccCCcEECCeeEECCCCEECCCcEEccce
Confidence 4444444444 344566666666666666666655 5555555555555554 45555555555443
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=274.04 Aligned_cols=234 Identities=32% Similarity=0.588 Sum_probs=190.0
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|||||||| .||||+|+|..+||||+|++|+ |||+|+|+.+.. ++|++.+..+.+.+|+++. ..+++++.+
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~~ 77 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIEY 77 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccc-cccccccee
Confidence 69999999 9999999999999999999999 999999999986 5566656667799999873 456778888
Q ss_pred ecCCCCCChHHHHHHHHHhhccCC-CCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~-~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
+.++...|++++++.+.+.+..+. +++|++++||++++.++.++++.|.++++++++.+...+..+++.||.+..|+ +
T Consensus 78 i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~-~ 156 (248)
T PF00483_consen 78 IVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDE-D 156 (248)
T ss_dssp EEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEET-T
T ss_pred eecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeecc-c
Confidence 888888999999999999998652 34599999999999999999999999888543333333335789999999994 7
Q ss_pred CcEEEeeecCCCcc-cceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 162 NELLHYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 162 ~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
++|..+.|||.... +.++++|+|+|++++|+.+.+.......+ .++. .|+++.+++
T Consensus 157 ~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~--------------------~~~l---~d~i~~~~~ 213 (248)
T PF00483_consen 157 GRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARG--------------------EDFL---TDAIPKLLE 213 (248)
T ss_dssp SEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTS--------------------SHHH---HHHHHHHHH
T ss_pred eeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchh--------------------hhHH---HHHHHHHHH
Confidence 89999999999776 88999999999999998884321111111 1111 678888876
Q ss_pred Cc-eEEEEEccc--chhhcCCccchhhcchHHH
Q 016989 241 KK-QLYTYETMD--FWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 241 ~~-~v~~~~~~~--~w~~i~t~~d~~~a~~~~l 270 (379)
+. .+.++...+ +|.|+|+|++|++|++.++
T Consensus 214 ~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 214 QGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp TTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 64 677889888 7999999999999998765
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=274.03 Aligned_cols=232 Identities=19% Similarity=0.275 Sum_probs=186.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhc--------
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS-------- 73 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~-------- 73 (379)
.+|+||||||| .||||+|+|..+||||+||+|||||+|+++++.+ |+|++++..+.+.+|++...
T Consensus 2 ~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 2 TNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 57999999999 9999999999999999999999999999999986 77777777777999886310
Q ss_pred -------------ccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--------CChHHHHHHHHh
Q 016989 74 -------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHRN 132 (379)
Q Consensus 74 -------------~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--------~dl~~~l~~~~~ 132 (379)
..+++++.++.|+.++|++++++.+++++.+ ++|+++.||++++ .|++++++.|.+
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~---~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCC---CCEEEEECCeeccCccccccchhHHHHHHHHHH
Confidence 0135677888888899999999999999953 3589999999885 489999999988
Q ss_pred cCCceEEEEEEeCCCCCCceeEEEEeC---CCC---cEEEeeecCCCc---ccceeeeeEEEeCHhhHHHhhcccccccc
Q 016989 133 YGGMGTILVIKVSAESASQFGELVADP---DTN---ELLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (379)
Q Consensus 133 ~~~~~ti~~~~~~~~~~~~~g~v~~d~---~~~---~v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~~~~~ 203 (379)
.+++. +++.... +++.+||.+..++ +++ +|..+.|||..+ .++++++|+|+|++++|+.+.+..+...
T Consensus 157 ~~~~~-~~~~~~~-~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~- 233 (297)
T PRK10122 157 TGRSQ-VLAKRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAW- 233 (297)
T ss_pred hCCcE-EEEEECC-CCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCC-
Confidence 87764 4444433 3788999998852 244 688999998644 3789999999999999999876332111
Q ss_pred chhhhhcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+++ + | .|+++.++++.++.+|.++|+|.|+|+|++|++|+..+
T Consensus 234 ~e~--------------------~--l-td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 234 GRI--------------------Q--L-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred Cee--------------------e--H-HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 111 1 1 68888888888999999999999999999999998655
|
|
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=273.41 Aligned_cols=228 Identities=20% Similarity=0.310 Sum_probs=188.0
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EE-EEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IY-LVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----ii-v~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+||||||| .||||+|+|..+||+|+||+|||||+|+++.+.. |+ |++++..+.+++++++ ...+++++.+.
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~ 77 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYA 77 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEE
Confidence 58999999 9999999999999999999999999999999986 55 4445555668888876 35688899998
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
.++.+.|++++++.+.+++.+ +.++++.||+++ +.++.++++.|.+.++++++++.+++ ++.+||++..|+ ++
T Consensus 78 ~q~~~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~-~g 151 (286)
T TIGR01207 78 VQPSPDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDS-NG 151 (286)
T ss_pred EccCCCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECC-CC
Confidence 888899999999999999964 258888999887 88999999999888888899888874 678999999984 78
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCc
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (379)
+|..+.|||..+.++++++|+|+|++++++.+++..++.+ +++ . + +|+++.++++.
T Consensus 152 ~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~-ge~---------------------e-i-tdv~~~~l~~g 207 (286)
T TIGR01207 152 RAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSAR-GEL---------------------E-I-TDLNRVYLEEG 207 (286)
T ss_pred eEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCC-CcE---------------------e-H-HHHHHHHHHcC
Confidence 9999999998888899999999999999998876543221 111 1 1 57787777665
Q ss_pred eEEEEEc-ccc-hhhcCCccchhhcchHHH
Q 016989 243 QLYTYET-MDF-WEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 243 ~v~~~~~-~~~-w~~i~t~~d~~~a~~~~l 270 (379)
++.++.. .|+ |.|+|||++|++|++++.
T Consensus 208 ~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 208 RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 5544444 576 999999999999986664
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=265.40 Aligned_cols=228 Identities=22% Similarity=0.324 Sum_probs=186.3
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEE-cccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLV-GFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~-~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+++++.. |+++ ++...+.+.+|++. ...+++++.+
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~ 77 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITY 77 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEE
Confidence 689999999 9999999999999999999999999999999986 5554 44444568888875 3456777877
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
..+....|++++++.++++++. +.+++++||.++ +.++.++++.|.+.++++++++.+.. ++..||.+..++ +
T Consensus 78 ~~~~~~~G~~~al~~a~~~~~~---~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~-~ 151 (240)
T cd02538 78 AVQPKPGGLAQAFIIGEEFIGD---DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN--DPERYGVVEFDE-N 151 (240)
T ss_pred eeCCCCCCHHHHHHHHHHhcCC---CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC--chhcCceEEecC-C
Confidence 7777788999999999998864 359999999987 77899999999888888888888763 567899999984 6
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|..+.|||......+.++|+|+|++++|+.+.+..+.. +.++. + .++++.++++
T Consensus 152 g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~----------------------~~~~~-l-~d~~~~l~~~ 207 (240)
T cd02538 152 GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSA----------------------RGELE-I-TDVNNEYLEK 207 (240)
T ss_pred CcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCC----------------------CCeEE-h-HHHHHHHHHh
Confidence 8999999999877788999999999999998886543211 11111 1 5788888777
Q ss_pred ceEEEEEcc--cchhhcCCccchhhcchHH
Q 016989 242 KQLYTYETM--DFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 242 ~~v~~~~~~--~~w~~i~t~~d~~~a~~~~ 269 (379)
.++.++.++ |+|.+||||++|++|++++
T Consensus 208 g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 208 GKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 677676665 9999999999999998765
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=285.13 Aligned_cols=226 Identities=21% Similarity=0.359 Sum_probs=167.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
.++||||||| .|+||++ .+||+|+|++|+|||+|+++++.+ ++++..+..+.+.+++.. .+.+
T Consensus 2 ~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-------~~~~ 69 (458)
T PRK14354 2 NRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-------RSEF 69 (458)
T ss_pred CceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-------CcEE
Confidence 4689999999 9999986 799999999999999999999986 555545555557777653 1234
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
..+....|++++++.++++++.. .+.+++++||.++ +.++.++++.|.+.+++.++++... .++..|+.+..++
T Consensus 70 ~~~~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~~~g~v~~d~- 145 (458)
T PRK14354 70 ALQEEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPTGYGRIIRNE- 145 (458)
T ss_pred EEcCCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCCCceEEEEcC-
Confidence 44566789999999999988642 2469999999965 6789999999987777788777665 3567788877774
Q ss_pred CCcEEEeeecCCC----cccceeeeeEEEeCHh-hHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccc
Q 016989 161 TNELLHYTEKPET----FVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (379)
Q Consensus 161 ~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (379)
+++|..+.|||.. ....+.++|+|+|+++ +++.+++.......+++ . + .+++
T Consensus 146 ~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~---------------------~-~-~d~~ 202 (458)
T PRK14354 146 NGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEY---------------------Y-L-TDVI 202 (458)
T ss_pred CCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE---------------------e-H-HHHH
Confidence 6789999998642 2246789999999986 56777654321111111 1 1 5666
Q ss_pred ccccC-CceEEEEEcccch--hhcCCccchhhcchHHHHh
Q 016989 236 SPLAG-KKQLYTYETMDFW--EQIKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 236 ~~l~~-~~~v~~~~~~~~w--~~i~t~~d~~~a~~~~l~~ 272 (379)
+.+.+ +.++++|.++++| .++++++||..|+.++..+
T Consensus 203 ~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~ 242 (458)
T PRK14354 203 EILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRR 242 (458)
T ss_pred HHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHH
Confidence 66654 4689999998765 5777999999887665443
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=282.25 Aligned_cols=313 Identities=21% Similarity=0.291 Sum_probs=211.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
|+||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++.. .+.+..
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~~~i~vv~~~~~~~i~~~~~~-------~~~~~~ 68 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVAQKVGVVLGHEAELVKKLLPE-------WVKIFL 68 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhccc-------ccEEEe
Confidence 689999999 9999986 789999999999999999999985 666666555567776642 133445
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
++..+|++++++.+++++..+ ++|++++||.++ +.+++++++.|.++++++++++.+.. ++..|+.+..+ ++
T Consensus 69 ~~~~~g~~~ai~~a~~~l~~~--~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~v~~d--~g 142 (448)
T PRK14357 69 QEEQLGTAHAVMCARDFIEPG--DDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DPTGYGRIIRD--GG 142 (448)
T ss_pred cCCCCChHHHHHHHHHhcCcC--CeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCcEEEEEc--CC
Confidence 567789999999999988532 579999999965 67899999999888888999888763 67789988776 56
Q ss_pred cEEEeeecCCCc----ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 163 ELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 163 ~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
++ .+.|||..+ ..++.++|+|+|++++| +.+++..+....+++ + + .|+++.
T Consensus 143 ~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~---------------------~-~-~d~i~~ 198 (448)
T PRK14357 143 KY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEY---------------------Y-L-TDAVNF 198 (448)
T ss_pred eE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeE---------------------E-H-HHHHHh
Confidence 78 777765422 13589999999999975 556543221111111 1 1 466655
Q ss_pred ccCCceEEEEEcccchh--hcCCccchhhcchHHHHhhhhcCCccccCC--CCCC-CeEEecCeEECCCcEECCCCCCCc
Q 016989 238 LAGKKQLYTYETMDFWE--QIKTPGMSLKCSGLYLAQFRLTSPNLLASG--DGTK-NATIIGDVYVHPSAKIHPTAKENA 312 (379)
Q Consensus 238 l~~~~~v~~~~~~~~w~--~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~--~~~~-~~~i~~~~~i~~~~~i~~~~~~~~ 312 (379)
+ .++.+|...++|. .+++++++..+..++...... .+...+ ..++ .+.+++++.||+++.|++++.
T Consensus 199 ~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~--- 269 (448)
T PRK14357 199 A---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILE---ELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTF--- 269 (448)
T ss_pred h---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHH---HHHHcCCEEeCCCcEEEccceEECCCcEEcCCcE---
Confidence 5 3588888888855 566999988776555332110 010011 0112 346666666666666666543
Q ss_pred EEe-ceEECCCCEECCCcEEeeccc------ccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 313 VVT-NAIVGWKSSIGRWSRVQAEGD------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 313 ~i~-~s~ig~~~~ig~~~~i~~~~~------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
|. ++.||++|.|+++|.|.+..+ ..+.+++|+|++++.|++++.|. +++|+++++|++++
T Consensus 270 -I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~ 337 (448)
T PRK14357 270 -IEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFV 337 (448)
T ss_pred -EEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCce
Confidence 33 455555555555544332111 12334557777777777777774 57777777777654
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=271.66 Aligned_cols=223 Identities=21% Similarity=0.394 Sum_probs=162.4
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+.+|||||| .|+||++ .+||+|+|++|+|||+|++++|.+ ++|++.+..+.+.+++... + .+.++
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~-~i~~v 71 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL----P-GLEFV 71 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc----C-CeEEE
Confidence 679999999 9999987 789999999999999999999975 4444444444577777532 1 34455
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
.+....|++++++.++++++.. .+++++++||.++ +.+++++++.|.+.+++++++..+. +++..|+.+..++ +
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d~-~ 147 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPKGYGRVFCDG-N 147 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCCCccEEEECC-C
Confidence 5566789999999999888632 2469999999976 6789999999988888787766654 3567799888874 7
Q ss_pred CcEEEeeecCC----CcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccccccccccccc
Q 016989 162 NELLHYTEKPE----TFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (379)
Q Consensus 162 ~~v~~~~ekp~----~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (379)
++|..+.|||. ...+++.++|+|+|+++.|. ++++........++ +. +|.++
T Consensus 148 g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~--------------------~~---td~i~ 204 (450)
T PRK14360 148 NLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEY--------------------YL---TDTVS 204 (450)
T ss_pred CCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCce--------------------eH---HHHHH
Confidence 89999999974 23467899999999987764 44443322111111 11 45555
Q ss_pred cccCCceEEEEEcccch--hhcCCccchhhcchHHHH
Q 016989 237 PLAGKKQLYTYETMDFW--EQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 237 ~l~~~~~v~~~~~~~~w--~~i~t~~d~~~a~~~~l~ 271 (379)
.+. .+..+.+.++| ..+++++++..+..++..
T Consensus 205 ~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 205 LLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred HHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 552 35666666665 459999999988766544
|
|
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=254.86 Aligned_cols=221 Identities=23% Similarity=0.417 Sum_probs=179.4
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc---cCCc---
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI--- 78 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~---~~~~--- 78 (379)
+||||||| .|+||+|+|..+||||+||+|+|||+|+++.+.+ |+|++++..+.+.+|+++... .+.+
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 78 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEec
Confidence 58999999 9999999999999999999999999999999976 666666666678888875321 1111
Q ss_pred --------------cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEe
Q 016989 79 --------------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 79 --------------~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
.+.+..+...+||+++++.+++++.+ ++|++++||++++.|+.++++.|.+.++++|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~---e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~- 154 (254)
T TIGR02623 79 DNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDD---EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ- 154 (254)
T ss_pred ccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCC---CeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec-
Confidence 12233444668999999999999862 469999999999999999999999988988877543
Q ss_pred CCCCCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccc
Q 016989 145 SAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLT 224 (379)
Q Consensus 145 ~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (379)
++..||.+..| +++|..|.|||... +.++++|+|+|++++|+.+.+..
T Consensus 155 ---~~~~yG~v~~d--~~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~-------------------------- 202 (254)
T TIGR02623 155 ---PPGRFGALDLE--GEQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDA-------------------------- 202 (254)
T ss_pred ---CCCcccEEEEC--CCeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccC--------------------------
Confidence 46789998887 35899999998643 67899999999999998776421
Q ss_pred cccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 225 TDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 225 ~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
.++ ..|+++.++++.++.+|.++|+|.++|||++|.+++.++.+
T Consensus 203 ~~~---~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 203 TVW---EQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred chh---hhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHc
Confidence 111 16888888888899999999999999999999999876653
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=257.70 Aligned_cols=230 Identities=22% Similarity=0.295 Sum_probs=185.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC-----
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL----- 76 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~----- 76 (379)
+.|+||||||| .|+||+|+|..+||+|+|++|+|+|+|+++++.+ |+|++++..+.+.+|++.. ..+
T Consensus 7 ~~~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~ 83 (302)
T PRK13389 7 KVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLE 83 (302)
T ss_pred cceEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhh
Confidence 46899999999 9999999999999999999999999999999986 6677776667789998642 111
Q ss_pred -----------------CccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--------CChHHHHHHHH
Q 016989 77 -----------------RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (379)
Q Consensus 77 -----------------~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--------~dl~~~l~~~~ 131 (379)
+..+.+..+....|++++++.+.+++.+ ++|++++||++++ .++.++++.|.
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~---~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~ 160 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEMIRRFD 160 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCC---CCEEEEeCcceecccccccccccHHHHHHHHH
Confidence 2345566677789999999999998753 3599999999984 69999999998
Q ss_pred hcCCceEEEEEEeCCCCCCceeEEEEeC------CCCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhcccccccc
Q 016989 132 NYGGMGTILVIKVSAESASQFGELVADP------DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (379)
Q Consensus 132 ~~~~~~ti~~~~~~~~~~~~~g~v~~d~------~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~ 203 (379)
+.+++ ++++.+. +++..||.+..+. ++++|..+.|||. ...++++++|+|+|++++|+.+++..+. .+
T Consensus 161 ~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~-~~ 236 (302)
T PRK13389 161 ETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPG-AG 236 (302)
T ss_pred hcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCC-CC
Confidence 88775 6777665 4678999998752 1357999999997 3457899999999999999988754321 11
Q ss_pred chhhhhcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+++ + + .|+++.++++.++.+|.++|+|.|+|||++|++|+..+
T Consensus 237 ~e~--------------------~--l-~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 237 DEI--------------------Q--L-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred Cee--------------------e--H-HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 111 1 1 68888888888999999999999999999999997554
|
|
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=255.88 Aligned_cols=227 Identities=25% Similarity=0.330 Sum_probs=178.9
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc---------
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--------- 74 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~--------- 74 (379)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+++++.+ ++|++++..+++.+|++....
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRG 78 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhh
Confidence 689999999 9999999999999999999999999999999986 677777666779998863100
Q ss_pred -----------cCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-C--ChHHHHHHHHhcCCceEEE
Q 016989 75 -----------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-F--PLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 75 -----------~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~--dl~~~l~~~~~~~~~~ti~ 140 (379)
.....+.+..+....|++++++.+++++.+ +.|++++||.++. . ++.++++.|.++++++ ++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~ 154 (260)
T TIGR01099 79 KEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGD---EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IA 154 (260)
T ss_pred hHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCC---CCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EE
Confidence 001345566667789999999999998843 3699999999994 3 7999999998888765 55
Q ss_pred EEEeCCCCCCceeEEEEeC---CCCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhh
Q 016989 141 VIKVSAESASQFGELVADP---DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (379)
Q Consensus 141 ~~~~~~~~~~~~g~v~~d~---~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 215 (379)
+...+..++..||.+..+. ++++|..+.|||. ...++++++|+|+|++++|+.+.....+. .+++
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~-~~~~--------- 224 (260)
T TIGR01099 155 VEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGA-GGEI--------- 224 (260)
T ss_pred EEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCC-CCce---------
Confidence 5555445678999988862 2369999999984 34567899999999999998886432211 1111
Q ss_pred hhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhc
Q 016989 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
+ + .|+++.++++.++++|+++|+|.|+|||++|++|
T Consensus 225 -----------~--l-~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 225 -----------Q--L-TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred -----------e--H-HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 1 1 5788888877899999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=255.92 Aligned_cols=231 Identities=24% Similarity=0.319 Sum_probs=182.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc------c--
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------E-- 75 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~------~-- 75 (379)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+++++.+ |+|++++..+++.+|++.... .
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKG 78 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcc
Confidence 689999999 9999999999999999999999999999999986 667766666678888864210 0
Q ss_pred ------------CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-C--ChHHHHHHHHhcCCceEEE
Q 016989 76 ------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-F--PLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 76 ------------~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~--dl~~~l~~~~~~~~~~ti~ 140 (379)
.+.++.++.++...|++++++.++++++. +.|++++||.++. . +++++++.|.+.+++ +++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~ 154 (267)
T cd02541 79 KTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIA 154 (267)
T ss_pred cHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEE
Confidence 13466677777789999999999999864 3599999999994 3 499999999877664 455
Q ss_pred EEEeCCCCCCceeEEEEeCC---CCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhh
Q 016989 141 VIKVSAESASQFGELVADPD---TNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (379)
Q Consensus 141 ~~~~~~~~~~~~g~v~~d~~---~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 215 (379)
+.+.+..++..||.+..|++ .++|..+.|||. ...+.++++|+|+|++++|+.+.+...+ ..++
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~-~~~e---------- 223 (267)
T cd02541 155 VEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPG-KGGE---------- 223 (267)
T ss_pred EEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCC-CCCc----------
Confidence 55554456788999988741 248999999986 3557889999999999999888652211 1111
Q ss_pred hhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+. + .++++.++++.++++|+++|+|.++|||++|++|+..+
T Consensus 224 -----------~~-~-~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 224 -----------IQ-L-TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred -----------EE-H-HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 11 1 57888888777999999999999999999999998543
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=249.21 Aligned_cols=229 Identities=25% Similarity=0.428 Sum_probs=187.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.+ ++|++....+.+.++++.. ..++.++.++
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYI 77 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEE
Confidence 689999999 9999999999999999999999999999999975 6666555666788888753 3466777777
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+.+++.. +++++++||++++.++.++++.|.+.++++++++.+.+ ++..|+.+..+ +++
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~~---~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d--~~~ 150 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLGD---EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--DPRRFGVAVVD--DGR 150 (236)
T ss_pred ECCCCCChHHHHHHHHHhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--CcccceEEEEc--CCe
Confidence 777788999999999998862 35999999999999999999999888888888888763 56778988877 459
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC-Cc
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG-KK 242 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~-~~ 242 (379)
|..+.|||......+.++|+|+|++++++.+....+... + .+. + .++++.+++ +.
T Consensus 151 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~-~---------------------~~~-~-~d~~~~~i~~g~ 206 (236)
T cd04189 151 IVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWR-G---------------------ELE-I-TDAIQWLIDRGR 206 (236)
T ss_pred EEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCC-C---------------------eEE-H-HHHHHHHHHcCC
Confidence 999999987666788999999999999988754322111 1 111 1 577777764 46
Q ss_pred eEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
+|.+|+++++|.++|||++|.+++..++.
T Consensus 207 ~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 207 RVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred cEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 79999999999999999999999877653
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=242.88 Aligned_cols=213 Identities=18% Similarity=0.308 Sum_probs=176.5
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
+||||||| .|+||+|+|+.+||||+|++|+|||+|+++++.+ |+|++++..+.+.+|+.. ..+++.+.+..
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISD 76 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEec
Confidence 58999999 9999999999999999999999999999999986 777777766779999875 34677787776
Q ss_pred CC-CCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHH--hcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 85 ED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHR--NYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 85 ~~-~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~--~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
+. +..|++++++.+++++.+ ++|++++||++++.++.++++.|. +.++.+++...+. +....||.+..++ +
T Consensus 77 ~~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d~-~ 150 (221)
T cd06422 77 EPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGVGDFSLDA-D 150 (221)
T ss_pred CCCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCcceEEECC-C
Confidence 65 678999999999999864 369999999999999999999997 4555566655554 3567889888884 6
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|..+.+||. ..+.++|+|+|+++++..+.+. ++ . + .++++.++++
T Consensus 151 ~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~-------~~-------------------~---~-~d~~~~l~~~ 197 (221)
T cd06422 151 GRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG-------KF-------------------S---L-NPLWDRAIAA 197 (221)
T ss_pred CcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC-------cc-------------------c---H-HHHHHHHHHc
Confidence 89999999875 3789999999999999877531 00 0 1 5777878777
Q ss_pred ceEEEEEcccchhhcCCccchhhc
Q 016989 242 KQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
.++.+|.++|+|.+++||++|.+|
T Consensus 198 ~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 198 GRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred CCeEEEecCCEEEcCCCHHHHhhC
Confidence 889999999999999999999865
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=236.53 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=178.4
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+++... ..++.++.+..+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIE 77 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEEC
Confidence 6999999 9999999999999999999999999999999976 6666665556688888642 224566666666
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
....|++++++.+++.+.. +++++++||++++.++.++++.|.+.++++++++.+.. ++..|+.+..++ +++|.
T Consensus 78 ~~~~G~~~~l~~a~~~~~~---~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~-~~~v~ 151 (223)
T cd06915 78 PEPLGTGGAIKNALPKLPE---DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP--DASRYGNVTVDG-DGRVI 151 (223)
T ss_pred CCCCcchHHHHHHHhhcCC---CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC--CCCcceeEEECC-CCeEE
Confidence 6788999999999998843 46999999999999999999999888888888887763 457888888874 68999
Q ss_pred EeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCceEE
Q 016989 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (379)
Q Consensus 166 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~ 245 (379)
.+.+||......+.++|+|+|++++|+.+..... .+ ..++++.++++.++.
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~~--------------------------~~---~~~~~~~l~~~~~v~ 202 (223)
T cd06915 152 AFVEKGPGAAPGLINGGVYLLRKEILAEIPADAF--------------------------SL---EADVLPALVKRGRLY 202 (223)
T ss_pred EEEeCCCCCCCCcEEEEEEEECHHHHhhCCccCC--------------------------Ch---HHHHHHHHHhcCcEE
Confidence 9999987656788999999999999987753210 01 156777777666999
Q ss_pred EEEcccchhhcCCccchhhc
Q 016989 246 TYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 246 ~~~~~~~w~~i~t~~d~~~a 265 (379)
+|+++++|.+|+|++||.+|
T Consensus 203 ~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 203 GFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred EEecCCeEEecCCHHHHHhh
Confidence 99999999999999999876
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-31 Score=240.14 Aligned_cols=221 Identities=25% Similarity=0.440 Sum_probs=177.3
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhccc-CCccEE---
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE-LRIPVR--- 81 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~-~~~~i~--- 81 (379)
||||||| .|+||+|+|..+||||+|++|+|||+|+++.+.+ |+|++.+..+.+++|+++..+. .++++.
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGT 78 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecc
Confidence 6999999 9999999999999999999999999999999986 6666665666799998764211 111111
Q ss_pred ----Eec------------CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeC
Q 016989 82 ----YLR------------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS 145 (379)
Q Consensus 82 ----~~~------------~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~ 145 (379)
+.. +...+|++++++.+++++.++ ++|++++||++++.++.++++.|...++++|+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~--~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-- 154 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD--ETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-- 154 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcCCC--CeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--
Confidence 111 223577999999999998642 469999999999999999999999888888887653
Q ss_pred CCCCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccc
Q 016989 146 AESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (379)
Q Consensus 146 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
.+..|+.+..++ +++|..+.|||... +.++++|+|+|++++++.+.+. . .
T Consensus 155 --~~~~~g~v~~d~-~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~-----~---------------------~ 204 (253)
T cd02524 155 --PPGRFGELDLDD-DGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD-----D---------------------T 204 (253)
T ss_pred --CCCcccEEEECC-CCCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc-----c---------------------c
Confidence 357889888885 68999999998754 5689999999999999887642 0 0
Q ss_pred ccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
++ ..++++.++++.++.+|+++|+|.+|+|+++|.++..++.
T Consensus 205 ~~---~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 205 VF---EREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred hh---hHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHH
Confidence 11 1678888888889999999999999999999999987664
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=233.06 Aligned_cols=212 Identities=32% Similarity=0.576 Sum_probs=176.8
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. ++|++++..+.+.+++... ..++.++.++.+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeC
Confidence 6999999 9999999999999999999999999999999976 6666665556688888653 235677777776
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
....|++++++.+++.+.. ++|++++||++++.++.++++.|.++++++++++.+.+ ++..|+.+..++ +++|.
T Consensus 78 ~~~~g~~~al~~~~~~~~~---~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~-~~~v~ 151 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLGD---DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDD-DGRVT 151 (217)
T ss_pred CCCCccHHHHHHhhhhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEcC-CCcEE
Confidence 6778999999999998832 46999999999999999999999998988999988764 678899988885 68999
Q ss_pred EeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCceEE
Q 016989 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (379)
Q Consensus 166 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~ 245 (379)
.+.|||......+.++|+|+|++++++.+..... ++ ..+. .++++.++++.+++
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~---~~--------------------~~~~---~~~~~~l~~~~~v~ 205 (217)
T cd04181 152 RFVEKPTLPESNLANAGIYIFEPEILDYIPEILP---RG--------------------EDEL---TDAIPLLIEEGKVY 205 (217)
T ss_pred EEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC---cc--------------------cccH---HHHHHHHHhcCCEE
Confidence 9999987666789999999999999988865322 11 1121 68888888778999
Q ss_pred EEEcccchhhcC
Q 016989 246 TYETMDFWEQIK 257 (379)
Q Consensus 246 ~~~~~~~w~~i~ 257 (379)
+|+++|+|.++|
T Consensus 206 ~~~~~g~w~dig 217 (217)
T cd04181 206 GYPVDGYWLDIG 217 (217)
T ss_pred EEEcCCEEecCC
Confidence 999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=231.21 Aligned_cols=214 Identities=28% Similarity=0.513 Sum_probs=173.7
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.. ++|++++..+.+.+|+.+. ..++.++.++.+
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVRE 77 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEEC
Confidence 6999999 9999999999999999999999999999999986 6777776666788888752 345677777766
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
+.+.|+++++..+.+... ++|++++||.+++.++.++++.|...++++++++.+.. ....||.+..+ +++|.
T Consensus 78 ~~~~g~~~~l~~~~~~~~----~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d--~~~v~ 149 (220)
T cd06426 78 DKPLGTAGALSLLPEKPT----DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYGVVETE--GGRIT 149 (220)
T ss_pred CCCCcchHHHHHHHhhCC----CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEC--CCEEE
Confidence 677899999987766542 35999999998899999999999888888888887653 44678888886 37999
Q ss_pred EeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC-ceE
Q 016989 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQL 244 (379)
Q Consensus 166 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v 244 (379)
.+.|||.. ..++++|+|+|++++++.+.+. +++ .+ +++++.++++ .++
T Consensus 150 ~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~------~~~----------------------~l-~~~~~~~i~~~~~i 198 (220)
T cd06426 150 SIEEKPTH--SFLVNAGIYVLEPEVLDLIPKN------EFF----------------------DM-PDLIEKLIKEGKKV 198 (220)
T ss_pred EEEECCCC--CCeEEEEEEEEcHHHHhhcCCC------CCc----------------------CH-HHHHHHHHHCCCcE
Confidence 99999764 5688999999999998877531 010 11 5677777654 579
Q ss_pred EEEEcccchhhcCCccchhhcc
Q 016989 245 YTYETMDFWEQIKTPGMSLKCS 266 (379)
Q Consensus 245 ~~~~~~~~w~~i~t~~d~~~a~ 266 (379)
.+|+++++|.+++||++|.+|+
T Consensus 199 ~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 199 GVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEeCCeEEeCCCHHHHHhhC
Confidence 9999999999999999999874
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=223.84 Aligned_cols=235 Identities=22% Similarity=0.301 Sum_probs=193.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhc------
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------ 73 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~------ 73 (379)
|++..+|||+||| .||||.|.|+..||-||||.+||+|+|+++.+.. |+++++.....+++|+....
T Consensus 1 ~~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 1 MMKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CCcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 4567899999999 9999999999999999999999999999999986 66666666667888764210
Q ss_pred ------------cc--CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecC---ChHHHHHHHHhcCCc
Q 016989 74 ------------NE--LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGM 136 (379)
Q Consensus 74 ------------~~--~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~---dl~~~l~~~~~~~~~ 136 (379)
++ -..++.|++|.++.|.++|++.|.+++.++ +|.|+.+|.++.. .++.+++.+.+.+.
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~E---pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~- 154 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE---PFAVLLPDDLVDSEKPCLKQMIELYEETGG- 154 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCC---ceEEEeCCeeecCCchHHHHHHHHHHHhCC-
Confidence 00 135688999999999999999999999864 6999999999932 38889999988877
Q ss_pred eEEEEEEeCCCCCCceeEEE----EeCCCCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhc
Q 016989 137 GTILVIKVSAESASQFGELV----ADPDTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRV 210 (379)
Q Consensus 137 ~ti~~~~~~~~~~~~~g~v~----~d~~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~ 210 (379)
.++++.+++..+.+.||++. .+..-.+|..+.|||. ..++++...|-|+|+|++|+.|++..+.. ++|. |+
T Consensus 155 svi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~-ggEi--QL 231 (291)
T COG1210 155 SVIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGA-GGEI--QL 231 (291)
T ss_pred cEEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCC-CCEe--eH
Confidence 57888888878899999887 3311148999999984 67899999999999999999999865432 2222 11
Q ss_pred chhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 211 SSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+|.+..|++...+++|.+.|..+|+|++..|++|+..|
T Consensus 232 ---------------------TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~ 269 (291)
T COG1210 232 ---------------------TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEF 269 (291)
T ss_pred ---------------------HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHH
Confidence 78888888889999999999999999999999998444
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=214.79 Aligned_cols=176 Identities=23% Similarity=0.439 Sum_probs=140.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCC-----c
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR-----I 78 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~-----~ 78 (379)
++||||||| .|+||+|+|..+||||+||+|+|||+|+++++.+ |+|++.+..+.+++|+++.. .++ .
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSK-WSKPKSSLM 77 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcc-ccccccCcc
Confidence 589999999 9999999999999999999999999999999986 66666666677999998642 222 3
Q ss_pred cEEEecCCCCCChHHHHHHH--HHhhccCCCCeEEEEcCCeeecCChHHHHHHHHh-----cCCceEEEEEEeCCCC---
Q 016989 79 PVRYLREDKPHGSAGALYNF--RDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRN-----YGGMGTILVIKVSAES--- 148 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~--~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~-----~~~~~ti~~~~~~~~~--- 148 (379)
.+.+..+++..|++++++.. ...+. ++|++++||++++.|+.++++.|++ +++++|+++.+.+...
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~~----~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~ 153 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLIR----GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTR 153 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhccccC----CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccc
Confidence 46666666777888888653 33342 3599999999999999999999987 3788898888875332
Q ss_pred -CCceeEEEEeCCCCcEEEeeecCCCc--------------------ccceeeeeEEEeCHhhH
Q 016989 149 -ASQFGELVADPDTNELLHYTEKPETF--------------------VSDLINCGVYVFTPDIF 191 (379)
Q Consensus 149 -~~~~g~v~~d~~~~~v~~~~ekp~~~--------------------~~~~~~~Giy~~~~~~l 191 (379)
...++++..++++++|+.+.|||..+ .+++.++|+|+|+++++
T Consensus 154 ~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 154 RTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred cCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 22367788876458999999997543 27899999999999874
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=214.50 Aligned_cols=221 Identities=21% Similarity=0.318 Sum_probs=162.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+|++.. .++.+.+..+
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~ 75 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPD 75 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcc
Confidence 6999999 9999999999999999999999999999999986 6666665666788888642 3444444434
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
....|++++++.+++++. +++++++||++++. ++++.|.+.+++.++++.+........++....+ ++++.
T Consensus 76 ~~~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 146 (229)
T cd02523 76 YAETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDD--AGVLL 146 (229)
T ss_pred hhhhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecC--ccceE
Confidence 446899999999999883 35999999999844 5677777778888888887433334455533332 36888
Q ss_pred EeeecCCCcc-cceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC--Cc
Q 016989 166 HYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG--KK 242 (379)
Q Consensus 166 ~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~--~~ 242 (379)
.+.+||.... ..+.++|+|+|++++++.+.+....... . ....+++ +++++.+++ +.
T Consensus 147 ~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~--------------~---~~~~~~~---~d~i~~l~~~~~~ 206 (229)
T cd02523 147 GIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIE--------------A---GRVNLYY---EDALQRLISEEGV 206 (229)
T ss_pred eecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHh--------------c---ccccccH---HHHHHHHHhhcCe
Confidence 9999886543 5688999999999998877643211100 0 0011222 688888776 45
Q ss_pred eEEEEEcccchhhcCCccchhhcc
Q 016989 243 QLYTYETMDFWEQIKTPGMSLKCS 266 (379)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~ 266 (379)
.+..+.. ++|.++|++++|.+|+
T Consensus 207 ~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 207 KVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eEEEcCC-CCEEEeCCHHHHHhhC
Confidence 5666666 8999999999998763
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=208.06 Aligned_cols=218 Identities=22% Similarity=0.360 Sum_probs=158.5
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccch---HHHHHHHHhhcccCCccEEE
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEE---REFALYVSSISNELRIPVRY 82 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~---~~i~~~l~~~~~~~~~~i~~ 82 (379)
+|||||| +|+||+|+|..+||||+|++|+|||+|+++.+.. +++++.... ..+..++... ..++.+.+
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE 76 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE
Confidence 4899999 9999999999999999999999999999999986 444443211 1123333221 12344533
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
.+..+.|++++++.++..+..+ ++|++++||++++.++.++++.|.+.+.+.++++... ....|+.+..|+ ++
T Consensus 77 -~~~~~~g~~~~l~~a~~~l~~~--~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d~-~~ 149 (231)
T cd04183 77 -LDGETLGAACTVLLAADLIDND--DPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLDE-NG 149 (231)
T ss_pred -eCCCCCcHHHHHHHHHhhcCCC--CCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEECC-CC
Confidence 3456889999999999988532 3699999999999999999998887777777666554 456799888885 78
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHh-hH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPD-IF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~-~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+|..+.+|+. .+.+.++|+|+|+++ .| +.+.+...... .....++ + .++++.+++
T Consensus 150 ~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~-------------------~~~~~~~-~-~d~i~~~~~ 206 (231)
T cd04183 150 RVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDD-------------------SVNGEFY-I-SPLYNELIL 206 (231)
T ss_pred CEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcc-------------------cccCcEE-E-hHHHHHHHH
Confidence 9999988843 367899999999986 43 55543111000 0011111 1 578888775
Q ss_pred C-ceEEEEEc-ccchhhcCCccch
Q 016989 241 K-KQLYTYET-MDFWEQIKTPGMS 262 (379)
Q Consensus 241 ~-~~v~~~~~-~~~w~~i~t~~d~ 262 (379)
+ .+|.+|.+ +++|.++|||++|
T Consensus 207 ~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 207 DGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cCCEEEEEEeccccEEEcCChHhc
Confidence 4 57999999 6899999999887
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=205.07 Aligned_cols=182 Identities=29% Similarity=0.531 Sum_probs=143.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCcc-----
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP----- 79 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~----- 79 (379)
||||||| .|+||+|+|...||+|+|++|+ |||+|+++.+.. ++|++.+..+.+.+|+.+. ..++.+
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGG 77 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCC
Confidence 6999999 9999999999999999999999 999999999986 6666666566688888753 334432
Q ss_pred EEEe------cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYL------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~------~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
+.+. .++...|++++++.+.+++.....++|++++||++++.++.++++.|.++++++|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 2222 23567899999999999986422357999999999999999999999988877777654
Q ss_pred EEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccccccccc
Q 016989 154 ELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (379)
Q Consensus 154 ~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (379)
+++|+|+|++++|. .++.... .++ .++ .+
T Consensus 147 -------------------------~~~g~yi~~~~~~~~~l~~~~~--~~~--------------------~~~---~~ 176 (200)
T cd02508 147 -------------------------ASMGIYIFSKDLLIELLEEDAA--DGS--------------------HDF---GK 176 (200)
T ss_pred -------------------------hcCEEEEEEHHHHHHHHHHHhc--cCc--------------------chh---HH
Confidence 78999999999884 5554221 111 111 17
Q ss_pred cccccccCCceEEEEEcccchhhc
Q 016989 233 DILSPLAGKKQLYTYETMDFWEQI 256 (379)
Q Consensus 233 d~l~~l~~~~~v~~~~~~~~w~~i 256 (379)
|+++.++++.++++|.++|+|.|+
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 899999888899999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=201.25 Aligned_cols=235 Identities=19% Similarity=0.249 Sum_probs=159.7
Q ss_pred eEEEEEecCCCCCCccCCCCC-CCCCCCceeCC-cchhHHHHHhcCc------EEEEcccc-hHHHHHHHHhhcccCCcc
Q 016989 9 VVAVIMVGGPTKGTRFRPLSL-NIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIP 79 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~-~~pK~llpi~g-~pli~~~i~~l~~------iiv~~~~~-~~~i~~~l~~~~~~~~~~ 79 (379)
|++|||||| .||||+|+|+ .+||+|+|++| +|||+|+++++.. |+|+++.. ...+++++.. ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 589999999 9999999996 79999999999 9999999999864 56665543 3346666653 1234
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccC-CCCeEEEEcCCeeec--CChHHHHHHHHh---cCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCCS--FPLPEMLDAHRN---YGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~-~~~~~lv~~gD~i~~--~dl~~~l~~~~~---~~~~~ti~~~~~~~~~~~~~g 153 (379)
+.++.++...||++++..+...+... ..+.+++++||+++. .++.++++.+.+ .++.+|+.+.+. ...+.||
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~--~~~t~yG 152 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT--RPETGYG 152 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec--CCCCCeE
Confidence 55666777899999999998887631 124799999999994 567777765543 566778777775 3458999
Q ss_pred EEEEeCCC-C---cEEEeeecCCCc--------ccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhc
Q 016989 154 ELVADPDT-N---ELLHYTEKPETF--------VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (379)
Q Consensus 154 ~v~~d~~~-~---~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (379)
++..+++. + +|.+|.|||+.. ...++|+|+|+|+++. ++.|.+..+.-..... .......
T Consensus 153 yI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~-------~~~~~~~ 225 (274)
T cd02509 153 YIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALE-------KALAAAG 225 (274)
T ss_pred EEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHH-------HHHHhcC
Confidence 99987422 2 899999999742 1347899999999765 5676654432210000 0000000
Q ss_pred ccccccccccccccccc----------ccCCceEEEEEcccchhhcCCccc
Q 016989 221 RNLTTDFVRLDQDILSP----------LAGKKQLYTYETMDFWEQIKTPGM 261 (379)
Q Consensus 221 ~~~~~~~~~l~~d~l~~----------l~~~~~v~~~~~~~~w~~i~t~~d 261 (379)
..++..+..+.++. |.+..++.+.+.+..|-|+|++.+
T Consensus 226 ---~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 226 ---TDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred ---CchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 00010001122221 344567888898889999999865
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=192.93 Aligned_cols=177 Identities=26% Similarity=0.496 Sum_probs=136.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc-----cCCc
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN-----ELRI 78 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~-----~~~~ 78 (379)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+ |+|++....+.+.+++....+ ..++
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v 78 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIV 78 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceE
Confidence 589999999 9999999999999999999999999999999985 666666666667778765321 1123
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHH--HHhcCCceEEEEEEeCCCC-------C
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDA--HRNYGGMGTILVIKVSAES-------A 149 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~--~~~~~~~~ti~~~~~~~~~-------~ 149 (379)
.+.+..+....|++++++.+.+.+.+ +|++++||++++.++.++++. +...++++++++....... +
T Consensus 79 ~~~~~~~~~~~Gta~~l~~~~~~i~~----dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (216)
T cd02507 79 DVITSDLCESAGDALRLRDIRGLIRS----DFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKT 154 (216)
T ss_pred EEEEccCCCCCccHHHHHHHhhcCCC----CEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccC
Confidence 34455556789999999999988854 499999999999999999965 4445566666655543222 5
Q ss_pred CceeEEEEeCCC--CcEEEeeecCCC------------------cccceeeeeEEEeCHhhH
Q 016989 150 SQFGELVADPDT--NELLHYTEKPET------------------FVSDLINCGVYVFTPDIF 191 (379)
Q Consensus 150 ~~~g~v~~d~~~--~~v~~~~ekp~~------------------~~~~~~~~Giy~~~~~~l 191 (379)
..++.+..|+++ .++..+.++++. ..+++.++|+|+|+++++
T Consensus 155 ~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 155 EEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 677888888755 567777776542 247899999999999864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=192.74 Aligned_cols=213 Identities=23% Similarity=0.394 Sum_probs=158.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++++++...+.+.+++.. +++ .++.+
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~~--~~~~~ 69 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PNV--EFVLQ 69 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CCc--EEEEC
Confidence 6999999 9999997 789999999999999999999976 555555545557777753 233 34445
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
....|++++++.+++.++. ..+.|++++||.++ +.++.++++.|.+.++++++.+.+. .++..|+.+..++ +++
T Consensus 70 ~~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~-~~~ 145 (229)
T cd02540 70 EEQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYGRIIRDG-NGK 145 (229)
T ss_pred CCCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCccEEEEcC-CCC
Confidence 5668999999999998863 13579999999976 6789999999987777777777665 3567888877763 689
Q ss_pred EEEeeecCCCcc----cceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 164 LLHYTEKPETFV----SDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 164 v~~~~ekp~~~~----~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
|..+.+||.... ..+.++|+|+|+++. ++.++.......+++ .+. .++++.+
T Consensus 146 v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~--------------------~~~---~d~~~~~ 202 (229)
T cd02540 146 VLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE--------------------YYL---TDIIALA 202 (229)
T ss_pred EEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCc--------------------EEH---HHHHHHH
Confidence 999999864322 368899999999764 566665432111111 111 6778777
Q ss_pred cC-CceEEEEEcccc--hhhcCCccc
Q 016989 239 AG-KKQLYTYETMDF--WEQIKTPGM 261 (379)
Q Consensus 239 ~~-~~~v~~~~~~~~--w~~i~t~~d 261 (379)
++ +.+|++|.++|+ |..+++|.+
T Consensus 203 ~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 203 VADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred HHCCCEEEEEEcCCcceEecCCChHh
Confidence 75 468999999876 567788764
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=192.35 Aligned_cols=177 Identities=29% Similarity=0.503 Sum_probs=138.7
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEccc-chHHHHHHHHhhc--ccCCccE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSIS--NELRIPV 80 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~-~~~~i~~~l~~~~--~~~~~~i 80 (379)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+ |+|++.. ....+++++.... ...+..+
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeE
Confidence 689999999 9999999999999999999999999999999986 6665554 3345777776532 1112334
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCC-----------CC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE-----------SA 149 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~-----------~~ 149 (379)
.+..+....|++++++.+.+.+.+ +|++++||.+++.++.++++.|++.++.+|+++++.... .+
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i~~----d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 154 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKIKK----DFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKA 154 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhcCC----CEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCC
Confidence 455567789999999999988743 499999999999999999999999999999998875421 12
Q ss_pred CceeEEEEeCCCCcEEEeeec-----------------CC-CcccceeeeeEEEeCHhhH
Q 016989 150 SQFGELVADPDTNELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDIF 191 (379)
Q Consensus 150 ~~~g~v~~d~~~~~v~~~~ek-----------------p~-~~~~~~~~~Giy~~~~~~l 191 (379)
..+.++..|+++++++.+... |+ .-.+++.++|+|+|+++++
T Consensus 155 ~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 155 DERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 346677888767889888652 11 1248899999999998864
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=188.87 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=155.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
++.+|||||| .++|| + +|+|+|++|+|||+|+++.+.+ |+|+++. +.+.+++.. ++.++.+
T Consensus 2 ~~~~iIlA~g--~S~R~-~-----~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARY--ASTRL-P-----GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVM 67 (245)
T ss_pred ceEEEEecCC--CCCCC-C-----CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 4789999999 99999 4 6999999999999999999975 6666553 336666643 3566656
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeC----CCCCCceeEEE
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVS----AESASQFGELV 156 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~----~~~~~~~g~v~ 156 (379)
..+....|++... .+...+.....+.+++++||+|+ ..++.++++.|..++++.++++.+.. ..++..++++
T Consensus 68 ~~~~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 145 (245)
T PRK05450 68 TSPDHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV- 145 (245)
T ss_pred CCCcCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-
Confidence 5555566776443 34444421112469999999977 56799999988776666666665542 1345667755
Q ss_pred EeCCCCcEEEeeecCCCc----------ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccc
Q 016989 157 ADPDTNELLHYTEKPETF----------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (379)
Q Consensus 157 ~d~~~~~v~~~~ekp~~~----------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
+++ +++|+.|.|||... .+.+.++|+|+|++++++.+.+....... ..+
T Consensus 146 ~d~-~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~--------------------~~~ 204 (245)
T PRK05450 146 LDA-DGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLE--------------------KIE 204 (245)
T ss_pred eCC-CCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccc--------------------cch
Confidence 663 78999999997321 34899999999999999888753211100 000
Q ss_pred cccccccccccccCCceEEEEEccc-chhhcCCccchhhcchHH
Q 016989 227 FVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 227 ~~~l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~~ 269 (379)
. .+.++.+.++.+++++..++ +|.++|+|+||.+|++.+
T Consensus 205 ~----~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 205 S----LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred h----HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 0 12233445667899999986 899999999999997543
|
|
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=199.56 Aligned_cols=240 Identities=17% Similarity=0.260 Sum_probs=158.7
Q ss_pred eEEEEEecCCCCCCccCCCCCC-CCCCCceeCC-cchhHHHHHhcCc-----EEEEcccch-HHHHHHHHhhcccCCccE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR-----IYLVGFYEE-REFALYVSSISNELRIPV 80 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~-~pK~llpi~g-~pli~~~i~~l~~-----iiv~~~~~~-~~i~~~l~~~~~~~~~~i 80 (379)
|.+|||||| .||||+|+|.. +||+|+|+.| +|||+|+++.+.. ++|+++... ..+.+.+.. ++.+.
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~----~~~~~ 74 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE----IGKLA 74 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH----cCCCc
Confidence 579999999 99999999996 8999999977 8999999999975 555555322 234455543 33332
Q ss_pred -EEecCCCCCChHHHHHHHHHhhcc--CCCCeEEEEcCCeeec--CChHHHHHHH---HhcCCceEEEEEEeCCCCCCce
Q 016989 81 -RYLREDKPHGSAGALYNFRDLIME--DNPSHIFLLNCDVCCS--FPLPEMLDAH---RNYGGMGTILVIKVSAESASQF 152 (379)
Q Consensus 81 -~~~~~~~~~g~~~al~~~~~~i~~--~~~~~~lv~~gD~i~~--~dl~~~l~~~---~~~~~~~ti~~~~~~~~~~~~~ 152 (379)
.++.++...||+.++..+..++.. +..+.+++++||+++. .+|.++++.+ .+.++.+|+...+. ...+.|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~--~p~t~Y 152 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPT--HPETGY 152 (468)
T ss_pred ceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCC--CCCCCc
Confidence 466778889999999887766632 1123599999999883 4588888865 34455566665543 345799
Q ss_pred eEEEEeC-----CCCcEEEeeecCCCcc--------cceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhh
Q 016989 153 GELVADP-----DTNELLHYTEKPETFV--------SDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQS 218 (379)
Q Consensus 153 g~v~~d~-----~~~~v~~~~ekp~~~~--------~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (379)
|++..++ +.++|..|.|||+... ..++|+|+|+|+++. ++.|.+..+.-... +. .++..
T Consensus 153 GyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~-----~~--~~~~~ 225 (468)
T TIGR01479 153 GYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEA-----CE--AAVEA 225 (468)
T ss_pred eEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHH-----HH--HHHHh
Confidence 9999873 1258999999996421 368999999999654 56666544321100 00 00000
Q ss_pred hccccccccccccccccc---------c-ccCCceEEEEEcccchhhcCCccchhhc
Q 016989 219 ATRNLTTDFVRLDQDILS---------P-LAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 219 ~~~~~~~~~~~l~~d~l~---------~-l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
.. .......+..+.++ . |.+..++.+.+.+..|.|+|+++++.+.
T Consensus 226 ~~--~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 226 SE--PDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred cc--CCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 00 00000011122222 2 3445679999998899999999998865
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=180.65 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=150.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+.+|||||| .++||. ||+|+|++|+|||+|+++.+.+ |+|+++. +.+.+++.. +++++.+
T Consensus 2 ~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (239)
T cd02517 2 VIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVM 67 (239)
T ss_pred EEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 579999999 999995 6999999999999999998864 5666553 346777653 3466655
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhc-CCceEEEEEEeCC-C---CCCceeEE
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSA-E---SASQFGEL 155 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~-~~~~ti~~~~~~~-~---~~~~~g~v 155 (379)
..+....|+++ +..+.+.+.. ..+.+++++||+++ ..++..+++.|... ++++++++.+.+. . ....|+ +
T Consensus 68 ~~~~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 144 (239)
T cd02517 68 TSPDHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVK-V 144 (239)
T ss_pred cCcccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCE-E
Confidence 54555678874 6666666642 12579999999976 67799999988765 6778888777531 1 223334 4
Q ss_pred EEeCCCCcEEEeeecCCC-------cccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccc
Q 016989 156 VADPDTNELLHYTEKPET-------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (379)
Q Consensus 156 ~~d~~~~~v~~~~ekp~~-------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (379)
..++ +++|..|.++|.. +...+.++|+|+|++++++.+..... .++ +++ +.
T Consensus 145 ~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~----~~~--~~~--------------~~- 202 (239)
T cd02517 145 VLDK-DGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPP----SPL--EQI--------------ES- 202 (239)
T ss_pred EECC-CCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCC----chh--hhh--------------hh-
Confidence 5553 6789988875421 13678999999999999988764311 111 000 00
Q ss_pred cccccccccccCCceEEEEEcccchhhcCCccchhhcch
Q 016989 229 RLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (379)
Q Consensus 229 ~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (379)
-+++..+.++.+++++..+++|.++|||++|.+|++
T Consensus 203 ---~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 203 ---LEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred ---HHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 112222334567999999899999999999998864
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=173.04 Aligned_cols=224 Identities=16% Similarity=0.269 Sum_probs=147.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEc-ccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~-~~~~~~i~~~l~~~~~~~~~~i 80 (379)
+.|+||||||| +|+||+| +.||||+.++|+|+|+|+|++|.+ +++++ .+..+.++.++.++. +..++
T Consensus 2 ~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~i 74 (239)
T COG1213 2 HPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKI 74 (239)
T ss_pred CceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEE
Confidence 56899999999 9999999 999999999999999999999987 44444 455556888887532 23445
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
.+.......+++.+|+.|.++++.. |++++||++++.. ++.+++ .++...++..+.....-..-..+..
T Consensus 75 v~N~~y~ktN~~~Sl~~akd~~~~~----fii~~sD~vye~~~~e~l~~----a~~~~li~d~~~~~~~~~ea~kv~~-- 144 (239)
T COG1213 75 VINSDYEKTNTGYSLLLAKDYMDGR----FILVMSDHVYEPSILERLLE----APGEGLIVDRRPRYVGVEEATKVKD-- 144 (239)
T ss_pred EeCCCcccCCceeEEeeehhhhcCc----EEEEeCCEeecHHHHHHHHh----CcCCcEEEeccccccccCceeEEEe--
Confidence 4554556667799999999999875 9999999999433 444444 3333333333321111112222333
Q ss_pred CCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc-
Q 016989 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL- 238 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l- 238 (379)
++|++..+.++-. ..+..++|++.|+++++..+.+........ ++ .++.+..
T Consensus 145 e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~---------------------~~----~~~~~~~~ 197 (239)
T COG1213 145 EGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSEY---------------------DY----REVEKEAG 197 (239)
T ss_pred cCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhhH---------------------HH----HHHHHHhC
Confidence 3789999888744 456689999999999887766543211100 00 1122111
Q ss_pred cCCceEEEEEcccchhhcCCccchhhcchHHHHhhh
Q 016989 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFR 274 (379)
Q Consensus 239 ~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~ 274 (379)
.....+.......+|.+++||+|+.+|.+.+...+.
T Consensus 198 ~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~~ 233 (239)
T COG1213 198 LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNIK 233 (239)
T ss_pred CceEEeeccccCceeEecCCHHHHHHHHHHHHHHHH
Confidence 111222222113579999999999999887776543
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=173.05 Aligned_cols=215 Identities=19% Similarity=0.232 Sum_probs=148.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.|||||+| .++|| | +|+|+|++|+|||+|+++.+.+ |+|+++. +.+.+++.. ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~-~-----~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRL-P-----GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCC-C-----CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 4789999999 88998 4 5999999999999999998865 6666653 346777753 456665
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCC-ceEEEEEEeCC--C--CCCceeE
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG-MGTILVIKVSA--E--SASQFGE 154 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~-~~ti~~~~~~~--~--~~~~~g~ 154 (379)
+..+....|++ .+..+.+.+. .+.|++++||+|+ +.++.++++.+...+. ++++++.+.+. . ++..++.
T Consensus 68 ~~~~~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 143 (238)
T PRK13368 68 MTSDDHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV 143 (238)
T ss_pred ecCccCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE
Confidence 55555556666 5666666653 2479999999987 7789999998876544 44445544321 1 2444444
Q ss_pred EEEeCCCCcEEEeeecCCC------cccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccc
Q 016989 155 LVADPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (379)
Q Consensus 155 v~~d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (379)
..++ +|++..+.++|.. ....+.++|+|+|++++|+.+....... .+.
T Consensus 144 -~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~-----------------------~~~- 197 (238)
T PRK13368 144 -VVDK-NGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETP-----------------------LEQ- 197 (238)
T ss_pred -EECC-CCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCCh-----------------------hhh-
Confidence 4442 6899999865421 1144789999999999999875421100 000
Q ss_pred ccc-ccccccccCCceEEEEEcccchhhcCCccchhhcch
Q 016989 229 RLD-QDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (379)
Q Consensus 229 ~l~-~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (379)
+. .+++..+..+.+++++..+++|.|||||+||..++.
T Consensus 198 -~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 198 -IESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred -hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 00 144533335667999998899999999999998864
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=167.14 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=156.1
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.+||||+| .++|| | +|+|+|++|+|||+|+++.+.. .+|++...+ .+.+++.. +++++.
T Consensus 46 ~~i~aIIpA~G--~SsR~-~-----~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~~e-~I~~~~~~----~~v~vi 112 (293)
T PLN02917 46 SRVVGIIPARF--ASSRF-E-----GKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDE-RIAECCRG----FGADVI 112 (293)
T ss_pred CcEEEEEecCC--CCCCC-C-----CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECChH-HHHHHHHH----cCCEEE
Confidence 45789999999 99999 4 5999999999999999999874 444444333 46666643 345554
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEE--EeCCCCCCceeEEE-
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI--KVSAESASQFGELV- 156 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~--~~~~~~~~~~g~v~- 156 (379)
...+....|++.+ ..+.+.++. ..+.+++++||.|+ ...+.++++.+.+. .+.++++. +...+++..||.+.
T Consensus 113 ~~~~~~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~v 189 (293)
T PLN02917 113 MTSESCRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKC 189 (293)
T ss_pred eCCcccCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEE
Confidence 4444556677765 567777753 23579999999999 56799999987654 33433322 22335788898875
Q ss_pred -EeCCCCcEEEeeec------C---CCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccc
Q 016989 157 -ADPDTNELLHYTEK------P---ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (379)
Q Consensus 157 -~d~~~~~v~~~~ek------p---~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
.+. +|++..|..+ . +.....+.++|+|.|+.+.|..|.+..+++.++++ |++
T Consensus 190 v~~~-~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~--yLt--------------- 251 (293)
T PLN02917 190 VVDN-QGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEE--DLE--------------- 251 (293)
T ss_pred EECC-CCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchh--ccH---------------
Confidence 563 6776644432 1 12234688999999999988888887777766666 443
Q ss_pred cccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 227 ~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
|+. .+..+.++.++..+.....++|++++.++.+++.
T Consensus 252 ------dl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 252 ------QLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred ------HHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 343 4455677888877656779999999999987764
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=157.29 Aligned_cols=241 Identities=16% Similarity=0.214 Sum_probs=160.3
Q ss_pred eEEEEEecCCCCCCccCCCCC-CCCCCCceeC-CcchhHHHHHhcCc------EEEEcccchH-HHHHHHHhhcccCCcc
Q 016989 9 VVAVIMVGGPTKGTRFRPLSL-NIPKPLFPLG-GQPMVHHPISACKR------IYLVGFYEER-EFALYVSSISNELRIP 79 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~-~~pK~llpi~-g~pli~~~i~~l~~------iiv~~~~~~~-~i~~~l~~~~~~~~~~ 79 (379)
|..|||||| .|||||||++ ..||++|++. +++|+..+++++.. ++|+++.... .+++.+...... ..
T Consensus 2 ~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~--~~ 77 (333)
T COG0836 2 MIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE--NA 77 (333)
T ss_pred ceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc--cc
Confidence 689999999 9999999985 7999999995 59999999999976 6777765443 344444432111 11
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCC-CeEEEEcCCeee-cC-ChHHHHHHH---HhcCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNP-SHIFLLNCDVCC-SF-PLPEMLDAH---RNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~-~~~lv~~gD~i~-~~-dl~~~l~~~---~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
-.++.++....|+.++..+.-.+..+.+ .-++|+++|++. +. .+.+.++.. .+++..+|+...+.. ..+.||
T Consensus 78 ~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~--PeTGYG 155 (333)
T COG0836 78 AGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR--PETGYG 155 (333)
T ss_pred cceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCC--CccCcc
Confidence 1155667888999999887666654333 369999999999 32 366666643 345666666666653 468999
Q ss_pred EEEEeCC-----CCcEEEeeecCCCc--------ccceeeeeEEEeCHh-hHHHhhccccccccchhhhhcchhhhhhhh
Q 016989 154 ELVADPD-----TNELLHYTEKPETF--------VSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSA 219 (379)
Q Consensus 154 ~v~~d~~-----~~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (379)
++...+. -.+|.+|.|||+.. ...++|+|+|+|+.+ +++.+++..++-..... +++...
T Consensus 156 YIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~-------~~~~~~ 228 (333)
T COG0836 156 YIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAE-------KAFEAA 228 (333)
T ss_pred eeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHH-------HHHhcc
Confidence 9988542 23799999999732 246899999999976 47888876654311111 111111
Q ss_pred cccccccccccccccc--------c--cccCCceEEEEEcccchhhcCCccchhhc
Q 016989 220 TRNLTTDFVRLDQDIL--------S--PLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 220 ~~~~~~~~~~l~~d~l--------~--~l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
. ..++..|..+.+ . -|.+..++.+.+.+-.|-|+|++..+++.
T Consensus 229 ~---d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 229 V---DENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred c---ccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHH
Confidence 0 112211211111 1 14456788999988899999999766653
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=169.82 Aligned_cols=243 Identities=16% Similarity=0.241 Sum_probs=155.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCC-CCCCCceeCC-cchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~-~pK~llpi~g-~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
+.|.+|||||| .||||+|+++. +||+|+|+.| +|||+++++.+.. ++|++......+++.+..... .
T Consensus 4 ~~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~ 78 (478)
T PRK15460 4 SKLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---L 78 (478)
T ss_pred CceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---c
Confidence 34799999999 99999999997 7999999965 6999999999865 555554444456656643210 1
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCC---CeEEEEcCCeee-cC-ChHHHHHHH---HhcCCceEEEEEEeCCCCCC
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNP---SHIFLLNCDVCC-SF-PLPEMLDAH---RNYGGMGTILVIKVSAESAS 150 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~---~~~lv~~gD~i~-~~-dl~~~l~~~---~~~~~~~ti~~~~~~~~~~~ 150 (379)
...++.++...+|+.++..|...+....+ +.++++++|+++ +. .|.+.++.. .+.+..+|+...+.. ..+
T Consensus 79 ~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~--PeT 156 (478)
T PRK15460 79 TENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL--PET 156 (478)
T ss_pred cccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC--CCC
Confidence 22455677888999998877666643212 368899999998 32 355555543 223555666666653 458
Q ss_pred ceeEEEEeCCC--------CcEEEeeecCCCc--------ccceeeeeEEEeCHh-hHHHhhccccccccchhhhhcchh
Q 016989 151 QFGELVADPDT--------NELLHYTEKPETF--------VSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSF 213 (379)
Q Consensus 151 ~~g~v~~d~~~--------~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~ 213 (379)
.||++..++.- .+|.+|.|||+.. ...++|+|+|+|+.+ +++.|++..+.-.....
T Consensus 157 gyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~------- 229 (478)
T PRK15460 157 GYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACE------- 229 (478)
T ss_pred CCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHH-------
Confidence 89999876321 2699999999742 245889999999976 46777765542210000
Q ss_pred hhhhhhcccccccccccccccccc----------ccCCceEEEEEcccchhhcCCccchhhc
Q 016989 214 EALQSATRNLTTDFVRLDQDILSP----------LAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~d~l~~----------l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
.++.... ....+..+..+.++. |.+..++.+.+.+..|-|+|++.++.+.
T Consensus 230 ~~~~~~~--~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 230 KAMSAVD--PDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHhcc--CcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 0000000 000010000111111 3344568888888889999999887654
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=135.93 Aligned_cols=165 Identities=19% Similarity=0.345 Sum_probs=118.1
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|.||||||| .|||+.|+|...||+|+.|.|+|||+++|+.|.+ |+|++.+..+ -.+|+. +++++.+.+.
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE-~FeYLk---dKy~vtLvyN 74 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKE-QFEYLK---DKYDVTLVYN 74 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHH-HHHHHH---HhcCeEEEeC
Confidence 579999999 9999999999999999999999999999999987 5444444333 345665 4567888887
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
+......+..+++.|++++.+ .-++.+|..+ .+.+...+..+. --.++.+. +....|. +..+ ++++
T Consensus 75 ~kY~~yNn~ySlyla~d~l~n-----tYiidsDnyl---~kNif~~~~~~S--~Yfav~~~--~~tnEw~-l~~~-~~~k 140 (231)
T COG4750 75 PKYREYNNIYSLYLARDFLNN-----TYIIDSDNYL---TKNIFLTKESHS--KYFAVYRS--GKTNEWL-LIYN-SDGK 140 (231)
T ss_pred chHHhhhhHHHHHHHHHHhcc-----cEEeccchHh---hhhhhhcCcccc--eEEEEEec--CCCceeE-EEEc-CCCc
Confidence 777778899999999999975 6788999988 333333332221 11222222 2334444 3444 3789
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhc
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQG 196 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~ 196 (379)
|+++.-... .++.-+|+-.|+....+.+.+
T Consensus 141 i~~v~Igg~---~~~imsG~sff~~~~~~ki~~ 170 (231)
T COG4750 141 ITRVDIGGL---NGYIMSGISFFDAQFSNKIKK 170 (231)
T ss_pred EEEEEecCc---ccceEeeeeeecchhHHHHHH
Confidence 998876643 467888999998766555443
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=135.17 Aligned_cols=212 Identities=15% Similarity=0.116 Sum_probs=138.9
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
+||+|+| .|+|| | +|+|++++|+|||.|+++.+.. |+|++.. +.+.+++.. +++++.....
T Consensus 2 ~iIpA~g--~s~R~-~-----~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~~ 67 (238)
T TIGR00466 2 VIIPARL--ASSRL-P-----GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQK----FGIEVCMTSK 67 (238)
T ss_pred EEEecCC--CCCCC-C-----CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH----cCCEEEEeCC
Confidence 7999999 99999 4 7999999999999999998864 6666653 225555542 4455443333
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCC---CCceeEEEEeCC
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAES---ASQFGELVADPD 160 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~---~~~~g~v~~d~~ 160 (379)
....|+ +.+..+.+.+.....+.++++.||.|+ +..+.++++.+.+.+.++++++.+..... .++...+..+ +
T Consensus 68 ~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~-~ 145 (238)
T TIGR00466 68 HHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLD-S 145 (238)
T ss_pred CCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeC-C
Confidence 334443 344444444421113569999999998 56789999987655566777777653211 1123333445 3
Q ss_pred CCcEEEeeecCC-----------Ccc--cceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccc
Q 016989 161 TNELLHYTEKPE-----------TFV--SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (379)
Q Consensus 161 ~~~v~~~~ekp~-----------~~~--~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
+|+...|.+.+- .+. ..+...|+|.|++++|+.+....++.....+
T Consensus 146 ~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e--------------------- 204 (238)
T TIGR00466 146 QGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIE--------------------- 204 (238)
T ss_pred CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccc---------------------
Confidence 677766665411 111 1467899999999999988876544321110
Q ss_pred ccccccccccccCCceEEEEEcccc-hhhcCCccch
Q 016989 228 VRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMS 262 (379)
Q Consensus 228 ~~l~~d~l~~l~~~~~v~~~~~~~~-w~~i~t~~d~ 262 (379)
.-+-++.|..+.+|.....+.. -..+|||+|+
T Consensus 205 ---~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 205 ---KLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ---hhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1456677778889998887655 4599999986
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=128.01 Aligned_cols=200 Identities=18% Similarity=0.172 Sum_probs=130.1
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+.+|||||| .|+|| + +|+|++++|+|||+|+++.+.+ |+|++. . +.+.+++.. ++..+.+
T Consensus 2 ~~~iIlA~G--~s~R~-~-----~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~-~-~~i~~~~~~----~~~~~~~ 67 (223)
T cd02513 2 ILAIIPARG--GSKGI-P-----GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD-D-EEIAEVARK----YGAEVPF 67 (223)
T ss_pred eEEEEecCC--CCCCC-C-----CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC-c-HHHHHHHHH----hCCCcee
Confidence 679999999 99999 3 5999999999999999999964 555553 2 235554432 2332223
Q ss_pred ecC----CCCCChHHHHHHHHHhhccC--CCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeE
Q 016989 83 LRE----DKPHGSAGALYNFRDLIMED--NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (379)
Q Consensus 83 ~~~----~~~~g~~~al~~~~~~i~~~--~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 154 (379)
... ....|+.++++.+++.+... ..+.++++.||.|+ ..++.++++.+...+++.++.+.+.. ...|..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~~ 144 (223)
T cd02513 68 LRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH---RFPWRA 144 (223)
T ss_pred eCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC---cCcHHh
Confidence 321 23457889999998877531 13579999999998 57799999998877777777766652 223332
Q ss_pred EEEeCCCCcEEEeeec-----CCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccc
Q 016989 155 LVADPDTNELLHYTEK-----PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (379)
Q Consensus 155 v~~d~~~~~v~~~~ek-----p~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
...+.++..+..+.++ .+.+.....++|+|+++++.+......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~-------------------------------- 192 (223)
T cd02513 145 LGLDDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNSF-------------------------------- 192 (223)
T ss_pred eeeccCCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCCc--------------------------------
Confidence 2222111122222221 123345567889999999876442210
Q ss_pred ccccccccccCCceEEEEEccc-chhhcCCccchhhcch
Q 016989 230 LDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSG 267 (379)
Q Consensus 230 l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~ 267 (379)
-+.++..+..+. .-.+|++++|+..|..
T Consensus 193 ----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 193 ----------FGGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred ----------cCCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 034666666544 4689999999877643
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-14 Score=124.12 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=130.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIP 79 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~ 79 (379)
+.+.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.. |+|+++... +.+...+.. .. ..
T Consensus 2 ~~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~ 72 (227)
T PRK00155 2 MMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PK 72 (227)
T ss_pred CceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-Cc
Confidence 45789999999 9999964 569999999999999999999953 666665443 223222211 11 12
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+..... ..+.+++++.+.+.+.+ .+.+++++||.|+ ...++++++.+.+.+ .++++.+.. + .+.. .
T Consensus 73 ~~~~~~--~~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~--~--~~~~--v 140 (227)
T PRK00155 73 VTVVAG--GAERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVK--D--TIKR--S 140 (227)
T ss_pred eEEeCC--cchHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecc--c--cEEE--E
Confidence 333322 23578999999888743 2579999999998 567899999876643 434444432 1 1222 2
Q ss_pred eCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
+ +++.+..+.+.. .-...-+.|.|+.+.+..+...... + ++ |+|+ ....
T Consensus 141 ~-~~g~~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~--~-~~--~~~d---------------------~~~~ 189 (227)
T PRK00155 141 D-DGGGIVDTPDRS----GLWAAQTPQGFRIELLREALARALA--E-GK--TITD---------------------DASA 189 (227)
T ss_pred c-CCCceeecCChH----HheeeeCCccchHHHHHHHHHHHHh--c-CC--CcCc---------------------HHHH
Confidence 3 256666553321 1122234889998776544322110 0 11 2222 1111
Q ss_pred cc-CCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 238 LA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 238 l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+. .+.++..+..+..+.+|+|++|+..|..++.
T Consensus 190 ~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 190 VERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred HHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 11 2346777776667889999999998876654
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=121.57 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=135.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
|||||+| .++|| | .|.+++++|+|||.|+++.+.+ |+|.+.. + .+.+... .+|.++.+.+
T Consensus 2 aiIpArG--~Skr~-~-----~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~-~-~i~~~a~----~~g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARG--GSKRI-P-----RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD-E-EIAEVAK----SYGASVPFLR 67 (222)
T ss_pred EEEccCC--CCCCC-C-----CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC-H-HHHHHHH----HcCCEeEEeC
Confidence 7999999 88888 5 6999999999999999999976 5555543 2 2555443 3455554432
Q ss_pred ----CCCCCChHHHHHHHHHhhcc-CCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 85 ----EDKPHGSAGALYNFRDLIME-DNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 85 ----~~~~~g~~~al~~~~~~i~~-~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
.....|+.++++.+++.++. ...+.++++.||.|+ ..+++++++.+.+.+++..+.+.+.. .+..+.. ..
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~--~~~~~~~-~~ 144 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA--FPIQRAF-KL 144 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC--CChHHhe-EE
Confidence 13456888999999888743 224679999999999 67899999998877788877777652 2222322 33
Q ss_pred eCCCCcEEEeeec------CCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccc
Q 016989 158 DPDTNELLHYTEK------PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (379)
Q Consensus 158 d~~~~~v~~~~ek------p~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (379)
+ ++|++..+... .+.+.....++++|+++++.+..-...
T Consensus 145 ~-~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~~~---------------------------------- 189 (222)
T TIGR03584 145 K-ENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESGPI---------------------------------- 189 (222)
T ss_pred C-CCCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcCCc----------------------------------
Confidence 3 25555544421 123344567999999999877532210
Q ss_pred ccccccccCCceEEEEEccc-chhhcCCccchhhcchH
Q 016989 232 QDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 232 ~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~ 268 (379)
-+.++..|+.+. ...||++++|+..|..+
T Consensus 190 --------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 190 --------FSPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred --------cCCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 024566676654 47899999999887543
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=118.92 Aligned_cols=116 Identities=26% Similarity=0.380 Sum_probs=88.1
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
+|||||| .|+||+. ||+|+|++|+|||+|+++.+.+ |+|+++.. .+..++.. .++++....
T Consensus 1 ~vILa~G--~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~--~~~~~~~~----~~~~~v~~~- 66 (160)
T PF12804_consen 1 AVILAAG--KSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE--EIYEYLER----YGIKVVVDP- 66 (160)
T ss_dssp EEEEESS--SCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH--HHHHHHTT----TTSEEEE-S-
T ss_pred CEEECCc--CcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecChH--HHHHHHhc----cCceEEEec-
Confidence 7999999 9999986 9999999999999999999987 77777762 24444432 344443332
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
....|.+.+++.+...+.. .+.|++++||+++ ...++.+++.+.+.+++++++..
T Consensus 67 ~~~~G~~~sl~~a~~~~~~--~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 67 EPGQGPLASLLAALSQLPS--SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp TSSCSHHHHHHHHHHTSTT--SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cccCChHHHHHHHHHhccc--CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 2358999999999998742 2579999999987 56689999988776666544433
|
... |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=122.24 Aligned_cols=207 Identities=19% Similarity=0.255 Sum_probs=127.8
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+.. ++|++..........+... .....+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~--~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKY--GLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhc--ccCCCeEEE
Confidence 58999999 9999987 479999999999999999999964 5665554332222222111 112234444
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
... .+...+++.+++.++....+.++++.||.|+ ...++.+++.+.+.+ ..+...+.. + +....+ ++
T Consensus 75 ~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~--~----~~~~~~-~~ 143 (218)
T cd02516 75 EGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVT--D----TIKRVD-DD 143 (218)
T ss_pred CCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEecc--c----cEEEec-CC
Confidence 322 3567899999988742123579999999998 566899999876544 333333321 1 122344 36
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC-
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG- 240 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~- 240 (379)
|.+..+.+.. .-....++ ++|+.+.+..+......+ +. |+| |....+.+
T Consensus 144 g~~~~~~~r~---~~~~~~~P-~~f~~~~~~~~~~~~~~~--~~---~~t---------------------d~~~~~~~~ 193 (218)
T cd02516 144 GVVVETLDRE---KLWAAQTP-QAFRLDLLLKAHRQASEE--GE---EFT---------------------DDASLVEAA 193 (218)
T ss_pred CceeecCChH---HhhhhcCC-CcccHHHHHHHHHHHHhc--CC---CcC---------------------cHHHHHHHc
Confidence 7888777642 23345666 899988765554322111 11 222 22222221
Q ss_pred CceEEEEEcccchhhcCCccchhh
Q 016989 241 KKQLYTYETMDFWEQIKTPGMSLK 264 (379)
Q Consensus 241 ~~~v~~~~~~~~w~~i~t~~d~~~ 264 (379)
+.++..+..+..-.+|+||+||..
T Consensus 194 ~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 194 GGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CCCeEEEecCcccccCCCHHHHhh
Confidence 246666665555569999999854
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=129.03 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=130.0
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
|+++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+.. |+|+.+.......+.+. ..+..
T Consensus 3 mm~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~---~~~~~- 73 (378)
T PRK09382 3 MSDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL---PEIKF- 73 (378)
T ss_pred CCcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc---ccCCe-
Confidence 456899999999 9999954 689999999999999999999975 56665543332222221 11111
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+.++. ...+..++++.+++.++. +.++++.||.|+ ...++.+++...+. ++++.+.+.. ++..|+...+
T Consensus 74 v~~v~--gG~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~--Dtik~~~~tl 144 (378)
T PRK09382 74 VTLVT--GGATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVA--DTLKRANETV 144 (378)
T ss_pred EEEeC--CCchHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEec--cCcEEeeeEc
Confidence 33332 234578899999988854 479999999998 45578888866543 4667777763 5555654444
Q ss_pred eCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
+ ...+..+ ++|+.+.... +++.... ++ ++ +|..+.
T Consensus 145 d--R~~l~~~-QTPQ~f~~~~-----------l~~a~~~--------~~-------------------~~----TDd~sl 179 (378)
T PRK09382 145 D--REGLKLI-QTPQLSRTKT-----------LKAAADG--------RG-------------------DF----TDDSSA 179 (378)
T ss_pred C--cccEEEE-ECCCCCCHHH-----------HHHHHhC--------CC-------------------Cc----ccHHHH
Confidence 3 2344333 6665432211 1111110 00 11 233333
Q ss_pred cc-CCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 238 LA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 238 l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+. .+.+|..++.+..|..+.+|+|+..|..++.
T Consensus 180 ~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 180 AEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred HHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 32 3568999988889999999999999976653
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=122.11 Aligned_cols=205 Identities=17% Similarity=0.202 Sum_probs=128.8
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccEEE
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVRY 82 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i~~ 82 (379)
.||||||| .|+||+. ..||+|++++|+|||+|+++.+.. ++|++.... ..+..++.. . ..+.+
T Consensus 1 ~aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~ 70 (217)
T TIGR00453 1 SAVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKI 70 (217)
T ss_pred CEEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEE
Confidence 37999999 9999986 579999999999999999998874 566655432 334433321 1 12233
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
+... .+..++++.+++.++ ..+.+++++||.|+ ...+..+++.+.+. +.++++.+. ..+....++
T Consensus 71 ~~~~--~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~------~~~v~~~~~- 137 (217)
T TIGR00453 71 VAGG--DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV------ADTLKRVEA- 137 (217)
T ss_pred eCCC--chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec------cceEEEEcC-
Confidence 3222 246788999888772 23579999999998 56689999977654 344444443 223344453
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc-
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA- 239 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~- 239 (379)
+|.+..+.++.+ -....+ .|.|+...+..+...... + ++ |+ .|....+.
T Consensus 138 ~g~~~~~~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~--~-~~--~~---------------------~d~~~~~~~ 187 (217)
T TIGR00453 138 DGFIVETVDREG---LWAAQT-PQAFRTELLKKALARAKE--E-GF--EI---------------------TDDASAVEK 187 (217)
T ss_pred CCceeecCChHH---eEEEeC-CCcccHHHHHHHHHHHHh--c-CC--CC---------------------CcHHHHHHH
Confidence 567777776422 222334 689998776544321110 0 11 11 22222221
Q ss_pred CCceEEEEEcccchhhcCCccchhhcch
Q 016989 240 GKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (379)
Q Consensus 240 ~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (379)
.+.++..+..+..+.+|+||+|+..+.+
T Consensus 188 ~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 188 LGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred cCCCeEEEecCccccccCCHHHHHHHHH
Confidence 2457777777666789999999987754
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-13 Score=114.04 Aligned_cols=224 Identities=15% Similarity=0.174 Sum_probs=157.6
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.+||+|.= .+|||.. |||-.|+|+|||.|+.+++.+ ++|.+.. +.+.+.... +|.++.
T Consensus 2 ~~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~----~G~~av 67 (247)
T COG1212 2 MKFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQA----FGGEAV 67 (247)
T ss_pred CceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHH----hCCEEE
Confidence 45788999987 7888866 999999999999999999985 6666553 336666653 577887
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCC---CCCceeEEE
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAE---SASQFGELV 156 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~---~~~~~g~v~ 156 (379)
....+...||- .+..+.+.+.-...+.++=+.||.++ +..+..+++.....++++..++.+.... ..++--.++
T Consensus 68 mT~~~h~SGTd-R~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV 146 (247)
T COG1212 68 MTSKDHQSGTD-RLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVV 146 (247)
T ss_pred ecCCCCCCccH-HHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEE
Confidence 77777788884 66666666643323567778899999 5668888888777777765555554321 122333344
Q ss_pred EeCCCCcEEEeeecCCCc-------ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccc
Q 016989 157 ADPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (379)
Q Consensus 157 ~d~~~~~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
.| .+|+.+.|...|-.. ..-+.-.|+|.|++.+++.|....++.....+
T Consensus 147 ~d-~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E----------------------- 202 (247)
T COG1212 147 LD-KEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIE----------------------- 202 (247)
T ss_pred Ec-CCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHH-----------------------
Confidence 55 368999998865311 14466899999999999988876654321100
Q ss_pred ccccccccccCCceEEEEEcccch-hhcCCccchhhcchHHH
Q 016989 230 LDQDILSPLAGKKQLYTYETMDFW-EQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 230 l~~d~l~~l~~~~~v~~~~~~~~w-~~i~t~~d~~~a~~~~l 270 (379)
..+-|+.|..+.+|.+...+..- ..+|||+|+.++.+++.
T Consensus 203 -~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 203 -SLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred -HHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 02345556678899998887655 89999999999876654
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=119.80 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=88.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|.||||||| +|+||++ .||+|+|++|+|||+|+++.+.. ++|+++...+.++.|+... ... +.
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~--~~ 68 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKD--YK 68 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcE--EE
Confidence 689999999 9999976 69999999999999999999874 6666665555577777641 111 22
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEE
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
.....|.+.++..+++.+... +++++++||.++ ...+..+++.+...+.....++.
T Consensus 69 -~~~g~G~~~~l~~al~~~~~~--~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYFS--EPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccCC--CCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 245568888999888765322 469999999998 66789999987665554433333
|
At this time this gene appears to be present only in Archea |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=117.80 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=79.1
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
+|||||| .|+||++ ||+|+|++|+|||+|+++.+.+ ++|++....+.+...+. ..+++.+... .
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~~v~~v~~-~ 70 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHSNITLVHN-P 70 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCCCeEEEEC-c
Confidence 7999999 9999986 9999999999999999988764 55555544333322221 2234433222 2
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCce
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ 137 (379)
....|++++++.+++... ..+.+++++||+++ ...++.+++.+...+.++
T Consensus 71 ~~~~g~~~si~~~l~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 71 QYAEGQSSSIKLGLELPV--QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred ChhcCHHHHHHHHhcCCC--CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 234688999999887211 13579999999987 456888888776554433
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=120.15 Aligned_cols=213 Identities=12% Similarity=0.136 Sum_probs=127.9
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i 80 (379)
++.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.. ++|++.... ..+.+++..+... ...+
T Consensus 2 ~~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~ 75 (230)
T PRK13385 2 NYELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRV 75 (230)
T ss_pred ceEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCce
Confidence 3689999999 9999975 579999999999999999999853 666655433 2233444332110 0123
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEe
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d 158 (379)
.++. ...+..++++.+++.++. .+.++++.||.|+ ...++++++.+.+.+ ..+++.+.. + .....+
T Consensus 76 ~~v~--~g~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~--~~~~~~~~~-----d-ti~~~~ 143 (230)
T PRK13385 76 EVVK--GGTERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYG--AAICAVEVK-----D-TVKRVK 143 (230)
T ss_pred EEcC--CCchHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCC--cEEEEEecc-----c-eEEEEc
Confidence 3332 223456899999888753 2468999999999 556899999876654 334444431 1 122222
Q ss_pred CCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 159 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
++.+....++ ...+.--+.|.|+.+.+...-+... .+.+ |.|+ +..-..
T Consensus 144 --~~~~~~~i~r----~~~~~~qtpq~f~~~~l~~~~~~~~---~~~~--~~td--------------------~~~~~~ 192 (230)
T PRK13385 144 --DKQVIETVDR----NELWQGQTPQAFELKILQKAHRLAS---EQQF--LGTD--------------------EASLVE 192 (230)
T ss_pred --CCeeEeccCH----HHHhhhcCCceeeHHHHHHHHHHHH---hcCC--CcCc--------------------HHHHHH
Confidence 3444333332 1222334578888665433322110 0011 1121 111112
Q ss_pred cCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 239 ~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
..+.+|..++-+.....|+||+|+..|..++
T Consensus 193 ~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l 223 (230)
T PRK13385 193 RSPHPVKLVQGSYYNIKLTTPEDMPLAKAIL 223 (230)
T ss_pred HcCCCEEEEECCcccCcCCCHHHHHHHHHHH
Confidence 2346788887777788999999999887655
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=114.81 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=83.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. ++|++......+.+++. .+++.+ ..
T Consensus 1 ~~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~----~~~~~~-~~ 68 (186)
T cd04182 1 IAAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALA----GLPVVV-VI 68 (186)
T ss_pred CeEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc----CCCeEE-Ee
Confidence 468999999 9999988 9999999999999999999865 66666654433433332 223332 22
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG 135 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~ 135 (379)
.+....|++.+++.+++.+.. ..+.+++++||+++ ...++.+++.+...++
T Consensus 69 ~~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 69 NPDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred CCChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 233446999999999988763 23579999999988 5568888887654333
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-13 Score=117.57 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred ccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhcC-------Ccc---ccCCCCCCCeEEecCeEECCC
Q 016989 232 QDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS-------PNL---LASGDGTKNATIIGDVYVHPS 301 (379)
Q Consensus 232 ~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~-------~~~---~~~~~~~~~~~i~~~~~i~~~ 301 (379)
+|.++.|.+.. ++..+|||.|+ ++|+++++.++..+.... +.. .......+++.+.+++.||++
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~ 104 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN 104 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence 68888887654 78888999999 999999988886543100 011 011123466666677777777
Q ss_pred cEECCCCC--------CCcEE------e-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECC
Q 016989 302 AKIHPTAK--------ENAVV------T-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLP 365 (379)
Q Consensus 302 ~~i~~~~~--------~~~~i------~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~ 365 (379)
+.|++++. ++|.| . +++||++|.||.++.|.+. .....-..++|+++|.||.++.| .+++|++
T Consensus 105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~-~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~ 183 (231)
T TIGR03532 105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGV-IEPPSAKPVVIEDNVLIGANAVILEGVRVGK 183 (231)
T ss_pred CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccc-cccccCCCeEECCCcEECCCCEEcCCCEECC
Confidence 77766554 22233 2 4444444444444444320 00000012666777777766666 3666666
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.|+.++
T Consensus 184 ~~~Igags 191 (231)
T TIGR03532 184 GAVVAAGA 191 (231)
T ss_pred CCEECCCC
Confidence 66666544
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=110.62 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhh-cccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSI-SNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~-~~~~~~~i~~~ 83 (379)
.+|||||| .|+||+. +|.|++++|+|||+|+++.+.+ ++|+++...+.+. .+... ....++.+...
T Consensus 2 ~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (190)
T TIGR03202 2 VAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLADERIMLVCC 73 (190)
T ss_pred eEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhcCCCeEEEEC
Confidence 58999999 9999987 8999999999999999976543 5665544322111 11110 11123333332
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHh
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN 132 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~ 132 (379)
.+...|.+.+++.+++.+.....+.+++++||+|+ ...+..+++....
T Consensus 74 -~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 74 -RDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred -CChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 33345888999999987743234689999999999 4457788776543
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=109.62 Aligned_cols=105 Identities=21% Similarity=0.375 Sum_probs=73.9
Q ss_pred CCCCCCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCC-cchhHHHHHhcCc----EEEEcccchHHHHHHHHhhccc
Q 016989 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNE 75 (379)
Q Consensus 1 m~~~~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g-~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~ 75 (379)
|...|.+++.+|||||| +++||+. +|+|++++| +|+|+|+++.+.. |+|++.. .. + .
T Consensus 1 ~~~~~~~~i~~vILAgG--~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~~~~vvvv~~~-~~-~----~----- 62 (196)
T PRK00560 1 MKNPMIDNIPCVILAGG--KSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKLFKKVYISTKD-KK-F----E----- 62 (196)
T ss_pred CCCccccCceEEEECCc--ccccCCC-----CceEEEeCCCCcHHHHHHHHHHHhCCEEEEEECc-hh-c----c-----
Confidence 67778888999999999 9999976 999999999 9999999999975 6666553 21 1 0
Q ss_pred CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCC-hHHH
Q 016989 76 LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEM 126 (379)
Q Consensus 76 ~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~d-l~~~ 126 (379)
++..+.........|...++..++...+. +.+++++||+|+ +.+ ++.+
T Consensus 63 ~~~~~v~d~~~~~~gpl~gi~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 FNAPFLLEKESDLFSPLFGIINAFLTLQT---PEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cCCcEEecCCCCCCCcHHHHHHHHHhcCC---CeEEEEecCcCcCCHHHHHHH
Confidence 11222111122345666677666554432 479999999998 433 4555
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=104.15 Aligned_cols=105 Identities=24% Similarity=0.409 Sum_probs=83.1
Q ss_pred eEEEEEecCCCCCCccC-CCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFR-PLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~-~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|.+||+||| +|+||. + -|||++++|||||+|+++.+.+ |++....+...++.|+.. .++++ +
T Consensus 1 m~~iiMAGG--rGtRmg~~-----EKPlleV~GkpLI~~v~~al~~~~d~i~v~isp~tp~t~~~~~~----~gv~v--i 67 (177)
T COG2266 1 MMAIIMAGG--RGTRMGRP-----EKPLLEVCGKPLIDRVLEALRKIVDEIIVAISPHTPKTKEYLES----VGVKV--I 67 (177)
T ss_pred CceEEecCC--cccccCCC-----cCcchhhCCccHHHHHHHHHHhhcCcEEEEeCCCCHhHHHHHHh----cCceE--E
Confidence 579999999 999998 5 8999999999999999999987 666666555558888864 23444 3
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHH
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~ 131 (379)
..+ ..|-...+..+.+.+.. ++|++++|.++ +..+..+++.+.
T Consensus 68 ~tp-G~GYv~Dl~~al~~l~~----P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 ETP-GEGYVEDLRFALESLGT----PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EcC-CCChHHHHHHHHHhcCC----ceEEEecccccCCHHHHHHHHHHHh
Confidence 323 35788899999998865 49999999999 455777777654
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-12 Score=109.20 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=78.0
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. |+|++...... . ...++.+.. .
T Consensus 1 ~~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~iivv~~~~~~~----~----~~~~~~~v~-~ 64 (181)
T cd02503 1 ITGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPLVDEVVISANRDQER----Y----ALLGVPVIP-D 64 (181)
T ss_pred CcEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhhcCEEEEECCCChHH----H----hhcCCcEee-C
Confidence 468999999 9999987 9999999999999999999975 77776654432 1 112333322 2
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHH
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~ 130 (379)
.....|...+++.+++.++. +.+++++||+++ ...+..+++.+
T Consensus 65 ~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 65 EPPGKGPLAGILAALRAAPA---DWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCCHHHHHHHHHhcCC---CeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 23457899999999988753 479999999998 45578777765
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=107.43 Aligned_cols=109 Identities=25% Similarity=0.412 Sum_probs=80.5
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
|++.+.+|||||| .|+||+. +|+|++++|+|||+|+++.+.. ++|+++..+. ...... ..+
T Consensus 4 ~~~~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~ivvv~~~~~~-~~~~~~-------~~~ 68 (200)
T PRK02726 4 VKNNLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAACADEVYIITPWPER-YQSLLP-------PGC 68 (200)
T ss_pred cCCCceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHhhCCEEEEECCCHHH-HHhhcc-------CCC
Confidence 4456899999999 9999976 8999999999999999999975 6666654322 222111 123
Q ss_pred EEec-CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHH
Q 016989 81 RYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 81 ~~~~-~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~ 131 (379)
.++. .....|...+++.+++.++. +.+++++||.++ ...+..+++.+.
T Consensus 69 ~~i~~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 69 HWLREPPPSQGPLVAFAQGLPQIKT---EWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred eEecCCCCCCChHHHHHHHHHhCCC---CcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 3333 23346899999999998764 479999999999 455788887653
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=105.79 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=78.4
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
+.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. |+|++...... +.. ...++.+....
T Consensus 1 ~~~iILAgG--~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~~~~~ivv~~~~~~~~---~~~---~~~~~~~i~~~ 68 (186)
T TIGR02665 1 ISGVILAGG--RARRMGG----RDKGLVELGGKPLIEHVLARLRPQVSDLAISANRNPER---YAQ---AGFGLPVVPDA 68 (186)
T ss_pred CeEEEEcCC--ccccCCC----CCCceeEECCEEHHHHHHHHHHhhCCEEEEEcCCCHHH---Hhh---ccCCCcEEecC
Confidence 368999999 9999974 49999999999999999999875 66666543321 111 11233433222
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHh
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN 132 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~ 132 (379)
.....|+.++++.+++.++. +.+++++||.++ ...+..+++.+..
T Consensus 69 ~~~~~g~~~si~~al~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 69 LADFPGPLAGILAGLRWAGT---DWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCCCCCHHHHHHHHHhcCC---CeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 23457999999999987743 479999999988 4447777776543
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=106.86 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=77.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+.+.+|||||| .|+||+. .||+|+|++|+|||+|+++.+.. |+|++....+. +. ..++.+..
T Consensus 2 ~~~~~vILA~G--~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~~~~~~i~vv~~~~~~~----~~----~~~~~~v~ 67 (193)
T PRK00317 2 PPITGVILAGG--RSRRMGG----VDKGLQELNGKPLIQHVIERLAPQVDEIVINANRNLAR----YA----AFGLPVIP 67 (193)
T ss_pred CCceEEEEcCC--CcccCCC----CCCceeEECCEEHHHHHHHHHhhhCCEEEEECCCChHH----HH----hcCCcEEe
Confidence 45899999999 9999953 49999999999999999999965 66665543221 11 12333322
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHH
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~ 131 (379)
.......|...+++.+++..+. +.+++++||.++ ...+..+++.+.
T Consensus 68 ~~~~~~~g~~~~i~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 68 DSLADFPGPLAGILAGLKQART---EWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred CCCCCCCCCHHHHHHHHHhcCC---CeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 1112236888999988886542 479999999998 455788887543
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-10 Score=99.58 Aligned_cols=208 Identities=20% Similarity=0.225 Sum_probs=120.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVR 81 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i~ 81 (379)
+.+||+||| .|+||+. ..||.+++++|+|+|.|+++.|.+ |+|+++... +.+++.+.. .++.
T Consensus 1 V~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVK 69 (221)
T ss_dssp EEEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEE
T ss_pred CEEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEE
Confidence 468999999 9999987 789999999999999999999976 666655443 345555543 3344
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++. ......++++.++..+.... +.++++.|=.|| ...+.++++...+ +..+.+.+.+.. -.....++
T Consensus 70 iv~--GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~~------DTik~v~~ 139 (221)
T PF01128_consen 70 IVE--GGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPVT------DTIKRVDD 139 (221)
T ss_dssp EEE----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-S------SEEEEEST
T ss_pred Eec--CChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEecc------ccEEEEec
Confidence 443 34567899999999987643 689999999999 4558888887665 233556666652 13334442
Q ss_pred CCCcEEEeeecCCCcccceeee-eEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFVSDLINC-GVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~-Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
++.+....+.. .+..+ .=-.|+.+. ++.+...... ... .+|- ..++..
T Consensus 140 -~~~v~~tldR~-----~l~~~QTPQ~F~~~~l~~a~~~a~~~--~~~------------------~tDd----asl~~~ 189 (221)
T PF01128_consen 140 -DGFVTETLDRS-----KLWAVQTPQAFRFELLLEAYEKADEE--GFE------------------FTDD----ASLVEA 189 (221)
T ss_dssp -TSBEEEEETGG-----GEEEEEEEEEEEHHHHHHHHHTHHHH--THH------------------HSSH----HHHHHH
T ss_pred -CCcccccCCHH-----HeeeecCCCeecHHHHHHHHHHHHhc--CCC------------------ccCH----HHHHHH
Confidence 56666544431 11111 112344333 3333322100 000 0010 112222
Q ss_pred ccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 238 LAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 238 l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+ +.++...+-+..-.-+.+|+|+..|..++
T Consensus 190 ~--g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 190 A--GKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp T--TS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred c--CCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2 56777776655667889999998876544
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=104.33 Aligned_cols=109 Identities=23% Similarity=0.394 Sum_probs=78.5
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.|.+|||||| +++|| . +|+|++++|+||++|+++.|.. ++|+...... .| ..++.++.
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~~vvi~~~~~~~---~~-----~~~g~~vv 65 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQG---RY-----AEFGLPVV 65 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhcccCCEEEEeCCCchh---hh-----hccCCcee
Confidence 456899999999 99999 6 9999999999999999999998 3344343322 11 12344443
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCC-hHHHHHHHHhcC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDAHRNYG 134 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~d-l~~~l~~~~~~~ 134 (379)
.-..... |...+++.+++.... +.+++++||+++ ..+ +..+.....+.+
T Consensus 66 ~D~~~~~-GPL~Gi~~al~~~~~---~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 66 PDELPGF-GPLAGILAALRHFGT---EWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ecCCCCC-CCHHHHHHHHHhCCC---CeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 3222222 999999999998874 479999999999 443 566666554433
|
|
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=107.33 Aligned_cols=129 Identities=19% Similarity=0.322 Sum_probs=88.2
Q ss_pred CCCCC-CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccc-hHHHHHHHHhhc
Q 016989 2 GSSED-DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE-EREFALYVSSIS 73 (379)
Q Consensus 2 ~~~~~-~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~-~~~i~~~l~~~~ 73 (379)
+.+|+ +.+.+|||||| .|+||+. ..||+|++++|+|+|+|+++.+.. |+|+++.. .+.+++.+..
T Consensus 17 ~~~~~~~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-- 89 (252)
T PLN02728 17 SAVVKEKSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-- 89 (252)
T ss_pred ccccccCceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--
Confidence 44454 45789999999 9999975 689999999999999999999974 66665543 3334444432
Q ss_pred ccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 74 NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 74 ~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
++.++.++. ...+..++++.++..+..+ .+.++++.++.|+ ...+..+++...+.+ +.++..+.
T Consensus 90 --~~~~i~~v~--gg~~r~~SV~~gl~~l~~~-~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~ 155 (252)
T PLN02728 90 --IDVPLKFAL--PGKERQDSVFNGLQEVDAN-SELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPV 155 (252)
T ss_pred --cCCceEEcC--CCCchHHHHHHHHHhccCC-CCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecc
Confidence 334454442 2345678899998887532 3456777777888 445788888776655 34555543
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-11 Score=87.42 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
+++.+. ++.|++++.|+ +++.|.+|+|+++|.|++++.|.+ |+|++++.|++++.|.+|+|++++
T Consensus 10 ~~~~i~-~~~Ig~~~~I~----~~~~i~~s~i~~~~~ig~~~~l~~----------svi~~~~~i~~~~~v~~~ii~~~~ 74 (81)
T cd04652 10 EKTSIK-RSVIGANCKIG----KRVKITNCVIMDNVTIEDGCTLEN----------CIIGNGAVIGEKCKLKDCLVGSGY 74 (81)
T ss_pred CCCEEe-CcEECCCCEEC----CCCEEeCcEEeCCCEECCCCEEec----------cEEeCCCEECCCCEEccCEECCCc
Confidence 344443 35566666665 445788999999999999999977 999999999999999999999999
Q ss_pred eecccc
Q 016989 368 TLNVSV 373 (379)
Q Consensus 368 ~i~~~~ 373 (379)
.|+++.
T Consensus 75 ~i~~~~ 80 (81)
T cd04652 75 RVEAGT 80 (81)
T ss_pred EeCCCC
Confidence 999874
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=85.91 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec-cEEC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIVL 364 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~-~ii~ 364 (379)
+++.|++++.|++++.|+++|. +++.|.+|+|+++|.|+++++|.+ |++++++.|++++.+.+ ++|+
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~----------sii~~~~~v~~~~~~~~~~~ig 73 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS----------SIVGWNSTVGRWTRLENVTVLG 73 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC----------CEEeCCCEECCCcEEecCEEEC
Confidence 3445555555555555555555 667899999999999999999988 99999999999999975 8999
Q ss_pred CCceecc
Q 016989 365 PNKTLNV 371 (379)
Q Consensus 365 ~~~~i~~ 371 (379)
++++|++
T Consensus 74 ~~~~i~~ 80 (80)
T cd05824 74 DDVTIKD 80 (80)
T ss_pred CceEECC
Confidence 9998874
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=96.18 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=136.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
++..|||+|.| ||.--| .|.+.+++|+|||.|+|+.+.+ |+|.+. .++ +.+. ...+|.++
T Consensus 2 ~~~iAiIpAR~---gSKgI~-----~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD-s~~-Il~~----A~~ygak~ 67 (228)
T COG1083 2 MKNIAIIPARG---GSKGIK-----NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD-SEE-ILEE----AKKYGAKV 67 (228)
T ss_pred cceEEEEeccC---CCCcCC-----ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC-cHH-HHHH----HHHhCccc
Confidence 45689999999 777777 7999999999999999999987 555544 333 3332 34466776
Q ss_pred EEecCCC----CCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeE
Q 016989 81 RYLREDK----PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (379)
Q Consensus 81 ~~~~~~~----~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 154 (379)
.+.+..+ ...+-.+++++.+..+.+ .+.++.+++-.++ ..+++..++.+.+++.+..+.+.+. +...|..
T Consensus 68 ~~~Rp~~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~---e~~p~k~ 143 (228)
T COG1083 68 FLKRPKELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC---EHHPYKA 143 (228)
T ss_pred cccCChhhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec---ccchHHH
Confidence 5444321 233345566677766543 2468899999988 6789999999999888877777765 3333433
Q ss_pred EEEeCCCCcEEEeeecCC-------CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccc
Q 016989 155 LVADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (379)
Q Consensus 155 v~~d~~~~~v~~~~ekp~-------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
...+ ++.+..+.+.|. .++..-.++.+|+++++.|..-....
T Consensus 144 f~~~--~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~~~f----------------------------- 192 (228)
T COG1083 144 FSLN--NGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLENDCFF----------------------------- 192 (228)
T ss_pred HHhc--CCceeecccCCccccccccchhhhhhcCcEEEehHHHHhhcCcee-----------------------------
Confidence 3332 477887777652 23344557889999988776433211
Q ss_pred ccccccccccccCCceEEEEEccc-chhhcCCccchhhcchHHH
Q 016989 228 VRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 228 ~~l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~~l 270 (379)
..+...|..+. ...||++..|+..+..++.
T Consensus 193 -------------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~ 223 (228)
T COG1083 193 -------------IPNTILYEMPEDESIDIDTELDLEIAENLIF 223 (228)
T ss_pred -------------cCCceEEEcCcccccccccHHhHHHHHHHhh
Confidence 12333444433 4689999999998876654
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=100.79 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=93.6
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEccc-chHHHHHHHHhhcccCCc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFY-EEREFALYVSSISNELRI 78 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~-~~~~i~~~l~~~~~~~~~ 78 (379)
++.+.+|||||| .|+||.. ..||.+++++|+|||+|+++.|.. |+|+++. ....+.++.. ...+.
T Consensus 2 ~~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~ 73 (230)
T COG1211 2 RMMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADK 73 (230)
T ss_pred CceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCC
Confidence 356799999999 9999999 899999999999999999999986 6676665 3334544443 11223
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
.+.++. ......++++.+++.+....++.|+|+.+-.+| ...+.++++... +..+.+++.+.
T Consensus 74 ~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 74 RVEVVK--GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred eEEEec--CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 455553 445678999999999885335789999999999 456888885433 23455666655
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=109.49 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=79.9
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.+.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. |+|+.......+.+++. +..+...
T Consensus 5 ~i~~VILAgG--~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~~~~iivvv~~~~~~~~~~~~------~~~~i~d 72 (366)
T PRK14489 5 QIAGVILAGG--LSRRMNG----RDKALILLGGKPLIERVVDRLRPQFARIHLNINRDPARYQDLFP------GLPVYPD 72 (366)
T ss_pred CceEEEEcCC--cccCCCC----CCCceeEECCeeHHHHHHHHHHhhCCEEEEEcCCCHHHHHhhcc------CCcEEec
Confidence 5789999999 9999951 49999999999999999999875 55533333332333221 1222221
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCce
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ 137 (379)
......|...+++.+++.++. +.+++++||+++ ...+..+++.+...++++
T Consensus 73 ~~~g~~G~~~si~~gl~~~~~---~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 73 ILPGFQGPLSGILAGLEHADS---EYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred CCCCCCChHHHHHHHHHhcCC---CcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 222335888999999887753 469999999988 445788887655545444
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=95.72 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=84.8
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEE-EcccchHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv-~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
...+.+|||||| .|+||+. +|-|+|+.|+|+++++++.+.+ ++| +++.......... ...+..
T Consensus 3 ~~~v~~VvLAAG--rssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~~~~~~ 71 (199)
T COG2068 3 PSTVAAVVLAAG--RSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----AQLGVT 71 (199)
T ss_pred CcceEEEEEccc--ccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----ccCCeE
Confidence 356899999999 9999997 9999999999999999998875 554 4444222222222 122334
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhc
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY 133 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~ 133 (379)
+.+. .+...|.+.+++.+......+. +.++++.||+++ ..++..+++.+...
T Consensus 72 ~v~n-pd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 72 VVVN-PDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EEeC-cchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 4333 3445799999999999887543 479999999998 67789988876654
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=83.54 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=53.2
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec-cEECCCc
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIVLPNK 367 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~-~ii~~~~ 367 (379)
++.+.+ +.|+++++|+ +++.+.+|+|+++|.|+++++|.+ |+|+++|.|++++.+.+ +++++++
T Consensus 11 ~~~i~~-s~ig~~~~Ig----~~~~i~~svi~~~~~i~~~~~i~~----------svv~~~~~i~~~~~i~~~~~ig~~~ 75 (79)
T cd03356 11 NAIIKN-SVIGDNVRIG----DGVTITNSILMDNVTIGANSVIVD----------SIIGDNAVIGENVRVVNLCIIGDDV 75 (79)
T ss_pred CCEEeC-CEECCCCEEC----CCCEEeCCEEeCCCEECCCCEEEC----------CEECCCCEECCCCEEcCCeEECCCe
Confidence 344443 5555666665 445688899999999999999887 99999999999999976 9999998
Q ss_pred eecc
Q 016989 368 TLNV 371 (379)
Q Consensus 368 ~i~~ 371 (379)
.|++
T Consensus 76 ~i~~ 79 (79)
T cd03356 76 VVED 79 (79)
T ss_pred EECc
Confidence 8874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=94.86 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=51.7
Q ss_pred cCCccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCC
Q 016989 276 TSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 355 (379)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~ 355 (379)
..|.+......++++.+.++|.||+++.||++++-..-.++-.||.+|.|.++|.|+...- ..+.||++|+||++
T Consensus 10 ~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~-----~p~~IG~~vtIGH~ 84 (176)
T COG0663 10 LSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG-----YPVTIGDDVTIGHG 84 (176)
T ss_pred CCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC-----CCeEECCCcEEcCc
Confidence 4555555556689999999999999999999998222223444444444444444443211 11444444444444
Q ss_pred cEEeccEECCCceec
Q 016989 356 VVVTNSIVLPNKTLN 370 (379)
Q Consensus 356 ~~i~~~ii~~~~~i~ 370 (379)
|.|++|.|++++.||
T Consensus 85 aivHGc~Ig~~~lIG 99 (176)
T COG0663 85 AVVHGCTIGDNVLIG 99 (176)
T ss_pred cEEEEeEECCCcEEe
Confidence 444444444444444
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-10 Score=86.74 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=60.9
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
+++.+ .++.||+++.|+ + +.|.+|+|+++|.|+++++|.+ |+|++++.|++++.+.+|+|++++
T Consensus 6 ~~~~i-~~s~Ig~~~~I~-~----~~I~~svi~~~~~Ig~~~~I~~----------siI~~~~~Ig~~~~i~~siig~~~ 69 (104)
T cd04651 6 RRGEV-KNSLVSEGCIIS-G----GTVENSVLFRGVRVGSGSVVED----------SVIMPNVGIGRNAVIRRAIIDKNV 69 (104)
T ss_pred CCCEE-EeEEECCCCEEc-C----eEEEeCEEeCCCEECCCCEEEE----------eEEcCCCEECCCCEEEeEEECCCC
Confidence 45555 346777777776 4 4688999999999999999988 999999999999999999999999
Q ss_pred eeccccc
Q 016989 368 TLNVSVH 374 (379)
Q Consensus 368 ~i~~~~~ 374 (379)
.|++++.
T Consensus 70 ~Ig~~~~ 76 (104)
T cd04651 70 VIPDGVV 76 (104)
T ss_pred EECCCCE
Confidence 9999865
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-10 Score=96.83 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCc
Q 016989 277 SPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~ 356 (379)
.|.+.....+++++.+.+++.||+++.|+++|+-...++..+||++|.||++|.|+.. ...+|+|+++|+|+++|
T Consensus 8 ~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~-----~~~~siIg~~~~Ig~~a 82 (192)
T TIGR02287 8 TPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGF-----PGQDTVVEENGHVGHGA 82 (192)
T ss_pred CCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEecc-----CCCCCeECCCCEECCCC
Confidence 3444444445688888889999999999987651001135688888888888888532 11237777777777777
Q ss_pred EEeccEECCCceecccc
Q 016989 357 VVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~~~ii~~~~~i~~~~ 373 (379)
.|++|+|++++.||.++
T Consensus 83 ~I~~siIg~~~~IG~ga 99 (192)
T TIGR02287 83 ILHGCIVGRNALVGMNA 99 (192)
T ss_pred EEcCCEECCCCEECCCc
Confidence 77777777777776654
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-10 Score=81.25 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=55.4
Q ss_pred ECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 298 VHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 298 i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|++++.|++++ .+.+++||++|+|+++++|.+ |+|+++|.|+++|.|.+|+|++++.|++++.
T Consensus 2 ig~~~~I~~~~----~i~~s~ig~~~~Ig~~~~i~~----------svi~~~~~i~~~~~i~~svv~~~~~i~~~~~ 64 (79)
T cd03356 2 IGESTVIGENA----IIKNSVIGDNVRIGDGVTITN----------SILMDNVTIGANSVIVDSIIGDNAVIGENVR 64 (79)
T ss_pred ccCCcEECCCC----EEeCCEECCCCEECCCCEEeC----------CEEeCCCEECCCCEEECCEECCCCEECCCCE
Confidence 56677777543 577899999999999999988 9999999999999999999999999998864
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=91.63 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=50.7
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 366 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~ 366 (379)
+++.+.++++||+++.|++ ++.|. +++||++|.|++++.|.+ |+|++++.|++++.+.+|+|+++
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~----~~~i~~~~~Ig~~~~I~~~~~i~~----------siig~~~~I~~~~~i~~siIg~~ 93 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGP----NAYIRGYTVLGDGCVVGNSVEVKN----------SIIMDGTKVPHLNYVGDSVLGEN 93 (163)
T ss_pred CCCEEeCCeEECCCCEECC----CCEEcCCCEECCCCEECCCcEEee----------eEecCCCEeccCCEEecCEECCC
Confidence 3344444444444444443 33455 577777777777777765 89999999999888888899999
Q ss_pred ceeccccc
Q 016989 367 KTLNVSVH 374 (379)
Q Consensus 367 ~~i~~~~~ 374 (379)
+.|++++.
T Consensus 94 ~~I~~~~~ 101 (163)
T cd05636 94 VNLGAGTI 101 (163)
T ss_pred CEECCCcE
Confidence 88888764
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=93.99 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=52.2
Q ss_pred CCCCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 285 DGTKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 285 ~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
.+++++.+.+++.||+++.|+++|+ |. +.+||++|.||++|.|+.... .+|+|++++.||++|.+.+
T Consensus 18 ~I~~~a~I~g~V~IG~~~~I~~~av----Irgd~~~i~Ig~~~~Ig~~~~I~~~~~-----~~siIg~~~~Ig~~a~i~g 88 (196)
T PRK13627 18 FVHPSAVLIGDVIVGAGVYIGPLAS----LRGDYGRLIVQAGANLQDGCIMHGYCD-----TDTIVGENGHIGHGAILHG 88 (196)
T ss_pred EECCCCEEECceEECCCCEECCCCE----EecCCccEEECCCCEECCCCEEeCCCC-----CCCEECCCCEECCCcEEee
Confidence 3467788888888888888887765 33 256777777777777755321 1356666666666666666
Q ss_pred cEECCCceecccc
Q 016989 361 SIVLPNKTLNVSV 373 (379)
Q Consensus 361 ~ii~~~~~i~~~~ 373 (379)
|+|++++.||.++
T Consensus 89 ~vIG~~v~IG~ga 101 (196)
T PRK13627 89 CVIGRDALVGMNS 101 (196)
T ss_pred EEECCCCEECcCC
Confidence 6666666666544
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=99.32 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=47.0
Q ss_pred cccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 280 LLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
+......++++.+.+++.|++++.|++++ .|+ +++|+++|.||++|.|+++ |+|+.+|+|.+++.|
T Consensus 102 I~~~A~i~~~A~i~~~~~ig~~~vI~~~v----~IG~~~~I~~~~vIg~~~~IG~~---------~~i~~~v~I~~~~~I 168 (338)
T COG1044 102 IHPTAVIDPTATIGKNVSIGPNVVIGAGV----VIGENVVIGAGAVIGENVKIGDG---------TVIHPNVTIYHNVVI 168 (338)
T ss_pred cCccccccCcCccCCCCccCCCeEECCCC----EECCCcEECCCCEECCCcEECCC---------cEEcCCCEEecCcEE
Confidence 33344445666666666666666666544 455 6666666666666666665 666666666666666
Q ss_pred e-ccEECCCceeccc
Q 016989 359 T-NSIVLPNKTLNVS 372 (379)
Q Consensus 359 ~-~~ii~~~~~i~~~ 372 (379)
. +|+|.++++||.+
T Consensus 169 G~~v~I~~GavIG~d 183 (338)
T COG1044 169 GNNVIIHSGAVIGAD 183 (338)
T ss_pred CCceEECCCCEEccC
Confidence 3 6666666666654
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=79.89 Aligned_cols=63 Identities=14% Similarity=0.335 Sum_probs=55.7
Q ss_pred ECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 298 VHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 298 i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|++++.|++++ .|.+++||++|.|+++++|.+ |+|++++.|+++|.|.+|++++++.|++++.
T Consensus 2 ig~~~~I~~~~----~i~~~~Ig~~~~I~~~~~i~~----------s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~ 64 (81)
T cd04652 2 VGENTQVGEKT----SIKRSVIGANCKIGKRVKITN----------CVIMDNVTIEDGCTLENCIIGNGAVIGEKCK 64 (81)
T ss_pred ccCCCEECCCC----EEeCcEECCCCEECCCCEEeC----------cEEeCCCEECCCCEEeccEEeCCCEECCCCE
Confidence 56677777543 577899999999999999988 9999999999999999999999999999875
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-10 Score=100.83 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=54.7
Q ss_pred eEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 296 VYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
..+|..+.|++ +|.|+ +|.| ..+.||++|.|+.. +.+.+|+|++|++||+|+.|.|||||+++.||+++.
T Consensus 329 ~l~g~d~iv~~----~t~i~~~s~i-k~SviG~nC~Ig~~----~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~ 399 (433)
T KOG1462|consen 329 ALVGADSIVGD----NTQIGENSNI-KRSVIGSNCDIGER----VKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSK 399 (433)
T ss_pred eccchhhccCC----Cceeccccee-eeeeecCCccccCC----cEEEeeEeecCcEecCCcceecceecccceecCCCe
Confidence 56666666663 44666 5544 45667888888776 777889999999999999999999999999999876
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=77.91 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=38.4
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
+++.|.+++|++++.|+++++|.+ |+|++++.|++++.|. ++++++++.|++
T Consensus 27 ~~~~i~~s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 27 KNVVIDNSYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred CCCEEeCcEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 344667777777777777777765 7888888888887775 677777777764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=101.38 Aligned_cols=106 Identities=15% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. ++|+.+... ...+ . .+++.+.
T Consensus 172 ~~~i~~iILAGG--~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~~~~vvV~~~~~~--~~~~-~----~~~v~~i 237 (369)
T PRK14490 172 EVPLSGLVLAGG--RSSRMGS-----DKALLSYHESNQLVHTAALLRPHCQEVFISCRAEQ--AEQY-R----SFGIPLI 237 (369)
T ss_pred cCCceEEEEcCC--ccccCCC-----CcEEEEECCccHHHHHHHHHHhhCCEEEEEeCCch--hhHH-h----hcCCcEE
Confidence 355789999999 9999986 9999999999999999999975 555554322 1111 1 1244443
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHH
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDA 129 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~ 129 (379)
.. .....|...++..+...... +.++++.||+|+ + ..+..+++.
T Consensus 238 ~d-~~~~~Gpl~gi~~al~~~~~---~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 238 TD-SYLDIGPLGGLLSAQRHHPD---AAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred eC-CCCCCCcHHHHHHHHHhCCC---CcEEEEeCCcCCCCHHHHHHHHHh
Confidence 32 22345878888888765442 369999999999 3 346666653
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=96.63 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=58.6
Q ss_pred CccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeeccc-ccccccceEECCCcEECCCc
Q 016989 278 PNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGD-FNAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~-~~~~~~~sii~~~~~i~~~~ 356 (379)
|.+.....+.+++.+.+++.||+++.|+++|+-...+.+++||++|.|+++|.|..... ..+...+|+||++|.||++|
T Consensus 53 p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~a 132 (269)
T PLN02296 53 PVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSA 132 (269)
T ss_pred CccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCc
Confidence 33333334567888888899999999998775111112347777777777777753211 11122336777777777777
Q ss_pred EEeccEECCCceecccc
Q 016989 357 VVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~~~ii~~~~~i~~~~ 373 (379)
.|.+|+|++++.||.++
T Consensus 133 vI~g~~Igd~v~IG~ga 149 (269)
T PLN02296 133 VLHGCTVEDEAFVGMGA 149 (269)
T ss_pred eecCCEECCCcEECCCc
Confidence 66666666666666554
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=78.54 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=54.6
Q ss_pred ECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 298 VHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 298 i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
||+++.|+++| .|.+++|+++|.|++++.|.+ |+|++++.|++++.|.+|+|++++.|++++.
T Consensus 2 ig~~~~I~~~~----~i~~s~ig~~~~ig~~~~i~~----------s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~ 64 (79)
T cd05787 2 IGRGTSIGEGT----TIKNSVIGRNCKIGKNVVIDN----------SYIWDDVTIEDGCTIHHSIVADGAVIGKGCT 64 (79)
T ss_pred ccCCCEECCCC----EEeccEECCCCEECCCCEEeC----------cEEeCCCEECCCCEEeCcEEcCCCEECCCCE
Confidence 56677777554 567899999999999999987 9999999999999999999999999998765
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=94.44 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=52.5
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcEEe-ceEECCCCEECCCcEEeecccccc-----cccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNA-----KLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~-----~~~~sii~~~~~i~~ 354 (379)
+++.+.+++.||+++.|+++.+ +++.|. +++||++|+||++|+|..+....+ ...+++|+++|.||.
T Consensus 105 p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa 184 (269)
T TIGR00965 105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGA 184 (269)
T ss_pred CCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECC
Confidence 4455555555555555544321 566666 577777778888877777643211 124477777777777
Q ss_pred CcEE-eccEECCCceeccccc
Q 016989 355 EVVV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 355 ~~~i-~~~ii~~~~~i~~~~~ 374 (379)
+|.| .+++|+++++|+.++.
T Consensus 185 ~a~I~~GV~IG~gavIGaGav 205 (269)
T TIGR00965 185 RSEIVEGVIVEEGSVISMGVF 205 (269)
T ss_pred CCEEcCCCEECCCCEEeCCCE
Confidence 7777 3666666666666543
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=93.73 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=52.9
Q ss_pred CccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccc-cceEECCCcEECCCc
Q 016989 278 PNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL-GITILGEAVGVEDEV 356 (379)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~-~~sii~~~~~i~~~~ 356 (379)
|.+.......+++.+.+++.||+++.|+++++-..-....+||++|.||++|.|+........+ .+++||++|+||++|
T Consensus 60 p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s 139 (246)
T PLN02472 60 PKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS 139 (246)
T ss_pred CccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence 3333334456888888899999999999877600000124666666666666664321000001 125555555555555
Q ss_pred EEeccEECCCceecccc
Q 016989 357 VVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~~~ii~~~~~i~~~~ 373 (379)
.|.+|+|++++.||.++
T Consensus 140 ~L~~~~Igd~v~IG~~s 156 (246)
T PLN02472 140 LLRSCTIEPECIIGQHS 156 (246)
T ss_pred EECCeEEcCCCEECCCC
Confidence 55555555555555543
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-09 Score=77.48 Aligned_cols=49 Identities=29% Similarity=0.270 Sum_probs=45.5
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+++||++|.||++++|.+ |+|+++++|++++.|.+|++++++.|++++.
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~----------sii~~~~~i~~~~~i~~sii~~~~~v~~~~~ 65 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQR----------CVILSNSTVRDHSWVKSSIVGWNSTVGRWTR 65 (80)
T ss_pred CCEECCCCEECCCcEEee----------eEEcCCCEECCCCEEeCCEEeCCCEECCCcE
Confidence 678999999999999987 9999999999999999999999999998764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-08 Score=91.95 Aligned_cols=181 Identities=17% Similarity=0.313 Sum_probs=110.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc----------------EEEEcc-cchHHHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR----------------IYLVGF-YEEREFA 66 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~----------------iiv~~~-~~~~~i~ 66 (379)
.++.+|||||| +|||| +...||+|+||+ |+|++++.++.+.. +++.+. ...+.+.
T Consensus 14 ~~va~viLaGG--~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 14 GKVAVLLLAGG--QGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred CCEEEEEECCC--ccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 46889999999 99999 458899999998 79999999998853 344444 5556689
Q ss_pred HHHHhhcccCCc---cEEEecCC---------------------CCCChHHHHHHH-----HHhhccCCCCeEEEEcCCe
Q 016989 67 LYVSSISNELRI---PVRYLRED---------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDV 117 (379)
Q Consensus 67 ~~l~~~~~~~~~---~i~~~~~~---------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~ 117 (379)
+|+.+ .+.+|+ .+.+..|. .+.|.++..... ++.+....-+++.+.+.|+
T Consensus 89 ~~~~~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 89 KFFKE-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHh-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 99987 345565 34433321 255666554432 3333333346899999999
Q ss_pred ee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEEEeeecCCCcc----------cceeeeeEEEe
Q 016989 118 CC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFV----------SDLINCGVYVF 186 (379)
Q Consensus 118 i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~----------~~~~~~Giy~~ 186 (379)
++ ...=..++-.+.++++++.+-+.+.. ...+.-|.+...+..-.+..+.+-|.... -+..++.+++|
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~-~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~f 246 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKR-YPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGELQYNAGNIANHFF 246 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECC-CCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcEecccchHhhhee
Confidence 76 33334456667777888776554432 12344455554311224555555442211 11223445566
Q ss_pred CHhhHHHh
Q 016989 187 TPDIFNAI 194 (379)
Q Consensus 187 ~~~~l~~l 194 (379)
+-+.++.+
T Consensus 247 sl~fl~~~ 254 (323)
T cd04193 247 SLDFLEKA 254 (323)
T ss_pred CHHHHHHH
Confidence 66665544
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-09 Score=86.93 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=42.2
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeec-----cc-------ccccccceEECCCc
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAE-----GD-------FNAKLGITILGEAV 350 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~-----~~-------~~~~~~~sii~~~~ 350 (379)
++++.+.+++.||+++.|+++|+ |. ++.||++|.|+++|.|... .+ ..+.+++++||++|
T Consensus 10 ~~~a~i~g~v~IG~~~~I~~~~~----i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 10 HPTAVLIGDVIIGKNCYIGPHAS----LRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CCCCEEEccEEECCCCEECCCcE----EeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 35566666677777777776553 32 2455555555555555210 00 01222235566666
Q ss_pred EECCCcEEe-ccEECCCceeccc
Q 016989 351 GVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 351 ~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
.|+.++.|. +++|++++.|+.+
T Consensus 86 ~Ig~~~~I~~g~~Ig~~~~Ig~~ 108 (155)
T cd04745 86 LVGMNAVVMDGAVIGEESIVGAM 108 (155)
T ss_pred EECCCCEEeCCCEECCCCEECCC
Confidence 666665553 3555555555554
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=91.73 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=71.8
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch--HHHHHHHHhhcccCCccEEE
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIPVRY 82 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~--~~i~~~l~~~~~~~~~~i~~ 82 (379)
||||||| .++|| + +|.|++++|+|||+|+++.+.. ++|++.... +.+.+++.. .++.+..
T Consensus 2 aiIlA~G--~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~v~ 69 (233)
T cd02518 2 AIIQARM--GSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKVFR 69 (233)
T ss_pred EEEeeCC--CCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeEEE
Confidence 7999999 89999 5 5999999999999999999864 666665442 345555432 2343322
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCce
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ 137 (379)
.+. .+.......+.+.. ..+.++++.||+|+ ...++++++.+...+.+.
T Consensus 70 --~~~-~~~l~~~~~~~~~~---~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~ 120 (233)
T cd02518 70 --GSE-EDVLGRYYQAAEEY---NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADY 120 (233)
T ss_pred --CCc-hhHHHHHHHHHHHc---CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 121 12222222222221 23579999999999 566899999877655544
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=78.81 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=30.3
Q ss_pred cceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 342 GITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 342 ~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
++|+|++++.+++++.|.+++|++++.|++++.
T Consensus 61 ~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~ 93 (101)
T cd05635 61 EDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTN 93 (101)
T ss_pred CccEEcCCCEecCcCEEeeeEECCCCEECCCce
Confidence 349999999999999999999999999999865
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=80.90 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=59.8
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccc------cccccceEECCCcEECCCcEEe-
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDF------NAKLGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~------~~~~~~sii~~~~~i~~~~~i~- 359 (379)
+++.+.+++.||+++.|+++ +.|. +++||++|.|++++.+.+.... .+.++.++|+++|.|+.++.+.
T Consensus 9 ~~~~i~~~~~Ig~~~~I~~~----~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 84 (119)
T cd03358 9 TNVFIENDVKIGDNVKIQSN----VSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILP 84 (119)
T ss_pred CCcEECCCcEECCCcEECCC----cEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeC
Confidence 44556666666666666644 4564 8999999999999988764332 1236779999999999999885
Q ss_pred ccEECCCceeccccc
Q 016989 360 NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ~~ii~~~~~i~~~~~ 374 (379)
++.|++++.|+.++.
T Consensus 85 ~~~ig~~~~i~~~~~ 99 (119)
T cd03358 85 GVTIGEYALVGAGAV 99 (119)
T ss_pred CcEECCCCEEccCCE
Confidence 688888888887543
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-10 Score=102.99 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=49.0
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc-------------EEEEcccchHHHHHHHHhhc
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------------IYLVGFYEEREFALYVSSIS 73 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~-------------iiv~~~~~~~~i~~~l~~~~ 73 (379)
.+|+|||| .||||+- ..||+|+||+ |+|+|+|.++++.. ++++.....+.+.+|+++..
T Consensus 2 a~viLaGG--~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGG--LGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCC--CccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 58999999 9999964 8999999999 99999999999952 45555555567899998754
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=91.96 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=42.9
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeecccccc-----cccceEECCCcEECCCcEE-eccEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNA-----KLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~-----~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~ 374 (379)
+++.|. ++.||++|.||++|+|..+....+ ...+++|+++|.||.+|.| .+++||++++|+.++.
T Consensus 137 ~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~v 208 (272)
T PRK11830 137 EGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVF 208 (272)
T ss_pred CCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCE
Confidence 455565 677777777777777777643221 1235788888888888877 4667777776666553
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=95.57 Aligned_cols=106 Identities=14% Similarity=0.236 Sum_probs=75.6
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
..+.+|||||| +|+||+. +|+|+++.|+||++|+++.+.. ++|+.+.... .. . ...++.+.
T Consensus 159 ~~i~~IILAGG--kSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~~~~ViVv~~~~~~--~~-~----~~~~v~~I- 223 (346)
T PRK14500 159 TPLYGLVLTGG--KSRRMGK-----DKALLNYQGQPHAQYLYDLLAKYCEQVFLSARPSQW--QG-T----PLENLPTL- 223 (346)
T ss_pred CCceEEEEecc--ccccCCC-----CcccceeCCccHHHHHHHHHHhhCCEEEEEeCchHh--hh-c----cccCCeEE-
Confidence 36789999999 9999986 9999999999999999999886 6666543211 10 0 00112222
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHHH
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAH 130 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~~ 130 (379)
.......|...+++.++..... +.++++.||+|+ + ..+..+++.+
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~~---~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYPG---VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCCC---CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 2223356999999999887543 258999999998 4 4467777754
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=85.35 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=51.9
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe---------
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT--------- 359 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~--------- 359 (379)
++.|.+++.|++++.|+ +++.|.+|+|+++|.|++++.+.+ |+|++++.|++++.+.
T Consensus 47 ~~~i~~~~~Ig~~~~I~----~~~~i~~siig~~~~I~~~~~i~~----------siIg~~~~I~~~~~i~~~~~~~~~~ 112 (163)
T cd05636 47 NAYIRGYTVLGDGCVVG----NSVEVKNSIIMDGTKVPHLNYVGD----------SVLGENVNLGAGTITANLRFDDKPV 112 (163)
T ss_pred CCEEcCCCEECCCCEEC----CCcEEeeeEecCCCEeccCCEEec----------CEECCCCEECCCcEEcccCcCCcce
Confidence 33333344444444444 556788899999999999888877 8899999999988873
Q ss_pred ----------------ccEECCCceeccccc
Q 016989 360 ----------------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ----------------~~ii~~~~~i~~~~~ 374 (379)
+++|++++.||.++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~ 143 (163)
T cd05636 113 KVRLKGERVDTGRRKLGAIIGDGVKTGINVS 143 (163)
T ss_pred EEEecCcceecCCcccCcEEcCCeEECCCcE
Confidence 477888888877754
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=84.23 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEec----eEECCCCEECCCcEEeecc-----c-------ccccccceEECCC
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVTN----AIVGWKSSIGRWSRVQAEG-----D-------FNAKLGITILGEA 349 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~----s~ig~~~~ig~~~~i~~~~-----~-------~~~~~~~sii~~~ 349 (379)
.++++.|.+++.||+++.|+++|. |.. .+||++|.|+++|.|.... + .++.+.+++|+++
T Consensus 9 i~~~~~i~~~v~iG~~~~I~~~a~----I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 84 (154)
T cd04650 9 VHPTSYVIGDVVIGELTSVWHYAV----IRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY 84 (154)
T ss_pred ECCCCEEEeeEEECCCCEEcCCeE----EEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC
Confidence 346666777777777777776653 432 4677777777777765420 0 1222333555555
Q ss_pred cEECCCcEE-eccEECCCceeccc
Q 016989 350 VGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 350 ~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
|.|+.++.+ .+++|++++.|+.+
T Consensus 85 ~~Ig~~~~i~~~~~Ig~~~~vg~~ 108 (154)
T cd04650 85 VIVGMGAILLNGAKIGDHVIIGAG 108 (154)
T ss_pred CEEcCCCEEeCCCEECCCCEECCC
Confidence 555555554 24455555555443
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=81.54 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=30.7
Q ss_pred cEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 312 AVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 312 ~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+.|. +++||++|.|++++.|.+. ........++|+++|.|+.++.| .++.|++++.|+.++
T Consensus 44 ~~I~~~~~IG~~~~I~~~~~igg~-~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 44 ATVGSCAQIGKNVHLSAGAVIGGV-LEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred CEECCCCEECCCCEECCCCEECCc-ccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCC
Confidence 3443 4555555555555555421 00111123666666666666666 355566655555554
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=94.71 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=8.1
Q ss_pred eEECCCcEECCCcEE
Q 016989 344 TILGEAVGVEDEVVV 358 (379)
Q Consensus 344 sii~~~~~i~~~~~i 358 (379)
++||++|.||.++.|
T Consensus 196 vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 196 VIIEDDVEIGANTTI 210 (324)
T ss_pred EEECCCcEECCCCEE
Confidence 555555555555555
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=93.28 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=21.4
Q ss_pred ceEECCCcEECCCcEEe-----ccEECCCceecccc
Q 016989 343 ITILGEAVGVEDEVVVT-----NSIVLPNKTLNVSV 373 (379)
Q Consensus 343 ~sii~~~~~i~~~~~i~-----~~ii~~~~~i~~~~ 373 (379)
+++||++|.||.++.|. +++|+++++|++.+
T Consensus 203 ~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v 238 (343)
T PRK00892 203 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV 238 (343)
T ss_pred cEEECCCcEECCCcEEecCccccceeCCCCEEeCCe
Confidence 47888888888888883 45666666665554
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-09 Score=100.41 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=59.0
Q ss_pred cCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceeccc
Q 016989 294 GDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
.+.+||.|++|+ .++.|.+|.|++||+||+||+|.. |+||++|+|++||.+ .+|||+.++++|++
T Consensus 349 ~NSVIG~~c~Ig----sN~~I~~S~iw~~v~Igdnc~I~~----------aii~d~v~i~~~~~l~~g~vl~~~VVv~~~ 414 (673)
T KOG1461|consen 349 SNSVIGANCRIG----SNVRIKNSFIWNNVTIGDNCRIDH----------AIICDDVKIGEGAILKPGSVLGFGVVVGRN 414 (673)
T ss_pred ecceecCCCEec----CceEEeeeeeecCcEECCCceEee----------eEeecCcEeCCCcccCCCcEEeeeeEeCCC
Confidence 455677777777 455799999999999999999998 999999999999999 59999999999998
Q ss_pred cc
Q 016989 373 VH 374 (379)
Q Consensus 373 ~~ 374 (379)
..
T Consensus 415 ~~ 416 (673)
T KOG1461|consen 415 FV 416 (673)
T ss_pred cc
Confidence 65
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=83.55 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEE----eceEECCCCEECCCcEEeeccc------------------ccccccce
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVV----TNAIVGWKSSIGRWSRVQAEGD------------------FNAKLGIT 344 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i----~~s~ig~~~~ig~~~~i~~~~~------------------~~~~~~~s 344 (379)
++++.|.+++.||+++.|+++|. + ..++||++|.|+++|.|.+... ..+.++.+
T Consensus 9 ~~~a~i~g~v~IG~~~~I~~~a~----I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~ 84 (164)
T cd04646 9 CQESEIRGDVTIGPGTVVHPRAT----IIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEAL 84 (164)
T ss_pred CCCCEEcCceEECCCCEEcCCeE----EecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEee
Confidence 35556666666666666665543 3 2345666666666666654311 12344457
Q ss_pred EECCCcEECCCcEE-eccEECCCceecccc
Q 016989 345 ILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 345 ii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+||++|.||.+|.| .+++|++++.||.++
T Consensus 85 ~IGd~~~Ig~~a~I~~gv~Ig~~~~Igags 114 (164)
T cd04646 85 KIGNNNVFESKSFVGKNVIITDGCIIGAGC 114 (164)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEEeCCe
Confidence 77777777777777 466677776666654
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=83.49 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=18.5
Q ss_pred eEECCCcEECCCcEEeccEECCCceecccc
Q 016989 344 TILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 344 sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++||++|.||.+|.|.++.|++++.|+.++
T Consensus 83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s 112 (167)
T cd00710 83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNA 112 (167)
T ss_pred EEECCCCEECCCCEEECCEECCCCEEcCCC
Confidence 666666666666666666666666665543
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=90.60 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=18.8
Q ss_pred eEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 344 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 344 sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
++||++|.|++++.| ++|+||+++.|+.++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~ 133 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNA 133 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCc
Confidence 666666666666666 466666666665554
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-09 Score=97.21 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=52.4
Q ss_pred CCCeEEecCeEECCCcEECCCCC-------------CCcEEeceEECCCCEECCCcEEeeccc--------ccccccceE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITI 345 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~si 345 (379)
.++..+.+.+.||+++.|+++|+ .+|.+++|.||.+|.||+.++++++.. +..++++|.
T Consensus 278 ~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ 357 (460)
T COG1207 278 EPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKAT 357 (460)
T ss_pred ecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEeccc
Confidence 46666666666666666666655 446677788888888888888888843 133444444
Q ss_pred ECCCcEECCCcEEeccEECCCceeccc
Q 016989 346 LGEAVGVEDEVVVTNSIVLPNKTLNVS 372 (379)
Q Consensus 346 i~~~~~i~~~~~i~~~ii~~~~~i~~~ 372 (379)
||+++++++-++|.+|.||.++.||.+
T Consensus 358 ig~gsKa~HLtYlGDA~iG~~~NiGAG 384 (460)
T COG1207 358 IGKGSKAGHLTYLGDAEIGENVNIGAG 384 (460)
T ss_pred ccCCccccceeeeccceecCCceeccc
Confidence 455555555445555555555555544
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=86.29 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=10.9
Q ss_pred CCeEEecCeEECCCcEECCCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTA 308 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~ 308 (379)
+++.|.+++.||+++.|+++|
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~ 46 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNC 46 (193)
T ss_pred CCCEEeCcCEECCCCEECCCc
Confidence 445555555555555555444
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=78.42 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=42.1
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
+++||++|.||++++|. ..+....-+.+.||++|.||.+|.| +..||++++|+.++
T Consensus 47 ~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG~ga~I-gv~IG~~~vIGaGs 102 (147)
T cd04649 47 GVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLGANSGI-GISLGDNCIVEAGL 102 (147)
T ss_pred CEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEECCCCEE-eEEECCCCEECCCC
Confidence 68888888888888887 3233333344889999999999988 67777777777765
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=90.44 Aligned_cols=49 Identities=10% Similarity=0.305 Sum_probs=21.5
Q ss_pred CcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe
Q 016989 311 NAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 311 ~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++.|. +++||++|.|+++|.|++..- +.++...++||++|.|+++|.|.
T Consensus 44 ~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~ 96 (262)
T PRK05289 44 HVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTIN 96 (262)
T ss_pred CCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEe
Confidence 33444 455555555555555543100 00111125555555555555553
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=86.06 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEEC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVL 364 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~ 364 (379)
+++.|.+.+.|++++.|+++|. +++.|.++.||++|.|++++.|.+ |+|++++.|++++.|. +++|+
T Consensus 20 ~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~I~~~~~Ig 89 (193)
T cd03353 20 VDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEG----------AVIGNGATVGPFAHLRPGTVLG 89 (193)
T ss_pred CCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEe----------eEECCCCEECCccEEcCccEEC
Confidence 4455555555555555555555 566666666666666666666654 6666666666666664 55666
Q ss_pred CCceecccc
Q 016989 365 PNKTLNVSV 373 (379)
Q Consensus 365 ~~~~i~~~~ 373 (379)
+++.|++++
T Consensus 90 ~~~~Ig~~~ 98 (193)
T cd03353 90 EGVHIGNFV 98 (193)
T ss_pred CCCEECCcE
Confidence 555555543
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=91.12 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-----
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT----- 359 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~----- 359 (379)
+++++.|.+++.|++++.|+++| .|+ ++.||++|.|++++.|.+. ++||++|.|+++|.|.
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~----~I~~~v~IG~~~~I~~~~~I~g~---------~~IG~~~~I~~~a~Ig~~~q~ 71 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFC----VIGPNVVIGDGTVIGSHVVIDGH---------TTIGKNNRIFPFASIGEDPQD 71 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCe----EECCCCEECCCCEECCCCEEcCc---------cEECCCCEEcccceecCCcee
Confidence 45777777777777777777655 455 7777777777777777766 7777777777777775
Q ss_pred --------ccEECCCceeccccc
Q 016989 360 --------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 --------~~ii~~~~~i~~~~~ 374 (379)
.++||+++.|++++.
T Consensus 72 ~~~~g~~~~v~IG~~~~I~e~~~ 94 (262)
T PRK05289 72 LKYKGEPTRLVIGDNNTIREFVT 94 (262)
T ss_pred ecccCCCCeEEECCCCEECCCeE
Confidence 366777777766554
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=90.86 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=41.5
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEec--------cEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVTN--------SIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~~--------~ii~~~~~i~~~~~ 374 (379)
+++.|. +++||++|.|++++.|+...- +.++..+++||++|.|+++|.|.+ ++||+++.|++++.
T Consensus 40 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~ 116 (254)
T cd03351 40 SHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVH 116 (254)
T ss_pred CCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCE
Confidence 444454 666666666666666653100 011112489999999999999963 67888888877663
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=93.19 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=19.6
Q ss_pred eEECCCcEECCCcEEe---------------------ccEECCCceeccccc
Q 016989 344 TILGEAVGVEDEVVVT---------------------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 344 sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~ 374 (379)
|+||++|.|+++|.|. .++|++++.||+++.
T Consensus 158 ~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~ 209 (324)
T TIGR01853 158 VQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTT 209 (324)
T ss_pred CEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCE
Confidence 6666666666666663 356666666666654
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=87.30 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=37.8
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+++||++|.||++|.|.+ |+|+++|.||.+|.| .+++|++++.|+.++
T Consensus 126 ~tvIG~~v~IG~~s~L~~----------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs 174 (246)
T PLN02472 126 ETLIDRYVTIGAYSLLRS----------CTIEPECIIGQHSILMEGSLVETHSILEAGS 174 (246)
T ss_pred CcEECCCCEECCCcEECC----------eEEcCCCEECCCCEECCCCEECCCCEECCCC
Confidence 688899999999988876 888888888888877 467777777776654
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=84.59 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=40.9
Q ss_pred CeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEEC
Q 016989 289 NATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVL 364 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~ 364 (379)
++.|.+++.|+++++|+++|. .++.|. +++||++|.|++++.+.++ ++|+++|.||.++.|. +++|+
T Consensus 102 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---------~~ig~~~~ig~~~~v~~~~~ig 172 (197)
T cd03360 102 GCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG---------VTIGEGAFIGAGATIIQGVTIG 172 (197)
T ss_pred CCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCC---------cEECCCCEECCCCEEcCCCEEC
Confidence 344444444444444444433 233443 4444555555555544444 7777777777777664 56666
Q ss_pred CCceecccc
Q 016989 365 PNKTLNVSV 373 (379)
Q Consensus 365 ~~~~i~~~~ 373 (379)
+++.|+.+.
T Consensus 173 ~~~~v~~~~ 181 (197)
T cd03360 173 AGAIIGAGA 181 (197)
T ss_pred CCCEECCCC
Confidence 666666544
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-08 Score=85.03 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=27.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
++.||++|.|++++.|.++ +.|+++|.||.++.|. ++.|++++.|+.++
T Consensus 135 ~~~ig~~~~i~~~~~i~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~ 184 (201)
T TIGR03570 135 DCVIGDYVHIAPGVTLSGG---------VVIGEGVFIGAGATIIQGVTIGAGAIVGAGA 184 (201)
T ss_pred CCEECCCCEECCCCEEeCC---------cEECCCCEECCCCEEeCCCEECCCCEECCCC
Confidence 3444444444444444433 6677777777776663 55556555555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-08 Score=82.44 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=42.7
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecc-----c-------ccccccceEECCCcEECC
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEG-----D-------FNAKLGITILGEAVGVED 354 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~-----~-------~~~~~~~sii~~~~~i~~ 354 (379)
++++.|.+++.+|+++.|++++.-.....+++||++|.|+++|.|.+.. + ..+.+++++|+++|.|+.
T Consensus 9 ~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~ 88 (153)
T cd04645 9 APNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGM 88 (153)
T ss_pred CCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECC
Confidence 3455555566666666666554300001123555555555555554310 0 112223366666666666
Q ss_pred CcEEe-ccEECCCceecccc
Q 016989 355 EVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 355 ~~~i~-~~ii~~~~~i~~~~ 373 (379)
++.|. +++|++++.|+.++
T Consensus 89 ~~~v~~~~~ig~~~~ig~~~ 108 (153)
T cd04645 89 GAIILDGAVIGKGSIVAAGS 108 (153)
T ss_pred CCEEcCCCEECCCCEECCCC
Confidence 66664 55555555555443
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-08 Score=85.86 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCCeEEecCeEECCCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEeeccc-----ccccccceEECCCcEE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGD-----FNAKLGITILGEAVGV 352 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~-----~~~~~~~sii~~~~~i 352 (379)
.+++++-.+++|++|+.++++.+ .++.|. +..+|..++||+||+|+.|.. +...-..++|+++|.|
T Consensus 112 ~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdncli 191 (271)
T COG2171 112 VPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLI 191 (271)
T ss_pred cCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEe
Confidence 47777777888888888887444 778887 888888888888888888764 3444455888888888
Q ss_pred CCCcE-EeccEECCCceecccc
Q 016989 353 EDEVV-VTNSIVLPNKTLNVSV 373 (379)
Q Consensus 353 ~~~~~-i~~~ii~~~~~i~~~~ 373 (379)
|.+++ +.++++|++|+|+.++
T Consensus 192 GAns~~veGV~vGdg~VV~aGv 213 (271)
T COG2171 192 GANSEVVEGVIVGDGCVVAAGV 213 (271)
T ss_pred ccccceEeeeEeCCCcEEecce
Confidence 88873 3566666666665554
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-07 Score=86.47 Aligned_cols=180 Identities=16% Similarity=0.265 Sum_probs=111.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc-------------------EEEEcccchHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-------------------IYLVGFYEERE 64 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~-------------------iiv~~~~~~~~ 64 (379)
-++.+|||||| .||||+. ..||+|+|| .|+|++++.++++.. +++++....+.
T Consensus 105 gkvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 105 GEVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred CCeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 35899999999 9999975 899999999 599999999998852 34455555567
Q ss_pred HHHHHHhhcccCCcc---EEEecCC----------------------CCCChHHHHHHH-----HHhhccCCCCeEEEEc
Q 016989 65 FALYVSSISNELRIP---VRYLRED----------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLN 114 (379)
Q Consensus 65 i~~~l~~~~~~~~~~---i~~~~~~----------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~~ 114 (379)
+++|+.+. ..+|++ |.+..|. .+.|.++..... ++.+....-+++.+..
T Consensus 180 t~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 258 (482)
T PTZ00339 180 TRQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVIS 258 (482)
T ss_pred HHHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEe
Confidence 88999763 334432 2221111 155776554432 3334333346899999
Q ss_pred CCeeec-CChHHHHHHHHhcCC-ceEEEEEEeCCCCCCceeEEEEeCCCCcEEEeeecCC-----------Ccccceeee
Q 016989 115 CDVCCS-FPLPEMLDAHRNYGG-MGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE-----------TFVSDLINC 181 (379)
Q Consensus 115 gD~i~~-~dl~~~l~~~~~~~~-~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~-----------~~~~~~~~~ 181 (379)
.|+++. ..=..++-.+...++ ++.-.+.+.. ..+.-|.+......-.|+.+.|=+. ...-...++
T Consensus 259 vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~--~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI 336 (482)
T PTZ00339 259 IDNILAKVLDPEFIGLASSFPAHDVLNKCVKRE--DDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNI 336 (482)
T ss_pred cCcccccccCHHHhHHHHHCCchhheeeeecCC--CCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccce
Confidence 999973 333445555666666 5433333332 2345576654321225666655221 111245688
Q ss_pred eEEEeCHhhHHHh
Q 016989 182 GVYVFTPDIFNAI 194 (379)
Q Consensus 182 Giy~~~~~~l~~l 194 (379)
..++|+-++++.+
T Consensus 337 ~~h~fsl~fl~~~ 349 (482)
T PTZ00339 337 CSHIFSLDFLKKV 349 (482)
T ss_pred EEEEEEHHHHHHH
Confidence 9999998888755
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.1e-08 Score=87.84 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe--------ccEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT--------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~--------~~ii~~~~~i~~~~~ 374 (379)
++|.|. +++||++|.|++++.|+.... +.+...+++||++|.|+++|.|. +++||+++.|++++.
T Consensus 39 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~ 115 (254)
T TIGR01852 39 SHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSH 115 (254)
T ss_pred CCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCE
Confidence 444555 777888888888888764211 01112348999999999999996 457778777766653
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.1e-08 Score=85.01 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=52.6
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECC--------CcEEeecccccccccceEECCCcEECCCc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGR--------WSRVQAEGDFNAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~--------~~~i~~~~~~~~~~~~sii~~~~~i~~~~ 356 (379)
+++.|.+++.||+++.|++++. .++.|. ++.||.+|.|.. ++.|+++ +.||.+++|.+++
T Consensus 109 ~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~---------v~IG~gsvI~~g~ 179 (231)
T TIGR03532 109 MGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN---------VLIGANAVILEGV 179 (231)
T ss_pred cCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC---------cEECCCCEEcCCC
Confidence 4445555566666666665555 456676 777777777753 4667666 7777777777777
Q ss_pred EE-eccEECCCceeccccc
Q 016989 357 VV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 357 ~i-~~~ii~~~~~i~~~~~ 374 (379)
.| .+|+|++++.|.+++.
T Consensus 180 ~Ig~~~~IgagsvV~~di~ 198 (231)
T TIGR03532 180 RVGKGAVVAAGAIVTEDVP 198 (231)
T ss_pred EECCCCEECCCCEEccccC
Confidence 77 3777777777777665
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-08 Score=95.67 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCeEEecCeEECCCcEECCCCC-------------CCcEEeceEECCCCEECCCcEEeec
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~ 334 (379)
+++.|.+++.||+++.|+++|+ .++.+.+++||++|.||++++|..+
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~ 338 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPG 338 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCC
Confidence 3444444444444444444443 4555666677777777777766665
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.9e-08 Score=83.17 Aligned_cols=77 Identities=14% Similarity=0.330 Sum_probs=38.9
Q ss_pred CCeEEecCeEECCCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
+++.+.+++.+++++.|+++|+ +++.|. +++|+++|.||++|+|+.+ ++|..++.||++|.|
T Consensus 89 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~---------~~i~~~~~ig~~~~i 159 (197)
T cd03360 89 PSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG---------VVLSGGVTIGEGAFI 159 (197)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCC---------CEEcCCcEECCCCEE
Confidence 4445555555555555554433 334443 4444444444444444443 555555666666655
Q ss_pred e-ccEECCCceecccc
Q 016989 359 T-NSIVLPNKTLNVSV 373 (379)
Q Consensus 359 ~-~~ii~~~~~i~~~~ 373 (379)
. +|+|.+++.|++++
T Consensus 160 g~~~~v~~~~~ig~~~ 175 (197)
T cd03360 160 GAGATIIQGVTIGAGA 175 (197)
T ss_pred CCCCEEcCCCEECCCC
Confidence 3 55666666666554
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-08 Score=87.18 Aligned_cols=66 Identities=38% Similarity=0.630 Sum_probs=57.4
Q ss_pred EEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 291 TIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
.|.++|+|++++.+++++ +|+ |.-||++++||+|++|.+ |||.++|.|.+|+.+-+||||=+|.|
T Consensus 284 ~IigdVyIhPsakvhptA----kiGPNVSIga~vrvg~GvRl~~----------sIIl~d~ei~enavVl~sIigw~s~i 349 (407)
T KOG1460|consen 284 EIIGDVYIHPSAKVHPTA----KIGPNVSIGANVRVGPGVRLRE----------SIILDDAEIEENAVVLHSIIGWKSSI 349 (407)
T ss_pred eEEeeeEEcCcceeCCcc----ccCCCceecCCceecCCceeee----------eeeccCcEeeccceEEeeeecccccc
Confidence 488899999999998665 577 777888888888888877 99999999999999999999999999
Q ss_pred c
Q 016989 370 N 370 (379)
Q Consensus 370 ~ 370 (379)
|
T Consensus 350 G 350 (407)
T KOG1460|consen 350 G 350 (407)
T ss_pred c
Confidence 8
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-08 Score=86.90 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=29.8
Q ss_pred CcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe
Q 016989 311 NAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 311 ~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++.|. ++.||++|.|++++.|+...- +.++...++||++|.|+++|.|.
T Consensus 41 ~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 41 HAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 34444 566666666666666653100 12233358899999999999986
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-05 Score=77.92 Aligned_cols=178 Identities=16% Similarity=0.230 Sum_probs=112.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee-CCcchhHHHHHhcCc----------EEE-EcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR----------IYL-VGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi-~g~pli~~~i~~l~~----------iiv-~~~~~~~~i~~~l~~~~~ 74 (379)
.++.+|.|||| .||||+- ..||.|+++ .|+++++..++++.. .++ .+...++...+|++.+.
T Consensus 78 ~k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~- 151 (469)
T PLN02474 78 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT- 151 (469)
T ss_pred hcEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-
Confidence 46789999999 9999998 889999999 478999998888864 344 44444455788887643
Q ss_pred cCCccEEEecC------------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee-cCChH
Q 016989 75 ELRIPVRYLRE------------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC-SFPLP 124 (379)
Q Consensus 75 ~~~~~i~~~~~------------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~-~~dl~ 124 (379)
.++..+.+..| ..+-|.++..... ++.+..+.-+++.+.+.|++. ..|.
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp- 230 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL- 230 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-
Confidence 23334332211 1234444433321 333433445689999999965 3343
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC--cEEEeeecCCC--------cccceeeeeEEEeCHhhHHHh
Q 016989 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN--ELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAI 194 (379)
Q Consensus 125 ~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--~v~~~~ekp~~--------~~~~~~~~Giy~~~~~~l~~l 194 (379)
.++..+..++++.++=+.+....+ ..-|.+... +| ++..+.+-|.. ..-.+.+++.++|+-++++.+
T Consensus 231 ~~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~--dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~ 307 (469)
T PLN02474 231 KILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISY--EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
T ss_pred HHHHHHHhcCCceEEEEeecCCCC-CCccEEEEE--CCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence 366667777888776655432211 222555543 34 46666665532 235678999999998777655
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=82.29 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCcEEeceEECCCCEECCCcEEeeccc--c--------------------cc------cccceEECCCcEECCCcEEe-c
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGD--F--------------------NA------KLGITILGEAVGVEDEVVVT-N 360 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~--~--------------------~~------~~~~sii~~~~~i~~~~~i~-~ 360 (379)
.++.+.+++||++|.|++++.|..+.- . .. ....++||++|.||.+|.|. +
T Consensus 47 ~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g 126 (204)
T TIGR03308 47 RDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG 126 (204)
T ss_pred CCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccccccccccccccccccCCCeEECCCCEECCCCEECCC
Confidence 566677788999999999998875310 0 00 11358888888888888884 7
Q ss_pred cEECCCceeccccc
Q 016989 361 SIVLPNKTLNVSVH 374 (379)
Q Consensus 361 ~ii~~~~~i~~~~~ 374 (379)
+.||++++|+.++.
T Consensus 127 v~Ig~~~~I~~gs~ 140 (204)
T TIGR03308 127 VTIGNGAVIAAGAV 140 (204)
T ss_pred CEECCCCEECCCCE
Confidence 78888887777653
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-08 Score=75.20 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=44.8
Q ss_pred CcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 311 NAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 311 ~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
++.|.+|+||++|.|+ ++.|.+ |+|+++|.|++++.|.+|+|++++.|++++.
T Consensus 7 ~~~i~~s~Ig~~~~I~-~~~I~~----------svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~ 59 (104)
T cd04651 7 RGEVKNSLVSEGCIIS-GGTVEN----------SVLFRGVRVGSGSVVEDSVIMPNVGIGRNAV 59 (104)
T ss_pred CCEEEeEEECCCCEEc-CeEEEe----------CEEeCCCEECCCCEEEEeEEcCCCEECCCCE
Confidence 3466788899999998 888877 8999999999999999999998888888765
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-08 Score=88.38 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeec
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~ 334 (379)
..++.|+++++|++++.|+++|+ |. +++||++|.||++|.|..+
T Consensus 115 ~~~~~ig~~~vI~~~v~IG~~~~----I~~~~vIg~~~~IG~~~~i~~~ 159 (338)
T COG1044 115 GKNVSIGPNVVIGAGVVIGENVV----IGAGAVIGENVKIGDGTVIHPN 159 (338)
T ss_pred CCCCccCCCeEECCCCEECCCcE----ECCCCEECCCcEECCCcEEcCC
Confidence 35555555555555555554443 32 4444444444444444443
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.5e-08 Score=95.82 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEEC
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVL 364 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~ 364 (379)
.++.+.+++||++|.||++++|.++ |+|+++|+|++++.+.+++|+
T Consensus 307 ~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~Ig~~~~i~~~~ig 352 (451)
T TIGR01173 307 AYSVLEGSEIGEGCDVGPFARLRPG---------SVLGAGVHIGNFVETKNARIG 352 (451)
T ss_pred eecEEecccccCCcEECCeeEECCC---------CEECCCcEEccceeecCcEEC
Confidence 4455666777777777777777655 444444444444444333333
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=78.85 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=22.7
Q ss_pred EEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCcee
Q 016989 313 VVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTL 369 (379)
Q Consensus 313 ~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i 369 (379)
.+.+++||++|.||.++.|.++ ++|+++|.|+.++.|. ++.|++++++
T Consensus 75 ~i~~~~Ig~~~~Ig~~~~I~~g---------~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 75 ILHGCTIGRNALVGMNAVVMDG---------AVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred EEECCEECCCCEECCCCEEeCC---------CEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 3344444444444444444444 5555555555555443 3444444443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=85.76 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=39.5
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~ 374 (379)
+++||++|.|+++|.|..+.... -..++||++|.|++++.| ++|+|++++.|+.++.
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~--~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~ 133 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASG--GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNAT 133 (254)
T ss_pred eEEECCCCEECCCCEECCcccCC--CCcEEECCCCEECCCCEEccCCEECCCCEECCCCE
Confidence 57888888888888887642210 013788888888777777 5777777777766553
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=79.62 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=54.7
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
.+..|.+++.||+++.++++ .++.|+ +++||++|.|++++.|+.... ......++||++|.||.+|.|. +++||+
T Consensus 60 ~~~~I~~~~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~~~~-~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~ 136 (162)
T TIGR01172 60 TGVDIHPGARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGK-EKGKRHPTVGEGVMIGAGAKVLGNIEVGE 136 (162)
T ss_pred eCeEeCCCCEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECCCcc-ccCCcCCEECCCcEEcCCCEEECCcEECC
Confidence 34666667777777777654 235666 688888888888888875321 1112336788888888888774 566666
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.|++++
T Consensus 137 ~~~Iga~s 144 (162)
T TIGR01172 137 NAKIGANS 144 (162)
T ss_pred CCEECCCC
Confidence 66666654
|
Cysteine biosynthesis |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=77.50 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=3.9
Q ss_pred ceEECCCCEE
Q 016989 316 NAIVGWKSSI 325 (379)
Q Consensus 316 ~s~ig~~~~i 325 (379)
++.|+++|.|
T Consensus 55 ~~~I~~~~~i 64 (139)
T cd03350 55 NVHLSAGAVI 64 (139)
T ss_pred CCEECCCCEE
Confidence 3444433333
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-07 Score=67.39 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=52.1
Q ss_pred EECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 297 YVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.|++++.|++++ .|. +++||++|.|++++.|.+..... ...+..|+++|.|+.++.+. ++.|++++.|++++
T Consensus 2 ~ig~~~~i~~~~----~i~~~~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s 75 (78)
T cd00208 2 FIGEGVKIHPKA----VIRGPVVIGDNVNIGPGAVIGAATGPN-EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGA 75 (78)
T ss_pred EECCCeEECCCC----EEeCcEEECCCCEECCCCEEEeccCCC-ccCCcEECCCcEECCCCEEeCCCEECCCCEECcCc
Confidence 455666666443 355 58899999999999998742110 12338899999999999884 78999999998765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=84.28 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=9.1
Q ss_pred eEECCCCEECCCcEEeec
Q 016989 317 AIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~ 334 (379)
++||++|.||++|.|.++
T Consensus 174 ViIgDnv~IGa~a~I~~G 191 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEG 191 (269)
T ss_pred eEECCCCEECCCCEEcCC
Confidence 455555555555555444
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=81.18 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=46.7
Q ss_pred CeEECCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 295 DVYVHPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
++.||+++.|+++|+ ..+...+|+||++|.||+++.|.+ |+|+++|.||.++.|. +++|++++.|+.+
T Consensus 47 ~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~----------siIg~~~~IG~ga~I~~g~~IG~~s~Vgag 116 (192)
T TIGR02287 47 RIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG----------CIVGRNALVGMNAVVMDGAVIGENSIVAAS 116 (192)
T ss_pred ceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC----------CEECCCCEECCCcccCCCeEECCCCEEcCC
Confidence 345566666665543 111124688888888888888877 8888888888877774 5677777776665
Q ss_pred c
Q 016989 373 V 373 (379)
Q Consensus 373 ~ 373 (379)
+
T Consensus 117 s 117 (192)
T TIGR02287 117 A 117 (192)
T ss_pred C
Confidence 4
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=89.38 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=30.0
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe--------------------ccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT--------------------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~--------------------~~ii~~~~~i~~~~~ 374 (379)
++.||++|.|++++.|.++ +.||++|.|+++|.|. +++|++++.||+++.
T Consensus 148 ~~~IG~~~~I~~~~~I~~~---------~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~ 217 (343)
T PRK00892 148 GVKIGADCRLHANVTIYHA---------VRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTT 217 (343)
T ss_pred CcEECCCCEeCCCeEEcCC---------CEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcE
Confidence 4444444444444444443 5577777777777773 467777777777653
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=94.27 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=42.9
Q ss_pred EecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceec
Q 016989 292 IIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 292 i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~ 370 (379)
+.+++.||+++.|+++| .|. +++||++|.|+++|.|++ |+||++|.|+++++|.+++||+++.|+
T Consensus 267 i~~~~~Ig~~~~I~~~~----~I~~~v~Ig~~~~I~~~~~i~~----------svI~~~~~I~~~~~i~~~~ig~~~~ig 332 (481)
T PRK14358 267 IEDTVTLGRDVTIEPGV----LLRGQTRVADGVTIGAYSVVTD----------SVLHEGAVIKPHSVLEGAEVGAGSDVG 332 (481)
T ss_pred ccCCcEECCCCEEeCCc----EEeCCcEECCCCEECCCCEEee----------eEECCCCEEeecceecCCeEeCceEEC
Confidence 35566666666666544 344 556666666666666655 666677666666666666666666666
Q ss_pred ccc
Q 016989 371 VSV 373 (379)
Q Consensus 371 ~~~ 373 (379)
+++
T Consensus 333 ~~~ 335 (481)
T PRK14358 333 PFA 335 (481)
T ss_pred Ccc
Confidence 654
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=84.47 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=50.8
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~ 365 (379)
.++.|++.+.||+++.+++++ +.+|+ +++||++|.|..++.|++... ......++||++|.||.||.| .++.||+
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~--givIG~~a~IGdnv~I~~~VtiGg~~~-~~~~~~p~IGd~V~IGaga~Ilggv~IG~ 216 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHAT--GIVIGETAVIENDVSILQSVTLGGTGK-TSGDRHPKIREGVMIGAGAKILGNIEVGR 216 (273)
T ss_pred eeeEecCcceECCCeEEcCCC--CeEECCCCEECCCCEEcCCcEEecCcc-cCCCcCCEECCCcEEcCCCEEcCCCEECC
Confidence 566777777788888777653 34666 677777777777777765211 111123566666666666666 3555555
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
+++||.++
T Consensus 217 ~a~IGAgS 224 (273)
T PRK11132 217 GAKIGAGS 224 (273)
T ss_pred CCEECCCC
Confidence 55555543
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.8e-08 Score=94.18 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCcEEeceEECCCCEECCCcEEeeccc--------ccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++|.|.+++||++|.||++++|.++.+ ..+++++|+|++++.+++++.+.+|+||+++.|+.++
T Consensus 315 ~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~ 386 (456)
T PRK14356 315 SFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGT 386 (456)
T ss_pred eeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCc
Confidence 445566777777777777777765411 1233344555555555555555555555555555553
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=83.97 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCeEEecCeEECCCcEECCCCC---------CCcE---Ee-ceEECCCCEECCCcEEeecccccccccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK---------ENAV---VT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~---------~~~~---i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~ 354 (379)
.+++|..++.+|+|+.|+++++ ..++ |. .++||++|.||.+|+|.. ......-..+.||++|.||.
T Consensus 183 ~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~-tLsGg~~~~V~IGe~~lIGa 261 (341)
T TIGR03536 183 DTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMG-TLSGGGNIVISVGEGCLLGA 261 (341)
T ss_pred CCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeE-EEeCCCceeEEECCCcEECC
Confidence 4444445555555555555443 2223 44 888999999999999933 33333233388888899999
Q ss_pred CcEEeccEECCCceecccc
Q 016989 355 EVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 355 ~~~i~~~ii~~~~~i~~~~ 373 (379)
||.| +..||++|+||.+.
T Consensus 262 gA~I-GI~IGd~~iIGAGa 279 (341)
T TIGR03536 262 NAGI-GIPLGDRCTVEAGL 279 (341)
T ss_pred CCEE-eeEECCCCEECCCC
Confidence 8888 77777777777665
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=84.23 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=49.3
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCC
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPN 366 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~ 366 (379)
+..|++.+.||+++.|.+++ +++|+ +++||++|.|..++.+++.. ..+..++++||++|.||.||.| .++.||++
T Consensus 160 gvdI~p~A~IG~gv~Idh~t--GVVIGe~a~IGdnv~I~~~VtLGg~g-~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHAT--GVVIGETAVIGNNVSILHHVTLGGTG-KACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eEEeCCcceecCCEEEeCCC--CeEECCCcEECCCCEEeecceeCCcc-cccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 44566666666666666542 34555 56666666666666665421 1222345777777777777777 46666666
Q ss_pred ceecccc
Q 016989 367 KTLNVSV 373 (379)
Q Consensus 367 ~~i~~~~ 373 (379)
++|+.++
T Consensus 237 a~IGAgS 243 (294)
T PLN02694 237 AKIGAGS 243 (294)
T ss_pred CEECCCC
Confidence 6666554
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=83.80 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=24.6
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 371 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~ 371 (379)
..||++|.|++++.|..+.... ..+.||++|.+..+++| ++|+||+++.|+.
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g---~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~ 130 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGG---GVTRIGNDNLLMAYSHVAHDCQIGNNVILVN 130 (255)
T ss_pred eEECCceEECCccEEecCcccC---CcEEEcccceeccCcEECCCCEECCCcEECC
Confidence 5566777777777666542100 11444444444444444 2444444444443
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=82.03 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=76.8
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.|||+|.| ||.--| -|.|.+++|+|||+|+++.+.+ |+|.+...+ +.+.+.. +|..+...
T Consensus 1 iaiIpAR~---gS~rlp-----~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~--i~~~~~~----~g~~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARG---GSKRLP-----GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEE--IDDIAEE----YGAKVIFR 66 (217)
T ss_dssp EEEEEE-S---SSSSST-----TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHH--HHHHHHH----TTSEEEE-
T ss_pred CEEEecCC---CCCCCC-----cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHH--HHHHHHH----cCCeeEEc
Confidence 38999988 555556 6999999999999999999986 777666433 5555543 45667665
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGM 136 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~ 136 (379)
+.....++. ....+......+..+.++.+.||.|+ +..+..+++.+.+..++
T Consensus 67 ~~~~~~~~~-r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 67 RGSLADDTD-RFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp -TTSSSHHH-HHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ChhhcCCcc-cHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 544444444 34444443332233479999999999 56789999988887765
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=69.91 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCC
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPN 366 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~ 366 (379)
+..|++++.|+++++++++. .+.|+ ++.||++|.|+.++.|.+.... .....++|+++|.|+.++.+. ++.|+++
T Consensus 2 ~~~i~~~~~ig~~~~i~~~~--~~~ig~~~~Ig~~~~i~~~~~i~~~~~~-~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 2 GIDIHPGAKIGPGLFIDHGT--GIVIGETAVIGDNCTIYQGVTLGGKGKG-GGKRHPTIGDNVVIGAGAKILGNITIGDN 78 (101)
T ss_pred ceEeCCCCEECCCEEECCCC--eEEECCCCEECCCCEEcCCCEECCCccC-CcCCCCEECCCcEEcCCCEEECcCEECCC
Confidence 34566777777777776542 23455 4666666666666666554110 123447888888888888885 4777777
Q ss_pred ceeccccc
Q 016989 367 KTLNVSVH 374 (379)
Q Consensus 367 ~~i~~~~~ 374 (379)
+.|++++.
T Consensus 79 ~~i~~~~~ 86 (101)
T cd03354 79 VKIGANAV 86 (101)
T ss_pred CEECCCCE
Confidence 77777653
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=92.89 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=45.0
Q ss_pred CeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 289 NATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
++.|++++.|+.++.|+++|. ++|.|.+|+||++|.|+++|.|.+ |+|+++|+|++++.|. ++.|++
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~i~~~~~i~~ 340 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVED----------ANLGAACTIGPFARLRPGAELAE 340 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeC----------CccCCCcEecCceEEeCCCEECC
Confidence 344445555555555555555 666666777777777777776655 6666666666666664 555555
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.||+++
T Consensus 341 ~~~ig~~~ 348 (456)
T PRK09451 341 GAHVGNFV 348 (456)
T ss_pred Cceeccce
Confidence 55555543
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-07 Score=75.79 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=11.2
Q ss_pred eEECCCcEECCCcEEe-ccEECCCce
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKT 368 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~ 368 (379)
++|++++.|+.++.+. +..+++++.
T Consensus 97 ~~Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 97 AKIGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred CEECCCCEECCCCEECCCcEeCCCCE
Confidence 4445555554444443 234444444
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.4e-07 Score=80.26 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=20.3
Q ss_pred ceEECCCcEECCCcEEec-----cEECCCceecccc
Q 016989 343 ITILGEAVGVEDEVVVTN-----SIVLPNKTLNVSV 373 (379)
Q Consensus 343 ~sii~~~~~i~~~~~i~~-----~ii~~~~~i~~~~ 373 (379)
.++|++++.|+.++.+.. +.|++++.|++++
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v 127 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLV 127 (205)
T ss_pred eEEECCCEEECCCCEEeccccCCeEECCCCEECCce
Confidence 477888888888887763 4555555555543
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-07 Score=83.26 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=29.7
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
.+++||++|.||++|.|.+ |+|+++|.||.+|.|. ++.|++++.|+.+
T Consensus 118 ~~siIG~~v~IG~~avI~g----------~~Igd~v~IG~ga~I~~gv~Ig~~a~Igag 166 (269)
T PLN02296 118 LPTIIGDNVTIGHSAVLHG----------CTVEDEAFVGMGATLLDGVVVEKHAMVAAG 166 (269)
T ss_pred CCcEeCCCCEECCCceecC----------CEECCCcEECCCcEECCCeEECCCCEECCC
Confidence 3678888888888887765 6666666666555552 4444444444443
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=73.05 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=20.2
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
.+++||++|.||+++.+.++ ++|++++.|+.++.+..+
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~---------~~ig~~~~i~~~~~v~~~ 103 (119)
T cd03358 66 KGTTVKRGASIGANATILPG---------VTIGEYALVGAGAVVTKD 103 (119)
T ss_pred CCcEECCCcEECcCCEEeCC---------cEECCCCEEccCCEEeCc
Confidence 34555555555555555444 555555555555555443
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-07 Score=79.05 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=5.5
Q ss_pred EEecCeEECCCcEEC
Q 016989 291 TIIGDVYVHPSAKIH 305 (379)
Q Consensus 291 ~i~~~~~i~~~~~i~ 305 (379)
.+.+++.||+++.|+
T Consensus 95 ~i~~~~~ig~~~~i~ 109 (201)
T TIGR03570 95 IVSPSASIGEGTVIM 109 (201)
T ss_pred EECCCCEECCCCEEC
Confidence 333333333333333
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=76.91 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=20.6
Q ss_pred ccccceEECCCcEECCCcEEeccEECCCceeccc
Q 016989 339 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 372 (379)
Q Consensus 339 ~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~ 372 (379)
+.+.++.||++|.||.++.|.++.|++++.|+++
T Consensus 95 ~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~ 128 (167)
T cd00710 95 SVVFNAKVGDNCVIGHNAVVDGVEIPPGRYVPAG 128 (167)
T ss_pred CEEECCEECCCCEEcCCCEEeCCEeCCCCEECCC
Confidence 3344466666666666666666666666666554
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.6e-07 Score=78.35 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=44.0
Q ss_pred EECCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 297 YVHPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 297 ~i~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.|++++.|+++|+ ......+++|+++|.||+++.+.+ ++|+++|.||.++.|. +++|++++.|+.++
T Consensus 51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g----------~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags 119 (196)
T PRK13627 51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG----------CVIGRDALVGMNSVIMDGAVIGEESIVAAMS 119 (196)
T ss_pred EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee----------EEECCCCEECcCCccCCCcEECCCCEEcCCC
Confidence 3444555554443 111112578888888888888876 8888888888888773 56677777766655
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=89.01 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=53.1
Q ss_pred EECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec-----cEECCCceecc
Q 016989 297 YVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-----SIVLPNKTLNV 371 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~-----~ii~~~~~i~~ 371 (379)
+|+++++|+ ++|.|.+|+|+++|.||++|+|.+ |+|+++|.|++++.+.+ .+||+++.|++
T Consensus 310 ~ig~~~~I~----~~~~i~~svi~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~ 375 (380)
T PRK05293 310 VLFQGVQVG----EGSVVKDSVIMPGAKIGENVVIER----------AIIGENAVIGDGVIIGGGKEVITVIGENEVIGV 375 (380)
T ss_pred EEcCCCEEC----CCCEEECCEEeCCCEECCCeEEeE----------EEECCCCEECCCCEEcCCCceeEEEeCCCCCCC
Confidence 444444444 556799999999999999999988 99999999999999976 89999999988
Q ss_pred c
Q 016989 372 S 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 376 ~ 376 (380)
T PRK05293 376 G 376 (380)
T ss_pred C
Confidence 7
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=90.51 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=13.5
Q ss_pred CCcEEe-ceEECCCCEECCCcEEee
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~ 333 (379)
+++.|. +|+||++|.||++|.|.+
T Consensus 314 ~~~~i~~~~~ig~~~~Ig~~~~i~~ 338 (446)
T PRK14353 314 PYARLRPGAELGEGAKVGNFVEVKN 338 (446)
T ss_pred CCeEEeccceecCCeEEcCceEEec
Confidence 334444 566666666666665543
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.8e-07 Score=83.99 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=45.5
Q ss_pred eEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCc
Q 016989 290 ATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNK 367 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~ 367 (379)
..|++++.||+|+.+.++. +++|+ +++||++|.|+.++.|++.... ....+++||++|.||.||.| .+..||+++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~--giVIGe~avIGdnV~I~~gVtIGg~g~~-~g~~~piIGd~V~IGagA~IlggV~IGdga 303 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHAT--GVVIGETAVVGNNVSILHNVTLGGTGKQ-SGDRHPKIGDGVLIGAGTCILGNITIGEGA 303 (360)
T ss_pred eeeCCCCEECCCeEECCCC--ceEECCCCEECCCCEEeCCceecCcccc-CCccCceeCCCeEECCceEEECCeEECCCC
Confidence 4455555566666555431 23455 5666666666666666542111 11234677777777777666 356666666
Q ss_pred eecccc
Q 016989 368 TLNVSV 373 (379)
Q Consensus 368 ~i~~~~ 373 (379)
+||.++
T Consensus 304 ~IGAgS 309 (360)
T PLN02357 304 KIGAGS 309 (360)
T ss_pred EECCCC
Confidence 666654
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.7e-07 Score=73.60 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=23.9
Q ss_pred cEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCcee
Q 016989 312 AVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTL 369 (379)
Q Consensus 312 ~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i 369 (379)
+.+.+++||++|.|++++.|..+ ++|+++|.|+.++.|. +..+++++.+
T Consensus 73 ~~i~~~~Ig~~~~Ig~~~~v~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~~ 122 (153)
T cd04645 73 AVLHGCTIGDNCLIGMGAIILDG---------AVIGKGSIVAAGSLVPPGKVIPPGSLV 122 (153)
T ss_pred cEEeeeEECCCCEECCCCEEcCC---------CEECCCCEECCCCEECCCCEeCCCCEE
Confidence 33444455555555555555433 5555555555555552 3344444444
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-07 Score=89.97 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCeEEecCeEECCCcEECCCCC-------CCcE-----EeceEECCCCEECCCcEEeeccc--------ccccccceEE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK-------ENAV-----VTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITIL 346 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~-------~~~~-----i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii 346 (379)
.+++.|.++++||+++.|+++|+ +++. +.+++|+++|.||+++.+..+.+ ..+++++|+|
T Consensus 281 ~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I 360 (482)
T PRK14352 281 HPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATI 360 (482)
T ss_pred eCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEE
Confidence 45666666677777777776655 2222 23566667777776666654432 1123344566
Q ss_pred CCCcEECCCcEEeccEECCCceecccc
Q 016989 347 GEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 347 ~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
+++++|++++.+.+|+||+++.||.++
T Consensus 361 ~~~~~i~~~~~i~~~~Ig~~~~IG~~~ 387 (482)
T PRK14352 361 GRGTKVPHLTYVGDADIGEHSNIGASS 387 (482)
T ss_pred CCCcEEccCceecccEECCCcEECCCc
Confidence 666666655555556666666666553
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.3e-07 Score=74.32 Aligned_cols=18 Identities=28% Similarity=0.119 Sum_probs=10.5
Q ss_pred ceEECCCCEECCCcEEee
Q 016989 316 NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~ 333 (379)
+++||++|.|++++.+.+
T Consensus 72 ~v~Ig~~~~Ig~~~~i~~ 89 (161)
T cd03359 72 PLHIGDYVFIGENCVVNA 89 (161)
T ss_pred CeEECCccEECCCCEEEe
Confidence 345666666666666554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-07 Score=75.27 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=7.9
Q ss_pred eEECCCCEECCCcEEe
Q 016989 317 AIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~ 332 (379)
+.||++|.|+++|.|.
T Consensus 43 v~IG~~~~I~~~~~I~ 58 (161)
T cd03359 43 VSIGRYCILSEGCVIR 58 (161)
T ss_pred eEECCCcEECCCCEEe
Confidence 3455555555555444
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.1e-07 Score=72.59 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=33.6
Q ss_pred cCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 294 GDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
+.+.+|+++.+++++ ++.|+ ++.||++|.|++++.|++.... ....++||++|.||.+|.+. ++.||+++.|+.
T Consensus 46 ~~a~Ig~~~~I~~g~--~i~I~~~~~IGd~~~I~h~v~IG~~~~~--~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Iga 121 (146)
T PRK10191 46 AAATIGRRFTIHHGY--AVVINKNVVAGDDFTIRHGVTIGNRGAD--NMACPHIGNGVELGANVIILGDITIGNNVTVGA 121 (146)
T ss_pred CCCEECCCeEECCCC--eEEECCCcEECCCCEECCCCEECCCCcC--CCCCCEECCCcEEcCCCEEeCCCEECCCCEECC
Confidence 333444444444431 23444 5555666666666655532110 00113555555555555553 344444444444
Q ss_pred c
Q 016989 372 S 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 122 g 122 (146)
T PRK10191 122 G 122 (146)
T ss_pred C
Confidence 3
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.1e-07 Score=83.12 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=37.2
Q ss_pred eEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCc
Q 016989 290 ATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNK 367 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~ 367 (379)
..|.+.+.||+++.|.+++ +++|+ +++||++|.|..++.|++..... .-...+||++|.||.||.| .++.||+++
T Consensus 206 idI~p~A~IG~Gv~IdHg~--GVVIG~~avIGdnv~I~~gVTIGg~g~~~-g~r~p~IGd~V~IGagA~IlG~V~IGd~a 282 (355)
T PLN02739 206 IDIHPAARIGKGILLDHGT--GVVIGETAVIGDRVSILHGVTLGGTGKET-GDRHPKIGDGALLGACVTILGNISIGAGA 282 (355)
T ss_pred cccCCCccccCceEEecCC--ceEECCCCEECCCCEEcCCceeCCcCCcC-CCCCcEECCCCEEcCCCEEeCCeEECCCC
Confidence 3444445555555554431 23444 55566666666666554321100 0012455555555555555 244444444
Q ss_pred eeccc
Q 016989 368 TLNVS 372 (379)
Q Consensus 368 ~i~~~ 372 (379)
+||.+
T Consensus 283 iIGAG 287 (355)
T PLN02739 283 MVAAG 287 (355)
T ss_pred EECCC
Confidence 44443
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8e-07 Score=87.80 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=8.2
Q ss_pred eEECCCCEECCCcEEee
Q 016989 317 AIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~ 333 (379)
|+||++|.||++|.|..
T Consensus 317 ~~ig~~~~Ig~~~~i~~ 333 (458)
T PRK14354 317 SKVGDNVTVGPFAHLRP 333 (458)
T ss_pred CEECCCcEECCceEecC
Confidence 44445555555554443
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.6e-07 Score=77.33 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=33.8
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++++.+. ++.||++++|+++| .|.+++||++|.|++++.|.+ ++||++|.|++++.|.
T Consensus 12 ~~~a~i~-~~~IG~~~~Ig~~a----~I~~s~IG~~s~I~~~~~i~~----------~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 12 HPTAELT-ESKLGRYTEIGERT----RLREVALGDYSYVMRDCDIIY----------TTIGKFCSIAAMVRIN 69 (204)
T ss_pred CCCcEEe-ccEeCCCcEECCCc----EEeCCEECCCCEECCCcEEee----------eEECCCCEECCCCEEC
Confidence 3445553 35555555555433 455666666666666666655 6666666666666654
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=67.15 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=27.5
Q ss_pred ceEECCCCEECCCcEEeeccc---c-------cccccceEECCCcEECCCcEE-eccEECCCceeccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGD---F-------NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~---~-------~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
++.||++|.|+++|.|.++.. . ......++||++|.|+.++.+ .+++|++++.|+.+
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~ 88 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAG 88 (109)
T ss_pred ceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 355555555555555544310 0 112233555555555555555 35555555555444
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=73.06 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=33.3
Q ss_pred CcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 311 NAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 311 ~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
++.+.+++||++|.||++|.|.++ +.|+++|.||.++.|. +..|.+++++..
T Consensus 78 ~~~i~~~~IGd~~~Ig~~a~I~~g---------v~Ig~~~~IgagsvV~~~~~i~~~~vi~g 130 (164)
T cd04646 78 GCKCEALKIGNNNVFESKSFVGKN---------VIITDGCIIGAGCKLPSSEILPENTVIYG 130 (164)
T ss_pred CcEEEeeEECCCCEEeCCCEECCC---------CEECCCCEEeCCeEECCCcEECCCeEEeC
Confidence 345556677777777777776665 6677777777766663 456666666554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.4e-07 Score=79.74 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=33.6
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+.+||++|.||++|.|.++ +.||++|+||.|+.|... |.+++++
T Consensus 193 ~p~IGd~V~IGaga~Ilgg---------v~IG~~a~IGAgSvV~~d-Vp~~~~v 236 (273)
T PRK11132 193 HPKIREGVMIGAGAKILGN---------IEVGRGAKIGAGSVVLQP-VPPHTTA 236 (273)
T ss_pred CCEECCCcEEcCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEE
Confidence 4688888888888888887 888888888888888654 5555555
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.6e-07 Score=87.72 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=35.7
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcE-----EeceEECCCCEECCCcEEeecccccccccceEECCCcEECCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAV-----VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 355 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~-----i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~ 355 (379)
+++.|.+++.||+++.|++++. ++|. +.+|+||++|.||++|+|.++ ++||++|.|+++
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~---------~~Ig~~~~Ig~~ 343 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPE---------AQIGSNCRIGNF 343 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCC---------CEEeCceEECCC
Confidence 3444444555555555554433 1222 234555666666666666544 555555555555
Q ss_pred cEEeccEECCCc
Q 016989 356 VVVTNSIVLPNK 367 (379)
Q Consensus 356 ~~i~~~ii~~~~ 367 (379)
+.|.+++|++++
T Consensus 344 ~~i~~~~i~~~~ 355 (450)
T PRK14360 344 VEIKKSQLGEGS 355 (450)
T ss_pred EEEeccccCCCc
Confidence 555444444433
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=71.03 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=31.2
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++||++|.||+++.|.++ +.||++|.|+.++.|.+.+-.....+|...
T Consensus 93 ~~IGd~~~Ig~~~~I~~~---------v~IG~~~~Igags~V~~dv~~~~~v~G~pA 140 (146)
T PRK10191 93 PHIGNGVELGANVIILGD---------ITIGNNVTVGAGSVVLDSVPDNALVVGEKA 140 (146)
T ss_pred CEECCCcEEcCCCEEeCC---------CEECCCCEECCCCEECCccCCCcEEEccCc
Confidence 466677777777666665 777777777777777666555555555444
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=78.60 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=42.4
Q ss_pred CCeEEecCeEECCCcEECCCCC-CCc----EEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-cc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-ENA----VVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NS 361 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-~~~----~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ 361 (379)
.++.|+..+.||++++|++++. .+. ...+++||++|.||.+|.|..+ ++||++|+|+.++.|. ++
T Consensus 143 ~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G---------v~IGdgavIgag~vV~~gt 213 (272)
T PRK11830 143 TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG---------VIVEEGSVLGMGVFLGQST 213 (272)
T ss_pred cccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC---------CEECCCCEEcCCCEEcCCe
Confidence 3345555555555555555543 110 1125778888888888777666 7777777777777774 66
Q ss_pred EECC
Q 016989 362 IVLP 365 (379)
Q Consensus 362 ii~~ 365 (379)
.|++
T Consensus 214 ~I~~ 217 (272)
T PRK11830 214 KIYD 217 (272)
T ss_pred EECc
Confidence 6664
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=72.88 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=24.0
Q ss_pred CeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 295 DVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++.||+++.|+++| .|..|.||++|.||.++.|-++ +.||++|.||.|+.|.
T Consensus 72 p~~IG~~vtIGH~a----ivHGc~Ig~~~lIGmgA~vldg---------a~IG~~~iVgAgalV~ 123 (176)
T COG0663 72 PVTIGDDVTIGHGA----VVHGCTIGDNVLIGMGATVLDG---------AVIGDGSIVGAGALVT 123 (176)
T ss_pred CeEECCCcEEcCcc----EEEEeEECCCcEEecCceEeCC---------cEECCCcEEccCCccc
Confidence 33444444444322 3444445555555554444444 4444444444444444
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-05 Score=71.88 Aligned_cols=177 Identities=15% Similarity=0.235 Sum_probs=110.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc----------EEE-EcccchHHHHHHHHhhccc
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYL-VGFYEEREFALYVSSISNE 75 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~----------iiv-~~~~~~~~i~~~l~~~~~~ 75 (379)
++.+|+|||| .||||+- ..||.|+||. |+++++..++++.. .+| ++...++...+|+.++..
T Consensus 3 kvavl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~- 76 (300)
T cd00897 3 KLVVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG- 76 (300)
T ss_pred cEEEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-
Confidence 5789999999 9999977 8899999995 88999999999864 344 444444568888876432
Q ss_pred CCccEEEecC------------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee-cCChHH
Q 016989 76 LRIPVRYLRE------------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC-SFPLPE 125 (379)
Q Consensus 76 ~~~~i~~~~~------------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~-~~dl~~ 125 (379)
.+..+.+..| ..+.|.++..... ++.+....-+++.+.+.|++. ..| ..
T Consensus 77 ~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~D-p~ 155 (300)
T cd00897 77 VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVD-LR 155 (300)
T ss_pred CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCC-HH
Confidence 1111211110 1244555443321 333333334689999999965 333 33
Q ss_pred HHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC--cEEEeeecCCCc--------ccceeeeeEEEeCHhhHHHh
Q 016989 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN--ELLHYTEKPETF--------VSDLINCGVYVFTPDIFNAI 194 (379)
Q Consensus 126 ~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l~~l 194 (379)
++-.|..+++++++=+.+... ..+.-|.+... +| +|..+.+-|... .-.+.+++.++|+-+.++.+
T Consensus 156 ~lg~~~~~~~~~~~evv~Kt~-~dek~G~l~~~--~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 156 ILNHMVDNKAEYIMEVTDKTR-ADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred HHHHHHhcCCceEEEEeecCC-CCCcccEEEEE--CCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 666677888887664444321 12344555543 34 466666655321 34578999999997776654
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=82.69 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=42.5
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~ 354 (379)
+++.|++++.|++++.|+++|. .++.|.+|+|.++|.||+++.|.+ |+|+++|+||+
T Consensus 266 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~----------sIi~~~~~ig~ 324 (358)
T COG1208 266 PGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD----------SIIGENCKIGA 324 (358)
T ss_pred CCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee----------eEEcCCcEECC
Confidence 4444444444444444444444 556899999999999999999999 99999999996
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.8e-07 Score=76.46 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=13.4
Q ss_pred cccccceEECCCcEECCCcEE
Q 016989 338 NAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 338 ~~~~~~sii~~~~~i~~~~~i 358 (379)
.++....+||++|.|-+++++
T Consensus 76 kge~T~l~IG~~n~IRE~vTi 96 (260)
T COG1043 76 KGEPTRLIIGDNNTIREFVTI 96 (260)
T ss_pred CCCceEEEECCCCeEeeEEEE
Confidence 445556777777766666655
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=72.92 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=54.7
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-------e
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------T 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-------~ 359 (379)
.+.-|+|.+.||++..|.++ .+.+|+ .++||++|.|-.++.|++..-..+ -.+-.||++|.||.||.| .
T Consensus 66 ~gieIhp~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~V~IGagAkILG~I~IGd 142 (194)
T COG1045 66 FGIEIHPGAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNGVYIGAGAKILGNIEIGD 142 (194)
T ss_pred cceeeCCCCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCCeEECCCCEEEcceEECC
Confidence 34556666666666666665 234666 888888888888888877543332 223577888888888866 3
Q ss_pred ccEECCCceeccccc
Q 016989 360 NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ~~ii~~~~~i~~~~~ 374 (379)
|+.||++|+|-++++
T Consensus 143 ~akIGA~sVVlkdVP 157 (194)
T COG1045 143 NAKIGAGSVVLKDVP 157 (194)
T ss_pred CCEECCCceEccCCC
Confidence 555555555555554
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.9e-06 Score=66.14 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=28.1
Q ss_pred ceEECCCCEECCCcEEeeccc------ccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGD------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
...||++|.|++++.|..+.- +........|+++|.|+.++.|. ++.|++++.|+.++
T Consensus 23 ~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs 87 (107)
T cd05825 23 PVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARS 87 (107)
T ss_pred ceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 456666666666666643110 00111235555555555555553 44555555544443
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=62.33 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=16.8
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
..||++|.|+.++.|..+ +.|++++.|+.++.|
T Consensus 45 ~~ig~~~~v~~~~~i~~~---------~~ig~~~~i~~~s~v 77 (78)
T cd00208 45 TIIGDNVEIGANAVIHGG---------VKIGDNAVIGAGAVV 77 (78)
T ss_pred cEECCCcEECCCCEEeCC---------CEECCCCEECcCcEe
Confidence 455555555555555444 555555555554443
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-06 Score=72.84 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=41.7
Q ss_pred cCeEECCCcEECCCCCCCcEE---eceEECCCCEECCCcEEeecc--cc-----cc--cccceEECCCcEECCCcEEe--
Q 016989 294 GDVYVHPSAKIHPTAKENAVV---TNAIVGWKSSIGRWSRVQAEG--DF-----NA--KLGITILGEAVGVEDEVVVT-- 359 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i---~~s~ig~~~~ig~~~~i~~~~--~~-----~~--~~~~sii~~~~~i~~~~~i~-- 359 (379)
.++.||+++.|+.+| +| .+..||++|.||++|.|.... +. .. .....+||++|.||.+|.|.
T Consensus 74 ~ni~IG~~v~In~~~----~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g 149 (203)
T PRK09527 74 SNIHIGRNFYANFNL----TIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG 149 (203)
T ss_pred CCcEEcCCcEECCCc----EEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCC
Confidence 345555555555443 44 257899999999999887421 00 00 01125556665555555552
Q ss_pred -----ccEECCCceeccccc
Q 016989 360 -----NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 -----~~ii~~~~~i~~~~~ 374 (379)
+|+|+++++|..+++
T Consensus 150 v~IG~~~vIgagsvV~kdvp 169 (203)
T PRK09527 150 VTIGDNSVIGAGSVVTKDIP 169 (203)
T ss_pred CEECCCCEECCCCEEcccCC
Confidence 455555555555444
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-06 Score=81.63 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=56.3
Q ss_pred ecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceec
Q 016989 293 IGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~ 370 (379)
.++..|.......|++. ..+.+.+|.|+.+|.|.- .|.+ |+|+.+++|+++|.|++|+|.+++.||
T Consensus 271 d~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~n----------SVL~~~v~I~~gs~i~~svim~~~~IG 338 (393)
T COG0448 271 DRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVEN----------SVLFRGVRIGKGSVIENSVIMPDVEIG 338 (393)
T ss_pred CCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe--EEEe----------eEEecCeEECCCCEEEeeEEeCCcEEC
Confidence 44445556666666665 566788999999999932 5555 999999999999999999999999999
Q ss_pred cccc
Q 016989 371 VSVH 374 (379)
Q Consensus 371 ~~~~ 374 (379)
+++.
T Consensus 339 ~~~~ 342 (393)
T COG0448 339 EGAV 342 (393)
T ss_pred CCCE
Confidence 9998
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=74.72 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=45.3
Q ss_pred CeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe------
Q 016989 289 NATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT------ 359 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~------ 359 (379)
++.|.+.++|++++.|+++++ +++.|. ++.||++|.|++++.|..+ ++|+++|.|++++.|.
T Consensus 7 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~i~~~~~~~ 77 (205)
T cd03352 7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEG---------CIIGDRVIIHSGAVIGSDGFGF 77 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC---------CEECCCcEECCCCEEcCCCcee
Confidence 344444444444444444433 334553 6666777777766666666 7777777777777662
Q ss_pred --------------ccEECCCceecccc
Q 016989 360 --------------NSIVLPNKTLNVSV 373 (379)
Q Consensus 360 --------------~~ii~~~~~i~~~~ 373 (379)
.++|++++.|++++
T Consensus 78 ~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 105 (205)
T cd03352 78 APDGGGWVKIPQLGGVIIGDDVEIGANT 105 (205)
T ss_pred EecCCcEEEcCCcceEEECCCEEECCCC
Confidence 46677777777655
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-06 Score=77.27 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=31.0
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
++++||++|.||++|.|.++ +.||++|+||.|+.|... |.+++++
T Consensus 211 r~piIGd~V~IGagA~Ilgg---------i~IGd~a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 211 RHPKIGDGVLIGAGATILGN---------VKIGEGAKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred CccEECCCeEECCeeEECCC---------CEECCCCEECCCCEECCc-CCCCcEE
Confidence 35677777777777777665 788888888888877543 4444443
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=85.69 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcE-----EeceEECCCCEECCCcEEeeccc--------ccccccceEEC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAV-----VTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITILG 347 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~-----i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii~ 347 (379)
+.+.|.+++.||+++.|+++|. ++|. +.+|+|+++|.||++++|+.+.+ ..+.+++|+|+
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 4444444555555555555443 2222 33556666666666666655411 12223334444
Q ss_pred CCcEECCCcEEeccEECCCceeccccc
Q 016989 348 EAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 348 ~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+++++++.+.+.+++||+++.||.++.
T Consensus 346 ~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 372 (448)
T PRK14357 346 ENTKAQHLTYLGDATVGKNVNIGAGTI 372 (448)
T ss_pred CCcCccccccccCcEECCCcEECCCcc
Confidence 444444444455666777777776653
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=81.91 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=20.7
Q ss_pred cceEECCCcEECCCcEEe---ccEECCCceec
Q 016989 342 GITILGEAVGVEDEVVVT---NSIVLPNKTLN 370 (379)
Q Consensus 342 ~~sii~~~~~i~~~~~i~---~~ii~~~~~i~ 370 (379)
++|+|+++|.|++++++. +.++|+++.|+
T Consensus 321 ~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 321 VDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred ecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 348888888888887774 35677777664
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-06 Score=83.94 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~ 365 (379)
++.++.+++.|+..+.++++|. +++.|++|+||++|.|+. +.|.+ |+||++|.|++++.|.+|+||+
T Consensus 252 ~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~----------~~ig~~~~i~~~~~i~~~~ig~ 320 (430)
T PRK14359 252 ETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIEN----------SDVGPLAHIRPKSEIKNTHIGN 320 (430)
T ss_pred CeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeC----------CEECCCCEECCCcEEeccEEcC
Confidence 4556677777777777777665 555555555555555544 33333 8888888888888888888888
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.|+..+
T Consensus 321 ~~~i~~~~ 328 (430)
T PRK14359 321 FVETKNAK 328 (430)
T ss_pred cEEEcccE
Confidence 88666644
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-06 Score=71.19 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=19.4
Q ss_pred CeEECCCcEECCCCCCCcEE--eceEECCCCEECCCcEEee
Q 016989 295 DVYVHPSAKIHPTAKENAVV--TNAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i--~~s~ig~~~~ig~~~~i~~ 333 (379)
++.||+++.|+++|. .. .+..||++|.|+++|.|..
T Consensus 62 ~i~IG~~v~I~~~~~---i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 62 NIHIGDNFYANFNCT---ILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred cCEECCCceEcCCEE---EeccCcEEECCCCEECCCCEEEe
Confidence 445555555554432 11 2456666666666666643
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7e-06 Score=70.25 Aligned_cols=76 Identities=9% Similarity=0.059 Sum_probs=38.5
Q ss_pred ecCeEECCCcEECCCCCCCcEEe-c--eEECCCCEECCCcEEeeccc-c-------ccc-ccceEECCCcEECCCcEEe-
Q 016989 293 IGDVYVHPSAKIHPTAKENAVVT-N--AIVGWKSSIGRWSRVQAEGD-F-------NAK-LGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~~~~~i~-~--s~ig~~~~ig~~~~i~~~~~-~-------~~~-~~~sii~~~~~i~~~~~i~- 359 (379)
+.++.||+++.+..+| .|. . ..||++|.|+++|.|....- . ... -.++.||++|.||.+|.|.
T Consensus 71 g~~i~iG~~~~in~~~----~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 71 GYNIFLGNNFYANFDC----VMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred cCCcEEcCCcEECCce----EEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECC
Confidence 3344445554444443 333 2 27888888888888753210 0 000 1235666666666666553
Q ss_pred ccEECCCceeccc
Q 016989 360 NSIVLPNKTLNVS 372 (379)
Q Consensus 360 ~~ii~~~~~i~~~ 372 (379)
++.||++++|+.+
T Consensus 147 gv~IG~~~vIgag 159 (183)
T PRK10092 147 GVTIGDNVVVASG 159 (183)
T ss_pred CCEECCCCEECCC
Confidence 4455554444443
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=71.93 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=46.3
Q ss_pred eEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccc------cccccceEECCCcEECCCcEE-eccEECCCce
Q 016989 296 VYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDF------NAKLGITILGEAVGVEDEVVV-TNSIVLPNKT 368 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~------~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~ 368 (379)
..||+++.|+++|.-. ....+.||++|.|++++.|..+.-. .......+||++|.||.+|.| .++.|++++.
T Consensus 72 ~~IG~~~~Ig~~~~I~-~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 72 LTIGDYAWIGDDVWLY-NLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred EEECCCeEECCCceec-ccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 5567777777665400 0126788888888888887543210 011133677777777777777 3666666666
Q ss_pred ecccc
Q 016989 369 LNVSV 373 (379)
Q Consensus 369 i~~~~ 373 (379)
|+.++
T Consensus 151 Iga~s 155 (182)
T PRK10502 151 VGARS 155 (182)
T ss_pred ECCCC
Confidence 66544
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.8e-06 Score=63.57 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=27.9
Q ss_pred eEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecc
Q 016989 296 VYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 371 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~ 371 (379)
+++++++.+++++. ....++||++|.||+++.|.+. +.||++|.|+. .|.+|+|++++.|+.
T Consensus 12 v~ig~~~~I~~~~~---i~g~v~IG~~~~Ig~~~~I~~~---------v~IG~~~~Ig~--~i~~svi~~~~~i~~ 73 (101)
T cd05635 12 IYIGKDAVIEPFAV---IEGPVYIGPGSRVKMGARIYGN---------TTIGPTCKIGG--EVEDSIIEGYSNKQH 73 (101)
T ss_pred EEECCCCEECCCCE---EeCCCEECCCCEECCCCEEeCc---------CEECCCCEECC--EECccEEcCCCEecC
Confidence 44444444443332 1124455555555555555444 55555555543 344444444444433
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.8e-06 Score=68.98 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=19.6
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+++||++|.||.+|.|.++ +.||++|.||.++.|...
T Consensus 118 ~v~IG~~~~Ig~~a~I~~g---------v~Ig~~~~VgagavV~~~ 154 (169)
T cd03357 118 PITIGDNVWIGGGVIILPG---------VTIGDNSVIGAGSVVTKD 154 (169)
T ss_pred CcEeCCCEEECCCCEEeCC---------CEECCCCEECCCCEEccc
Confidence 3455555555555555544 555555555555555443
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.6e-06 Score=70.00 Aligned_cols=111 Identities=22% Similarity=0.256 Sum_probs=72.3
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEccc--chHHHHHHHHhhcccCCccE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFY--EEREFALYVSSISNELRIPV 80 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~--~~~~i~~~l~~~~~~~~~~i 80 (379)
+.++|+.|- .||--.| -|.|+|++|+|||+++|+++.+ ++|.+.. .+..++.+..+ .|+.+
T Consensus 3 ~I~~IiQAR--mgStRLp-----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~----~G~~v 71 (241)
T COG1861 3 MILVIIQAR--MGSTRLP-----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS----HGFYV 71 (241)
T ss_pred cEEEEeeec--ccCccCC-----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH----cCeeE
Confidence 345555555 4555555 5999999999999999999986 6665543 22356666654 23322
Q ss_pred EEecCCCCCChHHHHH-HHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHHHHhcCCce
Q 016989 81 RYLREDKPHGSAGALY-NFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~-~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~~~~~~~~~ 137 (379)
..|+.+.++ .-...++.-..+.++=+.||.|+ + .-++.+++.|.+++++.
T Consensus 72 -------frGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 72 -------FRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred -------ecCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 234444443 33333333334578889999999 4 44688899999988764
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=73.86 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=55.9
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-----
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT----- 359 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~----- 359 (379)
++|++.|.|++.+++++.|+|.| .|+ +..||++|.|++++.|.+. +.||++++|-++|.|.
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~----iIg~~V~ig~~t~l~shvvv~G~---------T~IG~~n~I~~~A~iG~~pQd 72 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFC----IIGPNVEIGDGTVLKSHVVVEGH---------TTIGRNNRIFPFASIGEDPQD 72 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceE----EECCCcEECCCcEEcccEEEeCC---------eEECCCCEEecccccCCCCcc
Confidence 56788888888888888888654 566 7778888888888887776 7888887777777662
Q ss_pred --------ccEECCCceeccccc
Q 016989 360 --------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 --------~~ii~~~~~i~~~~~ 374 (379)
.-+||+++.|-+.|+
T Consensus 73 lKykge~T~l~IG~~n~IRE~vT 95 (260)
T COG1043 73 LKYKGEPTRLIIGDNNTIREFVT 95 (260)
T ss_pred cccCCCceEEEECCCCeEeeEEE
Confidence 236777777766654
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-06 Score=70.69 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=26.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+..||++|.||.+|.|..+ +.||++|.|+.++.|... +.+++++
T Consensus 129 ~v~IGd~v~IG~~a~I~~g---------v~IG~~~vIgagsvV~~d-i~~~~i~ 172 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVTKD-VPDNVVV 172 (183)
T ss_pred CeEECCCcEECCCCEECCC---------CEECCCCEECCCCEEccc-cCCCcEE
Confidence 4566666666666666655 666666666666666543 3444444
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=7e-06 Score=73.93 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=49.8
Q ss_pred CeEEecCeEECCCcEECCCC-C-CCcEEeceEECCCCEECCCcEEeecccc-----cccccceEECCCcEECCCcEEecc
Q 016989 289 NATIIGDVYVHPSAKIHPTA-K-ENAVVTNAIVGWKSSIGRWSRVQAEGDF-----NAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~-~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~-----~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+++++++++|.+++.|..+| . -.+.| ++.|+++|.||++|+|..+..- ...-..+.||++|.||.||.| +.
T Consensus 165 GAyLGeGtvVm~~a~VN~nAgtIG~~iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI 242 (319)
T TIGR03535 165 GAHLAEGTTVMHEGFVNFNAGTLGASMV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GI 242 (319)
T ss_pred ccEECCCCEEcCCCEEccCceEecCceE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-Ce
Confidence 44444444444444444444 1 11234 5777888888888888776431 111223778888888888887 66
Q ss_pred EECCCceecccc
Q 016989 362 IVLPNKTLNVSV 373 (379)
Q Consensus 362 ii~~~~~i~~~~ 373 (379)
.||++|+||.+.
T Consensus 243 ~IGd~~VVGAGa 254 (319)
T TIGR03535 243 SLGDDCVVEAGL 254 (319)
T ss_pred EECCCCEECCCC
Confidence 666666666654
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-06 Score=78.03 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=32.3
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccE
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI 362 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~i 362 (379)
+++||++|.||+++.|.++ +.||++++||.|+.|...+
T Consensus 278 ~piIGd~V~IGagA~Ilgg---------V~IGdga~IGAgSVV~~dV 315 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGN---------ITIGEGAKIGAGSVVLKDV 315 (360)
T ss_pred CceeCCCeEECCceEEECC---------eEECCCCEECCCCEECccc
Confidence 4789999999999888776 9999999999999986543
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.5e-06 Score=68.19 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=19.1
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++||++|.||++|.|.++ ++||++|.||.++.|.
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~---------v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGN---------IEVGENAKIGANSVVL 147 (162)
T ss_pred CEECCCcEEcCCCEEECC---------cEECCCCEECCCCEEC
Confidence 355555555555555554 5555555555555554
|
Cysteine biosynthesis |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=76.37 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=27.5
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
.+||++|.||+++.|.++ +.||++|+||.|+.|... |.+++++
T Consensus 258 p~IGd~V~IGagA~IlG~---------V~IGd~aiIGAGSVV~kD-VP~~stv 300 (355)
T PLN02739 258 PKIGDGALLGACVTILGN---------ISIGAGAMVAAGSLVLKD-VPSHSMV 300 (355)
T ss_pred cEECCCCEEcCCCEEeCC---------eEECCCCEECCCCEECCC-CCCCcEE
Confidence 567777777777777665 777777777777776432 4444433
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.8e-06 Score=70.95 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=35.9
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
..+||++|.||.++.|..+ +.||++|.|+.++.|... +.+++++
T Consensus 131 pi~IGd~v~IG~~~~I~~g---------v~IG~~~vIgagsvV~kd-vp~~~v~ 174 (203)
T PRK09527 131 PITIGNNVWIGSHVVINPG---------VTIGDNSVIGAGSVVTKD-IPPNVVA 174 (203)
T ss_pred CeEECCCcEECCCCEEcCC---------CEECCCCEECCCCEEccc-CCCCcEE
Confidence 4789999999999999888 999999999999998754 4555554
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=65.41 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=8.2
Q ss_pred CeEEecCeEECCCcEECCC
Q 016989 289 NATIIGDVYVHPSAKIHPT 307 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~ 307 (379)
++.+...+.||+++.|.++
T Consensus 7 ~~~V~~~a~IG~GtvI~~g 25 (147)
T cd04649 7 ADRVRLGAYLAEGTTVMHE 25 (147)
T ss_pred CCEECCCCEECCCcEECCC
Confidence 3344444444444444433
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.6e-06 Score=79.93 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=41.6
Q ss_pred cEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 302 AKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 302 ~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
+.|+++|. ++|.|++|+|+++|.||++|+|.+ |+|+++|+|+++++|.+
T Consensus 332 svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 332 SVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR----------AILDKNVVVPPGATIGV 382 (407)
T ss_pred CEECCCCEECCCCEEeeeEECCCCEECCCCEEEe----------eEECCCCEECCCCEECC
Confidence 44444444 667899999999999999999988 99999999999998866
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-06 Score=82.73 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=46.5
Q ss_pred cEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 312 AVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 312 ~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+.+.+|+||++|.| ++|.|.+ |+||++|.||++|.|++|+|++++.|++++.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~----------svi~~~~~I~~~~~i~~svi~~~~~I~~~~~ 374 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRR----------SVLFSRVRVNSFSNVEDSVLLPDVNVGRSCR 374 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccC----------CEECCCCEECCCCEEeeeEEcCCCEECCCCE
Confidence 35668999999999 7888876 9999999999999999999999999999876
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=61.76 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=33.0
Q ss_pred EeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 314 VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 314 i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
...++||++|.|++++.+..+ +.|+++|.|+.++.|.. -+.+++.+
T Consensus 56 ~~~~~Ig~~~~ig~~~~i~~~---------~~ig~~~~i~~~~~v~~-~i~~~~i~ 101 (109)
T cd04647 56 SAPIVIGDDVWIGANVVILPG---------VTIGDGAVVGAGSVVTK-DVPPNSIV 101 (109)
T ss_pred cCCeEECCCCEECCCCEEcCC---------CEECCCCEECCCCEEee-ECCCCCEE
Confidence 347778888888888777665 88888888888887773 35565555
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.3e-06 Score=77.98 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=45.3
Q ss_pred eEEecCeEECC----CcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 290 ATIIGDVYVHP----SAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 290 ~~i~~~~~i~~----~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
+.|++++.|++ ++.++++|. ++|.|.+|+|+++|.||++|+|.+ |+||++|+|+.++.|.|
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~----------~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN----------AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee----------eEECCCCEECCCCEeCC
Confidence 44455555544 445555555 567788999999999999999976 99999999999888764
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.1e-05 Score=74.89 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=55.7
Q ss_pred eEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC---------cEEEeeecCCC------
Q 016989 109 HIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN---------ELLHYTEKPET------ 173 (379)
Q Consensus 109 ~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~---------~v~~~~ekp~~------ 173 (379)
-++|..+|.++...-...++ +. +..++++..+.+..-++..|+...+. ++ .+.++..||..
T Consensus 55 Gv~V~s~D~vl~~~~~~~~~-~~--~~g~~~la~p~~~~~at~HGVfv~~~-~~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLID-WD--EPGVTALAHPSSLEYATNHGVFVLDR-QGPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccCC-CC--CCCEEEEEeeCCHHHhcCCeEEEeCC-CCCccccchhhhHHHhhcCCCHHHHHhC
Confidence 48999999555222112222 12 25577788887766788899999886 55 67778778742
Q ss_pred -----cccceeeeeEEEeCHhhHHHhhc
Q 016989 174 -----FVSDLINCGVYVFTPDIFNAIQG 196 (379)
Q Consensus 174 -----~~~~~~~~Giy~~~~~~l~~l~~ 196 (379)
...-..++|++.|+.+..+.|-.
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHHHH
Confidence 12445689999999887765543
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.1e-06 Score=78.28 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=50.2
Q ss_pred CeEEecCeEEC---CCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEE
Q 016989 289 NATIIGDVYVH---PSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIV 363 (379)
Q Consensus 289 ~~~i~~~~~i~---~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii 363 (379)
++.|++++.|+ +++.|+++|. ++|.|.+|+|+++|.|++++++.+ |+||++++|++++++.+..+
T Consensus 289 ~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~----------~ii~~~~~v~~~~~~~~~~~ 358 (369)
T TIGR02092 289 NSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN----------VIIDKDVVIEPNVKIAGTSE 358 (369)
T ss_pred EeEEcCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE----------EEECCCCEECCCCEeCCCCC
Confidence 34444444443 2234444444 677899999999999999999988 99999999999999977655
Q ss_pred CCC
Q 016989 364 LPN 366 (379)
Q Consensus 364 ~~~ 366 (379)
.|.
T Consensus 359 ~~~ 361 (369)
T TIGR02092 359 QPL 361 (369)
T ss_pred ccE
Confidence 553
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=67.39 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=8.4
Q ss_pred eEEecCeEECCCcEEC
Q 016989 290 ATIIGDVYVHPSAKIH 305 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~ 305 (379)
..|++++.|++++.+.
T Consensus 72 ~~IG~~~~Ig~~~~I~ 87 (182)
T PRK10502 72 LTIGDYAWIGDDVWLY 87 (182)
T ss_pred EEECCCeEECCCceec
Confidence 3445555555555554
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=66.44 Aligned_cols=78 Identities=8% Similarity=0.182 Sum_probs=42.4
Q ss_pred CeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeeccc--------c----------cccccceEECCCcEECCCc
Q 016989 295 DVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGD--------F----------NAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~----------~~~~~~sii~~~~~i~~~~ 356 (379)
.+.||+++.|++++.-. .-.++.||++|.|++++.|.+... + ......++||++|.||.+|
T Consensus 65 ~i~IG~~v~Ig~~v~I~-~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~ 143 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIA-CIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENV 143 (192)
T ss_pred eEEECCCCEECCCcEEc-cCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCC
Confidence 34555555555444300 012567777777777777765311 0 0112346677777777766
Q ss_pred EEe-ccEECCCceecccc
Q 016989 357 VVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~-~~ii~~~~~i~~~~ 373 (379)
.|. +++|++++.|++++
T Consensus 144 ~i~~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 144 TILPGVSIGNGCIVGANS 161 (192)
T ss_pred EEcCCCEECCCCEECCCC
Confidence 663 56666666665554
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.2e-06 Score=79.42 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=47.6
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECC-------------------Cceec
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLP-------------------NKTLN 370 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~-------------------~~~i~ 370 (379)
.++.+++|+||++|.| +++.|++ |+||++|.||++|.|.+|+|++ ++.||
T Consensus 302 ~~~~~~~~~ig~~~~i-~~~~i~~----------svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig 370 (429)
T PRK02862 302 LDATITESIIAEGCII-KNCSIHH----------SVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIG 370 (429)
T ss_pred cccEEEeCEECCCCEE-CCcEEEE----------EEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEEC
Confidence 3457788999999999 8899977 9999999999999999999976 68888
Q ss_pred cccc
Q 016989 371 VSVH 374 (379)
Q Consensus 371 ~~~~ 374 (379)
+++.
T Consensus 371 ~~~~ 374 (429)
T PRK02862 371 EGTT 374 (429)
T ss_pred CCCE
Confidence 8876
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.2e-05 Score=62.94 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=25.0
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|..+ +.||++|.||.++.|... +.+++++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~g---------v~Ig~~~vIgags~V~~~-v~~~~v~ 116 (145)
T cd03349 73 DVIIGNDVWIGHGATILPG---------VTIGDGAVIAAGAVVTKD-VPPYAIV 116 (145)
T ss_pred CcEECCCCEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCeEE
Confidence 5566666666666666555 666666666666665443 3444433
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-05 Score=59.08 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=24.3
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
..++||++|.|+.++.+..+ +.|+++|.|+.++.|.+
T Consensus 53 ~~~~Ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 53 RHPTIGDNVVIGAGAKILGN---------ITIGDNVKIGANAVVTK 89 (101)
T ss_pred CCCEECCCcEEcCCCEEECc---------CEECCCCEECCCCEECc
Confidence 45566666666666666665 66677777766666654
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-05 Score=67.29 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=36.3
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
.+++||++|.||.++.|.++ ++||++|.|+.++.|..+ +.+++.+
T Consensus 129 ~~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~Iga~s~v~~~-i~~~~~~ 173 (192)
T PRK09677 129 SAVVIGQRVWIGENVTILPG---------VSIGNGCIVGANSVVTKS-IPENTVI 173 (192)
T ss_pred CCeEEcCCcEECCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEE
Confidence 46788888888888888887 899999999999988775 5566555
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=66.00 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=32.4
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+=.||+++.||+++.|-+. -.||++++||.|++|-..
T Consensus 119 hPtIg~~V~IGagAkILG~---------I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 119 HPTIGNGVYIGAGAKILGN---------IEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred CCccCCCeEECCCCEEEcc---------eEECCCCEECCCceEccC
Confidence 5589999999999999887 899999999999988543
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.8e-05 Score=59.19 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=30.1
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccE
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI 362 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~i 362 (379)
...||++|.||.++.|..+ +.|+++|.|+.++.|.+.+
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~i~~gs~v~~~~ 93 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPG---------VTIGEGAVVGARSVVVRDL 93 (107)
T ss_pred CEEECCCCEECCCCEECCC---------CEECCCCEECCCCEEeCcC
Confidence 6778888888888888777 8888888888888886653
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=3e-05 Score=70.34 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=10.2
Q ss_pred CCeEEecCeEECCCcEECCCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTA 308 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~ 308 (379)
.+.+|.+.+.|..+++++++|
T Consensus 177 ~gVrI~~sa~Vr~gA~LGeGT 197 (341)
T TIGR03536 177 KGVRIADTARVRLGAYVGEGT 197 (341)
T ss_pred CCcEEcCCCeEcCCcEECCCC
Confidence 344455555555555555444
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.8e-06 Score=49.98 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=24.9
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
+++||++|.|++++.|.++ +.|+++|.|+++|.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGG---------VVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETT---------EEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCC---------CEECCCCEEcCCCEEC
Confidence 4567777777777777766 7777777777777765
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00032 Score=68.51 Aligned_cols=182 Identities=18% Similarity=0.305 Sum_probs=112.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcC----------------c----EEE-Ecccch
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACK----------------R----IYL-VGFYEE 62 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~----------------~----iiv-~~~~~~ 62 (379)
.++.+|+|||| .||||+- ..||.|++|+ |+++++...+++. . .+| ++....
T Consensus 115 gkvavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 115 GKLAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred CCEEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 46778999999 9999998 8899999884 8999999988762 1 233 444445
Q ss_pred HHHHHHHHhhcccCCc---cEEEecC---------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEE
Q 016989 63 REFALYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLL 113 (379)
Q Consensus 63 ~~i~~~l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~ 113 (379)
+...+|+... ..+|. .|.+..| ..+.|.++..... ++.+....-+++.+.
T Consensus 190 ~~T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 5688888863 44553 2333222 1255666544432 333333334689999
Q ss_pred cCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc--EEEeeecCC-----------Cccccee
Q 016989 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE--LLHYTEKPE-----------TFVSDLI 179 (379)
Q Consensus 114 ~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~--v~~~~ekp~-----------~~~~~~~ 179 (379)
..|+++ ..--..++-.+...+.++.+-+.+.. ...+.-|.+.....+++ |..+.|-+. ...-...
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~-~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~g 347 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWS 347 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeecC-CCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchh
Confidence 999976 33334566667777877765544321 12234476655212444 555555321 1123566
Q ss_pred eeeEEEeCHhhHHHhh
Q 016989 180 NCGVYVFTPDIFNAIQ 195 (379)
Q Consensus 180 ~~Giy~~~~~~l~~l~ 195 (379)
+++.|+|+-++++.+.
T Consensus 348 nI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 348 NVCLHMFTLDFLNQVA 363 (493)
T ss_pred hHHHhhccHHHHHHHH
Confidence 8889999998887764
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.9e-05 Score=62.05 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=13.9
Q ss_pred eEECCCcEECCCcEE-eccEECCCceeccc
Q 016989 344 TILGEAVGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 344 sii~~~~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
++||++|.||.+|.| .++.|+++++|+.+
T Consensus 74 ~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgag 103 (145)
T cd03349 74 VIIGNDVWIGHGATILPGVTIGDGAVIAAG 103 (145)
T ss_pred cEECCCCEECCCCEEeCCCEECCCCEECCC
Confidence 555555555555554 24444444444443
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.2e-05 Score=64.79 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCCCCceeCC--cchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhcc
Q 016989 31 IPKPLFPLGG--QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIME 104 (379)
Q Consensus 31 ~pK~llpi~g--~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~ 104 (379)
.+|+|+++.| +|||+|+++.+.. ++|++..... . ...+..+.. ......|...++..++.....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~~~~~iivv~~~~~~-~--------~~~~~~~i~-d~~~g~gpl~~~~~gl~~~~~ 72 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQRCAPVFVMAAPGQP-L--------PELPAPVLR-DELRGLGPLPATGRGLRAAAE 72 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhhcCCEEEEECCCCcc-c--------ccCCCCEec-cCCCCCCcHHHHHHHHHHHHh
Confidence 3899999999 9999999999865 6666554321 1 112333322 223345777777766654421
Q ss_pred CCCCeEEEEcCCeee-cC-ChHHHHHHHH
Q 016989 105 DNPSHIFLLNCDVCC-SF-PLPEMLDAHR 131 (379)
Q Consensus 105 ~~~~~~lv~~gD~i~-~~-dl~~~l~~~~ 131 (379)
...++++++.||+++ +. .+..+++.+.
T Consensus 73 ~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 73 AGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred cCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 123689999999999 43 4677776543
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00034 Score=67.52 Aligned_cols=180 Identities=18% Similarity=0.267 Sum_probs=106.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc-----------EEEEcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
.++.+|+|||| .||||+- ..||.|+||. |+++++..++++.. ++.+....++...+|++.+ .
T Consensus 55 ~kvavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-f 128 (420)
T PF01704_consen 55 GKVAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-F 128 (420)
T ss_dssp TCEEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-C
T ss_pred CCEEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-c
Confidence 46888999999 9999987 8899999995 66888888887764 4445555556688888863 2
Q ss_pred cCCccEEEecCC----------------C----------CCChHHHHHH-----HHHhhccCCCCeEEEEcCCeeecCCh
Q 016989 75 ELRIPVRYLRED----------------K----------PHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPL 123 (379)
Q Consensus 75 ~~~~~i~~~~~~----------------~----------~~g~~~al~~-----~~~~i~~~~~~~~lv~~gD~i~~~dl 123 (379)
.++.++.+..|. . +-|.++.... .++.+....-+++.+.+.|++...-=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 222232221110 0 2256543332 23333333346899999999443222
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc--EEEeeecCCC--------cccceeeeeEEEeCHhhHHH
Q 016989 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE--LLHYTEKPET--------FVSDLINCGVYVFTPDIFNA 193 (379)
Q Consensus 124 ~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~--v~~~~ekp~~--------~~~~~~~~Giy~~~~~~l~~ 193 (379)
..++-.+.++++++.+-+.+... ....-|.+... +|+ +..+.+-|.. ....+.+++..+|+-..++.
T Consensus 209 p~~lG~~~~~~~~~~~evv~Kt~-~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~ 285 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPKTS-PDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKR 285 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-CS-TTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHHhccchhheeeeecCC-CCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHH
Confidence 34677777788887666655431 12333555543 454 4455443321 13456688888999777765
Q ss_pred hh
Q 016989 194 IQ 195 (379)
Q Consensus 194 l~ 195 (379)
+.
T Consensus 286 ~~ 287 (420)
T PF01704_consen 286 LL 287 (420)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.2e-05 Score=74.97 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=35.1
Q ss_pred EECCCcEECCCCCCCcEEeceEECC----------------C---CEECCCcEEeecccccccccceEECCCcEECCCcE
Q 016989 297 YVHPSAKIHPTAKENAVVTNAIVGW----------------K---SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVV 357 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~~s~ig~----------------~---~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~ 357 (379)
+|++++.|+ ++|.|.+|+|.. + +.||++|+|.+ ++|+++|.||++|.
T Consensus 333 vI~~~~~Ig----~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~----------~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 333 VVGLRSRIG----EGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRN----------AIIDKNARIGKNVV 398 (436)
T ss_pred EEcCCCEEC----CCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcc----------eEecCCCEECCCcE
Confidence 444444444 556788666644 2 37888888876 99999999999998
Q ss_pred Ee
Q 016989 358 VT 359 (379)
Q Consensus 358 i~ 359 (379)
|.
T Consensus 399 i~ 400 (436)
T PLN02241 399 II 400 (436)
T ss_pred Ee
Confidence 85
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.1e-05 Score=71.23 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=17.7
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
+|.||+|+.||++|+|.+| ..+++|.|..++.++..+.|.
T Consensus 276 ~C~Ig~~vvIG~r~~i~~g----V~l~~s~il~~~~~~~~s~i~ 315 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDG----VRLQDSTILGADYYETHSEIS 315 (371)
T ss_pred ccEECCCceECCCcEecCc----eEEEeeEEEccceechhHHHH
Confidence 4444444444444444443 344444444444444444333
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0017 Score=62.33 Aligned_cols=177 Identities=20% Similarity=0.290 Sum_probs=104.9
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc----------EEEEcccchHHHHHHHHhhccc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGFYEEREFALYVSSISNE 75 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~----------iiv~~~~~~~~i~~~l~~~~~~ 75 (379)
.++.+|.|||| +||||+- .-||.+++|. |+++++.+.+.++. .++-+....+.-..++... ..
T Consensus 104 ~klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y 177 (472)
T COG4284 104 GKLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DY 177 (472)
T ss_pred CceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hh
Confidence 46889999999 9999999 7899999999 99999999998875 3333335443344444321 11
Q ss_pred CCc---cEEEecCC-----------------------CCCChH---HHHHH--HHHhhccCCCCeEEEEcCCeee-cCCh
Q 016989 76 LRI---PVRYLRED-----------------------KPHGSA---GALYN--FRDLIMEDNPSHIFLLNCDVCC-SFPL 123 (379)
Q Consensus 76 ~~~---~i~~~~~~-----------------------~~~g~~---~al~~--~~~~i~~~~~~~~lv~~gD~i~-~~dl 123 (379)
++. .|.+..|+ .+.|.+ .+|.. ..+.+....-+++.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 221 12221110 133444 33333 2333333334689999999954 5555
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCceeEEE-EeCCCCcEEEeeecCCCc----------ccceee-eeEEEeCHhhH
Q 016989 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELV-ADPDTNELLHYTEKPETF----------VSDLIN-CGVYVFTPDIF 191 (379)
Q Consensus 124 ~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~~v~~~~ekp~~~----------~~~~~~-~Giy~~~~~~l 191 (379)
. ++..+...+.+.++=+.... .....-|.+. .+. .-+|+.+.+-|... .....+ .++|+++-..+
T Consensus 258 ~-~lg~~~~~~~e~~~e~t~Kt-~a~ekvG~Lv~~~g-~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l 334 (472)
T COG4284 258 K-FLGFMAETNYEYLMETTDKT-KADEKVGILVTYDG-KLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFL 334 (472)
T ss_pred H-HHHHHHhcCcceeEEEeecc-cccccceEEEEeCC-ceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHH
Confidence 3 56667777777766554432 2234456655 543 46788887765421 112334 67777775554
Q ss_pred H
Q 016989 192 N 192 (379)
Q Consensus 192 ~ 192 (379)
.
T Consensus 335 ~ 335 (472)
T COG4284 335 K 335 (472)
T ss_pred H
Confidence 3
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0001 Score=65.15 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=46.9
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEee----cccccccc-cceEECCCcEECCCcEEe
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQA----EGDFNAKL-GITILGEAVGVEDEVVVT 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~----~~~~~~~~-~~sii~~~~~i~~~~~i~ 359 (379)
+++++.+..+|-=|+.++.+|- .+++++ .++||+||-||.++.|.+ ..-....| +||.||.++.+.+|+.|.
T Consensus 125 ~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vG 204 (271)
T COG2171 125 KGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVG 204 (271)
T ss_pred CCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeC
Confidence 3344444333333444443333 344454 566777777776665542 11111111 337777777777777773
Q ss_pred -ccEECCCceeccccc
Q 016989 360 -NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 -~~ii~~~~~i~~~~~ 374 (379)
+|+|..|++|+++++
T Consensus 205 dg~VV~aGv~I~~~tk 220 (271)
T COG2171 205 DGCVVAAGVFITQDTK 220 (271)
T ss_pred CCcEEecceEEeCCcc
Confidence 777777777777665
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00088 Score=61.91 Aligned_cols=178 Identities=14% Similarity=0.160 Sum_probs=105.4
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc--------------EEE-EcccchHHHHHHHHh
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR--------------IYL-VGFYEEREFALYVSS 71 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~--------------iiv-~~~~~~~~i~~~l~~ 71 (379)
.+|+|||| .||||+- ..||.++|+ .|++++++.++++.. .+| +.....+...+|+++
T Consensus 2 a~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 57999999 9999998 889999999 589999999988842 344 444455568888876
Q ss_pred hcccCCcc---EEEecC------------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee
Q 016989 72 ISNELRIP---VRYLRE------------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC 119 (379)
Q Consensus 72 ~~~~~~~~---i~~~~~------------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~ 119 (379)
. ..+|.+ |.+..| ..+.|.++..... ++.+....-+++.+..-|+++
T Consensus 77 n-~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L 155 (315)
T cd06424 77 N-NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNAL 155 (315)
T ss_pred C-CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhh
Confidence 3 333321 221110 1245666443332 233333334688888889988
Q ss_pred -cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE-eCCCCc--E--EEeeecCC------------Ccccc----
Q 016989 120 -SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNE--L--LHYTEKPE------------TFVSD---- 177 (379)
Q Consensus 120 -~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~~--v--~~~~ekp~------------~~~~~---- 177 (379)
......++-.+...++++...+.+. ...+.-|.+.. +..+|+ | +.+.|=+. ...+.
T Consensus 156 ~~~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f 233 (315)
T cd06424 156 AFKAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPF 233 (315)
T ss_pred hhccChhhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccC
Confidence 3334444555566677765554443 23467787653 211333 3 44443210 00122
Q ss_pred eeeeeEEEeCHhh-HHHhh
Q 016989 178 LINCGVYVFTPDI-FNAIQ 195 (379)
Q Consensus 178 ~~~~Giy~~~~~~-l~~l~ 195 (379)
..+++.++|+-+. .+.+.
T Consensus 234 ~gNi~~~~f~l~~~~~~l~ 252 (315)
T cd06424 234 PGNINQLVFSLGPYMDELE 252 (315)
T ss_pred CCeeeeEEEeHHHHHHHHh
Confidence 5689999999554 34444
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=65.36 Aligned_cols=84 Identities=15% Similarity=0.274 Sum_probs=40.5
Q ss_pred CCeEEecCeEECCCc-EECCCCCCCcEEe-ceEECCCCEECCCcEEee----cccccccc-cceEECCCcEECCCcEEe-
Q 016989 288 KNATIIGDVYVHPSA-KIHPTAKENAVVT-NAIVGWKSSIGRWSRVQA----EGDFNAKL-GITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~-~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~----~~~~~~~~-~~sii~~~~~i~~~~~i~- 359 (379)
++.+|.++++|..++ .+++..+ ++.|. .++||++|.|++++.|.+ +.-....| ++|.||.+|.| +..|.
T Consensus 170 eGtvVm~~a~VN~nAgtIG~~iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd 246 (319)
T TIGR03535 170 EGTTVMHEGFVNFNAGTLGASMV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGD 246 (319)
T ss_pred CCCEEcCCCEEccCceEecCceE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECC
Confidence 445555555555555 3554422 34444 555555555555555221 21111111 22666666666 55663
Q ss_pred ccEECCCceeccccc
Q 016989 360 NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ~~ii~~~~~i~~~~~ 374 (379)
+|+|+.|++|-.+.+
T Consensus 247 ~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 247 DCVVEAGLYVTAGTK 261 (319)
T ss_pred CCEECCCCEEeCCeE
Confidence 666666666655543
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.6e-05 Score=44.78 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=19.4
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
..||++|.||++|.| + ..||++|.|+.|+.|.
T Consensus 2 v~IG~~~~ig~~~~i--g---------i~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--G---------ITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EEE-TTEEE-TT-EE--T---------SEE-TTEEE-TTEEEE
T ss_pred eEECCCEEECccccc--C---------CEEcCCCEECCCCEEc
Confidence 467777777777776 3 7777777777777664
|
... |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00048 Score=72.35 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=56.9
Q ss_pred eEEEEcCCeeecCC--hHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC-CcEEEeeecCCC--------cccc
Q 016989 109 HIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT-NELLHYTEKPET--------FVSD 177 (379)
Q Consensus 109 ~~lv~~gD~i~~~d--l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~-~~v~~~~ekp~~--------~~~~ 177 (379)
.++|..||.+..++ +.+ -..++++......+..-.++.|+++.+.+. +++..+..||.. ....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 59999999876332 222 123556666666665678899998887531 577778888852 2355
Q ss_pred eeeeeEEEeCHhhHHHhhcc
Q 016989 178 LINCGVYVFTPDIFNAIQGV 197 (379)
Q Consensus 178 ~~~~Giy~~~~~~l~~l~~~ 197 (379)
+.++|+|+|+.++++.|.+.
T Consensus 228 l~D~g~~~~~~~a~~~L~~~ 247 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKR 247 (974)
T ss_pred EEeeeEEEEChHHHHHHHHh
Confidence 78999999998887766543
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00012 Score=58.49 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=47.8
Q ss_pred EEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEee----cccccccc-----------------------cc
Q 016989 291 TIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQA----EGDFNAKL-----------------------GI 343 (379)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~----~~~~~~~~-----------------------~~ 343 (379)
.|.+++.|++++.|+|.++--+.-+.-+||.|+.|.+.+.|.+ +.+|+++= ++
T Consensus 22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~ 101 (190)
T KOG4042|consen 22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR 101 (190)
T ss_pred ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence 4456677777777776665122224678888888888777766 22221111 33
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
-+|+..|.+|+|+.+. +|+||..+.|..
T Consensus 102 NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 102 NVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred ceEeeeeEecCCcEEcCCceeccceEEec
Confidence 4555566666666663 666666666544
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0007 Score=58.40 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=30.6
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
.++||++|.||.++.|..+ +.||+++.||.+++++..
T Consensus 124 ~v~IG~~vwIG~~a~IlpG---------V~IG~gavigagsVVtkd 160 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPG---------VTIGEGAVIGAGSVVTKD 160 (190)
T ss_pred CeEECCCeEEcCccEECCC---------EEECCCcEEeeCCEEeCc
Confidence 6888888888888888888 888888888888888653
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00075 Score=69.76 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=31.8
Q ss_pred eEECCCCEECCCcEEeecccccc--cccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNA--KLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~--~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+.||++|.|+++|.|......+. ..++++||++|.||.+|.| .++.||+++.|+.++
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~S 676 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDS 676 (695)
T ss_pred eEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 36666666666666644222111 2334666777777766666 356666666665543
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00052 Score=58.85 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=7.0
Q ss_pred ceEECCCCEECCCcEE
Q 016989 316 NAIVGWKSSIGRWSRV 331 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i 331 (379)
.++||++|.|..++.+
T Consensus 174 TAvvg~~vSilH~Vtl 189 (269)
T KOG4750|consen 174 TAVVGDNVSILHPVTL 189 (269)
T ss_pred eeEeccceeeecceee
Confidence 4444444444444444
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0051 Score=62.02 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=91.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc-----------------EEE-EcccchHHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-----------------IYL-VGFYEEREF 65 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~-----------------iiv-~~~~~~~~i 65 (379)
.++.+|.|||| .||||+- ..||.++|+ .|+++++..++.+.. .+| +.....+..
T Consensus 127 ~kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 127 GNAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred CcEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 36788999999 9999997 789999997 489999999988632 344 444444568
Q ss_pred HHHHHhhcccCCc---cEEEecCC------------------------CCCChHHHHHHH-----HHhhccCCCCeEEEE
Q 016989 66 ALYVSSISNELRI---PVRYLRED------------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLL 113 (379)
Q Consensus 66 ~~~l~~~~~~~~~---~i~~~~~~------------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~ 113 (379)
.+|+.++ ..+|. .|.+..|. .+.|.++..... ++.+....-+++.+.
T Consensus 202 ~~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~ 280 (615)
T PLN02830 202 LKLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFF 280 (615)
T ss_pred HHHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEE
Confidence 8888864 33332 12221110 234554333321 333333334689999
Q ss_pred cCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 114 ~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
..|+++ ......++-.+..++.++.+.+.+.. ..+.-|.+..
T Consensus 281 ~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~--~~E~vGvi~~ 323 (615)
T PLN02830 281 QDTNGLVFKAIPAALGVSATKGFDMNSLAVPRK--AKEAIGAIAK 323 (615)
T ss_pred eccchhhhcccHHHhHHHHhcCCceEEEEEECC--CCcccceEEE
Confidence 999977 33347778888888888776666542 3455666554
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00065 Score=58.26 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCeEEecCeEECCCcEECCCCC-----CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-----ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-----~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
.+.+|++.++||.++.+.+++. .++--.+-.||+||.||.++.|-++ ..||+|++|+.|+.|
T Consensus 167 tgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgn---------V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 167 TGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGN---------VTIGEGAVIAAGSVV 233 (269)
T ss_pred cceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCC---------eeECCCcEEeccceE
Confidence 4566777777777777777765 2222334478888888888777776 777777777777766
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00094 Score=69.05 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=23.4
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNK 367 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~ 367 (379)
+++||++|.||++|.|..+ +.||++|.||.++.+. +..+.+++
T Consensus 645 ~v~IG~~~~IG~~a~V~~g---------~~IGd~a~Ig~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 645 TVTIGDGATLGPGAIVLYG---------VVMGEGSVLGPDSLVMKGEEVPAHT 688 (695)
T ss_pred CeEECCCCEECCCCEECCC---------CEECCCCEECCCCEEcCCcccCCCC
Confidence 5666666666666665555 5555655555555542 33444443
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.001 Score=57.31 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=56.4
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~- 359 (379)
......++++||+++.+..+++ +++.|...+++.+|+|+.+|.+.++ .+...++.||+++.|+
T Consensus 15 ~~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gN---------V~ve~dayiGE~~sI~g 85 (277)
T COG4801 15 AIIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN---------VIVENDAYIGEFSSIKG 85 (277)
T ss_pred eeEEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeecc---------EEEcCceEEeccceeee
Confidence 3456678889999888887766 7888888899999999999999887 7777778888888775
Q ss_pred ccEECCCceeccc
Q 016989 360 NSIVLPNKTLNVS 372 (379)
Q Consensus 360 ~~ii~~~~~i~~~ 372 (379)
.-++..+-.||++
T Consensus 86 kl~v~gdLdig~d 98 (277)
T COG4801 86 KLTVIGDLDIGAD 98 (277)
T ss_pred eEEEecccccccc
Confidence 3333333334433
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00037 Score=42.40 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=4.1
Q ss_pred EECCCCEECCCc
Q 016989 318 IVGWKSSIGRWS 329 (379)
Q Consensus 318 ~ig~~~~ig~~~ 329 (379)
.||++|.|+++|
T Consensus 21 ~Ig~~~~I~~~~ 32 (36)
T PF00132_consen 21 VIGDNCVIGPGV 32 (36)
T ss_dssp EE-TTEEEETTE
T ss_pred EECCCCEEcCCC
Confidence 333333333333
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=55.72 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=13.5
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
++||++|-||.+|.|- +..||++++|++
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gaviga 153 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGA 153 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEee
Confidence 5555555555555552 334444444433
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00065 Score=53.86 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=37.1
Q ss_pred EECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 297 YVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
-||+.+-|+ ++|+++.+.||+.+.+|.++.|+.+ |+|-+.|.|.+++++- .+.+.|.++++.+
T Consensus 86 hiGdhVFie----E~cVVnAAqIgsyVh~GknaviGrr---------CVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 86 HIGDHVFIE----EECVVNAAQIGSYVHLGKNAVIGRR---------CVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred eecceEEEe----cceEeehhhheeeeEeccceeEcCc---------eEhhhheeccCCcccCcccccCCceEEcCC
Confidence 344444444 2335666666666666666666665 6666666666666663 5566666665543
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0021 Score=51.04 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=11.4
Q ss_pred ceEECCCCEECCCcEEee
Q 016989 316 NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~ 333 (379)
+.-||+.++|+++|.+..
T Consensus 84 p~hiGdhVFieE~cVVnA 101 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNA 101 (184)
T ss_pred eeeecceEEEecceEeeh
Confidence 455666666666666655
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0034 Score=50.30 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=22.8
Q ss_pred EeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 314 VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 314 i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
.....+|++-.|+..|.++++ +.+.++|.||.+|.|.
T Consensus 93 s~A~kvGd~NVieskayvg~g---------v~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 93 SSAKKVGDRNVIESKAYVGDG---------VSVSSGCSVGAKCTVF 129 (190)
T ss_pred hhhhhhcCcceEeeeeEecCC---------cEEcCCceeccceEEe
Confidence 334456666666666666665 6666666666666664
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.3 Score=42.17 Aligned_cols=131 Identities=17% Similarity=0.285 Sum_probs=73.9
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcC---c--------EEEEcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACK---R--------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~---~--------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
.++..+=|-|| .|+-|+- ..||.+++|. |.+.++-++.+.. + |+.....-++....+++.+..
T Consensus 102 ~KLavlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~ 176 (498)
T KOG2638|consen 102 NKLAVLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAG 176 (498)
T ss_pred hheEEEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcC
Confidence 45677788999 9999998 8899999996 6677776655544 3 344444433445666655422
Q ss_pred cCCccEEEecC-------------------C-----C-CCChH---HHHHH--HHHhhccCCCCeEEEEcCCeee-cCCh
Q 016989 75 ELRIPVRYLRE-------------------D-----K-PHGSA---GALYN--FRDLIMEDNPSHIFLLNCDVCC-SFPL 123 (379)
Q Consensus 75 ~~~~~i~~~~~-------------------~-----~-~~g~~---~al~~--~~~~i~~~~~~~~lv~~gD~i~-~~dl 123 (379)
..+.+....| + + +-|.+ ++++. .++.+=.+..|+++|.+.|.+. ..||
T Consensus 177 -~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL 255 (498)
T KOG2638|consen 177 -SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL 255 (498)
T ss_pred -CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH
Confidence 1122211110 0 0 12322 23332 1222222334789999999998 5676
Q ss_pred HHHHHHHHhcCCceEEEEEEe
Q 016989 124 PEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 124 ~~~l~~~~~~~~~~ti~~~~~ 144 (379)
. +++...+.+....|-+++.
T Consensus 256 ~-ILn~~i~~~~ey~MEvTdK 275 (498)
T KOG2638|consen 256 N-ILNHVINNNIEYLMEVTDK 275 (498)
T ss_pred H-HHHHHhcCCCceEEEeccc
Confidence 4 3444444455565555543
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.056 Score=46.90 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=38.1
Q ss_pred CeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 295 DVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.+++.-++.|+ +++.+.-.++|+...+|+++.|.+ .+++.++.|+.+|.+. |.++..+++||+.+
T Consensus 16 ~ivv~gdViIG----~nS~l~~~V~g~~iivge~v~i~G----------diva~diridmw~kv~gNV~ve~dayiGE~~ 81 (277)
T COG4801 16 IIVVKGDVIIG----KNSMLKYGVVGEEIIVGERVRIYG----------DIVAKDIRIDMWCKVTGNVIVENDAYIGEFS 81 (277)
T ss_pred eEEEeccEEEc----ccceeeeeeeeeeEEeccCcEEee----------eEEecceeeeeeeEeeccEEEcCceEEeccc
Confidence 34445556666 345677667777777777777766 5555555555555553 44555555555443
|
|
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.085 Score=45.53 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=54.2
Q ss_pred cchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcC
Q 016989 41 QPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNC 115 (379)
Q Consensus 41 ~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~g 115 (379)
+|||.|+++.+.. ++|++.. + .+.++.. .+++. ++.+.. .|...+++.+.+++..+ .+.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~-~-~~~~~~~----~~~v~--~i~~~~-~G~~~si~~al~~~~~~-~~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD-P-ALLEAAR----NLGAP--VLRDPG-PGLNNALNAALAEAREP-GGAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC-H-HHHHHHH----hcCCE--EEecCC-CCHHHHHHHHHHHhhcc-CCeEEEEeC
Confidence 3999999998875 5666553 2 2444432 23343 333333 38999999998876532 246999999
Q ss_pred Ceee--cCChHHHHHHHH
Q 016989 116 DVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 116 D~i~--~~dl~~~l~~~~ 131 (379)
|+++ ..+++++++.+.
T Consensus 100 D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCHHHHHHHHHhcc
Confidence 9998 566888888653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.31 Score=39.81 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=64.4
Q ss_pred ceeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCC
Q 016989 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (379)
Q Consensus 36 lpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~ 107 (379)
+|.-|+ ..|..+++.+.+ |+|+-........+.+..... .+..+.++..+...|.+.+...+.+....
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~--- 79 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKG--- 79 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--S---
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccce---
Confidence 344444 556666665554 555544332234445554332 34567777666666888999999888776
Q ss_pred CeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEE
Q 016989 108 SHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 108 ~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~~~ 142 (379)
++++++..|..+..+ +..+++.+.+.+.++.+...
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 489999999999555 89999988886665544433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.71 Score=36.73 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=55.9
Q ss_pred eeCC-cchhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 016989 37 PLGG-QPMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (379)
Q Consensus 37 pi~g-~pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~ 108 (379)
|..| .+++.++++.+.+ ++++.....+...+.+...... ...+.........|.+.++..+.+..+. +
T Consensus 4 ~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~---d 79 (156)
T cd00761 4 PAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAARG---E 79 (156)
T ss_pred eecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhcC---C
Confidence 3443 4888888888754 5555444333345555443221 1234444455667889999888887743 5
Q ss_pred eEEEEcCCeeecCC-hHHHHHHHH
Q 016989 109 HIFLLNCDVCCSFP-LPEMLDAHR 131 (379)
Q Consensus 109 ~~lv~~gD~i~~~d-l~~~l~~~~ 131 (379)
.++++.+|.++..+ +..++..+.
T Consensus 80 ~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 80 YILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred EEEEECCCCccCccHHHHHHHHHh
Confidence 79999999999555 555544443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.60 E-value=1 Score=43.65 Aligned_cols=42 Identities=31% Similarity=0.640 Sum_probs=35.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR 53 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~ 53 (379)
.+..++++||| +|||++- ..||.+.|++ |+.++++..+.+..
T Consensus 96 ~~~a~~llaGg--qgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~ 140 (477)
T KOG2388|consen 96 GKVAVVLLAGG--QGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILK 140 (477)
T ss_pred CcceEEEeccC--ceeeecc---CCCcceeecCCccccchhhhhHHHHHH
Confidence 46789999999 9999998 8899999998 45688888777653
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.38 Score=46.81 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
+++.|-+|+|..++.+|+++.|.. |.|+.++.||++|.|.++-+....
T Consensus 278 ~~~~VinSil~~~~~vg~~svIe~----------s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 278 ASSCVINSILEGGVSVGPGSVIEH----------SHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred CCeeEEEeEecCCceECCCCEEEe----------eecCCCCEECCCCEEECCcccccc
Confidence 345788999999999999999988 999999999999999998655544
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.7 Score=35.80 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=57.8
Q ss_pred CceeCCcc---hhHHHHHhcCc-------EEEEcccc-hHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhc
Q 016989 35 LFPLGGQP---MVHHPISACKR-------IYLVGFYE-EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (379)
Q Consensus 35 llpi~g~p---li~~~i~~l~~-------iiv~~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~ 103 (379)
++|+.++. .|..+++.+.. ++|+-... .....+.+..+..+.+ +.++......|.+.+.-.+....+
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35666553 67777777754 55543322 3334444444333333 444444445688888888887665
Q ss_pred cCCCCeEEEEcCCeeec-CChHHHHHHHHhc
Q 016989 104 EDNPSHIFLLNCDVCCS-FPLPEMLDAHRNY 133 (379)
Q Consensus 104 ~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~ 133 (379)
. +.++++.+|.... .-+..+++...+.
T Consensus 81 g---d~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 81 Y---DWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred C---CEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 4 5899999999884 4478888876543
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=89.31 E-value=4.1 Score=33.11 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=56.1
Q ss_pred eeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 016989 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (379)
Q Consensus 37 pi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~ 108 (379)
|.-|+ ..+..+++.+.. ++|+-........+.+..... .+.++..+...|.+.++..+.+..+. +
T Consensus 4 ~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~~~---~ 76 (166)
T cd04186 4 VNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREAKG---D 76 (166)
T ss_pred EecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhCCC---C
Confidence 44344 666777776654 555544333334444543211 45555555667888899988887743 5
Q ss_pred eEEEEcCCeeecCC-hHHHHHHHHhc
Q 016989 109 HIFLLNCDVCCSFP-LPEMLDAHRNY 133 (379)
Q Consensus 109 ~~lv~~gD~i~~~d-l~~~l~~~~~~ 133 (379)
.++++..|..+..+ +..+++.+.+.
T Consensus 77 ~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 77 YVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEEECCCcEECccHHHHHHHHHHhC
Confidence 89999999988444 77777765544
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=88.01 E-value=3.8 Score=33.30 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=53.4
Q ss_pred ceeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCC
Q 016989 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (379)
Q Consensus 36 lpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~ 107 (379)
+|.-++ ..|..+|+.+.+ ++|+-........+.+..........+.+.......|.+.+...+++....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~--- 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG--- 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC---
Confidence 344444 455555555543 555543322223333333222211234444455667888888888887743
Q ss_pred CeEEEEcCCeeecC-ChHHHHHHHHhc
Q 016989 108 SHIFLLNCDVCCSF-PLPEMLDAHRNY 133 (379)
Q Consensus 108 ~~~lv~~gD~i~~~-dl~~~l~~~~~~ 133 (379)
++++++.+|..+.. .+..++..+.+.
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccC
Confidence 58999999998844 477775655443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=87.76 E-value=11 Score=34.27 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=54.3
Q ss_pred hhHHHHHhcCc----EEEEccc--chHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCC
Q 016989 43 MVHHPISACKR----IYLVGFY--EEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD 116 (379)
Q Consensus 43 li~~~i~~l~~----iiv~~~~--~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD 116 (379)
.|...++.+.+ |+|+-+. ....+.+.+.. ...+.++..+...|-+.+.-.+++.......|++++++.|
T Consensus 9 ~l~~~l~sl~~q~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D 83 (281)
T TIGR01556 9 HLGELITSLPKQVDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQD 83 (281)
T ss_pred HHHHHHHHHHhcCCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45555555554 5555433 22234443332 1346666666677999999988887643335789999999
Q ss_pred eeecC-ChHHHHHHHHhc
Q 016989 117 VCCSF-PLPEMLDAHRNY 133 (379)
Q Consensus 117 ~i~~~-dl~~~l~~~~~~ 133 (379)
...+. -+..+++...+.
T Consensus 84 ~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 84 SRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 99954 477777766544
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=86.83 E-value=8.3 Score=34.17 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCCCCC--CCceeCCc-chhHHHHHhcCc---------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHH
Q 016989 28 SLNIPK--PLFPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGAL 95 (379)
Q Consensus 28 t~~~pK--~llpi~g~-pli~~~i~~l~~---------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al 95 (379)
....|+ -++|..|. ..|...|+.+.. ++|+-....+...+.++..... .+.++......|-+.++
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHH
Confidence 334444 45566665 445555555432 4554443332334444433222 34444445556888888
Q ss_pred HHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 016989 96 YNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (379)
Q Consensus 96 ~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~ 132 (379)
..+.+.... |.++++.+|...+.+ ++.+++....
T Consensus 102 n~gi~~a~~---d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 102 NRALALATG---EIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHHHHHcCC---CEEEEEccccCcCHHHHHHHHHHhcC
Confidence 888887764 589999999999544 7888877643
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=86.33 E-value=7.3 Score=34.59 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=41.4
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEE
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~ 140 (379)
.+..+......|-+.++..+...... +.++++.+|... +..+..+++...+.+++++..
T Consensus 69 ~v~~~~~~~n~G~~~a~n~g~~~a~g---~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 69 RILLRPRPGKLGLGTAYIHGLKHASG---DFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred cEEEEecCCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 34444445556888888888776654 589999999988 445888888766666665443
|
|
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=86.33 E-value=27 Score=32.08 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=39.9
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCC
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGG 135 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~ 135 (379)
.+.++..+...|-+.+.-.++..... ++++++++|.... .-+..+++...+.+.
T Consensus 59 ~v~vi~~~~n~G~~~a~N~g~~~A~g---d~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 59 KVKVLRLKKREGLIRARIAGARAATG---DVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHccC---CEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 45555555667888888888777654 5899999999994 448999988766544
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=85.74 E-value=4.7 Score=34.79 Aligned_cols=59 Identities=20% Similarity=0.121 Sum_probs=43.0
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILV 141 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~ 141 (379)
+.++......|.+.++..+.+.... +.++++.+|..+ +..+..+++...+.+.++++..
T Consensus 59 i~~i~~~~n~G~~~a~~~g~~~a~g---d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 59 IRVLTLPKNRGKGGAVRAGMLAARG---DYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred EEEEEcccCCCcHHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 4555555567889999998887765 589999999988 4558888887555566554443
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.60 E-value=7 Score=33.27 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=62.0
Q ss_pred CcchhHHHHHhcCc-------EEEEcc---cchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCe
Q 016989 40 GQPMVHHPISACKR-------IYLVGF---YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSH 109 (379)
Q Consensus 40 g~pli~~~i~~l~~-------iiv~~~---~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~ 109 (379)
|-|++-|.+..... ++++-. .......+.++.... +-+|...+-...+|.+.|...+..+...+ .
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg--~d~i~l~pR~~klGLgtAy~hgl~~a~g~---f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG--EDNILLKPRTKKLGLGTAYIHGLKHATGD---F 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC--CCcEEEEeccCcccchHHHHhhhhhccCC---e
Confidence 34677777776654 555522 233445555553222 13455555456788888999998887764 6
Q ss_pred EEEEcCCeee-cCChHHHHHHHHhcCCceEEEE
Q 016989 110 IFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILV 141 (379)
Q Consensus 110 ~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~ 141 (379)
++++.+|.-- +.-+.+|++...+.+.+.+..+
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 7888899766 5668999998777665665544
|
|
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=84.51 E-value=8.5 Score=34.05 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=41.0
Q ss_pred ccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEE
Q 016989 78 IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 78 ~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~ 140 (379)
.++.........|.+.++..+.+..+. |.++++.+|...+.+ +.++++.+.+.+.++.++
T Consensus 59 ~~i~~~~~~~~~G~~~a~n~g~~~a~g---d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 59 FRVVVVPPSQPRTKPKACNYALAFARG---EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHHhcCC---CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 345444444556888899888887554 589999999999544 788888776543444333
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=84.40 E-value=7.5 Score=33.14 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=52.1
Q ss_pred chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEc
Q 016989 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (379)
Q Consensus 42 pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~ 114 (379)
..|..+|+.+.+ |+|+-....+...+.+.......+ +.++..+...|.+.++-.+.+.......+.++++.
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld 87 (202)
T cd04185 10 DLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD 87 (202)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence 456666666643 555544333335555554433322 45555555667777777766654322346899999
Q ss_pred CCeeecCC-hHHHHHHHH
Q 016989 115 CDVCCSFP-LPEMLDAHR 131 (379)
Q Consensus 115 gD~i~~~d-l~~~l~~~~ 131 (379)
.|..++.+ +..+++...
T Consensus 88 ~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 88 DDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCcChHHHHHHHHHHh
Confidence 99999554 666666554
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=84.11 E-value=9 Score=33.12 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=40.1
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTI 139 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ti 139 (379)
+.++......|-+.++..+++.... +.++++++|...+ ..+..+++.....+.+++.
T Consensus 55 i~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 55 VRLIVRPGKRGLGSAYIEGFKAARG---DVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred eEEEecCCCCChHHHHHHHHHHcCC---CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3444445567888899888887765 5899999998884 4478888875555555433
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=7.8 Score=36.39 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=41.2
Q ss_pred CccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceE
Q 016989 77 RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGT 138 (379)
Q Consensus 77 ~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~t 138 (379)
+.++..+......|.+.|+..+.+..+. |.++++.+|.-. +.++.++++... .+.+++
T Consensus 64 ~~~v~~i~~~~n~G~~~A~~~G~~~A~g---d~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 64 DSHIVAILLNRNYGQHSAIMAGFSHVTG---DLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 3444443334456888999998877654 589999999998 567899998764 456654
|
|
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=83.12 E-value=8.2 Score=32.99 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=52.8
Q ss_pred eeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 016989 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (379)
Q Consensus 37 pi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~ 108 (379)
|.-|+ ..|...|+.+.+ |+|+-....+...+.++......+..+.+.......|.+.++..+....+. +
T Consensus 5 p~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g---~ 81 (214)
T cd04196 5 ATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADG---D 81 (214)
T ss_pred EecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCC---C
Confidence 34333 355555655543 555533222223333433333333344555556667888888887665543 5
Q ss_pred eEEEEcCCeeec-CChHHHHHHHHh
Q 016989 109 HIFLLNCDVCCS-FPLPEMLDAHRN 132 (379)
Q Consensus 109 ~~lv~~gD~i~~-~dl~~~l~~~~~ 132 (379)
+++++..|..+. ..+..+++...+
T Consensus 82 ~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 82 YVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred EEEEECCCcccChhHHHHHHHHHhc
Confidence 899999998884 448888886333
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=81.56 E-value=10 Score=31.60 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=39.8
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEEE
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ti~ 140 (379)
++.++......|.+.++..+...... ++++++.+|...+ ..+..+++. ...+.++++.
T Consensus 56 ~i~~i~~~~n~G~~~a~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g 114 (181)
T cd04187 56 RVKVIRLSRNFGQQAALLAGLDHARG---DAVITMDADLQDPPELIPEMLAK-WEEGYDVVYG 114 (181)
T ss_pred CEEEEEecCCCCcHHHHHHHHHhcCC---CEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEE
Confidence 34454444566888899888877654 5899999999984 447888886 4445554443
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=81.14 E-value=10 Score=31.50 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=41.1
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEEEE
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTILV 141 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ti~~ 141 (379)
.++..+...|-+.++..+.+.... |+++++.+|.... ..+..+++.....+.++.+..
T Consensus 57 ~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 57 RVIRLSRNFGKGAAVRAGFKAARG---DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred EEEEccCCCCccHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 445555567888888888887765 5899999998884 448888887566565554443
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=80.98 E-value=8.4 Score=33.76 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=52.9
Q ss_pred ceeCCcc--hhHHHHHhcCc-------EEEEccc-chHH----HHHHHHhhcccCCccEEEecCCCCCC-hHHHHHHHHH
Q 016989 36 FPLGGQP--MVHHPISACKR-------IYLVGFY-EERE----FALYVSSISNELRIPVRYLREDKPHG-SAGALYNFRD 100 (379)
Q Consensus 36 lpi~g~p--li~~~i~~l~~-------iiv~~~~-~~~~----i~~~l~~~~~~~~~~i~~~~~~~~~g-~~~al~~~~~ 100 (379)
+|.-|.+ +|...++.+.+ ++|+-+. .+.. ++++... .+.++.++......| .++++-.+++
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~----~~~~i~~i~~~~~~G~~~~a~n~g~~ 79 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ----LGERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH----hCCcEEEEEcCCCCCCchHHHHHHHH
Confidence 4566652 67777777754 5555432 2222 2333332 233454444333345 4778888877
Q ss_pred hhccCCCCeEEEEcCCeeecCC-hHHHHHHHH
Q 016989 101 LIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (379)
Q Consensus 101 ~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~ 131 (379)
..... .|.++++.+|..++.+ +..++....
T Consensus 80 ~a~~~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 80 RTAPD-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred hcCCC-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 76432 3689999999988544 788887654
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 379 | ||||
| 2ggo_A | 401 | Crystal Structure Of Glucose-1-Phosphate Thymidylyl | 2e-06 | ||
| 3juj_A | 281 | The Crystal Structure Of Apo- Udp-Glucose Pyrophosp | 1e-05 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 4e-05 | ||
| 1mc3_A | 296 | Crystal Structure Of Rffh Length = 296 | 4e-04 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 5e-04 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 6e-04 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 7e-04 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 7e-04 |
| >pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401 | Back alignment and structure |
|
| >pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose Pyrophosphorylase Length = 281 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 79/368 (21%), Positives = 135/368 (36%), Gaps = 79/368 (21%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFYEEREF 65
A I+ G G R P++ PK P+ +P++ + I + I ++ + +E
Sbjct: 3 AFILAAG--SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKE- 59
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP--L 123
Y E+ I ++D G+ A+ + + D ++ D+ S +
Sbjct: 60 --YFEKKLKEISI---VTQKDDIKGTGAAILSAKF---NDE---ALIIYGDLFFSNEKEI 108
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
++ N I+ +KV + +G LV D N L EKPE S+LIN G+
Sbjct: 109 CNIITLKEN-----AIIGVKV--SNPKDYGVLVLDNQ-NNLSKIIEKPEIPPSNLINAGI 160
Query: 184 YVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
Y DIF + +S S+R + E LT D ++ +A
Sbjct: 161 YKLNSDIFTYLDKISISERGELE-----------------LT--------DAINLMAKDH 195
Query: 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTK---NATIIGDVYVH 299
++ E +W I P + + L NL+ S + N I G V +
Sbjct: 196 RVKVIEYEGYWMDIGKPWNIIDVNKWAL-------DNLVFSQNLGNVEDNVKIKGKVIIE 248
Query: 300 PSAKIHPTAKENAVVTN-AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358
A+I + +G S IG S ++ TIL E + V V
Sbjct: 249 EDAEIKS----GTYIEGPVYIGKGSEIGPNSYLRPY---------TILVEKNKIGASVEV 295
Query: 359 TNSIVLPN 366
S+++
Sbjct: 296 KESVIMEG 303
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-27
Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 28/195 (14%)
Query: 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGF 59
++ +V A+I+ G GTR RPL+ N PK L + +P++ + I K I ++
Sbjct: 22 KEIRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVG 79
Query: 60 YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
Y + +F + + + + + + + +LY ++ + + +
Sbjct: 80 YLKEQFDYLKE----KYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYLF 131
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI 179
+ RN T + E + LV D ++ + + I
Sbjct: 132 K-------NMFRNDLTRSTYFSVYR--EDCTNEWFLVYGDD-YKVQDIIVDSK---AGRI 178
Query: 180 NCGVYVFTPDIFNAI 194
GV + I
Sbjct: 179 LSGVSFWDAPTAEKI 193
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 9e-24
Identities = 37/258 (14%), Positives = 79/258 (30%), Gaps = 65/258 (25%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEE--R 63
AVI+ G GTR +PKPL +GG ++ + I + Y +
Sbjct: 21 AVILAAG--LGTRLGG----VPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDID 74
Query: 64 EFALYVSSISNELRIPVRYLREDKPH-GSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
F + ++ + +R D+P G+ +L ++ + + L D S
Sbjct: 75 AF------LKDK-GFNYKIVRHDRPEKGNGYSLLVAKNHVEDR----FILTMGDHVYSQ- 122
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCG 182
+ ++ G+ + + ++ + + + D ++ G
Sbjct: 123 --QFIEKAVRGEGVIADREPRF--VDIGEATKIRVE--DGRVAKIGKDLRE--FDCVDTG 174
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
+V IF + + ++ LS +
Sbjct: 175 FFVLDDSIFEHAEKLRD------------------------------REEIPLSEIVKLA 204
Query: 243 QL-YTYETMDFWEQIKTP 259
+L TY + W + T
Sbjct: 205 RLPVTYVDGELWMDVDTK 222
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 7e-21
Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 38/225 (16%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
A+IM GG KGTR + KPL L G+ ++ + +S I++ +
Sbjct: 3 ALIMAGG--KGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP--L 123
Y++S + + + G L E +++ D+ +
Sbjct: 57 KEYINSAYKD--YKNIVVIDTSGKGYIEDLNECIGYFSEP----FLVVSSDLINLKSKII 110
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
++D IK ++ P + L+ +
Sbjct: 111 NSIVDYFYC---------IKAKTPDVEALAVMIPKEK-------YPNPSIDFNGLVPADI 154
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228
V +P + + + N +++ + L+ A L D +
Sbjct: 155 NVVSPKHGYQKEEIMVIDELIFN---INTKDDLKLAEMLLKKDGL 196
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 3e-19
Identities = 52/272 (19%), Positives = 93/272 (34%), Gaps = 73/272 (26%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLV-GFYE-------- 61
AVI+ GG GTR ++ PKP+ +GG+P++ H + ++Y V G +
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIM----KMYSVHGIKDFIICCGYK 58
Query: 62 ----EREFALYVSSIS----------------NELRIPVRYLREDKPHGSAGALYNFRDL 101
+ FA Y +S V + + G L +
Sbjct: 59 GYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEY 118
Query: 102 IMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161
+ + D + +D H+ +G T+ +FG L D
Sbjct: 119 V--KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP----PGRFGAL--DIQA 170
Query: 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATR 221
++ + EKP+ +IN G +V P + + I + +++E
Sbjct: 171 GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDA------------TTWE------- 210
Query: 222 NLTTDFVRLDQDILSPLAGKKQLYTYETMDFW 253
Q+ L LA + +L +E FW
Sbjct: 211 ----------QEPLMTLAQQGELMAFEHPGFW 232
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 9e-14
Identities = 71/398 (17%), Positives = 131/398 (32%), Gaps = 85/398 (21%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
+A ++ GG +G+R + L+ KP GG+ ++ +S +RI + Y+
Sbjct: 12 DAMAYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYK 69
Query: 62 EREFALYVSSISNELRIPVR--------YLREDKPH---GSAGALYNFRDLIMEDNPSHI 110
++ + R R + G+A A+Y D+I P ++
Sbjct: 70 AHSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYM 129
Query: 111 FLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK 170
+L D ML H + G TI ++V A+ FG + + +E++ + EK
Sbjct: 130 VILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK-DEIIDFIEK 188
Query: 171 PETFVSDLINC-------GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223
P N G+YVF EA++ +
Sbjct: 189 PADPPGIPGNEGFALASMGIYVFHTKFL---------------------MEAVRRDAADP 227
Query: 224 TT--DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC--------SGLYLAQF 273
T+ DF + DI+ + + + F + + + A
Sbjct: 228 TSSRDFGK---DIIPYIVEHGKAVAH---RFADSCVRSDFEHEPYWRDVGTIDAYWQANI 281
Query: 274 RLTSP----NLLASGDGTKNATIIGDVYVHPSAKI-HPTAKENAVVTNAIVGWKSSIGRW 328
LT ++ K+ I + P AK H +++V I
Sbjct: 282 DLTDVVPDLDI-----YDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCII--- 333
Query: 329 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 366
A L ++L V + N++VLP+
Sbjct: 334 --------SGAALNRSLLFTGVRANSYSRLENAVVLPS 363
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 64.3 bits (155), Expect = 7e-12
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 14/182 (7%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFA 66
VI + G +RF PK + GQ + H +++ +L + A
Sbjct: 3 VIPMAG--MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTA 60
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGA--LYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
++V + +L I Y+ E A + + + + + + +F
Sbjct: 61 VFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPN 120
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
+ + L + F + + +SDL + G+Y
Sbjct: 121 FVFPDISQH--SDGYLEVFQGGGDNWSFAKPE---HAGSTKVIQTAEKNPISDLCSTGLY 175
Query: 185 VF 186
F
Sbjct: 176 HF 177
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 66/400 (16%), Positives = 138/400 (34%), Gaps = 91/400 (22%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
V+ +I+ GG GTR PL+ KP PLG ++ P+S C +IY++ +
Sbjct: 20 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 77
Query: 62 EREFALYVSSISNELRIPVR----------YLREDKPH---GSAGALYNFRDLIMEDNPS 108
++S + + P G+A A+ + L E
Sbjct: 78 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVL 137
Query: 109 HIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT 168
+L D + + AHR T+ + + + A+ FG + D + ++ +
Sbjct: 138 EYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEGRIIEFA 196
Query: 169 EKPET---------------------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENL 207
EKP+ + + + G+YV ++ +
Sbjct: 197 EKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVI----------------SKDVM 240
Query: 208 RRVSSFEALQSATRNLTTDFVRLDQDIL-SPLAGKKQLYTYETMDFWEQIKTPGMSLKCS 266
L+ DF +++ + ++ Y +WE I T ++
Sbjct: 241 -----LNLLRDKFPG-ANDFGS---EVIPGATSLGMRVQAYLYDGYWEDIGT----IEA- 286
Query: 267 GLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIG 326
Y A +T + ++A I P +K+ +A VT++++G I
Sbjct: 287 -FYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM-----LDADVTDSVIGEGCVI- 339
Query: 327 RWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 366
N K+ +++G + + ++ +S+++
Sbjct: 340 ----------KNCKIHHSVVGLRSCISEGAIIEDSLLMGA 369
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 44/212 (20%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVG 58
+ +++ G GTR R S + PK L L G+ M+ H + A R+ +V
Sbjct: 8 TFPGDTAVLVLAAG--PGTRMR--S-DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVL 62
Query: 59 FYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC 118
++ + A V +++ L + +D+P G+ A+ + +D ++ + + D
Sbjct: 63 GHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDT- 121
Query: 119 CSFPL--PE----MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTE--- 169
PL + ++ HR T+L + + +G ++ D +E++ E
Sbjct: 122 ---PLLDADTLADLIATHRAVSAAVTVLT--TTLDDPFGYGRILRTQD-HEVMAIVEQTD 175
Query: 170 -KPETFVSDLINCGVYVF-TPDIFNAIQGVSS 199
P +N GVY F + +A+ +SS
Sbjct: 176 ATPSQREIREVNAGVYAFDIAALRSALSRLSS 207
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 6e-09
Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 46/220 (20%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIY 55
A+I+ G KGTR + S ++PK L + G M+ H + +
Sbjct: 4 SHHHHHHSNFAIILAAG--KGTRMK--S-DLPKVLHKVAGISMLEHVFRSVGAIQPEKTV 58
Query: 56 LV-GFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
V G E + L ++ + + G+ A+ ++ E H ++
Sbjct: 59 TVVGHKAEL--------VEEVLAGQTEFVTQSEQLGTGHAVMMTEPIL-EGLSGHTLVIA 109
Query: 115 CDVCCSFPL--PE----MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-----E 163
D PL E ++D H N+ + TIL ++ +G +V + + E
Sbjct: 110 GDT----PLITGESLKNLIDFHINHKNVATILT--AETDNPFGYGRIVRNDNAEVLRIVE 163
Query: 164 LLHYTEK---PETFVSDLINCGVYVF-TPDIFNAIQGVSS 199
+K IN G YVF +F A++ +++
Sbjct: 164 -----QKDATDFEKQIKEINTGTYVFDNERLFEALKNINT 198
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 27/139 (19%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFAL 67
+ A+++ GG K K L P G+PMV + A +
Sbjct: 2 RPSAIVLAGG--KEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAA---------GLSP 49
Query: 68 YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL--PE 125
+ L D+ +E + + D+ P E
Sbjct: 50 VYVGENPGLVPAPALTLPDRGGLLENLE-----QALEHVEGRVLVATGDI----PHLTEE 100
Query: 126 ----MLDAHRNYGGMGTIL 140
+LD + I+
Sbjct: 101 AVRFVLDKAPEAALVYPIV 119
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-05
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 69 VSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIF--LLNCDVCCSFP-LPE 125
+ ++ ++ + +DKP G A+ ++ +D+ +L D+ +
Sbjct: 98 IRRAADLIKA--VPVTQDKPLGLGHAVGLAESVL-DDDEDV-VAVMLPDDLVLPTGVMER 153
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFG-----ELVADPDTNELLHYTEKP--ETFVSDL 178
M +GG + ++VS S++G D D ++ EKP E S L
Sbjct: 154 MAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRL 212
Query: 179 INCGVYVFTPDIFNAI 194
G Y+ IF+A+
Sbjct: 213 AATGRYLLDRKIFDAL 228
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
+ A I+ GG KGTR ++++PK PL G+P++ H + +I + E
Sbjct: 3 LIYAQILAGG--KGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKE 58
Query: 62 EREFA 66
A
Sbjct: 59 WMNHA 63
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 39/237 (16%), Positives = 66/237 (27%), Gaps = 61/237 (25%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG--GQPMVHHPISACKRIYLVGFYEE--R 63
K ++ G G+R+ K L +G G ++ + + R
Sbjct: 5 KPTLFVLAAG--MGSRYG-----SLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRH 57
Query: 64 EFALYV-SSISNEL--RIPVRYL---------------REDKPHGSAGALYNFRDLIMED 105
F I + RIPV + +KP G+ A+ RD I E
Sbjct: 58 SFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIRE- 116
Query: 106 NPSHIFLLNCD----VCCSFPLPEMLDAHRNYGGM----GTILVIKVSAESASQFGELVA 157
++N D L L G G + +S G
Sbjct: 117 ---PFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQV 173
Query: 158 DPDTNELLHYTEKP-------------------ETFVSDLINCGVYVFTPDIFNAIQ 195
D + + L E+ ++ ++ FTPD F+ +
Sbjct: 174 D-EKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSE 229
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
V +++ GG +G R + ++PK PL GQP+ + K I +V
Sbjct: 4 SVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPF 58
Query: 62 EREFALYVSSISNELRIPVRY 82
R+ + + + +
Sbjct: 59 FRD---IFEEYEESIDVDLSF 76
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
+ AVI+ G KGTR S ++PK L + G+PMV H I ++
Sbjct: 5 ALSAVILAAG--KGTRMY--S-DLPKVLHTIAGKPMVKHVIDTAHQL 46
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
+ VI+ G KGTR S ++PK L PL G+PMV H I A ++
Sbjct: 8 SMSVVILAAG--KGTRMY--S-DLPKVLHPLAGKPMVQHVIDAAMKL 49
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
VA+++ G KG R N+PK + G+ + +P+S + +V E
Sbjct: 13 MNVAILLAAG--KGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRRE 67
Query: 62 EREFA 66
E
Sbjct: 68 WFEVV 72
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 5e-04
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT---EKP--ETFVSD 177
L +M ++ Y + + +V+ E S++G + + + EKP E S+
Sbjct: 142 LKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDAPSN 200
Query: 178 LINCGVYVFTPDIFNAI 194
L G Y+ TPDIF +
Sbjct: 201 LAVIGRYILTPDIFEIL 217
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 6e-04
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT---EKP--ETFVSD 177
L +M+DA+ GG I +V + ++G + L EKP T S+
Sbjct: 151 LKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSN 209
Query: 178 LINCGVYVFTPDIFNAI 194
L G Y+ P++ +
Sbjct: 210 LSVIGRYILQPEVMRIL 226
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI---SACKRIYLVGFYEERE 64
+ +I+ G +G RF K L + P++ I ++I +VG Y
Sbjct: 2 NIGVIILAAG--EGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDLEKIIIVGKYVNEM 54
Query: 65 FAL 67
L
Sbjct: 55 LPL 57
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.98 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.98 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.97 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.97 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.97 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.96 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.95 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.93 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.93 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.93 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.92 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.92 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.9 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.88 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.88 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.86 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.83 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.81 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.78 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.77 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.77 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.76 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.75 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.75 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.74 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.72 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.7 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.67 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.66 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.65 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.63 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.63 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.62 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.6 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.59 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.57 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.54 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.54 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.49 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.47 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.43 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.36 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.35 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.32 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.25 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.02 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.99 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.94 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.92 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.91 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.9 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.9 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.9 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.89 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.89 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.88 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.86 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.86 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.86 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.85 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.85 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.85 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.84 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.83 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.83 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.82 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.79 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.79 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.78 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.78 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.78 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.78 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.78 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.77 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.77 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.77 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.77 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.77 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.76 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.76 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.75 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.75 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.74 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.74 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.73 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.73 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.73 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.73 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.73 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.72 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.72 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.71 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.71 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.71 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.7 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.7 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.7 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.7 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.69 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.69 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.68 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.67 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 98.67 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.66 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.66 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.66 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.65 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.65 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.65 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.63 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.63 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.62 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.62 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.62 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.61 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.61 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.6 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.59 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.59 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.58 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.56 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.56 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 98.55 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.55 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 98.53 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.52 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.52 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.51 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.51 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.49 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.49 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.48 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.44 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.41 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.36 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.36 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.36 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.36 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.32 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.31 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.3 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.29 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.28 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.27 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.26 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.23 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.17 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.14 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.02 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.02 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.0 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 97.93 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.75 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.73 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.72 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.41 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 97.06 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 88.86 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 87.81 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 86.62 |
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=357.90 Aligned_cols=330 Identities=17% Similarity=0.268 Sum_probs=245.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
|+++|+||||||| .|+||+|+|..+||+|+|++|+ |||+|+++.|.+ |+|++.+..+.+.+|+... ++.
T Consensus 9 mm~~~~avILAaG--~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~---~~~ 83 (420)
T 3brk_X 9 LARDAMAYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRG---WDF 83 (420)
T ss_dssp GGGGEEEEEEECC--CCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---SCC
T ss_pred hhhceEEEEEcCC--CCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhh---hcc
Confidence 5567899999999 9999999999999999999999 999999999875 6666665555688888752 221
Q ss_pred -------cEEEec--CC--CC---CChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEe
Q 016989 79 -------PVRYLR--ED--KP---HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 79 -------~i~~~~--~~--~~---~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
.+.+.. +. .+ .|++++++.+++++.....++|++++||++++.++.++++.|.++++++|+++.+.
T Consensus 84 ~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~ 163 (420)
T 3brk_X 84 FRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEV 163 (420)
T ss_dssp CCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEE
T ss_pred ccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeec
Confidence 133322 11 12 79999999999888642235799999999888899999999998888899998876
Q ss_pred CCCCCCceeEEEEeCCCCcEEEeeecCCCcc-------cceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhh
Q 016989 145 SAESASQFGELVADPDTNELLHYTEKPETFV-------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEAL 216 (379)
Q Consensus 145 ~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~-------~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~ 216 (379)
+..++..||.+..++ +++|..|.|||.... ..+.++|+|+|++++| +.+.+......+
T Consensus 164 ~~~~~~~~g~v~~d~-~g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~------------- 229 (420)
T 3brk_X 164 PRMEATGFGVMHVNE-KDEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTS------------- 229 (420)
T ss_dssp ETTGGGGSEEEEECT-TSBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------------
T ss_pred CccccCcccEEEECC-CCcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCc-------------
Confidence 545677999998884 789999999986543 6799999999999986 566543321110
Q ss_pred hhhccccccccccccccccccccCCceEEEEEc-----------ccchhhcCCccchhhcchHHHHhhhhcC---Cc--c
Q 016989 217 QSATRNLTTDFVRLDQDILSPLAGKKQLYTYET-----------MDFWEQIKTPGMSLKCSGLYLAQFRLTS---PN--L 280 (379)
Q Consensus 217 ~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~-----------~~~w~~i~t~~d~~~a~~~~l~~~~~~~---~~--~ 280 (379)
..+| ..++++.++++.++++|.+ +++|.++|||++|+++++.++.++.... +. +
T Consensus 230 -------~~~~---~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i 299 (420)
T 3brk_X 230 -------SRDF---GKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPI 299 (420)
T ss_dssp -----------------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCC
T ss_pred -------cccc---hHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCce
Confidence 1112 1577887776669999999 8899999999999999987765432111 00 1
Q ss_pred ccCCCCCCCeEEec-----CeEECCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECC
Q 016989 281 LASGDGTKNATIIG-----DVYVHPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 354 (379)
Q Consensus 281 ~~~~~~~~~~~i~~-----~~~i~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~ 354 (379)
.......+.+.+++ .+.+ +++.|+++|+ .++.|.+|+||++|.||++|.|.+ |+||++|.||+
T Consensus 300 ~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~----------~~i~~~~~i~~ 368 (420)
T 3brk_X 300 WTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCIISGAALNRSLLFTGVRANSYSRLEN----------AVVLPSVKIGR 368 (420)
T ss_dssp CCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEEESCEEESCEECTTCEECTTCEEEE----------EEECTTCEECT
T ss_pred eeccccCCCcEEecccccCCcEe-cCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcc----------eEEcCCCEECC
Confidence 11112234555554 1111 1444444444 455788999999999999999987 99999999999
Q ss_pred CcEEeccEECCCceeccccc
Q 016989 355 EVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 355 ~~~i~~~ii~~~~~i~~~~~ 374 (379)
+|.|.+|+||+++.|++++.
T Consensus 369 ~~~i~~~~ig~~~~i~~~~~ 388 (420)
T 3brk_X 369 HAQLSNVVIDHGVVIPEGLI 388 (420)
T ss_dssp TCEEEEEEECTTCEECTTCE
T ss_pred CCEEeceEECCCCEECCCCE
Confidence 99999999999999998864
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=339.75 Aligned_cols=327 Identities=20% Similarity=0.335 Sum_probs=223.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhc-ccCC--
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSIS-NELR-- 77 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~-~~~~-- 77 (379)
++|+||||||| .|+||+|||..+||+|+|++|+ |||+|+++.|.+ |+|++.+..+.+.+++.... ..++
T Consensus 19 ~~~~avILAaG--~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~ 96 (451)
T 1yp2_A 19 RSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 96 (451)
T ss_dssp HHEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred cceEEEEECCC--CCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhcccccc
Confidence 45899999999 9999999999999999999999 999999999865 66666655556888876421 0111
Q ss_pred -----ccEEEecC-----CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCC
Q 016989 78 -----IPVRYLRE-----DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (379)
Q Consensus 78 -----~~i~~~~~-----~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~ 147 (379)
+++....+ +...|++++++.+++++.....++|++++||++++.++.++++.|.++++++|+++.+.+..
T Consensus 97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~ 176 (451)
T 1yp2_A 97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK 176 (451)
T ss_dssp --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChh
Confidence 22322211 22589999999999988632235799999999888899999999998888899988877433
Q ss_pred CCCceeEEEEeCCCCcEEEeeecCCCc---------------------ccceeeeeEEEeCHhhH-HHhhccccccccch
Q 016989 148 SASQFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRE 205 (379)
Q Consensus 148 ~~~~~g~v~~d~~~~~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~ 205 (379)
++..||++..|+ +++|..|.|||... ...++++|+|+|++++| +.+.+..+.
T Consensus 177 ~~~~~g~v~~d~-~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~----- 250 (451)
T 1yp2_A 177 RATAFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG----- 250 (451)
T ss_dssp HHTTSEEEEECT-TSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT-----
T ss_pred hcccCCEEEECC-CCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc-----
Confidence 567899998884 78999999998632 25688999999999987 555543111
Q ss_pred hhhhcchhhhhhhhccccccccccccccccccccCC-ceEEEEEcccchhhcCCccchhhcchHHHHhhhh----cCCc-
Q 016989 206 NLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRL----TSPN- 279 (379)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~----~~~~- 279 (379)
..++. .++++.++++ .++++|.++++|.++|||++|.++++.++.+... ..+.
T Consensus 251 ------------------~~~~~---~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~ 309 (451)
T 1yp2_A 251 ------------------ANDFG---SEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSA 309 (451)
T ss_dssp ------------------CCCTT---TTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSS
T ss_pred ------------------ccchH---hhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCC
Confidence 11221 5667666554 7899999999999999999999998777654310 0010
Q ss_pred -cccCCCCCCCeEEecCeEECCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCC--------
Q 016989 280 -LLASGDGTKNATIIGDVYVHPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEA-------- 349 (379)
Q Consensus 280 -~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~-------- 349 (379)
+.......+++.| +++.| .++.|+++|+ ..+.|.+++||++|.||++|.|.++ ++..+
T Consensus 310 ~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~----------~~~~~~~~~~~~~ 377 (451)
T 1yp2_A 310 PIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDS----------LLMGADYYETDAD 377 (451)
T ss_dssp CCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESC----------EECCCSSCCCHHH
T ss_pred eeccCCccCCCeEE-cceEE-eCeEECCCCEEcceEEeccEECCCCEECCCCEEcCc----------eEECCCCcccccc
Confidence 1111112244443 33333 2345555544 2256778999999999999999874 33333
Q ss_pred -----------cEECCCcEEeccEECCCceeccccc
Q 016989 350 -----------VGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 350 -----------~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+.||++|.|.+|+||+++.||+++.
T Consensus 378 ~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~ 413 (451)
T 1yp2_A 378 RKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVK 413 (451)
T ss_dssp HHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCE
T ss_pred cccccccCceeEEECCCCEEeccEeCCCcEECCCCE
Confidence 6666666666666666666665543
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=333.22 Aligned_cols=334 Identities=16% Similarity=0.233 Sum_probs=227.9
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCcc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
+...+.+|||||| +||||+|+| ||||+||+|||||+|+|+.|.+ |+|++.+..+.+++|+++..+.++.+
T Consensus 9 ~~~~~~vvILAaG--~GtRm~~~~---pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~ 83 (501)
T 3st8_A 9 FPGDTAVLVLAAG--PGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRT 83 (501)
T ss_dssp ---CEEEEEEECS--CCGGGCCSS---CGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSC
T ss_pred CCCCceEEEECCc--CcccCCCCC---CHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCc
Confidence 3456899999999 999999954 9999999999999999999986 55555555567999998766678889
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+.|+.|++++||++|++++++++.++..+.+++++||.++ ...+.++++.|+..++++++++.+. .+|..||.+..
T Consensus 84 i~~~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~--~dp~~yG~i~~ 161 (501)
T 3st8_A 84 IDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTL--DDPFGYGRILR 161 (501)
T ss_dssp CEEEECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeecc--CCchhcccccc
Confidence 9999999999999999999999987656789999999977 4568999999999999999999987 48999999999
Q ss_pred eCCCCcEEEeeecCCC----cccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccccccccc
Q 016989 158 DPDTNELLHYTEKPET----FVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (379)
++ +++|..+.|||+. ...+++++|+|+|+++.|. .+......+.++++ |+ .
T Consensus 162 ~~-~g~v~~ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~--yl---------------------t 217 (501)
T 3st8_A 162 TQ-DHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL--YL---------------------T 217 (501)
T ss_dssp CT-TCCEEEEECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC--CT---------------------T
T ss_pred cc-ceeEEeeccccCCChhhccceeeeceeeeecchhHHHhhhhhccccccccc--ch---------------------h
Confidence 85 8999999998653 3467899999999988764 55555555555554 33 3
Q ss_pred ccccccc-CCceEEEEEcccchhhcCCccchhhc--chHHHHhhh----h-----cCCccc-cC--------CCCCCCeE
Q 016989 233 DILSPLA-GKKQLYTYETMDFWEQIKTPGMSLKC--SGLYLAQFR----L-----TSPNLL-AS--------GDGTKNAT 291 (379)
Q Consensus 233 d~l~~l~-~~~~v~~~~~~~~w~~i~t~~d~~~a--~~~~l~~~~----~-----~~~~~~-~~--------~~~~~~~~ 291 (379)
+++..+. .+..+.++.....|...+.......+ ...+..+.. . ..+... .. ..+.+++.
T Consensus 218 d~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~ 297 (501)
T 3st8_A 218 DVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQ 297 (501)
T ss_dssp HHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEE
T ss_pred hHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceee
Confidence 4444433 34677888887777766555433322 222211111 0 111100 00 01134555
Q ss_pred EecCeEECCCcEECCCCC-----------------------CCcEEe-ceEECCCCEECCCcEEeecccccccccceEEC
Q 016989 292 IIGDVYVHPSAKIHPTAK-----------------------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILG 347 (379)
Q Consensus 292 i~~~~~i~~~~~i~~~~~-----------------------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~ 347 (379)
+.+.+.++.++.+++++. .++.++ .+.+++++.|+++++|++ .+++++|+||
T Consensus 298 i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~----~v~ik~s~Ig 373 (501)
T 3st8_A 298 LLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGA----FVEVKNSTIG 373 (501)
T ss_dssp EETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEE----TEEEESCEEC
T ss_pred ecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCC----eEEEccceec
Confidence 555555556666555554 122222 233333333333333333 2455667777
Q ss_pred CCcEECCCcEEeccEECCCceecccc
Q 016989 348 EAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 348 ~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++|+|++.+.+.+|+||++|.||+++
T Consensus 374 ~gskI~~~~~i~d~~Ig~~v~IG~g~ 399 (501)
T 3st8_A 374 TGTKVPHLTYVGDADIGEYSNIGASS 399 (501)
T ss_dssp TTCEEEESCEEESEEECSSCEECTTC
T ss_pred CCcEEeccceecCceEcCCCEECCCE
Confidence 77776666666666666666666654
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=310.33 Aligned_cols=305 Identities=21% Similarity=0.340 Sum_probs=214.6
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++.|.+ ++|++.+. +.+++..... ++.++
T Consensus 1 m~aiIlA~G--~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~----~i~~~ 71 (401)
T 2ggo_A 1 MKAFILAAG--SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK----EISIV 71 (401)
T ss_dssp CEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT----TCEEE
T ss_pred CeEEEEcCc--CccccCcccCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC----cEEEE
Confidence 589999999 9999999999999999999999999999999865 66665543 6666654211 34445
Q ss_pred cCCC-CCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--CChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 84 REDK-PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 84 ~~~~-~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
.++. ..|++++++.+.+ .+++++++||+++. .+++++++ .++.++++.+.. ++..|+.+..++
T Consensus 72 ~~~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~--~~~~~~~v~~~~- 137 (401)
T 2ggo_A 72 TQKDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS--NPKDYGVLVLDN- 137 (401)
T ss_dssp ECCTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS--CCSSSCEEEECT-
T ss_pred eCCCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC--CCcceeEEEECC-
Confidence 4554 6788888887654 24699999999995 56777765 355778777763 566788888874
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
++++..+.|||..+...+.++|+|+|++++|+.+........ ++ .++ .++++.+..
T Consensus 138 ~g~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~-~~-------------------~~~----~~~~~~~~~ 193 (401)
T 2ggo_A 138 QNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISER-GE-------------------LEL----TDAINLMAK 193 (401)
T ss_dssp TSSEEEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCCSS-SC-------------------BCH----HHHHHHHHH
T ss_pred CCeEEEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcCCC-Cc-------------------eEH----HHHHHHHHC
Confidence 689999999987777889999999999999988764321110 00 111 456665522
Q ss_pred CceEEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCCCCCCCeEEecCeEECCCcEECCCCC--------CCc
Q 016989 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAK--------ENA 312 (379)
Q Consensus 241 ~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~--------~~~ 312 (379)
+.++.++..+++|.+++||+||.+++++++.++.. + ......++++.+.+++.|++++.|++++. ++|
T Consensus 194 g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~--~--~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~ 269 (401)
T 2ggo_A 194 DHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVF--S--QNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGS 269 (401)
T ss_dssp HSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCC--C--EECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTC
T ss_pred CCcEEEEEecceEEcCCCHHHHHHHHHHHHHhccc--c--cccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCC
Confidence 35899999988999999999999999888766431 1 11122334455555555555555554443 222
Q ss_pred ------EEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 313 ------VVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 313 ------~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
.|. +++||++|.||++|.| ++|+|++++.|++++.|.+|+||+++.|+.++.
T Consensus 270 ~I~~~~~i~~~~~Ig~~~~ig~~~~i----------~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~ 328 (401)
T 2ggo_A 270 EIGPNSYLRPYTILVEKNKIGASVEV----------KESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTL 328 (401)
T ss_dssp EECSSCEECTTEEECSSCEEEETCEE----------ESEEECTTCEEEESCEEESCEECTTCEECTTCE
T ss_pred EECCCCEEcCCcEECCCCEECCCCEE----------ecCEEcCCcEECCCceEcceEECCCcEECCCcE
Confidence 333 3444444444444444 348888888888888888888888888887765
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=308.98 Aligned_cols=226 Identities=19% Similarity=0.340 Sum_probs=173.5
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
.-+||||||| .|+||++ .+||+|+|++|+|||+|+++.|.+ |+|++.+..+.+.+++.. .+.+
T Consensus 11 ~~~~vIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~-------~i~~ 78 (468)
T 1hm9_A 11 SNFAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-------QTEF 78 (468)
T ss_dssp CEEEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS-------SSEE
T ss_pred CCcEEEEcCC--CCccCCC---CCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC-------CcEE
Confidence 3489999999 9999997 789999999999999999999875 666665554456555432 3445
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
+.++...|++++++.+++++... .+.+++++||+++ +.+++++++.|.+.++++++++.+. .++..|+.+..++
T Consensus 79 v~~~~~~G~~~sl~~a~~~~~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~--~~~~~~g~v~~d~- 154 (468)
T 1hm9_A 79 VTQSEQLGTGHAVMMTEPILEGL-SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRND- 154 (468)
T ss_dssp EECSSCCCHHHHHHTTHHHHTTC-CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEECT-
T ss_pred EeCCccCChHHHHHHHHHHhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEecc--CCCCceeEEEECC-
Confidence 55667789999999999988631 3579999999975 6789999999988888888888776 3667899888874
Q ss_pred CCcEEEeeecCC----CcccceeeeeEEEeCHh-hHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccc
Q 016989 161 TNELLHYTEKPE----TFVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (379)
Q Consensus 161 ~~~v~~~~ekp~----~~~~~~~~~Giy~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (379)
+++|..+.|||. .....+.++|+|+|+++ +++.+.+.......++ ++ + .|++
T Consensus 155 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~---------------------~~-~-~d~~ 211 (468)
T 1hm9_A 155 NAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGE---------------------YY-I-TDVI 211 (468)
T ss_dssp TCCEEEEECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCS---------------------CC-T-THHH
T ss_pred CCCEEEEEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCe---------------------EE-H-HHHH
Confidence 789999999864 23467899999999998 4577665432211111 11 1 6777
Q ss_pred ccccC-CceEEEEEcccchhhc--CCccchhhcchHHHHh
Q 016989 236 SPLAG-KKQLYTYETMDFWEQI--KTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 236 ~~l~~-~~~v~~~~~~~~w~~i--~t~~d~~~a~~~~l~~ 272 (379)
+.+++ +.++++|.++++|.++ +||+||.+++.++..+
T Consensus 212 ~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~ 251 (468)
T 1hm9_A 212 GIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 251 (468)
T ss_dssp HHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHH
Confidence 77765 4689999999999885 5999999998776554
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=298.37 Aligned_cols=312 Identities=20% Similarity=0.263 Sum_probs=216.9
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.||||||| .|+||++ .+||+|+|++|+|||+|+++.|.+ ++|++.+..+.+++++.. .+ +.
T Consensus 7 ~~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~----~~--~~ 75 (459)
T 4fce_A 7 SSMSVVILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD----PS--LN 75 (459)
T ss_dssp CCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----------C
T ss_pred CcceEEEECCC--CCccCCC---CCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc----CC--cE
Confidence 47999999999 9999998 889999999999999999999975 666666555567777653 22 33
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++.. .+++++++||.++ +.+++++++.|.+ .++++++.+. .++..|+.+..+
T Consensus 76 ~v~~~~~~g~~~~i~~~~~~~~~--~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~--~~~~~~g~v~~~- 148 (459)
T 4fce_A 76 WVLQAEQLGTGHAMQQAAPHFAD--DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKL--DNPSGYGRIVRE- 148 (459)
T ss_dssp EEECSSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEEC--SCCTTSCEEEEE-
T ss_pred EEeCCCCCCcHHHHHHHHHhcCC--CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEec--CCCCcccEEEeC-
Confidence 44466778999999999998863 2579999999976 6779999998765 4567777665 467889988887
Q ss_pred CCCcEEEeeecCC----CcccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPE----TFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~----~~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
++++..+.|||. .....+.++|+|+|+++.+ +++........++++ + + .|+
T Consensus 149 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~---------------------~-~-~d~ 204 (459)
T 4fce_A 149 -NGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEF---------------------Y-I-TDI 204 (459)
T ss_dssp -TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSC---------------------C-T-THH
T ss_pred -CCcEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcE---------------------E-H-HHH
Confidence 689999999853 3456789999999998865 666544322111111 1 1 566
Q ss_pred cccccC-CceEEEEEcccch--hhcCCccchhhcchHHHHhhhh--c-------CCccc---------cCCCCCCCeEEe
Q 016989 235 LSPLAG-KKQLYTYETMDFW--EQIKTPGMSLKCSGLYLAQFRL--T-------SPNLL---------ASGDGTKNATII 293 (379)
Q Consensus 235 l~~l~~-~~~v~~~~~~~~w--~~i~t~~d~~~a~~~~l~~~~~--~-------~~~~~---------~~~~~~~~~~i~ 293 (379)
++.+.+ +.++.++..+++| .+++||+||..+++++..++.. . .|... ....+.+++.|.
T Consensus 205 ~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~ 284 (459)
T 4fce_A 205 IALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIE 284 (459)
T ss_dssp HHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEE
T ss_pred HHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeec
Confidence 666654 4689999998777 5689999999998776654421 0 11000 000112444444
Q ss_pred cCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 294 GDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+++.||+++.|++ ++.|.+++||++|.|+++|.|.+ ++||++|.||++|.|. +++|++++.||++
T Consensus 285 ~~~~ig~~~~I~~----~~~i~~~~Ig~~~~I~~~~~i~~----------~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~ 350 (459)
T 4fce_A 285 GHVILGDRVRIGT----GCVLKNCVIGDDSEISPYTVLED----------ARLDANCTVGPFARLRPGAELAEGAHVGNF 350 (459)
T ss_dssp EEEEECTTCEECT----TCEEESCEECTTCEECSSCEEES----------CEECTTCEECSSEEECTTCEECTTCEEEEE
T ss_pred cceEECCCCEECC----CCEEeccEECCCCEECCCcEEeC----------CEECCCCEECCccEECCCcEECCCcEECCC
Confidence 4444455555553 34566677777777777777654 7777777777777775 7777777777765
Q ss_pred cc
Q 016989 373 VH 374 (379)
Q Consensus 373 ~~ 374 (379)
+.
T Consensus 351 ~~ 352 (459)
T 4fce_A 351 VE 352 (459)
T ss_dssp EE
T ss_pred eE
Confidence 53
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=292.40 Aligned_cols=311 Identities=18% Similarity=0.258 Sum_probs=211.6
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.||||||| .|+||++ .+||+|+|++|+|||+|+++.|.. ++|++.+..+.+.+++... .+.
T Consensus 4 ~~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~------~~~ 72 (456)
T 2v0h_A 4 KALSAVILAAG--KGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE------QVN 72 (456)
T ss_dssp CCEEEEEECCC--CCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC------CCE
T ss_pred CcceEEEECCC--CCcccCC---CCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC------CcE
Confidence 56899999999 9999987 789999999999999999999865 6666665545577766531 244
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++.. .+++++++||+++ +.+++++++.|.+ +++++++.+.. ++..|+.+..+
T Consensus 73 ~v~~~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~--~~~~~g~v~~~- 145 (456)
T 2v0h_A 73 WVLQTEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLD--NPTGYGRIIRE- 145 (456)
T ss_dssp EEECSCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS--SCTTSCEEEEE-
T ss_pred EEeCCCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecC--CCCccceEEEc-
Confidence 55566788999999999988853 2579999999976 6789999998865 56777776653 56778888776
Q ss_pred CCCcEEEeeecCCC----cccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPET----FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
++++..+.|||.. ....+.++|+|+|+++. ++.+........++++ + + .++
T Consensus 146 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~---------------------~-~-~d~ 201 (456)
T 2v0h_A 146 -NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEY---------------------Y-L-TDL 201 (456)
T ss_dssp -TTEEEEEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCC---------------------C-G-GGH
T ss_pred -CCcEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccE---------------------E-H-HHH
Confidence 6799999998652 23578899999999875 5666543321111111 1 1 566
Q ss_pred cccccC-CceEEEEEcccch--hhcCCccchhhcchHHHHhhhh--cCCcc--cc--------------CCCCCCCeEEe
Q 016989 235 LSPLAG-KKQLYTYETMDFW--EQIKTPGMSLKCSGLYLAQFRL--TSPNL--LA--------------SGDGTKNATII 293 (379)
Q Consensus 235 l~~l~~-~~~v~~~~~~~~w--~~i~t~~d~~~a~~~~l~~~~~--~~~~~--~~--------------~~~~~~~~~i~ 293 (379)
++.+.. +.++.++..+++| .+++||+||.++++++..+... ..+.. .. ...+.+++.|.
T Consensus 202 ~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~ 281 (456)
T 2v0h_A 202 IALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIE 281 (456)
T ss_dssp HHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEE
T ss_pred HHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEc
Confidence 666654 4689999987654 5889999999998766543210 00000 00 00011233333
Q ss_pred cCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 294 GDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+++.||+++.|+ +++.|.+++||++|.|+++|.|.+ ++||++|.|++++.|. +++||+++.||++
T Consensus 282 ~~~~Ig~~~~I~----~~~~i~~~~ig~~~~I~~~~~i~~----------~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~ 347 (456)
T 2v0h_A 282 GNVKLGDRVKIG----TGCVLKNVVIGNDVEIKPYSVLED----------SIVGEKAAIGPFSRLRPGAELAAETHVGNF 347 (456)
T ss_dssp EEEEECTTCEEC----TTCEEEEEEECTTCEECSSCEEEE----------EEECTTCEECSSEEECTTCEECTTCEEEEE
T ss_pred CCcEECCCCEEC----CCCEEEeEEEeCCCEEcCCeEEcc----------CcCCCCcEECCccEECCCCEECCCCEECCC
Confidence 333333333333 344566666677777766666655 7777777777777775 6677777776665
Q ss_pred c
Q 016989 373 V 373 (379)
Q Consensus 373 ~ 373 (379)
+
T Consensus 348 ~ 348 (456)
T 2v0h_A 348 V 348 (456)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=269.48 Aligned_cols=234 Identities=22% Similarity=0.350 Sum_probs=190.2
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc---c----
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---E---- 75 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~---~---- 75 (379)
.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+|+....+ .
T Consensus 2 ~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 79 (281)
T 3juk_A 2 IKKCLFPAAG--YGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT 79 (281)
T ss_dssp CCEEEEECCS--CCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred ceEEEEECCc--CCcccCccccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence 4799999999 9999999999999999999999999999999976 666666555678888764210 0
Q ss_pred -------------CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-----hHHHHHHHHhcCCce
Q 016989 76 -------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-----LPEMLDAHRNYGGMG 137 (379)
Q Consensus 76 -------------~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-----l~~~l~~~~~~~~~~ 137 (379)
++.++.++.++...|++++++.+++++.+ ++|++++||++++.+ ++++++.|.+.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~---~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~ 155 (281)
T 3juk_A 80 NKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGN---EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-S 155 (281)
T ss_dssp CHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHCS---SCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-C
T ss_pred cchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcCC---CCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-C
Confidence 34677778788889999999999999864 369999999988777 9999999988777 7
Q ss_pred EEEEEEeCCCCCCceeEEEEeC-CCC--cEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcch
Q 016989 138 TILVIKVSAESASQFGELVADP-DTN--ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSS 212 (379)
Q Consensus 138 ti~~~~~~~~~~~~~g~v~~d~-~~~--~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 212 (379)
++++...+..++.+||.+..++ .++ +|..|.|||. ...++++++|+|+|++++|+.+.+..++ .++++
T Consensus 156 ~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~-~~~e~------ 228 (281)
T 3juk_A 156 IVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPG-KNNEI------ 228 (281)
T ss_dssp EEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCC-GGGSC------
T ss_pred EEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCC-CCCce------
Confidence 7888777656789999988872 046 9999999986 4567899999999999999988764321 11111
Q ss_pred hhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 213 FEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
. + .++++.+.++.++.+|.++++|.++|||++|.+|+..++.
T Consensus 229 ---------------~-l-~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~ 270 (281)
T 3juk_A 229 ---------------Q-I-TDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYK 270 (281)
T ss_dssp ---------------C-H-HHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHH
T ss_pred ---------------e-H-HHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHh
Confidence 1 1 6777777766799999999999999999999999977764
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=260.86 Aligned_cols=231 Identities=21% Similarity=0.343 Sum_probs=191.1
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccc-hHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYE-EREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~-~~~i~~~l~~~~~~~~~~ 79 (379)
.+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++... ...+.+++.. ...++++
T Consensus 22 ~~~m~aiIlAaG--~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~-~~~~~~~ 98 (269)
T 4ecm_A 22 SNAMKGIILAGG--TGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS-GQEFGVS 98 (269)
T ss_dssp --CEEEEEECCS--CCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCE
T ss_pred ccCcEEEEECCC--CccccccccCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh-ccccCce
Confidence 356899999999 9999999999999999999999999999999975 66666542 3457788764 2356778
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
+.+..+....|++++++.+++++.. +++++++||+++..++.++++.|.++++++++++.+.. ++..||.+..+
T Consensus 99 i~~~~~~~~~G~~~al~~a~~~~~~---~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d- 172 (269)
T 4ecm_A 99 FTYRVQDKAGGIAQALGLCEDFVGN---DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVD--DPERFGVANIQ- 172 (269)
T ss_dssp EEEEECSSCCCHHHHHHTTHHHHTT---SEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECS--CGGGSEEEEEE-
T ss_pred EEEeeCCccCcHHHHHHHHHHhcCC---CcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECC--CCCCceEEEEc-
Confidence 8887777889999999999998863 47999999999999999999999988888999888764 67889999887
Q ss_pred CCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 239 (379)
+++|..+.|||..+...++++|+|+|++++|+.+.+..+.. +++ +. + .++++.+.
T Consensus 173 -~g~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~-~ge---------------------~~-l-~d~l~~l~ 227 (269)
T 4ecm_A 173 -NRKIIEIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSA-RGE---------------------LE-I-TDINNWYL 227 (269)
T ss_dssp -TTEEEEEEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCT-TSC---------------------BC-H-HHHHHHHH
T ss_pred -CCEEEEEEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCC-CCe---------------------ee-H-HHHHHHHH
Confidence 48999999999877788999999999999998887654321 111 11 1 67777777
Q ss_pred CCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 240 ~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+..++.++..+++|.++|||++|.+|++.++
T Consensus 228 ~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~ 258 (269)
T 4ecm_A 228 KRGVLTYNEMSGWWTDAGTHVSLQRANALAR 258 (269)
T ss_dssp HTTCEEEEECCSCEEECSSHHHHHHHHHHTT
T ss_pred HcCCEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 6668999999999999999999999987654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=257.66 Aligned_cols=237 Identities=21% Similarity=0.291 Sum_probs=183.0
Q ss_pred CCCCCCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc-
Q 016989 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN- 74 (379)
Q Consensus 1 m~~~~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~- 74 (379)
|.++|++.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+|+.....
T Consensus 1 ~~~~~~~~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l 78 (302)
T 2e3d_A 1 MAAINTKVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFEL 78 (302)
T ss_dssp ----CCSCCEEEEECCS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHH
T ss_pred CcchhhcccEEEEECCc--CcccCCccccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhh
Confidence 77788888999999999 9999999999999999999999999999999865 666666555668888764110
Q ss_pred --------------------cCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-----C---ChHHH
Q 016989 75 --------------------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-----F---PLPEM 126 (379)
Q Consensus 75 --------------------~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-----~---dl~~~ 126 (379)
..+.++.++.+....|++++++.+++++.+ ++|++++||++++ . +++++
T Consensus 79 ~~~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~~---~~~lv~~~D~~~~~~~~~~~~~~l~~l 155 (302)
T 2e3d_A 79 EAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEM 155 (302)
T ss_dssp HHHHC----CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHCS---SCEEEECTTEEECTTSSCTTTSTHHHH
T ss_pred hhhhhhccchhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcCC---CcEEEEcCCccccCccccchHHHHHHH
Confidence 135667777777889999999999998853 3699999999996 2 79999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC---CCC---cEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccc
Q 016989 127 LDAHRNYGGMGTILVIKVSAESASQFGELVADP---DTN---ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVS 198 (379)
Q Consensus 127 l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~---~~~---~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~ 198 (379)
++.|.+.++ .++++.+. .+++.||.+..+. +++ +|..|.|||. ...+.+.++|+|+|++++|+.+.+..
T Consensus 156 ~~~~~~~~~-~~i~~~~~--~~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~ 232 (302)
T 2e3d_A 156 IRRFDETGH-SQIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTP 232 (302)
T ss_dssp HHHHHHHCC-EEEEEEEC--SCGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCC
T ss_pred HHHHHhcCC-cEEEEEEc--cCCCCccEEEecccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhC
Confidence 999988776 77777765 4678899887631 256 8999999985 44577999999999999998887643
Q ss_pred cccccchhhhhcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 199 SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
++. ++++ + + .++++.++++.++.++.++++|.|+|||++|.+++..+
T Consensus 233 ~~~-~~~~---------------------~-l-~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~ 279 (302)
T 2e3d_A 233 PGA-GDEI---------------------Q-L-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_dssp C-----CC---------------------C-H-HHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHH
T ss_pred CCC-CCce---------------------e-h-HHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHH
Confidence 321 1111 1 1 46666665545999999999999999999999998443
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-32 Score=250.51 Aligned_cols=234 Identities=20% Similarity=0.275 Sum_probs=164.6
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhc--------
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS-------- 73 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~-------- 73 (379)
+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+++....
T Consensus 13 ~~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 90 (297)
T 2ux8_A 13 PLRKAVFPVAG--LGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAA 90 (297)
T ss_dssp CCCEEEEEECC--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHT
T ss_pred CccEEEEECCC--CccccCccccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhh
Confidence 46899999999 9999999999999999999999999999999875 66666655556888775310
Q ss_pred -----------ccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec---CChHHHHHHHHhcCCceEE
Q 016989 74 -----------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS---FPLPEMLDAHRNYGGMGTI 139 (379)
Q Consensus 74 -----------~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~---~dl~~~l~~~~~~~~~~ti 139 (379)
...+.++.++.++...|++++++.+++++.+ ++|++++||++++ .+++++++.|.+.++ .++
T Consensus 91 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~~---~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i 166 (297)
T 2ux8_A 91 RGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGD---EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLI 166 (297)
T ss_dssp TTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHCS---SCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEE
T ss_pred ccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcCC---CcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEE
Confidence 0034667777777889999999999998853 4699999999996 579999999987765 566
Q ss_pred EEEEeCCCCCCceeEEEEeC-CCC--cEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhh
Q 016989 140 LVIKVSAESASQFGELVADP-DTN--ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFE 214 (379)
Q Consensus 140 ~~~~~~~~~~~~~g~v~~d~-~~~--~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 214 (379)
++.+.+..++..||++..++ +++ +|..|.|||. ...+.+.++|+|+|++++|+.+.+..++. +++
T Consensus 167 ~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~-~~~--------- 236 (297)
T 2ux8_A 167 CAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGA-GGE--------- 236 (297)
T ss_dssp EEC-----------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHHHHTC----------------
T ss_pred EEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCC-CCe---------
Confidence 66655434567899876542 144 8999999984 44567899999999999998887543221 111
Q ss_pred hhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 215 ALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
++ + .++++.++++.++.++.++++|.|+|||++|.+++..++
T Consensus 237 ------------~~-l-~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~ 278 (297)
T 2ux8_A 237 ------------IQ-L-TDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVA 278 (297)
T ss_dssp ---------------C-CTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHH
T ss_pred ------------eE-H-HHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHH
Confidence 11 1 577777776679999999999999999999999985554
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-31 Score=246.34 Aligned_cols=230 Identities=20% Similarity=0.309 Sum_probs=183.2
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEc-ccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~-~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+|+||||||| .||||+|+|...||+|+|++|+|||+|+++.+.. |+|++ .+..+.+++++++. ..+++++.
T Consensus 2 ~~~aIILAgG--~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i~ 78 (293)
T 1fxo_A 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDG-SNWGLDLQ 78 (293)
T ss_dssp CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEE
T ss_pred CceEEEECCC--CCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhcc-cccCceEE
Confidence 4799999999 9999999999999999999999999999999875 55444 54555688888753 34677887
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
+..++.+.|++++++.+.+++.+ ++++++.||+++ +.++.++++.|.+.+.+++++..++ .++..||++..|+
T Consensus 79 ~~~~~~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v--~dp~~~g~v~~d~- 152 (293)
T 1fxo_A 79 YAVQPSPDGLAQAFLIGESFIGN---DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFDQ- 152 (293)
T ss_dssp EEECSSCCCGGGHHHHTHHHHTT---SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC--SCGGGSEEEEECT-
T ss_pred EeeCCCCCCHHHHHHHHHHHhCC---CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEEC--CCcccCcEEEECC-
Confidence 87777889999999999998863 368888899998 7789999999977667778877776 3677899998884
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+++|..|.|||..+.+++.++|+|+|++++++.+....++..+ ++ .+ .|+++.+.+
T Consensus 153 ~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~g-e~-------------------~~----td~~~~~l~ 208 (293)
T 1fxo_A 153 GGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRG-EL-------------------EI----TDVNRAYLE 208 (293)
T ss_dssp TSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTS-SC-------------------CH----HHHHHHHHH
T ss_pred CCcEEEEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCC-ce-------------------eH----HHHHHHHHh
Confidence 7899999999977778899999999999999888754332111 11 01 456665655
Q ss_pred CceEEEEEcc-cc-hhhcCCccchhhcchHHH
Q 016989 241 KKQLYTYETM-DF-WEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 241 ~~~v~~~~~~-~~-w~~i~t~~d~~~a~~~~l 270 (379)
..++.++... ++ |.|+|||+||.+|+.++.
T Consensus 209 ~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 209 RGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp TTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 5677777764 65 999999999999987654
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=243.37 Aligned_cols=229 Identities=19% Similarity=0.303 Sum_probs=181.0
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEE-cccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLV-GFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~-~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|++|||||| .||||+|+|...||+|+|++|+|||+|+++.+.. |+|+ +.+..+.+++++++. ..+++++.+
T Consensus 4 m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g-~~~g~~i~~ 80 (295)
T 1lvw_A 4 MKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDG-SQFGVRFSY 80 (295)
T ss_dssp CEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTSEEEE
T ss_pred eEEEEECCC--CCCccccccCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhc-cccCceEEE
Confidence 799999999 9999999999999999999999999999999875 5554 445555688888753 346777777
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
+.++.+.|++++++.+.+++.+ ++++++.||+++ +.++.++++.|.+.+..+++++.++. ++..||++..|+ +
T Consensus 81 ~~~~~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~--dp~~~g~v~~d~-~ 154 (295)
T 1lvw_A 81 RVQEEPRGIADAFIVGKDFIGD---SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR--DPRPFGVVEFDS-E 154 (295)
T ss_dssp EECSSCCCGGGHHHHTHHHHTT---SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS--CCTTSEEEEECT-T
T ss_pred eeCCCCCChHHHHHHHHHHhCC---CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECC--CcccCCEEEECC-C
Confidence 7777788999999999998863 347777799998 77899999999776667788777763 577899999884 7
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|..|.|||..+.+++.++|+|+|++++++.+....++.. +++ ++ +++++.+.+.
T Consensus 155 g~v~~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~-ge~-------------------~~----td~~~~~l~~ 210 (295)
T 1lvw_A 155 GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDR-GEL-------------------EI----TSVNEEYLRM 210 (295)
T ss_dssp SBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTT-SCC-------------------CH----HHHHHHHHHT
T ss_pred CcEEEEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCccc-Cce-------------------eH----HHHHHHHHHc
Confidence 89999999997667789999999999999888765433211 111 11 4555555555
Q ss_pred ceEEEEEcc-cc-hhhcCCccchhhcchHHH
Q 016989 242 KQLYTYETM-DF-WEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 242 ~~v~~~~~~-~~-w~~i~t~~d~~~a~~~~l 270 (379)
.++.++... ++ |.|+|||+||.+|+.++.
T Consensus 211 g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 211 GKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp TCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 566666664 64 999999999999987654
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=245.72 Aligned_cols=229 Identities=20% Similarity=0.277 Sum_probs=181.8
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEc-ccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~-~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|++|||||| .||||+|+|...||+|+|++|+|||+|+++.+.. |+|++ .+..+.+++++.+. ..+++++.+
T Consensus 4 m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i~~ 80 (296)
T 1mc3_A 4 MKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDG-SEFGIQLEY 80 (296)
T ss_dssp CEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEEE
T ss_pred cEEEEECCC--CCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhcc-cccCceEEE
Confidence 689999999 9999999999999999999999999999999875 55544 45555688888752 346777777
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
+.++.+.|++++++.+.+++.+ ++++++.||+++ +.++.++++.|.+.+.+++++..+.. ++..||++..|+ +
T Consensus 81 ~~~~~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~--dp~~yg~v~~d~-~ 154 (296)
T 1mc3_A 81 AEQPSPDGLAQAFIIGETFLNG---EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM--DPERFGVVEFDD-N 154 (296)
T ss_dssp EECSSCCCSTHHHHHTHHHHTT---SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS--CCSSSBBCEEET-T
T ss_pred eccCCCCCHHHHHHHHHHHhCC---CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECC--CcccCCEEEECC-C
Confidence 7777789999999999998863 347777799998 77899999999766667788777763 577899998884 7
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|..|.|||..+.+++.++|+|+|++++++.+....++.. +++ ++ +++++.+.+.
T Consensus 155 g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~-ge~-------------------~~----td~~~~~l~~ 210 (296)
T 1mc3_A 155 FRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSER-GEL-------------------EI----TSINQMYLEA 210 (296)
T ss_dssp EEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSS-SSC-------------------CH----HHHHHHHHHT
T ss_pred CcEEEEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCcccc-CCc-------------------cH----HHHHHHHHhc
Confidence 89999999997777889999999999999988876543211 111 11 4555555555
Q ss_pred ceEEEEEcc-cc-hhhcCCccchhhcchHHH
Q 016989 242 KQLYTYETM-DF-WEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 242 ~~v~~~~~~-~~-w~~i~t~~d~~~a~~~~l 270 (379)
.++.++... ++ |.|+|||++|.+++.++.
T Consensus 211 g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 211 GNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp TCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 567777764 65 999999999999987664
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-31 Score=237.01 Aligned_cols=224 Identities=22% Similarity=0.407 Sum_probs=166.2
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc---cCCc-
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI- 78 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~---~~~~- 78 (379)
.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++.+..+.+++++..... .+.+
T Consensus 2 ~~~avIlAaG--~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (259)
T 1tzf_A 2 ASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CcEEEEECCC--CcccCCCccCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence 4789999999 9999999999999999999999999999999875 666665555668888875321 1111
Q ss_pred ----------------cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEE
Q 016989 79 ----------------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 79 ----------------~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
.+.+..+....|++++++.+++++..+ +++++++||++++.++.++++.|.+.++++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~~--~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~ 157 (259)
T 1tzf_A 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT 157 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTS--SCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCCC--CcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe
Confidence 022233445789999999999988432 46999999998899999999999887777766543
Q ss_pred EeCCCCCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccc
Q 016989 143 KVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (379)
Q Consensus 143 ~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
+ .++.||.+..+ +++|..|.|||... ..+.++|+|+|++++|+.+...
T Consensus 158 ~----~~~~~g~v~~~--~g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~~------------------------- 205 (259)
T 1tzf_A 158 F----PPGRFGALDIQ--AGQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDND------------------------- 205 (259)
T ss_dssp C----CCCCSEEEEEE--TTEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCST-------------------------
T ss_pred c----CCCCccEEEEc--CCEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhccc-------------------------
Confidence 2 46789988887 68999999998653 5689999999999998766321
Q ss_pred cccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 223 LTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 223 ~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
+.++. .++++.+.++.++.++..+++|.++||++||.+++..+..
T Consensus 206 -~~~~~---~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~ 250 (259)
T 1tzf_A 206 -ATTWE---QEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp -TCCTT---THHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred -ccccH---HHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhc
Confidence 01111 4566666655689999999999999999999999876653
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=247.88 Aligned_cols=235 Identities=19% Similarity=0.259 Sum_probs=180.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc-------
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------- 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~------- 74 (379)
+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+++.....
T Consensus 11 ~~~~aVIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~ 88 (323)
T 2pa4_A 11 AVKTVVVPAAG--LGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLME 88 (323)
T ss_dssp -CCEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHH
T ss_pred cceEEEEECCC--CccccCccccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhc
Confidence 45899999999 9999999999999999999999999999999865 666655544557777643100
Q ss_pred -------------cCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--CChHHHHHHHHhcCCceEE
Q 016989 75 -------------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTI 139 (379)
Q Consensus 75 -------------~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--~dl~~~l~~~~~~~~~~ti 139 (379)
..+.++.++.++...|++++++.+++++..+ ++.|++++||++++ .++..+++.|.+.++ .++
T Consensus 89 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~-~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i 166 (323)
T 2pa4_A 89 RGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDD-EDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVL 166 (323)
T ss_dssp TTCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSS-CCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEE
T ss_pred cchhhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCC-CCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEE
Confidence 0245666666777889999999999888532 34599999999996 679999999987665 567
Q ss_pred EEEEeCCCCCCceeEEEEe----CCCC--cEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcc
Q 016989 140 LVIKVSAESASQFGELVAD----PDTN--ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVS 211 (379)
Q Consensus 140 ~~~~~~~~~~~~~g~v~~d----~~~~--~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~ 211 (379)
++.+.+..++..||.+..+ + ++ +|..|.|||. ...+.+.++|+|+|++++|+.+....++. ++++
T Consensus 167 ~~~~~~~~~~~~yg~v~~d~~~~~-~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~-~ge~----- 239 (323)
T 2pa4_A 167 CAVEVSEADVSKYGIFEIEADTKD-SDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGA-GGEL----- 239 (323)
T ss_dssp EEEECCGGGGGGSEEEEEEECCSS-TTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCG-GGCC-----
T ss_pred EEEEecccccCCccEEEeCCcccC-CCceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCC-CCeE-----
Confidence 7666644567899988876 3 43 8999999984 44567899999999999998887543221 1111
Q ss_pred hhhhhhhhccccccccccccccccccccCC-ceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 212 SFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+ + .++++.++++ .++.++.++++|.|||||++|.+++..++
T Consensus 240 ----------------~-l-~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~ 281 (323)
T 2pa4_A 240 ----------------Q-L-TDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFG 281 (323)
T ss_dssp ----------------C-H-HHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHH
T ss_pred ----------------e-H-HHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHh
Confidence 1 1 5677766654 78999999999999999999999985544
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-31 Score=242.56 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=178.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee--CCcchhHHHHHhcCc-----EEEEcccc-hHHHHHHHHhhcccCCc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL--GGQPMVHHPISACKR-----IYLVGFYE-EREFALYVSSISNELRI 78 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi--~g~pli~~~i~~l~~-----iiv~~~~~-~~~i~~~l~~~~~~~~~ 78 (379)
|++++|||||| .|+||+| ||+|+|+ +|+|||+|+++.+.. |+|++.+. .+.+.+|+.+. ..++.
T Consensus 4 m~~~~vIlAaG--~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~~~~ 75 (303)
T 3pnn_A 4 MKPTLFVLAAG--MGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTK-YEGRI 75 (303)
T ss_dssp CCCEEEEECTT--CBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHH-HTTTS
T ss_pred CceEEEEECCC--CcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHH-hccCC
Confidence 46899999999 9999999 8999999 699999999998865 65555554 46788888763 23456
Q ss_pred cEEEecCC---------------CCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHh---cCCceEE
Q 016989 79 PVRYLRED---------------KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN---YGGMGTI 139 (379)
Q Consensus 79 ~i~~~~~~---------------~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~---~~~~~ti 139 (379)
++.++.++ .++||+++++.++++++ ++|+|++||++++.+ ++++++.|.+ +++++++
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~----~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v 151 (303)
T 3pnn_A 76 PVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR----EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCM 151 (303)
T ss_dssp CEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC----SCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEE
T ss_pred cEEEEecccccccccccccccccccCCcHHHHHHHHHhcC----CCEEEEECCeecCHHHHHHHHHHHHHhccccCceEE
Confidence 67776555 57899999999999884 359999999998665 9999999975 5677888
Q ss_pred EEEEeCCCCC-Cce-----eEEEEeCCCCcEEEeeecCCC-------------------cccceeeeeEEEeCHhhHHHh
Q 016989 140 LVIKVSAESA-SQF-----GELVADPDTNELLHYTEKPET-------------------FVSDLINCGVYVFTPDIFNAI 194 (379)
Q Consensus 140 ~~~~~~~~~~-~~~-----g~v~~d~~~~~v~~~~ekp~~-------------------~~~~~~~~Giy~~~~~~l~~l 194 (379)
++.+.. ++ +.| |.+..|+ +++|+.|.|||.. +.++++++|+|+|++++|+.+
T Consensus 152 ~~~~~~--~~~~~~g~~~~G~v~~d~-~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l 228 (303)
T 3pnn_A 152 VGYRVG--NTLSESGGVSRGVCQVDE-KHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYS 228 (303)
T ss_dssp EEEEGG--GSCBTTBCEEEEEEEECT-TSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHH
T ss_pred EEEECC--CccCccCceeeeeEeeCC-CCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHH
Confidence 888774 34 455 6777874 7899999999853 257899999999999999888
Q ss_pred hccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCc--eEEEEEcccchhhcCCccchhhcchHHHHh
Q 016989 195 QGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK--QLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~--~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~ 272 (379)
.+....- +.........+++ + +++++.+++.. ++.+|.++++|.++|||++|.+|++.+...
T Consensus 229 ~~~~~~~--------------l~~~~~~~~~e~~-l-~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~ 292 (303)
T 3pnn_A 229 EELFINF--------------LNAHGQEPKSEFF-I-PFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLREL 292 (303)
T ss_dssp HHHHHHH--------------HHHHTTCSSCCCC-H-HHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHH
T ss_pred HHHHHHH--------------HHhcCCCcCCcEE-h-HHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHH
Confidence 6421000 0000000111222 1 67888776654 899999999999999999999998777544
Q ss_pred h
Q 016989 273 F 273 (379)
Q Consensus 273 ~ 273 (379)
+
T Consensus 293 ~ 293 (303)
T 3pnn_A 293 T 293 (303)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=232.95 Aligned_cols=220 Identities=16% Similarity=0.186 Sum_probs=161.2
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCcc--EEE
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP--VRY 82 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~--i~~ 82 (379)
+|||||| .||||+|+|..+||+|+||+|||||+|+++.+.. +++++.+..+ +.+++.+....++.+ ..+
T Consensus 2 ~iIlAaG--~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (255)
T 4evw_A 2 IVIPMAG--MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIA 78 (255)
T ss_dssp EEEECCS--CCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEE
T ss_pred EEEEcCC--CCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEE
Confidence 7999999 9999999999999999999999999999999864 5544444333 455554432233322 134
Q ss_pred ecCCCCCChHHHHHHHHHhhcc---CCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEe
Q 016989 83 LREDKPHGSAGALYNFRDLIME---DNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~---~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d 158 (379)
+.++.+.||++|++.+++.+.. +..++|+|++||+++ +.++.++ ..++++++++.+.. ++ .||++..+
T Consensus 79 ~~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~--~p-~yG~v~~d 150 (255)
T 4evw_A 79 ELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGG--GD-NWSFAKPE 150 (255)
T ss_dssp EESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECC--SS-CSCEEEES
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecC--CC-ceeEEEEC
Confidence 5567889999999999999830 112469999999998 6777664 24567888888874 33 99999998
Q ss_pred CCCC--cEEEeeecCCCcccceeeeeEEEeCHh--hHHHhhcccc-ccc---cchhhhhcchhhhhhhhccccccccccc
Q 016989 159 PDTN--ELLHYTEKPETFVSDLINCGVYVFTPD--IFNAIQGVSS-QRK---DRENLRRVSSFEALQSATRNLTTDFVRL 230 (379)
Q Consensus 159 ~~~~--~v~~~~ekp~~~~~~~~~~Giy~~~~~--~l~~l~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (379)
+ ++ +|..|.||+ ..++++++|+|+|++. +++.+.+... ... ++| |+.
T Consensus 151 ~-~g~~~V~~i~EK~--~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE---------------------~~l- 205 (255)
T 4evw_A 151 H-AGSTKVIQTAEKN--PISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGE---------------------LYI- 205 (255)
T ss_dssp S-TTCCBEEEEESSS--CSSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSC---------------------CCS-
T ss_pred C-CCCeEEEEEEecc--CccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCe---------------------Eeh-
Confidence 5 67 999999993 3578999999999974 3344433211 110 222 221
Q ss_pred cccccccccC-CceEEEEEcc-cchhhcCCccchhhcch
Q 016989 231 DQDILSPLAG-KKQLYTYETM-DFWEQIKTPGMSLKCSG 267 (379)
Q Consensus 231 ~~d~l~~l~~-~~~v~~~~~~-~~w~~i~t~~d~~~a~~ 267 (379)
+|+++.+++ +.++.++.++ ++|.++|||++|.++.+
T Consensus 206 -td~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~ 243 (255)
T 4evw_A 206 -APLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR 243 (255)
T ss_dssp -TTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred -HHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence 688887764 4689999985 89999999999988753
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=235.28 Aligned_cols=243 Identities=16% Similarity=0.202 Sum_probs=150.4
Q ss_pred CCCceEEEEEecCCCCCCccCCCCC-CCCCCCcee-CCcchhHHHHHhcCc----EEEEcccc-hHHHHHHHHhhcccCC
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSL-NIPKPLFPL-GGQPMVHHPISACKR----IYLVGFYE-EREFALYVSSISNELR 77 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~-~~pK~llpi-~g~pli~~~i~~l~~----iiv~~~~~-~~~i~~~l~~~~~~~~ 77 (379)
|.++|+||||||| .|+||+|+|. ..||+|+|+ +|+|||+|+++.+.+ |+|++... ...+.+++... ++
T Consensus 1 m~~~~~avIlAgG--~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~~~~i~vv~~~~~~~~i~~~~~~~---~~ 75 (308)
T 2qh5_A 1 MSLKIKNILLSGG--SGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASLVDETLIVCNEKHYFLALEEIKNE---IK 75 (308)
T ss_dssp --CCEEEEEECC---------------CCGGGCTTBTTBCHHHHHHHHHHTTCSEEEEEEEGGGHHHHHHHTTTT---CS
T ss_pred CCCccEEEEEcCC--CCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHccCCCEEEEEChhHHHHHHHHHHHh---hC
Confidence 3455899999999 9999999997 899999999 599999999999865 66655543 23567777541 45
Q ss_pred c-cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCC-hHHHHHH---HHhcCCceEEEEEEeCCCCCCc
Q 016989 78 I-PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDA---HRNYGGMGTILVIKVSAESASQ 151 (379)
Q Consensus 78 ~-~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~d-l~~~l~~---~~~~~~~~ti~~~~~~~~~~~~ 151 (379)
+ ++.++.++...|++++++.+...+..+ +.|++++||+++ +.+ +.++++. |.+.++++|+++.+. ..+..
T Consensus 76 ~~~~~~i~~~~~~gt~~al~~a~~~l~~~--~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~ 151 (308)
T 2qh5_A 76 NKSVGFLLESLSKNTANAIALSALMSDKE--DLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSID--KPNTE 151 (308)
T ss_dssp SCEEEEEEESSCCCHHHHHHHHHHTSCTT--SEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCTT
T ss_pred CCccEEEeCCCCCChHHHHHHHHHHhCCC--CeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecC--CCCCC
Confidence 5 566666777889999999999888422 359999999999 666 9999987 666777788887765 34578
Q ss_pred eeEEEEeCCCCcEEEeeecCCCcc--------cceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccc
Q 016989 152 FGELVADPDTNELLHYTEKPETFV--------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (379)
Q Consensus 152 ~g~v~~d~~~~~v~~~~ekp~~~~--------~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
||++..++ +++|..|.|||.... ..++++|+|+|++++| +.+.+..+... +.+......
T Consensus 152 ~g~i~~d~-~~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~-----------~~~~~~~~~ 219 (308)
T 2qh5_A 152 FGYIESPN-GLDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTIL-----------KGCERAFES 219 (308)
T ss_dssp SEEEECSS-SSBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHH-----------HHHHHHGGG
T ss_pred ceEEEECC-CCEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHH-----------HHHHHHhhc
Confidence 99988763 689999999986431 4689999999999874 66664432210 000000000
Q ss_pred cc------cccccccccccc--------c-cc-CCceEEEEEcccchhhcCCccchhhcchH
Q 016989 223 LT------TDFVRLDQDILS--------P-LA-GKKQLYTYETMDFWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 223 ~~------~~~~~l~~d~l~--------~-l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~ 268 (379)
.. .++.++..++++ . +. ++.++.+++.+++|.++|||++|.+++..
T Consensus 220 ~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~ 281 (308)
T 2qh5_A 220 LENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAAN 281 (308)
T ss_dssp CEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC-------------
T ss_pred cccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhc
Confidence 00 111111123332 1 33 45789999999999999999999988643
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=210.85 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=168.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
++.||||||| .|||| | ||+|+|++|||||+|+++.+.. |+|++. . +.+.+++.. +++++.+
T Consensus 2 ~~~aiIlA~G--~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~-~-~~i~~~~~~----~g~~v~~ 67 (252)
T 3oam_A 2 SFTVVIPARY--QSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATD-D-ERVEQAVQA----FGGVVCM 67 (252)
T ss_dssp CEEEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES-C-HHHHHHHHH----TTCEEEE
T ss_pred ceEEEEecCc--CCCCC-C-----CcceeeECCEEHHHHHHHHHHhCCCCeEEEECC-H-HHHHHHHHH----cCCEEEE
Confidence 4799999999 99999 5 8999999999999999999975 666664 2 457777763 5677777
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCce-----eEE
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQF-----GEL 155 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~-----g~v 155 (379)
..++...|++. +..+.+.+.....+.+++++||.++ +.++.++++.|.+.++++++++.+.. ++..| +.+
T Consensus 68 ~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~--~~~~~~~p~~g~v 144 (252)
T 3oam_A 68 TSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIE--DEAEVFNPNAVKV 144 (252)
T ss_dssp CCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEEC--CHHHHTCTTSCEE
T ss_pred cCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecC--CHHHhhCCCceEE
Confidence 77777889987 5566666631123579999999977 67899999999888888999988874 45556 888
Q ss_pred EEeCCCCcEEEeeecCCC-------------cccceeeeeEEEeCHhhHHHhhccccccc-cchhhhhcchhhhhhhhcc
Q 016989 156 VADPDTNELLHYTEKPET-------------FVSDLINCGVYVFTPDIFNAIQGVSSQRK-DRENLRRVSSFEALQSATR 221 (379)
Q Consensus 156 ~~d~~~~~v~~~~ekp~~-------------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 221 (379)
..|+ +|+++.|.++|-. +..++.++|+|+|++++|+.+....++.. +.|.
T Consensus 145 v~d~-~g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~--------------- 208 (252)
T 3oam_A 145 ITDK-SGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIEC--------------- 208 (252)
T ss_dssp EECT-TSBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHT---------------
T ss_pred EECC-CCeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccch---------------
Confidence 8884 7999999988631 23678999999999999988876543221 1110
Q ss_pred ccccccccccccccccccCCceEEEEEcc-cchhhcCCccchhhcchHHHH
Q 016989 222 NLTTDFVRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 222 ~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-~~w~~i~t~~d~~~a~~~~l~ 271 (379)
-+.+..+..+.+|.++... .+|.+||||+||.++++++..
T Consensus 209 ----------le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~ 249 (252)
T 3oam_A 209 ----------LEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAE 249 (252)
T ss_dssp ----------CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHh
Confidence 2333344557789998664 468999999999999877643
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-26 Score=212.68 Aligned_cols=230 Identities=17% Similarity=0.265 Sum_probs=159.3
Q ss_pred eEEEEEecCCCCCCccCCCC-CCCCCCCceeCC-cchhHHHHHhcCc------EEEEcccc-hHHHHHHHHhhcccCCcc
Q 016989 9 VVAVIMVGGPTKGTRFRPLS-LNIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIP 79 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt-~~~pK~llpi~g-~pli~~~i~~l~~------iiv~~~~~-~~~i~~~l~~~~~~~~~~ 79 (379)
|++|||||| .||||+|+| ...||+|+|++| +|||+|+++++.. ++|+++.. ...+.+++..... ..
T Consensus 2 m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~---~~ 76 (336)
T 2x65_A 2 MKALILAGG--SGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPD---EN 76 (336)
T ss_dssp CEEEEECCC--BCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCG---GG
T ss_pred eEEEEECCC--CCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcccc---ce
Confidence 689999999 999999999 689999999999 9999999999854 66665554 3346677654211 23
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--CChHHH----HHHHHhcCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEM----LDAHRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--~dl~~~----l~~~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
+ +.++...||+.++..+...+.. .+.+++++||+++. .++.++ ++.|.+.++.+|+.+.+.. ..+.||
T Consensus 77 i--i~e~~~~gta~ai~~a~~~~~~--~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~--~~~~yG 150 (336)
T 2x65_A 77 I--IAEPMKKNTAPACFIGTKLADD--DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTR--PETGYG 150 (336)
T ss_dssp E--EEESSCCCHHHHHHHHHTTSCT--TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCS--CCSSSE
T ss_pred E--EeCCCCCCcHHHHHHHHHhhCC--CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeeccc--CCCCce
Confidence 3 3456678999999988776532 24699999999993 255444 4446665666777766653 347899
Q ss_pred EEEEeCCC-----CcEEEeeecCCCcc--------cceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhh
Q 016989 154 ELVADPDT-----NELLHYTEKPETFV--------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSA 219 (379)
Q Consensus 154 ~v~~d~~~-----~~v~~~~ekp~~~~--------~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (379)
++..++ + ++|..|.|||.... ..++++|+|+|+++.| +.+.+..+... +.+...
T Consensus 151 ~I~~~~-~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~-----------~~~~~~ 218 (336)
T 2x65_A 151 YIEIGE-ELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIY-----------ENLKDV 218 (336)
T ss_dssp EEEEEE-EEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHH-----------HHHTTC
T ss_pred EEEECC-ccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHH-----------HHHHHh
Confidence 998763 3 68999999997421 2578999999999876 77765433211 000000
Q ss_pred cccccccccccccccccc---------c-cCCceEEEEEcccchhhcCCccchhhc
Q 016989 220 TRNLTTDFVRLDQDILSP---------L-AGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 220 ~~~~~~~~~~l~~d~l~~---------l-~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
..... +|. .++++. + .+..++++++.+++|.|+||+++|.++
T Consensus 219 ~~~~e-~~~---~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 219 DPRNF-EEL---KKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp CTTCH-HHH---HHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred hhhhh-hHH---HHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 00000 111 233332 3 345789999999999999999999876
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-26 Score=205.40 Aligned_cols=219 Identities=15% Similarity=0.196 Sum_probs=151.1
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++|.||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++.+..+.+.++.. .+++.+.
T Consensus 24 ~~~~aiIlAaG--~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~----~~~~~iv 97 (254)
T 1jyk_A 24 IRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKE----KYGVRLV 97 (254)
T ss_dssp CCCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHH----HHCCEEE
T ss_pred cCceEEEECCC--CcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHH----hCCcEEE
Confidence 36899999999 9999999999999999999999999999999865 66655543334554443 2345554
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEEEeCCCCC-CceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~~~~~~~~~~-~~~g~v~~d~ 159 (379)
+..+..+.|++++++.+++.++ ++++++||+++..+ +..++ +.++.+++ ... ++ ..|+++ .++
T Consensus 98 ~~~~~~~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~~~~~~----~~~~~~t~---~~~--~~~~~~~v~-~d~ 162 (254)
T 1jyk_A 98 FNDKYADYNNFYSLYLVKEELA-----NSYVIDADNYLFKNMFRNDL----TRSTYFSV---YRE--DCTNEWFLV-YGD 162 (254)
T ss_dssp ECTTTTTSCTHHHHHTTGGGCT-----TEEEEETTEEESSCCCCSCC----CSEEEEEC---EES--SCSSCCEEE-ECT
T ss_pred ECCCccCCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHHHHHHH----hCCceEEE---Ecc--cCCCCeEEE-ECC
Confidence 4434456799999999888773 28899999999444 33332 22222222 222 22 367754 663
Q ss_pred CCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 239 (379)
+++|..+.|+|. ..+.++|+|+|+++.++.|.+..... +..+ .....++ .++++.+.
T Consensus 163 -~g~v~~~~e~~~---~~~~~~Giy~~~~~~~~~l~~~l~~~--------------~~~~--~~~e~~~---~d~~~~l~ 219 (254)
T 1jyk_A 163 -DYKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKA--------------YVSG--EFVDLYW---DNMVKDNI 219 (254)
T ss_dssp -TCBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHH--------------HTTT--CCTTCCT---THHHHTTG
T ss_pred -CCeEEEEEECCC---CCcEEEEEEEEcHHHHHHHHHHHHHH--------------HhcC--CccccCH---HHHHHHHH
Confidence 789999999853 46899999999987655444321110 0000 0011122 56777777
Q ss_pred CCceEEEEEcc-cchhhcCCccchhhcchHH
Q 016989 240 GKKQLYTYETM-DFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 240 ~~~~v~~~~~~-~~w~~i~t~~d~~~a~~~~ 269 (379)
++.++.++.++ ++|.+|+|++||.++++.+
T Consensus 220 ~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l 250 (254)
T 1jyk_A 220 KELDVYVEELEGNSIYEIDSVQDYRKLEEIL 250 (254)
T ss_dssp GGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred hhCCeEEEEecCCeEEEcCCHHHHHHHHHHh
Confidence 77889999987 7999999999999997655
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=197.79 Aligned_cols=221 Identities=12% Similarity=0.134 Sum_probs=159.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.||||||| .|||| | ||+|+|++|||||+|+++.+.+ |+|++. . +.+.++++. +|.++.
T Consensus 8 M~~~aIIlA~G--~stRl-~-----~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~-~-~~i~~~~~~----~g~~v~ 73 (256)
T 3tqd_A 8 MEFRVIIPARF--DSTRL-P-----GKALVDIAGKPMIQHVYESAIKSGAEEVVIATD-D-KRIRQVAED----FGAVVC 73 (256)
T ss_dssp -CCEEEEECCC--C---C-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES-C-HHHHHHHHH----TTCEEE
T ss_pred CCceEEEEcCC--CCCCC-C-----CCCeeeECCchHHHHHHHHHHhCCCCEEEEECC-H-HHHHHHHHH----cCCeEE
Confidence 45899999999 99999 4 8999999999999999999975 666654 2 447777653 567777
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhc-CCceEEEEEEeCC----CCCCceeE
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSA----ESASQFGE 154 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~-~~~~ti~~~~~~~----~~~~~~g~ 154 (379)
+..++...|++. +..+.+.+.....+.++++.||.++ ..++..+++.+.+. ++++++++.+... .++..++
T Consensus 74 ~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk- 151 (256)
T 3tqd_A 74 MTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK- 151 (256)
T ss_dssp ECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE-
T ss_pred EeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE-
Confidence 766677778875 7778777742123579999999988 56799999998774 4567777776531 2444555
Q ss_pred EEEeCCCCcEEEeeecCCCc--------------ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhc
Q 016989 155 LVADPDTNELLHYTEKPETF--------------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (379)
Q Consensus 155 v~~d~~~~~v~~~~ekp~~~--------------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (379)
+..|. +|+++.|.++|... ...+..+|+|.|++++|+.+....++.... .
T Consensus 152 vv~d~-~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~-----------~---- 215 (256)
T 3tqd_A 152 VVLNR-RNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEK-----------M---- 215 (256)
T ss_dssp EEECT-TSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHH-----------H----
T ss_pred EEECC-CCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccc-----------h----
Confidence 45663 79999999986421 256899999999999999988665432110 0
Q ss_pred cccccccccccccccccccCCceEEEEEcccc-hhhcCCccchhhcchH
Q 016989 221 RNLTTDFVRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMSLKCSGL 268 (379)
Q Consensus 221 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~-w~~i~t~~d~~~a~~~ 268 (379)
+ + -+.++.|..+.+|+++..+++ |.+||||+||.+++++
T Consensus 216 -----e--~--leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 216 -----E--A--LEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp -----H--T--CTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred -----h--h--hHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 0 0 233444567789999999875 8999999999988643
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=210.31 Aligned_cols=232 Identities=18% Similarity=0.246 Sum_probs=154.3
Q ss_pred ceEEEEEecCCCCCCccCCCC-CCCCCCCceeCC-cchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCc
Q 016989 8 KVVAVIMVGGPTKGTRFRPLS-LNIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRI 78 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt-~~~pK~llpi~g-~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~ 78 (379)
+|.+|||||| .||||+|+| ...||+|+|++| +|||+|+++++.. ++|+++... ..+.+++.. .
T Consensus 2 ~m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------~ 73 (337)
T 2cu2_A 2 KTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------I 73 (337)
T ss_dssp CEEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------S
T ss_pred CeEEEEEcCC--CcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------C
Confidence 3799999999 999999999 589999999999 9999999999864 666665442 233333321 2
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhcc-CCCCeEEEEcCCeeec--CChHHHHHH----HHhcCCceEEEEEEeCCCCCCc
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIME-DNPSHIFLLNCDVCCS--FPLPEMLDA----HRNYGGMGTILVIKVSAESASQ 151 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~-~~~~~~lv~~gD~i~~--~dl~~~l~~----~~~~~~~~ti~~~~~~~~~~~~ 151 (379)
++ +.++...||+.++..+.. +.. ...+.+++++||+++. .++..+++. |.+ ++.+|+.+.+.. ..+.
T Consensus 74 ~~--i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~--~~t~ 147 (337)
T 2cu2_A 74 RL--LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTR--PETE 147 (337)
T ss_dssp EE--EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSS--CCSS
T ss_pred ce--EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCC--CCCC
Confidence 22 334667899999998876 532 1125799999999993 345555543 333 566677766552 4578
Q ss_pred eeEEEEeCCC----CcEEEeeecCCCcc------c-ceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhh
Q 016989 152 FGELVADPDT----NELLHYTEKPETFV------S-DLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSA 219 (379)
Q Consensus 152 ~g~v~~d~~~----~~v~~~~ekp~~~~------~-~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (379)
||++..++ + ++|..|.|||.... + .++++|+|+|+++.| +.+.+..+.... .+...
T Consensus 148 yG~I~~~~-~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~-----------~~~~~ 215 (337)
T 2cu2_A 148 YGYIRLGP-REGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHE-----------ALERL 215 (337)
T ss_dssp SCEEEEEE-EETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHH-----------HHHHH
T ss_pred ceEEEECC-cccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHH-----------HHHHH
Confidence 99998763 4 68999999997421 1 689999999999876 777654332110 00000
Q ss_pred cccc--ccccccccccccc--cccCCceEEEEEcccchhhcCCccchhhc
Q 016989 220 TRNL--TTDFVRLDQDILS--PLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 220 ~~~~--~~~~~~l~~d~l~--~l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
..+. ...|..++...+. .+.++.++++++.+++|.|+||+++|.++
T Consensus 216 ~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~ 265 (337)
T 2cu2_A 216 LAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERV 265 (337)
T ss_dssp HTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHH
T ss_pred hcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHH
Confidence 0000 0001100011111 13345689999999999999999999876
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=194.40 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=161.8
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
+|++.||||||| .|||| | +|+|+|++|||||+|+++.+.+ |+|++. .+.+.+++.. ++.++
T Consensus 16 ~M~~~aIIlA~G--~stRl-p-----~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~----~g~~v 81 (264)
T 3k8d_A 16 HMSFVVIIPARY--ASTRL-P-----GKPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEV 81 (264)
T ss_dssp --CCEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEE
T ss_pred CCceEEEEEcCC--CCCCC-C-----CcceeeECCeEHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----cCCEE
Confidence 456899999999 99999 3 5999999999999999999975 666664 2347776653 56777
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCC----CCCCceeE
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSA----ESASQFGE 154 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~----~~~~~~g~ 154 (379)
.+..++...|++. +..+.+.+.....+.++++.||.++ ..+++++++.+.+.++++++++.+... .++..++
T Consensus 82 ~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vk- 159 (264)
T 3k8d_A 82 CMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVK- 159 (264)
T ss_dssp EECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCE-
T ss_pred EEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceE-
Confidence 6666677778875 7777777742123689999999988 677999999998878888888888742 1233334
Q ss_pred EEEeCCCCcEEEeeecCCC-------------cccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcc
Q 016989 155 LVADPDTNELLHYTEKPET-------------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATR 221 (379)
Q Consensus 155 v~~d~~~~~v~~~~ekp~~-------------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (379)
+..|. +|+++.|.+||.. ....+.++|+|+|++++++.+....++... .
T Consensus 160 Vv~d~-~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE-----------~------ 221 (264)
T 3k8d_A 160 VVLDA-EGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLE-----------H------ 221 (264)
T ss_dssp EEECT-TSBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHH-----------H------
T ss_pred EEECC-CCeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhh-----------h------
Confidence 45664 8999999999742 124689999999999999888754322110 0
Q ss_pred ccccccccccccccccccCCceEEEEEc-ccchhhcCCccchhhcchH
Q 016989 222 NLTTDFVRLDQDILSPLAGKKQLYTYET-MDFWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 222 ~~~~~~~~l~~d~l~~l~~~~~v~~~~~-~~~w~~i~t~~d~~~a~~~ 268 (379)
.+. -+.+..|..+.+|+++.. ...|.+||||+||.+|+++
T Consensus 222 ---~e~----leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~ 262 (264)
T 3k8d_A 222 ---IEM----LEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAE 262 (264)
T ss_dssp ---HHT----CTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHH
T ss_pred ---HHH----HHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 000 233444566789999865 4468999999999998754
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=181.77 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=158.8
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHH-HhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-SACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i-~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+.||||||| .|+||. +|+|+|++|||||+|++ +.+.+ |+|++.. +.+.+++. .+|.++.+
T Consensus 2 ~~aiIlA~G--~stR~~------~K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~----~~g~~v~~ 67 (253)
T 4fcu_A 2 KHIVIPARF--SSSRLP------GKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD--ERIAEICR----AEGVDVVL 67 (253)
T ss_dssp EEEEEECCS--CCTTST------TGGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH----TTTCCEEE
T ss_pred eEEEEEeCC--CCCCCC------CCceeeECCeEhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHH----HcCCeEEE
Confidence 579999999 999996 49999999999999999 88875 6666653 34666664 35677766
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcC-CceEEEEEEeC----CCCCCceeEE
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYG-GMGTILVIKVS----AESASQFGEL 155 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~-~~~ti~~~~~~----~~~~~~~g~v 155 (379)
..++...|+ +++..+.+.+.....+.++++.||.|+ ...++++++.|.+.+ +.++.++.+.. ..+|..++ +
T Consensus 68 ~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~k-v 145 (253)
T 4fcu_A 68 TSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVK-V 145 (253)
T ss_dssp CCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCE-E
T ss_pred eCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccE-E
Confidence 656666677 478888887753223689999999988 567999999988763 34443444432 13455554 4
Q ss_pred EEeCCCCcEEEeeecCCC-------------cccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccc
Q 016989 156 VADPDTNELLHYTEKPET-------------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (379)
Q Consensus 156 ~~d~~~~~v~~~~ekp~~-------------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
..+. +|+++.|.++|-. +...+.++|+|+|++++|+.+....++. + +++
T Consensus 146 v~d~-~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~----l--e~~----------- 207 (253)
T 4fcu_A 146 VMSK-QNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGK----L--EKL----------- 207 (253)
T ss_dssp EECT-TSBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCH----H--HHH-----------
T ss_pred EECC-CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCc----c--cch-----------
Confidence 5663 7999999987531 2345789999999999998887543221 1 000
Q ss_pred cccccccccccccccccCCceEEEEEcccc-hhhcCCccchhhcchHHHHh
Q 016989 223 LTTDFVRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 223 ~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~-w~~i~t~~d~~~a~~~~l~~ 272 (379)
+. -+.+..+..+.+|+++..+++ |.++|||+||.++++++..+
T Consensus 208 ---e~----le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 208 ---ES----LEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp ---HT----CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred ---hH----HHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 00 122333456789999999999 99999999999998766544
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=179.07 Aligned_cols=217 Identities=16% Similarity=0.142 Sum_probs=147.9
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
++.||||||| .|+||+ ||+|+|++|+|||+|+++.+.. |+|++.. +.+.++++. + .++.+.
T Consensus 2 ~~~aiIlA~G--~g~R~~------~K~l~~i~g~pli~~~l~~~~~~~~~i~v~~~~--~~i~~~~~~----~-~~~~~~ 66 (234)
T 2y6p_A 2 RRAVIIPARL--GSTRLK------EKPLKNLLGKPLIRWVVEGLVKTGERVILATDS--ERVKEVVED----L-CEVFLT 66 (234)
T ss_dssp CEEEEEECCS--CCTTTT------TGGGCEETTEEHHHHHHHHHHTTTSCEEEEESC--HHHHHHHTT----T-SEEEEC
T ss_pred ceEEEEEcCC--CCCCCC------CCcceeECCEEHHHHHHHHHHHhCCEEEEECCh--HHHHHHHHh----c-eEEEEC
Confidence 4789999999 999997 8999999999999999999865 6666654 346676653 2 445444
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHHHHhcCCceEEEEEEeC-CCCCCceeEEEEeCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMGTILVIKVS-AESASQFGELVADPD 160 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~~~~~~~~~ti~~~~~~-~~~~~~~g~v~~d~~ 160 (379)
.+....|++.++ .+.+.+. .+.+++++||.|+ + .+++++++.|.+.++.++++..... ..++..++ +..++
T Consensus 67 ~~~~~~g~~~~~-~~~~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 140 (234)
T 2y6p_A 67 PSDLPSGSDRVL-YVVRDLD---VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLDR- 140 (234)
T ss_dssp CTTCCSHHHHHH-HHHTTCC---CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEECT-
T ss_pred CcccccchHHHH-HHHHhCC---CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEcC-
Confidence 445566777765 4555543 3579999999966 4 7899999999877643444433211 11233444 33453
Q ss_pred CCcEEEeeecCCC--cc----cceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 161 TNELLHYTEKPET--FV----SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 161 ~~~v~~~~ekp~~--~~----~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..+.+||.. .. ..+.++|+|+|+++.+..+......... ..++. . .
T Consensus 141 ~g~v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~--------------------~~d~~---~-~ 196 (234)
T 2y6p_A 141 EGYALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLE--------------------QIEGL---E-Q 196 (234)
T ss_dssp TSBEEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHH--------------------HHHTC---T-H
T ss_pred CCCEeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCccc--------------------hhhHH---H-H
Confidence 7899999998742 11 3578999999999987766532211100 00110 1 1
Q ss_pred cccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 235 l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
++.+..+.++.++..+++|.+|+||+||..++.++
T Consensus 197 ~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 197 LRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred HHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 22344567899999999999999999999886543
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=180.56 Aligned_cols=211 Identities=16% Similarity=0.231 Sum_probs=128.7
Q ss_pred CCCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCcc
Q 016989 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 4 ~~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
.|++++.||||||| .|+||+|+ ||+|+|++|+|||+|+++.+.. |+|++ ...+.+.+++. ..++.+
T Consensus 14 ~~m~~~~~iIlA~G--~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~~~~i~vv~-~~~~~~~~~~~---~~~~~~ 83 (232)
T 2xme_A 14 GRIKLMKAVILAAG--LGTRLGGV----PKPLVRVGGCEIILRTMKLLSPHVSEFIIVA-SRYADDIDAFL---KDKGFN 83 (232)
T ss_dssp --CCCEEEEEEECC--------CC----CGGGCEETTEEHHHHHHHHHGGGEEEEEEEE-STTHHHHHHHH---TTSCCC
T ss_pred cccccceEEEECCc--CcCcCCCC----CcEEeEECCEEHHHHHHHHHHHhCCEEEEEe-CChHHHHHHHH---HhcCCc
Confidence 35567999999999 99999985 9999999999999999999876 66666 33344666653 234555
Q ss_pred EEEecCCC-CCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDK-PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~-~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+.++.++. ..|++++++.+++.+++ ++++++||.+++.+ ++.+++ .. .+++...........++.+..
T Consensus 84 ~~~v~~~~~~~g~~~~i~~a~~~~~~----~~lv~~~D~p~~~~~~~~l~~----~~--~~~~~~~~~~~~~~~~~~v~~ 153 (232)
T 2xme_A 84 YKIVRHDRPEKGNGYSLLVAKNHVED----RFILTMGDHVYSQQFIEKAVR----GE--GVIADREPRFVDIGEATKIRV 153 (232)
T ss_dssp EEEEECSCGGGCHHHHHHTTGGGCCS----SEEEEETTEEECHHHHHHHTT----CC--EEEEESSCSSSCTTTSCEEEE
T ss_pred EEEEECCCCCCCcHHHHHHHHHHCCC----CEEEEcCCcccCHHHHHHHHh----CC--CcEEEccccccCCCcceEEEE
Confidence 66665444 37999999999888752 49999999998433 344433 21 122211111112345666666
Q ss_pred eCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
+ ++++..+.+++. ..++.++|+|++++++|+.+.+.... ++. .+ .+++.
T Consensus 154 ~--~g~v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~---g~~-------------------~l----~~ll~- 202 (232)
T 2xme_A 154 E--DGRVAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDR---EEI-------------------PL----SEIVK- 202 (232)
T ss_dssp E--TTEEEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTS---SCC-------------------CH----HHHHH-
T ss_pred c--CCEEEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhc---Chh-------------------HH----HHHHH-
Confidence 5 589999998864 35678999999999999877653210 000 00 22222
Q ss_pred ccCCceEEEEEcc-cchhhcCCccchhhcchH
Q 016989 238 LAGKKQLYTYETM-DFWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 238 l~~~~~v~~~~~~-~~w~~i~t~~d~~~a~~~ 268 (379)
...+..+.++ ++|.+++||+||.+++++
T Consensus 203 ---~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 203 ---LARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp ---HHTCBEEECCSCCEEEEECC---------
T ss_pred ---cCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 2245555554 689999999999887643
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=177.90 Aligned_cols=223 Identities=13% Similarity=0.146 Sum_probs=152.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
++.||||||| .|+|| | +|+|+|++|+|||+|+++.+.. |+|++.. +.+.+++.. +++++..
T Consensus 2 ~~~aiIlA~G--~g~R~-~-----~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (262)
T 1vic_A 2 SFTVIIPARF--ASSRL-P-----GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKS----FGAEVCM 67 (262)
T ss_dssp CCEEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEE
T ss_pred CcEEEEEcCC--CCCCC-C-----CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh----cCCEEEE
Confidence 4789999999 99999 5 5999999999999999999875 6666654 336666653 3555533
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCC---CCCceeEEEE
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAE---SASQFGELVA 157 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~---~~~~~g~v~~ 157 (379)
..+....|++ .+..+...+.....+.+++++||.++ ..++.++++.+.+.++++++++.+.... ....|..+..
T Consensus 68 ~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (262)
T 1vic_A 68 TSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLT 146 (262)
T ss_dssp CCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEE
T ss_pred CCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEE
Confidence 3234455665 55566666642223579999999987 5679999999888777787877776321 0234454554
Q ss_pred eCCCCcEEEeeecC-----------------CCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhc
Q 016989 158 DPDTNELLHYTEKP-----------------ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (379)
Q Consensus 158 d~~~~~v~~~~ekp-----------------~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (379)
+ ++|++..|.+++ +.+...+.++|+|+|+++++..+..........
T Consensus 147 ~-~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~---------------- 209 (262)
T 1vic_A 147 D-KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLEN---------------- 209 (262)
T ss_dssp C-TTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHH----------------
T ss_pred C-CCCCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhh----------------
Confidence 5 368998888764 122235789999999998887654322111000
Q ss_pred cccccccccccccccccccCCceEEEEEcc-cchhhcCCccchhhcchHHH
Q 016989 221 RNLTTDFVRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 221 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-~~w~~i~t~~d~~~a~~~~l 270 (379)
.++ + +. +..+..+.++.++..+ ++|.+|+||+||..|+.++.
T Consensus 210 ----~e~--~-~~-~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~ 252 (262)
T 1vic_A 210 ----LEK--L-EQ-LRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 252 (262)
T ss_dssp ----HHT--C-TT-HHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred ----hhh--H-HH-HHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 000 0 11 1223346789999998 79999999999999977664
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=169.30 Aligned_cols=217 Identities=18% Similarity=0.240 Sum_probs=150.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.||||||| .|+|| | ||+|+|++|+|||+|+++.+.. |+|++.+ +.+.+++.. +++++.
T Consensus 2 ~~~aiIlA~G--~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~ 67 (245)
T 1h7e_A 2 KAVIVIPARY--GSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA----FGGKAI 67 (245)
T ss_dssp CEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH----TTCEEE
T ss_pred CeEEEEEcCC--cCCCC-C-----CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH----cCCeEE
Confidence 4799999999 99999 6 9999999999999999999864 6666654 346666653 345554
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhc-CCceEEEEEEeCCC---CCCceeEE
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSAE---SASQFGEL 155 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~-~~~~ti~~~~~~~~---~~~~~g~v 155 (379)
...++...|++.++ .+...+. .+.+++++||.++ ..++.++++.|.+. ++++++++.+.... ++.... +
T Consensus 68 ~~~~~~~~g~~~~~-~~~~~~~---~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 142 (245)
T 1h7e_A 68 MTRNDHESGTDRLV-EVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVK-V 142 (245)
T ss_dssp ECCSCCSSHHHHHH-HHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCE-E
T ss_pred eCCCccCCcHHHHH-HHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcE-E
Confidence 43345566776544 4555553 2579999999987 56799999998887 67777777665111 122222 2
Q ss_pred EEeCCCCcEEEeeecCCC--c----ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccc
Q 016989 156 VADPDTNELLHYTEKPET--F----VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (379)
Q Consensus 156 ~~d~~~~~v~~~~ekp~~--~----~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
..+ +++++..|.+++.. . ...+.++|+|+|+++.+..+.... .+++ |+
T Consensus 143 ~~~-~~g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~~----~~~~--~~------------------- 196 (245)
T 1h7e_A 143 VVN-TRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLP----ESMP--EQ------------------- 196 (245)
T ss_dssp EEC-TTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSC----CCHH--HH-------------------
T ss_pred EEC-CCCcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhCC----CCcc--cc-------------------
Confidence 224 37899998876432 1 235789999999998765443221 1111 11
Q ss_pred ccccccccc---cCCceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 230 LDQDILSPL---AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 230 l~~d~l~~l---~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
.|.++.+ ..+.++.++..++.|.+|+||+||..+..++..
T Consensus 197 --td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~ 239 (245)
T 1h7e_A 197 --AESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp --HHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred --chhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 3444332 346789999999999999999999999876654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=164.25 Aligned_cols=202 Identities=14% Similarity=0.051 Sum_probs=137.5
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
++++.||||||| .|+||+ ||+|+|++|+|||+|+++.+.+ |+|++.. +.+.+++.. ++.+
T Consensus 2 ~m~~~aiIlA~G--~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~ 67 (228)
T 1ezi_A 2 EKQNIAVILARQ--NSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN----FGVE 67 (228)
T ss_dssp CCEEEEEEECCS--SCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH----TTCE
T ss_pred CCceEEEEecCC--CCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH----cCCE
Confidence 355789999999 999998 7999999999999999999864 6666653 235565543 3455
Q ss_pred EEEecCC----CCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYLRED----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~~~~----~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
+ +.... ...|++++++.+++.+.. ..+.+++++||.++ ..+++++++.+.+.++++++++.+... .+ ++
T Consensus 68 ~-~~~~~~~~~~~~g~~~sv~~~l~~~~~-~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~p--~~ 142 (228)
T 1ezi_A 68 V-VLRPAELASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH-HP--LK 142 (228)
T ss_dssp E-EECCC------CHHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSS-CT--TS
T ss_pred E-EeCchHHcCCCCChHHHHHHHHHHhCC-CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCC-Cc--ce
Confidence 5 22222 356788999999988842 23579999999987 567899998887767777887777632 12 33
Q ss_pred EEEEeCCCCcEEEeee-c---CC--C-cccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccc
Q 016989 154 ELVADPDTNELLHYTE-K---PE--T-FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (379)
Q Consensus 154 ~v~~d~~~~~v~~~~e-k---p~--~-~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
....+ ++|++..+.+ + +. . ......++|+|++++..+......
T Consensus 143 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~----------------------------- 192 (228)
T 1ezi_A 143 TLLQI-NNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNCF----------------------------- 192 (228)
T ss_dssp CEEEC-C--CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHTSS-----------------------------
T ss_pred eeEEc-CCCcEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCCcc-----------------------------
Confidence 33335 3678888866 2 11 1 122345789999998765432100
Q ss_pred cccccccccccccCCceEEEEEcc-cchhhcCCccchhhcchHH
Q 016989 227 FVRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 227 ~~~l~~d~l~~l~~~~~v~~~~~~-~~w~~i~t~~d~~~a~~~~ 269 (379)
-+.++..+..+ ..|.+|+||+||..+..++
T Consensus 193 -------------~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l 223 (228)
T 1ezi_A 193 -------------FIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (228)
T ss_dssp -------------CCSSCEEEECCTGGGCCCCSHHHHHHHHHHH
T ss_pred -------------cCCceEEEEeCcccccCCCCHHHHHHHHHHH
Confidence 02356666665 5899999999999886554
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=154.22 Aligned_cols=215 Identities=14% Similarity=0.084 Sum_probs=129.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVR 81 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i~ 81 (379)
+.||||||| .|+||++ ..+||+|+|++|+|||+|+++.+.+ |+|++.... +.+.+++....-.+.....
T Consensus 3 ~~~iIlA~G--~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (236)
T 2vsh_A 3 IYAGILAGG--TGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERII 78 (236)
T ss_dssp EEEEEEEC---------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEE
T ss_pred eEEEEeCCc--cccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceE
Confidence 689999999 9999998 6789999999999999999999863 666665544 4466666542100111222
Q ss_pred EecCCCCCChHHHHHHHHHhhcc--C--CCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEE
Q 016989 82 YLREDKPHGSAGALYNFRDLIME--D--NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGEL 155 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~--~--~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v 155 (379)
.. ....|+.++++.+++.+.. . ..+.+++++||+|+ ..++.++++.|.+.++ ++++.+.. ++ +
T Consensus 79 ~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~~--~~-----~ 147 (236)
T 2vsh_A 79 IT--KGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEAV--DT-----I 147 (236)
T ss_dssp EE--ECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEECC--SC-----E
T ss_pred EE--CCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEecc--cc-----E
Confidence 22 2235788999999888742 1 12579999999976 5679999999887654 34444442 22 1
Q ss_pred EEeCCCC-cEEEeeecCCCcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhcccccccccccccc
Q 016989 156 VADPDTN-ELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQD 233 (379)
Q Consensus 156 ~~d~~~~-~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 233 (379)
..+ ++| ++..+.+++.. ......|+|+++.+. .+...... + + | .+ .+
T Consensus 148 ~~~-~~g~~~~~~~~~~~~----~~~~~p~~f~~~~l~~~~~~~~~~---g-~--~-------------------~~-~~ 196 (236)
T 2vsh_A 148 VES-TNGQFITDIPNRAHL----YQGQTPQTFRCKDFMDLYGSLSDE---E-K--E-------------------IL-TD 196 (236)
T ss_dssp EEC-SSSSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTCCHH---H-H--H-------------------HC-CS
T ss_pred EEe-CCCCeeeeecChHHh----eeecCCcEecHHHHHHHHHHHHhc---C-C--C-------------------cC-CC
Confidence 223 267 78777776431 112347889987665 44322110 0 0 0 00 22
Q ss_pred cccccc-CCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 234 ILSPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 234 ~l~~l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
.++.+. .+.++..+..+++|.+|+||+||..++.++
T Consensus 197 ~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~ 233 (236)
T 2vsh_A 197 ACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI 233 (236)
T ss_dssp HHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHh
Confidence 222222 245788888888999999999999886543
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-20 Score=162.75 Aligned_cols=216 Identities=13% Similarity=0.144 Sum_probs=136.8
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+|.+|||||| . |||++.+...||+|+|++|+|||+|+++.+.. |+|+++. ++ +.++ +++. +
T Consensus 2 ~~~~vIlAaG--~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~~~ivvv~~~-~~-i~~~-------~~~~--~- 66 (232)
T 2dpw_A 2 RPSAIVLAGG--K-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGEN-PG-LVPA-------PALT--L- 66 (232)
T ss_dssp CCEEEEECCC--B-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCC-SS-CSSC-------CSEE--E-
T ss_pred ceeEEEECCC--C-CccccccCCCCceeeEECCEEHHHHHHHHHHhcCCEEEEEeCh-HH-Hhhh-------cCeE--e-
Confidence 3789999999 8 77777665689999999999999999999875 6666664 22 2221 1333 3
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
....|++++++.+.+.+. +.+++++||+++ ..++.++++ | ..++++++...+... ....|+.+ .
T Consensus 67 --~~~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~-~~~~~~~~-----~ 132 (232)
T 2dpw_A 67 --PDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEA-VEARFPRT-----K 132 (232)
T ss_dssp --CCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHH-HHHHCTTC-----C
T ss_pred --cCCCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccc-hhhhCCCc-----c
Confidence 456799999999988875 369999999976 567899998 6 556677777665310 01233311 2
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhcccccc--ccch--hhhhcchhhhhhhhcccccccccccccccccc
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQR--KDRE--NLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
.+|..+.||| ..++|+|+|+++++..+.+..... ..+. .+.|.+-.+.+... ...++. + +++++.
T Consensus 133 ~~v~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~---~~ge~~-l-~~~~~~ 201 (232)
T 2dpw_A 133 RTYARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKL---LLGRLS-L-AEVEAR 201 (232)
T ss_dssp CCCEEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHH---HHTCCC-H-HHHHHH
T ss_pred eeEEEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHH---HhccCC-H-HHHHHH
Confidence 3577777775 388999999998876664322111 0000 00000000000000 001111 1 455544
Q ss_pred ccC--CceEEEEEc--ccchhhcCCccchh
Q 016989 238 LAG--KKQLYTYET--MDFWEQIKTPGMSL 263 (379)
Q Consensus 238 l~~--~~~v~~~~~--~~~w~~i~t~~d~~ 263 (379)
+.. +.++..+.. .+.|.++|||+||.
T Consensus 202 ~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 202 AQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 432 367888887 45799999999884
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-18 Score=151.15 Aligned_cols=218 Identities=16% Similarity=0.159 Sum_probs=139.7
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchH-HHHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEER-EFALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~-~i~~~l~~~~~~~~~~i 80 (379)
++.+|||||| .|+||++ ..+||+|+|++|+|||+|+++.+.+ |+|++..... .+.+.+..+.. ...+
T Consensus 3 ~~~aIIlAaG--~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~ 76 (246)
T 3f1c_A 3 LIYAQILAGG--KGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYIS--DDRI 76 (246)
T ss_dssp CEEEEEECC-------C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCC--CTTE
T ss_pred ccEEEEECCc--cccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCC--CCCE
Confidence 4799999999 9999987 5789999999999999999999854 6665554332 34455544221 2234
Q ss_pred EEecCCCCCChHHHHHHHHHhhcc----CCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeE
Q 016989 81 RYLREDKPHGSAGALYNFRDLIME----DNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~----~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 154 (379)
.++. ...+..++++.+++.+.. ...+.+++++||.|+ ...+.++++.+.+.++ .+++.+.. + .+
T Consensus 77 ~~~~--~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a--~i~~~~~~--d----~i 146 (246)
T 3f1c_A 77 VVIE--GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGA--VDTVIEAL--D----TI 146 (246)
T ss_dssp EEEE--CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSE--EEEEEECS--S----CE
T ss_pred EEEC--CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEecc--c----eE
Confidence 4443 234778899999988864 123689999999988 5679999999988654 44455542 1 33
Q ss_pred EEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhcccccccccccccc
Q 016989 155 LVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQD 233 (379)
Q Consensus 155 v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 233 (379)
+..+ +++.+..+.+++.. +..-.-++|+.+. ++.+...... +++ |+ +|
T Consensus 147 ~~~~-~~~~v~~~~~r~~l----~~~qtpq~f~~~~L~~a~~~~~~~---~~~--~~---------------------TD 195 (246)
T 3f1c_A 147 VESS-NHEVITDIPVRDHM----YQGQTPQSFNMKKVFNHYQNLTPE---KKQ--IL---------------------TD 195 (246)
T ss_dssp EECS-SSSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTSCHH---HHH--HC---------------------CC
T ss_pred EEec-CCCeEEEecChHHh----hhhcCCceeEHHHHHHHHHHHHHc---CCC--cc---------------------Cc
Confidence 3433 25667666666431 1222456888655 4566543211 111 22 23
Q ss_pred cccccc-CCceEEEEEcccchhhcCCccchhhcchHHHHh
Q 016989 234 ILSPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 234 ~l~~l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~ 272 (379)
....+. .+.++..++.+..|..|+||+||..++.++..+
T Consensus 196 ~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~ 235 (246)
T 3f1c_A 196 ACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQER 235 (246)
T ss_dssp HHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhcc
Confidence 333332 356899999988999999999999998777543
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-18 Score=148.69 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=122.9
Q ss_pred CCCCCCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcc
Q 016989 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 1 m~~~~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
|++. +++.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+ +....
T Consensus 1 m~~~--~~~~aiIlA~G--~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~- 71 (231)
T 1vgw_A 1 MSLK--RKNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAF- 71 (231)
T ss_dssp ---C--CCEEEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHC-
T ss_pred CCCC--CceEEEEEccc--ccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcC-
Confidence 4443 45899999999 9999997 689999999999999999999863 66666544334555 43321
Q ss_pred cCCccEEEecCCCCCChHHHHHHHHHhhccC----CCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCC
Q 016989 75 ELRIPVRYLREDKPHGSAGALYNFRDLIMED----NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAES 148 (379)
Q Consensus 75 ~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~----~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~ 148 (379)
. ..+.++ ....|++++++.+++.+... ..+.+++++||.++ ...+.++++.+.+.+. ..+++.+.. +
T Consensus 72 -~-~~i~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~-~~~~~~~~~--~ 144 (231)
T 1vgw_A 72 -P-QVRVWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAE-GGILAVPVA--D 144 (231)
T ss_dssp -T-TSEEEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTT-CEEEEEECC--S
T ss_pred -C-CceEEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCC-eEEEEeecc--c
Confidence 1 234444 34568999999998877421 23579999999987 4568999998866542 334444432 1
Q ss_pred CCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHh-hccccccccchhhhhcchhhhhhhhcccccccc
Q 016989 149 ASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (379)
Q Consensus 149 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
. . ...+ +|++....++ ...+...+.|+|+++.+..+ ....... . + +.
T Consensus 145 ~--~--~~~~--~g~i~~~~~~----~~~~~~~~p~~f~~~~l~~~~~~~~~~g----~----~--------------~~ 192 (231)
T 1vgw_A 145 T--L--KRAE--SGQISATVDR----SGLWQAQTPQLFQAGLLHRALAAENLGG----I----T--------------DE 192 (231)
T ss_dssp C--E--EEES--SSBEEEEECC----TTEEEEEEEEEEEHHHHHHHHHC----C----C----C--------------SH
T ss_pred c--e--EEeC--CCceEecCCh----HHheeeeCCcEecHHHHHHHHHHHhhcC----C----C--------------cH
Confidence 1 1 1122 4555433222 11122235889998766543 3211000 0 0 00
Q ss_pred ccccccccccccCCceEEEEEcccchhhcCCccchhhcchH
Q 016989 228 VRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 228 ~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~ 268 (379)
..++..+ +.++..+..++.|.+|+||+||..+..+
T Consensus 193 ----~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~ 227 (231)
T 1vgw_A 193 ----ASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLL 227 (231)
T ss_dssp ----HHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred ----HHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHH
Confidence 1122221 3567777777789999999999988654
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=147.04 Aligned_cols=200 Identities=13% Similarity=0.086 Sum_probs=129.8
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
+++.||||||| .|+||. +|+|+|++|+|||+|+++.+.+ |+|++. . +.+.+++.. +++++
T Consensus 2 ~~~~aiIlA~G--~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~-~-~~i~~~~~~----~g~~~ 67 (229)
T 1qwj_A 2 PHLAALVLARG--GSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD-H-DEIENVAKQ----FGAQV 67 (229)
T ss_dssp CCEEEEEECCS--CCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEES-C-HHHHHHHHH----TTCEE
T ss_pred CcEEEEEEcCC--CCCCCC------CcccceECCEEHHHHHHHHHHhCCCcCEEEEECC-h-HHHHHHHHH----cCCEE
Confidence 45789999999 999994 5999999999999999999864 666653 2 346666643 35655
Q ss_pred EEecC---CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEE
Q 016989 81 RYLRE---DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGEL 155 (379)
Q Consensus 81 ~~~~~---~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v 155 (379)
..... ....+..+++..+++.+.. .+.+++++||.++ ..+++++++.|.+.+++.++.+.+. .++..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~v~~al~~~~~--~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~v- 142 (229)
T 1qwj_A 68 HRRSSETSKDSSTSLDAIVEFLNYHNE--VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR--HQFRWSEI- 142 (229)
T ss_dssp EECCGGGSSTTCCHHHHHHHHHTTCTT--CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE--CCCEECCC-
T ss_pred EeChhhhcCCCCcHHHHHHHHHHhcCC--CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeec--cChhHhhc-
Confidence 33221 1233445788888887732 3579999999988 5679999999988777765555533 23333332
Q ss_pred EEeCCCCcEEE--eeec------CCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccc
Q 016989 156 VADPDTNELLH--YTEK------PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (379)
Q Consensus 156 ~~d~~~~~v~~--~~ek------p~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
.+ ....+.. +.++ +..+.....++|+|+|+++.| +..
T Consensus 143 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~~~------------------------------- 187 (229)
T 1qwj_A 143 -QK-GVREVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--EMG------------------------------- 187 (229)
T ss_dssp -CS-STTCCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--HTT-------------------------------
T ss_pred -cc-cccccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--ccc-------------------------------
Confidence 11 0001111 1111 112234567999999999887 210
Q ss_pred ccccccccccccCCceEEEEEcc-cchhhcCCccchhhcchHHH
Q 016989 228 VRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 228 ~~l~~d~l~~l~~~~~v~~~~~~-~~w~~i~t~~d~~~a~~~~l 270 (379)
+..+..+..+..+ ++|.+||||+||..++.++.
T Consensus 188 ----------~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~ 221 (229)
T 1qwj_A 188 ----------YLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVL 221 (229)
T ss_dssp ----------CSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHH
T ss_pred ----------cccCCeEEEEECCcccccCCCCHHHHHHHHHHHH
Confidence 0112334322444 68999999999999987664
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-18 Score=149.71 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=130.6
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
|++++.||||||| .|+||+. ..||+|+|++|+|||+|+++.+.+ |+|++......+.+++. ..++.
T Consensus 1 m~~~~~aiIlAaG--~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~---~~~~~ 72 (228)
T 2yc3_A 1 MEKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE---ESIDV 72 (228)
T ss_dssp CTTCEEEEEECCC--CC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTT---TTSSS
T ss_pred CCcceEEEEECCc--cccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHH---HhCCC
Confidence 4456899999999 9999984 679999999999999999999863 66766655433444332 23445
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEE
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELV 156 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 156 (379)
++.++.. ..|..++++.+++.+.. ..+.+++++||.++ ..+++.+++.|.+.+ .++++.+.. + +...
T Consensus 73 ~v~~~~~--~~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~--~----~~~~ 141 (228)
T 2yc3_A 73 DLSFAIP--GKERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVG--AAVLGVPAK--A----TIKE 141 (228)
T ss_dssp EEEEECC--CSSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHS--EEEEEEECC--S----CCCC
T ss_pred cEEEECC--CCCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcC--ceEEEEecc--c----eEEE
Confidence 5655542 36888999999988754 23578999999977 567999999887655 344444432 1 1112
Q ss_pred EeCCCCcEEEeeecCCCcccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccc
Q 016989 157 ADPDTNELLHYTEKPETFVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (379)
Q Consensus 157 ~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (379)
.++ ++.+..+.+++. ..... ..|+|+++. ++.+....... + |+ .+..
T Consensus 142 ~~~-~~~v~~~~~~~~---~~~~~-~~~~f~~~~l~~~~~~~~~~~----~--~~---------------------~~~~ 189 (228)
T 2yc3_A 142 VNS-DSLVVKTLDRKT---LWEMQ-TPQVIKPELLKKGFELVKSEG----L--EV---------------------TDDV 189 (228)
T ss_dssp BCT-TSCBCCCCSCCC---CEEEE-EEEEECHHHHHHHHHHHHHHT----C--CC---------------------CSTT
T ss_pred EcC-CCceEEecCccc---eEEEe-CCcEEEHHHHHHHHHHHHhcC----C--Cc---------------------ccHH
Confidence 232 345544333321 11223 489999764 45544221110 0 11 2333
Q ss_pred cccc-CCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 236 SPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 236 ~~l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
..+. .+.++..+..+..|.+|+||+||..+.+++
T Consensus 190 ~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l 224 (228)
T 2yc3_A 190 SIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (228)
T ss_dssp HHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred HHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence 3322 245666565556799999999999886554
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=146.04 Aligned_cols=207 Identities=15% Similarity=0.141 Sum_probs=135.5
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i 80 (379)
++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.. |+|++.... ..+.+++. +..+
T Consensus 2 ~~~~vIlA~G--~g~R~~~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~------~~~v 70 (223)
T 2xwl_A 2 ATVAVVPAAG--SGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG------GEDS 70 (223)
T ss_dssp CEEEEEECCC--CCGGGTS---SSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC------BTTE
T ss_pred ceEEEEECCc--cCcccCC---CCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc------cCCe
Confidence 4789999999 9999993 679999999999999999999863 666655443 23444331 2334
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEe
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d 158 (379)
.++.. ..+.+++++.+++.++. .+.+++++||.++ ..++.++++.+. .+.+.++++.+.. ++. .. .+
T Consensus 71 ~~~~~--~~~~~~~i~~al~~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~--d~~--~~--~~ 139 (223)
T 2xwl_A 71 VIVSG--GVDRTESVALALEAAGD--AEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPA--DTI--KA--VD 139 (223)
T ss_dssp EEEEC--CSSHHHHHHHHHTTCTT--CSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCS--SCE--EE--EC
T ss_pred EEEcC--CCCHHHHHHHHHHhcCC--CCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecc--cce--EE--Ec
Confidence 44433 24578899999888731 2579999999987 457999999883 2345666665542 222 22 24
Q ss_pred CCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 159 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
++|++..+.+++.. ....+.|+|++..+..+.+... ++ |. .+....+
T Consensus 140 -~~g~~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~~~-----~~--~~---------------------~~~~~~~ 186 (223)
T 2xwl_A 140 -ANGAVLGTPERAGL----RAVQTPQGFHADVLRRAYARAT-----AG--GV---------------------TDDASLV 186 (223)
T ss_dssp -TTSBEEECCCGGGE----EEECSCEEEEHHHHHHHHTTCC-----SC--CC---------------------CCHHHHH
T ss_pred -CCCcEEeecChHHh----eeeeCCcccCHHHHHHHHHHhh-----CC--CC---------------------ccHHHHH
Confidence 36889888887521 1123467888776654432110 00 00 1112222
Q ss_pred c-CCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 239 A-GKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 239 ~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
. .+.++..+..++.|.+|+||+||..+..++
T Consensus 187 ~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l 218 (223)
T 2xwl_A 187 EQLGTPVQIVDGDPLAFKITTPLDLVLAEAVL 218 (223)
T ss_dssp HTTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred HHcCCCEEEEECCcccccccCHHHHHHHHHHH
Confidence 2 135788888888999999999999886554
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-17 Score=156.07 Aligned_cols=177 Identities=16% Similarity=0.244 Sum_probs=130.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc-----------EEEEcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
.++.+|||||| +||||+. ..||+|+||+ |+|||+|+++.+.. +++++.+..+.+++|++++ .
T Consensus 91 ~k~avViLAGG--~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~-~ 164 (488)
T 2i5k_A 91 SKLAVLKLNGG--LGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKY-S 164 (488)
T ss_dssp GGEEEEEECCC--BSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGG-C
T ss_pred CCceEEEEcCC--CcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhc-c
Confidence 46789999999 9999986 8899999999 99999999999764 3445546666789999873 4
Q ss_pred cCCccEEEecCC------------------------CCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee-cCChH
Q 016989 75 ELRIPVRYLRED------------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC-SFPLP 124 (379)
Q Consensus 75 ~~~~~i~~~~~~------------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~-~~dl~ 124 (379)
.+|.++.+..|. .+.|+++++... ++.+.....++++|++||++. ..|+.
T Consensus 165 ~fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~ 244 (488)
T 2i5k_A 165 ANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK 244 (488)
T ss_dssp SSSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH
T ss_pred ccCceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH
Confidence 567777777555 678999998843 344532223689999999966 46786
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCc-eeEEEEeCCCCc--EEEeeecCCC--------cccceeeeeEEEeCHhhHHH
Q 016989 125 EMLDAHRNYGGMGTILVIKVSAESASQ-FGELVADPDTNE--LLHYTEKPET--------FVSDLINCGVYVFTPDIFNA 193 (379)
Q Consensus 125 ~~l~~~~~~~~~~ti~~~~~~~~~~~~-~g~v~~d~~~~~--v~~~~ekp~~--------~~~~~~~~Giy~~~~~~l~~ 193 (379)
++..|.++++++++.+.+.. ++.. ||.+..+ +|+ +..+.+.|.. ......|+|+|+|+.+.++.
T Consensus 245 -~L~~~~~~~a~~t~~v~~~~--~p~~~yG~Iv~~--dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~ 319 (488)
T 2i5k_A 245 -ILNHMIETGAEYIMELTDKT--RADVKGGTLISY--DGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKR 319 (488)
T ss_dssp -HHHHHHHSCCSEEEEEEECC--GGGSSSCEEEEE--TTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHH
T ss_pred -HHHHHHhcCCcEEEEEEEec--CCCCceeEEEEE--CCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHH
Confidence 66888888999999888653 4544 9988775 455 3333334432 12467899999999877654
Q ss_pred h
Q 016989 194 I 194 (379)
Q Consensus 194 l 194 (379)
+
T Consensus 320 ~ 320 (488)
T 2i5k_A 320 L 320 (488)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=139.23 Aligned_cols=184 Identities=14% Similarity=0.173 Sum_probs=122.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.+|||||| .|+||++ ||+|+|++|+|||+|+++.+.. |+|++....+.+.+++. .+++++.
T Consensus 4 ~~~~~iIlA~G--~~~R~g~-----~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~----~~~~~~~ 72 (199)
T 2waw_A 4 SRVTGVVLAAG--YSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVE----LDGLDIV 72 (199)
T ss_dssp CCEEEEEEESS--CCTTTTS-----CGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSC----CTTSEEE
T ss_pred CceEEEEECCC--CCCCCCC-----CEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhc----cCCCEEE
Confidence 45899999999 9999975 9999999999999999999865 66666554444555553 2355554
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
+. +....|++++++.+++.+.. ..+.+++++||.++ ..++.++++. +.++++++...
T Consensus 73 ~~-~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~----------------- 131 (199)
T 2waw_A 73 LV-DDAGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY----------------- 131 (199)
T ss_dssp EC-CCCCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-----------------
T ss_pred EC-CCcccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-----------------
Confidence 42 34457889999999988742 13579999999998 5678888886 44444332211
Q ss_pred CCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 239 (379)
+++- ..-++|+++.+..+..... .. .. ..++...
T Consensus 132 -~g~~----------------~~P~~~~~~~l~~~~~~~~-~~-----------------------~~----~~~l~~~- 165 (199)
T 2waw_A 132 -ANGI----------------GHPFWVSRGVFGDLAELHG-DK-----------------------GV----WRLIESG- 165 (199)
T ss_dssp -TTEE----------------EEEEEEEGGGHHHHHTCSS-TT-----------------------CH----HHHHHSS-
T ss_pred -CCcc----------------cCCEEEcHHHHHHHHhcCC-CH-----------------------HH----HHHHHhC-
Confidence 1110 0114788888776653210 00 00 1222221
Q ss_pred CCceEEEEEc-ccchhhcCCccchhhcchHH
Q 016989 240 GKKQLYTYET-MDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 240 ~~~~v~~~~~-~~~w~~i~t~~d~~~a~~~~ 269 (379)
+.++..+.. .+.|.+|+||+||..+.+++
T Consensus 166 -~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 166 -RHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp -SSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred -cccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 245766766 45899999999999886654
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=137.80 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=80.9
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.+|||||| .|+||.+ ||+|+|++|+|||+|+++.+.. |+|++....+.+.+++.. +++++.
T Consensus 4 ~~~~~iIlA~G--~~~R~g~-----~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~ 72 (197)
T 2wee_A 4 TQITGVVLAAG--RSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL----DGTDVV 72 (197)
T ss_dssp SEEEEEEEECC--CCTTTSS-----CGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC----TTSEEE
T ss_pred CceEEEEECCC--CcccCCC-----CeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc----CCCEEE
Confidence 45899999999 9999964 9999999999999999999864 666655444445555532 345543
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHH
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDA 129 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~ 129 (379)
.. +....|++++++.+++.+.. ..+.+++++||.++ ..+++++++.
T Consensus 73 ~~-~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (197)
T 2wee_A 73 VV-EDVERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV 120 (197)
T ss_dssp EC-C----CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred EC-CCcccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence 32 33456999999999988731 12479999999987 5668888886
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=137.48 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=127.3
Q ss_pred CCCCCCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcc
Q 016989 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 1 m~~~~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
|...| +++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.. |+|++....+.+.+ +..
T Consensus 1 ~~~~~-~~~~~iIlA~G--~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~--- 70 (236)
T 1i52_A 1 MATTH-LDVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL--- 70 (236)
T ss_dssp ----C-CCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG---
T ss_pred CCCCC-CceeEEEECCc--CccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh---
Confidence 55555 45899999999 9999983 579999999999999999999863 66665543322333 221
Q ss_pred cCCc-cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCc
Q 016989 75 ELRI-PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (379)
Q Consensus 75 ~~~~-~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~ 151 (379)
++. .+.++.. ..|..++++.+++.+.. .+.+++++||.++ ...+..+++.+.+.++.. +++.+.. +.
T Consensus 71 -~~~~~v~~~~~--~~g~~~~i~~al~~~~~--~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~--~~-- 140 (236)
T 1i52_A 71 -ANHPQITVVDG--GDERADSVLAGLKAAGD--AQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVR--DT-- 140 (236)
T ss_dssp -GGCTTEEEEEC--CSSHHHHHHHHHHTSTT--CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECC--SC--
T ss_pred -cCCCCEEEECC--CCCHHHHHHHHHHhcCC--CCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEecc--cc--
Confidence 222 3444432 25888999999888742 2579999999987 456888888776554223 3333331 11
Q ss_pred eeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccc
Q 016989 152 FGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL 230 (379)
Q Consensus 152 ~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (379)
+. ..+++++++....+. ..-+..-+.++|+.+.+ +.+...... +. +++ +.
T Consensus 141 ~~--~~~~~~~~i~~~~~~----~~i~~~~~p~~f~~~~l~~~~~~~~~~---g~---~~t--------------d~--- 191 (236)
T 1i52_A 141 MK--RAEPGKNAIAHTVDR----NGLWHALTPQFFPRELLHDCLTRALNE---GA---TIT--------------DE--- 191 (236)
T ss_dssp EE--EECTTSSSEEEEECC----TTCEEEEEEEEEEHHHHHHHHHHHHHT---TC---CCC--------------SH---
T ss_pred EE--EEcCCCCceeeccCh----HhheeeeCCceecHHHHHHHHHHHHhc---CC---Ccc--------------cH---
Confidence 11 123211455433211 11122225567776544 433321100 00 000 00
Q ss_pred cccccccccCCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 231 DQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 231 ~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
..++..+ +.++..+..++.|.+|+||+||..+.+++.
T Consensus 192 -~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~ 228 (236)
T 1i52_A 192 -ASALEYC--GFHPQLVEGRADNIKVTRPEDLALAEFYLT 228 (236)
T ss_dssp -HHHHHHT--TCCCEEEECCTTCCCCCSHHHHHHHHHHHC
T ss_pred -HHHHHHc--CCCEEEEecCccccccCCHHHHHHHHHHHH
Confidence 1122111 356777777778999999999998876553
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=133.02 Aligned_cols=207 Identities=15% Similarity=0.166 Sum_probs=124.2
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHH-HHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEERE-FALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~-i~~~l~~~~~~~~~~i 80 (379)
.+.||||||| .|+||+. ..||+|+|++|+|||+|+++.+.+ |+|++...... +.+++ . ++.++
T Consensus 13 ~~~aiILAaG--~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~----~-~~~~~ 82 (234)
T 1vpa_A 13 MNVAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV----F-HEKVL 82 (234)
T ss_dssp CEEEEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTC----C-CTTEE
T ss_pred cCeEEEEcCc--chhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHh----c-cCCce
Confidence 4799999999 9999985 679999999999999999999863 66666544322 23222 1 22233
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEe
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d 158 (379)
... ....+..++++.+++.+.....+.+++++||.|+ ...+.++++.+.+.+ ..+++.+.. +. ....+
T Consensus 83 ~~~--~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~~~~~~--~~----~~~~~ 152 (234)
T 1vpa_A 83 GIV--EGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATLALKNS--DA----LVRVE 152 (234)
T ss_dssp EEE--ECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEEEEECC--SE----EEEEE
T ss_pred EEe--CCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEEecC--Cc----EEEEC
Confidence 222 1223477889998888743112568899999987 557899998876654 334344431 11 22234
Q ss_pred CCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 159 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
. +| + .+.++. .-+..-.-++|+++.+..+.... + |.+ +. ..++...
T Consensus 153 ~-~g-v-~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~-------~--~~~--------------~~----~~~~~~~ 198 (234)
T 1vpa_A 153 N-DR-I-EYIPRK----GVYRILTPQAFSYEILKKAHENG-------G--EWA--------------DD----TEPVQKL 198 (234)
T ss_dssp T-TE-E-EEECCT----TEEEEEEEEEEEHHHHHHHHTTC-------C--CCS--------------SS----HHHHHTT
T ss_pred C-CC-c-ccCChh----HeeeecCCccccHHHHHHHHHhc-------C--CCC--------------cH----HHHHHHc
Confidence 2 45 5 554431 11111133477776654432210 0 000 00 1112111
Q ss_pred cCCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 239 ~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+.++..+..++.|.+|+||+||..+.+++.
T Consensus 199 --g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 228 (234)
T 1vpa_A 199 --GVKIALVEGDPLCFKVTFKEDLELARIIAR 228 (234)
T ss_dssp --TCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred --CCcEEEEECCchhcCCCCHHHHHHHHHHHh
Confidence 345666666778999999999998876553
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=133.03 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=81.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc--EEEEcccchHHHHHHHHhhcccCCccEEEecCC
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR--IYLVGFYEEREFALYVSSISNELRIPVRYLRED 86 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~--iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 86 (379)
+.+|||||| .|+||++ ||+|+|++|+|||+|+++.+.. ++|++....+.+.+++. .++ +.. ...
T Consensus 3 ~~~iIlAgG--~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~~ivvv~~~~~~~~~~~~~-----~~~-~v~-~~~ 68 (197)
T 3d5n_A 3 IGVIILAAG--EGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDLEKIIIVGKYVNEMLPLLM-----DQI-VIY-NPF 68 (197)
T ss_dssp EEEEEECSC--CTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTSBCCEEECTTHHHHGGGCT-----TSC-EEE-CTT
T ss_pred eEEEEECCc--CcccCCC-----CeeeCEeCceEHHHHHHHHHHhCCEEEEECCCHHHHHHHhc-----CCE-EEE-CCC
Confidence 789999999 9999986 9999999999999999999986 55544443333333322 234 322 223
Q ss_pred CCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCce
Q 016989 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 87 ~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ 137 (379)
...|++++++.+++.+.. .+.+++++||.++ ...++++++.+ +.++++
T Consensus 69 ~~~G~~~si~~al~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 118 (197)
T 3d5n_A 69 WNEGISTSLKLGLRFFKD--YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA 118 (197)
T ss_dssp GGGCHHHHHHHHHHHTTT--SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE
T ss_pred CCCCHHHHHHHHHHhhcc--CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE
Confidence 346999999999988853 2479999999987 45578888766 444443
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=144.25 Aligned_cols=181 Identities=13% Similarity=0.211 Sum_probs=134.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc-----------------EEEEcccchHHHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-----------------IYLVGFYEEREFA 66 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~-----------------iiv~~~~~~~~i~ 66 (379)
.++.+|||||| .||||+. ..||+|+|| .|+|+|+++++.+.. ++++.....+.++
T Consensus 101 ~kvavViLAGG--~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~ 175 (505)
T 1jv1_A 101 NKVAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTK 175 (505)
T ss_dssp TCEEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHH
T ss_pred CceEEEEEcCC--ccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHH
Confidence 46899999999 9999975 889999999 799999999887421 5556666566799
Q ss_pred HHHHhhcccCCc---cEEEecC---------------------CCCCChHHHHHHHHH-----hhccCCCCeEEEEcCCe
Q 016989 67 LYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYNFRD-----LIMEDNPSHIFLLNCDV 117 (379)
Q Consensus 67 ~~l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~~~-----~i~~~~~~~~lv~~gD~ 117 (379)
+|+++. ..+|+ +|.+..| ..+.|+++.+..+.. .+.....++++|+++|+
T Consensus 176 ~~f~~~-~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn 254 (505)
T 1jv1_A 176 EFFTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDN 254 (505)
T ss_dssp HHHHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTB
T ss_pred HHHHhh-hhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCc
Confidence 999873 45676 3665543 257899988876542 22222236899999999
Q ss_pred e-ecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc--EEEeeecCCC----------cccceeeeeEE
Q 016989 118 C-CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE--LLHYTEKPET----------FVSDLINCGVY 184 (379)
Q Consensus 118 i-~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~--v~~~~ekp~~----------~~~~~~~~Giy 184 (379)
+ ...+...++..|..+++++++.+.+.. .....+|.+..+ +|+ ++.+.|+|.. ...++.|+|+|
T Consensus 255 ~L~~~~d~~~lg~~~~~~~~~~~~v~~k~-~~~e~~Gvl~~~--dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~ 331 (505)
T 1jv1_A 255 ILVKVADPRFIGFCIQKGADCGAKVVEKT-NPTEPVGVVCRV--DGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANH 331 (505)
T ss_dssp TTCCTTCHHHHHHHHHTTCSEEEEEEECC-STTCSCCEEEEE--TTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEE
T ss_pred cccccchHHHHHHHHHcCCCEEEEEEEcc-CCccCcceEEEE--CCeEEEEEEeeCCHHHhhhcccccccccceeeEEEE
Confidence 7 577777899999999999998887632 357888988876 354 4556666541 12468999999
Q ss_pred EeCHhhHHHhhc
Q 016989 185 VFTPDIFNAIQG 196 (379)
Q Consensus 185 ~~~~~~l~~l~~ 196 (379)
+|+.++++.+.+
T Consensus 332 ~f~l~~L~~i~~ 343 (505)
T 1jv1_A 332 FFTVPFLRDVVN 343 (505)
T ss_dssp EEEHHHHHHHHH
T ss_pred EecHHHHHHHHH
Confidence 999998887754
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-16 Score=134.71 Aligned_cols=103 Identities=21% Similarity=0.296 Sum_probs=76.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
+++++.+|||||| .|+||+ .||+|+|++|+|||+|+++.+.. |+|++..... +++ . ++++
T Consensus 11 ~~~~~~~iILA~G--~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~~~~i~vv~~~~~~---~~~---~---~~~~ 74 (201)
T 2e8b_A 11 LSKVNTCYVLAGG--KSKRFG-----EDKLLYEIKGKKVIERVYETAKSVFKEVYIVAKDREK---FSF---L---NAPV 74 (201)
T ss_dssp SCSCCEEEEEEES--SCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCSGG---GGG---G---TCCE
T ss_pred cccCceEEEECCC--CCccCC-----CCcccceECceEHHHHHHHHHHHhCCEEEEEeCcHHH---hhc---C---CceE
Confidence 4456799999999 999998 49999999999999999999875 6666554332 111 1 3444
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-c-CChHH-HH
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPE-ML 127 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~-~l 127 (379)
.. .+....|++++++.+.+.+.. +.+++++||.++ + ..++. ++
T Consensus 75 v~-~~~~~~g~~~~i~~al~~~~~---~~~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 75 VL-DEFEESASIIGLYTALKHAKE---ENVFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp EE-CCCSSCCHHHHHHHHHHHCSS---SEEEEEETTCTTCCHHHHHHHHH
T ss_pred Ee-cCCCCCCcHHHHHHHHHHcCC---CCEEEEeCCcCcCCHHHHHHHHh
Confidence 22 233457999999999988753 479999999988 3 33555 55
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=127.08 Aligned_cols=211 Identities=15% Similarity=0.176 Sum_probs=134.5
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i 80 (379)
.+.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+ |+|++.... +.+++++.. .+
T Consensus 7 ~~~aIIlAaG--~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-------~v 74 (231)
T 3q80_A 7 EVVAIVPAAG--SGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-------RA 74 (231)
T ss_dssp CEEEEEECCC--CCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-------GC
T ss_pred ceEEEEECCC--CCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-------Ce
Confidence 3789999999 9999986 789999999999999999999863 666655443 334444432 23
Q ss_pred EEecCCCCCChHHHHHHHHHhhccC-CCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~-~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
.++. ...+..++++.+++.+... ..+.++++.||.|+ ...+.++++.+.+ +.++.+++.+.. ++- + ..
T Consensus 75 ~~v~--gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~--dt~--~--~~ 145 (231)
T 3q80_A 75 MIVA--GGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLS--DTI--K--AV 145 (231)
T ss_dssp EEEE--CCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCS--SCE--E--EE
T ss_pred EEEc--CCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEecc--CCE--E--EE
Confidence 3333 2234578999999888642 13689999999999 5668999998765 245666666653 222 1 23
Q ss_pred eCCCCcEEEeeecCCCcccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccccc
Q 016989 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (379)
+ +++.|..+.+.. .-..+.+ -+.|+.+.+ +.+......+ ++ + |+| |...
T Consensus 146 ~-~~g~v~~~~~r~---~l~~~qT-Pq~F~~~~L~~a~~~~~~~n-~~-~--~~T---------------------D~~~ 195 (231)
T 3q80_A 146 D-ANGVVLGTPERA---GLRAVQT-PQGFTTDLLLRSYQRGSLDL-PA-A--EYT---------------------DDAS 195 (231)
T ss_dssp C-TTSBEEECCCGG---GEEEECS-CEEEEHHHHHHHHHHHTC---------CCS---------------------SSHH
T ss_pred c-CCCcEEEecchh---heEEEcC-CcEEEHHHHHHHHHHHHhhc-CC-C--CCC---------------------cHHH
Confidence 4 367777655431 1112233 478887654 4544332211 11 1 222 2222
Q ss_pred ccc-CCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 237 PLA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 237 ~l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
.+. .+.++..++-+..+..|.+|+|+..+..++
T Consensus 196 ~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 196 LVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp HHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 222 256777777766789999999998886544
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=132.70 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=117.6
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|++.||||||| .|+||++ . ||+|+|++|+|||+|+++. .. |+|++.. . +.+ +. ..+ +.+
T Consensus 24 M~~~aiILAgG--~s~Rm~~---~-~K~l~~i~gkpli~~~l~~-~~~~~~ivvv~~~-~--~~~-~~----~~~--v~~ 86 (236)
T 2px7_A 24 MEVSVLIPAAG--NGLRLGR---G-PKAFLQVGGRTLLEWTLAA-FRDAAEVLVALPP-G--AEP-PK----GLG--AVF 86 (236)
T ss_dssp CCCEEEEECCC------------C-CGGGCBCSSSBHHHHHHHH-TTTCSEEEEEECT-T--CCC-CT----TCS--CEE
T ss_pred CceEEEEEcCC--CCccCCC---C-CCeEEEECCEEHHHHHHHh-cCCCCeEEEEeCH-H--HHH-hh----cCC--cEE
Confidence 45679999999 9999986 5 9999999999999999998 44 6666553 1 111 11 112 334
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
+.. ..|...+++.+++.+.. +.+++++||.++ ...+..+++.+.+.+ ..+++.+.. ++. . ..+
T Consensus 87 ~~~--~~~~~~~i~~al~~~~~---~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~--~~~--~--~~~-- 151 (236)
T 2px7_A 87 LEG--GATRQASVARLLEAASL---PLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVP--DTL--M--APE-- 151 (236)
T ss_dssp EEC--CSSHHHHHHHHHHHCCS---SEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECC--SEE--E--EEC--
T ss_pred EeC--CCchHHHHHHHHHHcCC---CeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecC--CcE--E--Eec--
Confidence 432 34688899999887752 579999999987 456899998876653 344444431 111 1 123
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 239 (379)
+|++..+.++.. ..... ..++|+++.+. .+...... + + |+++ . ..++..
T Consensus 152 ~G~v~~~~~~~~---~~~~~-~~~~f~~~~l~~~~~~~~~~---g-~--~~~d--------------~----~~ll~~-- 201 (236)
T 2px7_A 152 GEAYGRVVPREA---FRLVQ-TPQGFFTALLREAHAYARRK---G-L--EASD--------------D----AQLVQA-- 201 (236)
T ss_dssp SSSCEEEECGGG---CEEEC-SCEEEEHHHHHHHHHHHHHH---T-C--CCSS--------------H----HHHHHH--
T ss_pred CCeEEecCChHh---hcccc-CCeEEcHHHHHHHHHHHHhc---C-C--Cchh--------------H----HHHHHH--
Confidence 567766555321 11122 35677877553 33321100 0 0 0010 0 112221
Q ss_pred CCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 240 ~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
.+.++..+..++.|.+|+||+||..+.+++
T Consensus 202 ~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 231 (236)
T 2px7_A 202 LGYPVALVEGEATAFKITHPQDLVLAEALA 231 (236)
T ss_dssp TTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred cCCcEEEEECCccccCCCCHHHHHHHHHHH
Confidence 134677777777899999999999886554
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=143.51 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=48.7
Q ss_pred EEEEcCCeeecC--ChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC-CCcEEEeeecCCCccc-ceeeeeEEE
Q 016989 110 IFLLNCDVCCSF--PLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD-TNELLHYTEKPETFVS-DLINCGVYV 185 (379)
Q Consensus 110 ~lv~~gD~i~~~--dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~-~~~v~~~~ekp~~~~~-~~~~~Giy~ 185 (379)
=|+-.+|+++.+ +|.++++.|. +++.. .+++..+|+..++.. +++| .|.|||+.... .+.++|+|+
T Consensus 13 ~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI 82 (374)
T 2iu8_A 13 GLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAII 82 (374)
T ss_dssp --------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEE
T ss_pred CcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEE
Confidence 466679999975 8999999885 35543 246778888777642 3566 99999985433 567999999
Q ss_pred eCHhhHHH
Q 016989 186 FTPDIFNA 193 (379)
Q Consensus 186 ~~~~~l~~ 193 (379)
|++++++.
T Consensus 83 ~~~~~l~~ 90 (374)
T 2iu8_A 83 ISRTQFQK 90 (374)
T ss_dssp EEHHHHHT
T ss_pred eChhHhhh
Confidence 99988753
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-15 Score=128.26 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=84.6
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|+||||||| .|+||++ .||+|+|++|+|||+|+++.+.+ |+|++....+.+.+++... ..+...+.++
T Consensus 1 m~aiIlA~G--~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~ 73 (196)
T 3rsb_A 1 MDALIMAGG--KGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSA-YKDYKNIVVI 73 (196)
T ss_dssp CEEEEEC------CGGGG----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHH-TTTTTEEEE-
T ss_pred CEEEEECCC--CCCcCCC----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhh-ccCCCCEEEE
Confidence 589999999 9999997 79999999999999999999875 7777765555688888652 1111234333
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHh-----cCCceEEEEEEe
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN-----YGGMGTILVIKV 144 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~-----~~~~~ti~~~~~ 144 (379)
. ....|++++++.+++.+ . +.+++++||.++ ..+++++++.+.+ .+.+..+.+.+.
T Consensus 74 ~-~~~~g~~~si~~al~~~-~---~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~ 136 (196)
T 3rsb_A 74 D-TSGKGYIEDLNECIGYF-S---EPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPK 136 (196)
T ss_dssp --------CCCCCTTTTTC-S---SCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEET
T ss_pred E-CCCCCcHHHHHHHHHhC-C---CCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEc
Confidence 3 34668888888888877 2 469999999988 5679999999876 555555555554
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-14 Score=121.23 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=82.8
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc--EEEEcccchHHHHHHHHhhcccCCccEEEecCC
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR--IYLVGFYEEREFALYVSSISNELRIPVRYLRED 86 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~--iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 86 (379)
|.+|||||| .|+||+. ||+|+|++|+|||+|+++.+.. |+|++... +.+..+. ..+++++... ..
T Consensus 1 m~aiILAgG--~s~Rmg~-----~K~ll~~~G~pli~~~~~~l~~~~vvvv~~~~-~~~~~~~----~~~~~~~v~d-~~ 67 (208)
T 3ngw_A 1 MKVAVLVGG--VGRRIGM-----EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDE-KQAEKLS----SRYEAEFIWD-LH 67 (208)
T ss_dssp CEEEEECCC--CCTTTTS-----CGGGCEETTEEHHHHHHHHHTTSEEEEECSSH-HHHHHHH----TTSCSCEECC-TT
T ss_pred CEEEEECCC--chhhCCC-----CCcccEECCeeHHHHHHHHhcCCCEEEEECCH-HHHHHHH----HhcCCeEEec-CC
Confidence 589999999 9999984 9999999999999999999986 67666543 2233322 2245554332 22
Q ss_pred CCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEE
Q 016989 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTI 139 (379)
Q Consensus 87 ~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti 139 (379)
...|...+++.+++.+ . +.+ +++||+|+ ...+..+++.+.+.++++++
T Consensus 68 ~~~G~~~si~~gl~~~-~---~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 68 KGVGSIAGIHAALRHF-G---SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp CCCSHHHHHHHHHHHH-S---SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCChHHHHHHHHHHc-C---CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 3458889999999888 3 467 99999998 44578888877654555433
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=119.78 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=79.1
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+++.+|||||| .|+||+ ..||+|+|++|+|||+|+++.+.. |+|++....+. +. .+++++..
T Consensus 5 m~~~~iILAgG--~s~Rmg----~~~K~ll~i~G~pli~~~l~~l~~~~~~ivvv~~~~~~~---~~-----~~~~~~v~ 70 (201)
T 1e5k_A 5 TTITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEI---YQ-----ASGLKVIE 70 (201)
T ss_dssp CSEEEEEECCC--CCSSSC----SSCGGGSEETTEEHHHHHHHHHHHHCSCEEEECSSSHHH---HH-----TTSCCEEC
T ss_pred CcceEEEEcCC--CCCcCC----CCCCceeeECceeHHHHHHHHHHhhCCEEEEEcCCcHHH---Hh-----hcCCeEEe
Confidence 56899999999 999998 259999999999999999999865 77776654332 21 13454422
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHH
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDA 129 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~ 129 (379)
.......|++++++.+++.+.. +.+++++||.++ . ..++.+++.
T Consensus 71 ~~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 71 DSLADYPGPLAGMLSVMQQEAG---EWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp CCTTCCCSHHHHHHHHHHHCCS---SEEEEEETTCTTCCTTHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHhCCC---CcEEEEeCCcCcCCHHHHHHHHhh
Confidence 2222336999999999988753 479999999977 4 447888765
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=129.34 Aligned_cols=178 Identities=13% Similarity=0.111 Sum_probs=124.8
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc-----------EEEEcccchHHHHHHHH-hhcc
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVS-SISN 74 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~-~~~~ 74 (379)
++.+|||||| +||||+. ..||+|+||+ |+|+|++.++.+.. ++.+..+..+.+++|++ +. .
T Consensus 75 k~avViLAGG--lGTRLg~---~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~-~ 148 (505)
T 2oeg_A 75 STVVLKLNGG--LGTGMGL---CDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARY-P 148 (505)
T ss_dssp TEEEEEEECC--CCGGGTC---CSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHC-H
T ss_pred cceEEEEcCC--cccccCC---CCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhh-h
Confidence 6789999999 9999994 8899999999 99999999999874 45555665667899997 53 3
Q ss_pred cCCc---cEE-E---------------e-------cCCCCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee-cCC
Q 016989 75 ELRI---PVR-Y---------------L-------REDKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC-SFP 122 (379)
Q Consensus 75 ~~~~---~i~-~---------------~-------~~~~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~-~~d 122 (379)
.+|+ +|. | + .+..+.|+++.+... ++.+.....++++|+++|++. ..|
T Consensus 149 ~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D 228 (505)
T 2oeg_A 149 WLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATID 228 (505)
T ss_dssp HHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCC
T ss_pred ccCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccC
Confidence 3455 232 2 0 112356999888754 343322223589999999987 467
Q ss_pred hHHHHHHHHhcCCceEEEEEEeCCCCC-CceeEEEEeC-----CCCc---------EEEeeecCCC--------ccccee
Q 016989 123 LPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADP-----DTNE---------LLHYTEKPET--------FVSDLI 179 (379)
Q Consensus 123 l~~~l~~~~~~~~~~ti~~~~~~~~~~-~~~g~v~~d~-----~~~~---------v~~~~ekp~~--------~~~~~~ 179 (379)
+ .++..|.++++++++.+.+.. .+ ..+|.+..+. .+|+ ++.+.+-|.. ..-.+.
T Consensus 229 ~-~llg~~~~~~ad~~~~v~~k~--~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~ 305 (505)
T 2oeg_A 229 K-RVLAYMEKEKIDFLMEVCRRT--ESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFF 305 (505)
T ss_dssp H-HHHHHHHHHTCSEEEEEEECC--TTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEE
T ss_pred H-HHHHHHHhcCCcEEEEEEEec--CCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcccCccccCee
Confidence 7 899999999999999888764 33 4678776621 2466 3444443332 123457
Q ss_pred eeeEEEeCHhhHHHh
Q 016989 180 NCGVYVFTPDIFNAI 194 (379)
Q Consensus 180 ~~Giy~~~~~~l~~l 194 (379)
++..++|+-+.++.+
T Consensus 306 Ninn~~~~l~~l~~~ 320 (505)
T 2oeg_A 306 NTNNLWIRLPVLLET 320 (505)
T ss_dssp EEEEEEEEHHHHHHH
T ss_pred EEEEEEEEHHHHHHH
Confidence 999999997766544
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=126.81 Aligned_cols=116 Identities=12% Similarity=0.221 Sum_probs=84.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
+++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.+ |+|++. ..+.+.+++ .. +
T Consensus 2 mki~aIILAaG--~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~----~~----v 67 (371)
T 1w55_A 2 SEMSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFT----KN----Y 67 (371)
T ss_dssp CCEEEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTC----SS----S
T ss_pred CccEEEEECCC--CCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHh----CC----C
Confidence 45899999999 9999985 679999999999999999999863 666666 333333222 11 3
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEE
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIK 143 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~ 143 (379)
.++. ...|..++++.+++.+. .+.+++++||.|+ ...++++++.+.+.+ .++.+.+
T Consensus 68 ~~v~--~g~g~~~sv~~aL~~l~---~d~vlv~~~D~Pli~~~~i~~li~~~~~~~--a~i~~~~ 125 (371)
T 1w55_A 68 EFIE--GGDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKAD--CITPALK 125 (371)
T ss_dssp EEEE--CCSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGCS--EEEEEEC
T ss_pred EEEe--CCCChHHHHHHHHHhcC---CCeEEEEeCCcccCCHHHHHHHHHHHHhcC--CEEEEEE
Confidence 3332 24578899999988775 2579999999988 456888888776543 4444444
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=115.54 Aligned_cols=181 Identities=16% Similarity=0.250 Sum_probs=131.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcC-------------c-----EEEEcccchHHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACK-------------R-----IYLVGFYEEREF 65 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~-------------~-----iiv~~~~~~~~i 65 (379)
.++.+|+|||| .||||+. ..||+|+|| .|+|++++.++.+. . ++.++....+.+
T Consensus 34 gkvavvlLAGG--~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t 108 (405)
T 3oc9_A 34 GKTALITPAGG--QGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEI 108 (405)
T ss_dssp TCEEEEEECCS--BCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHH
T ss_pred CceEEEEecCC--CcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHH
Confidence 46899999999 9999976 899999999 99999999998773 1 556666666679
Q ss_pred HHHHHhhcccCCc---cEEEecC---------------------CCCCChHHHHHHHH-----HhhccCCCCeEEEEcCC
Q 016989 66 ALYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYNFR-----DLIMEDNPSHIFLLNCD 116 (379)
Q Consensus 66 ~~~l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~~-----~~i~~~~~~~~lv~~gD 116 (379)
.+|+++. ..+|+ .+.+..| ..+.|+++.+.... +.+....-+++++.+.|
T Consensus 109 ~~~f~~~-~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvD 187 (405)
T 3oc9_A 109 NNYFKEH-QYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVD 187 (405)
T ss_dssp HHHHHHT-GGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHhC-cccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCC
Confidence 9999874 44565 3554332 23678887766532 22333333589999999
Q ss_pred e-eecCChHHHHHHHHhcCCceEEEEEEeCCCCC-CceeEEEEeCCCCcEEEeeecCCC---------cccceeeeeEEE
Q 016989 117 V-CCSFPLPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADPDTNELLHYTEKPET---------FVSDLINCGVYV 185 (379)
Q Consensus 117 ~-i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~-~~~g~v~~d~~~~~v~~~~ekp~~---------~~~~~~~~Giy~ 185 (379)
+ +.......++..|.++++++++-+.+.. .+ ...|.+...+...+|+.+.+.|.. ..-+..|+++|+
T Consensus 188 N~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~--~~dek~Gvl~~~dg~~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~ 265 (405)
T 3oc9_A 188 NILCKDVDPNMIGYMDLLQSEICIKIVKKG--FKEEKVGVLVKEQERIKVVEYTELTDELNKQLSNGEFIYNCGHISING 265 (405)
T ss_dssp BTTCCSSCHHHHHHHHHTTCSEEEEEEECC--STTCSCCEEEEETTEEEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEE
T ss_pred CcccccCCHHHHHHHHHcCCCEEEEEEECC--CCCCccceEEEECCeeEEEEEeeCCHHHhhcCCCCceeeccceeEeee
Confidence 9 5578888999999999999988877753 33 678887764222367777776543 123467889999
Q ss_pred eCHhhHHHhh
Q 016989 186 FTPDIFNAIQ 195 (379)
Q Consensus 186 ~~~~~l~~l~ 195 (379)
|+.++++.+.
T Consensus 266 fs~~fL~~i~ 275 (405)
T 3oc9_A 266 YSTSFLEKAA 275 (405)
T ss_dssp EEHHHHHHHT
T ss_pred cCHHHHHHhh
Confidence 9999987664
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=115.27 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=67.7
Q ss_pred CCceEEEEEcccc----hhhcCCccchhhcchHHHHhhhhcCCccc-------c---CCCCCCCeEEecCeEECCCcEEC
Q 016989 240 GKKQLYTYETMDF----WEQIKTPGMSLKCSGLYLAQFRLTSPNLL-------A---SGDGTKNATIIGDVYVHPSAKIH 305 (379)
Q Consensus 240 ~~~~v~~~~~~~~----w~~i~t~~d~~~a~~~~l~~~~~~~~~~~-------~---~~~~~~~~~i~~~~~i~~~~~i~ 305 (379)
+..++++|...++ |.++++ ++++++.++..+........ . .....+++.|.+++.||+++.|+
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~ 113 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIM 113 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEEC
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEEC
Confidence 4456677666655 999988 66666655543322111100 0 01123556666666666666665
Q ss_pred CCCC--------CCcEEe-ceEECCCCEECCCcEEeecccc-----cccccceEECCCcEECCCcEE-eccEECCCceec
Q 016989 306 PTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGDF-----NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLN 370 (379)
Q Consensus 306 ~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~-----~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~ 370 (379)
+++. ++|.|+ +|+|+++|.||++|+|+.+.+. ......++|+++|.||.+|.| .+++||++++|+
T Consensus 114 ~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~ 193 (240)
T 3r8y_A 114 MNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVA 193 (240)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEEC
Confidence 5444 445554 5555555555555555544211 111122566666666666666 455555555555
Q ss_pred cc
Q 016989 371 VS 372 (379)
Q Consensus 371 ~~ 372 (379)
++
T Consensus 194 ~g 195 (240)
T 3r8y_A 194 AG 195 (240)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=118.20 Aligned_cols=182 Identities=17% Similarity=0.272 Sum_probs=127.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc-------------------EEEEcccchHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------------------IYLVGFYEERE 64 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~-------------------iiv~~~~~~~~ 64 (379)
.++.+|||||| .||||+. ..||+|+||+ |+|+|++.++.+.. ++++..+..+.
T Consensus 102 gkvavvlLaGG--~GTRLg~---~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~ 176 (486)
T 2yqc_A 102 GEVAVLLMAGG--QGTRLGS---SAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNA 176 (486)
T ss_dssp TCEEEEEEEES--BCGGGTC---SSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHH
T ss_pred CCeEEEEEcCC--ccccCCC---CCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHH
Confidence 36899999999 9999964 8899999999 99999999987641 55566666667
Q ss_pred HHHHHHhhcccCCcc---EEEecCC----------------------CCCChHHHHHHHH-----HhhccCCCCeEEEEc
Q 016989 65 FALYVSSISNELRIP---VRYLRED----------------------KPHGSAGALYNFR-----DLIMEDNPSHIFLLN 114 (379)
Q Consensus 65 i~~~l~~~~~~~~~~---i~~~~~~----------------------~~~g~~~al~~~~-----~~i~~~~~~~~lv~~ 114 (379)
+++|+++. ..+|++ |.+..|. .+.|+++.+.... +.+....-+++.+.+
T Consensus 177 t~~~~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~ 255 (486)
T 2yqc_A 177 TESFFIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYC 255 (486)
T ss_dssp HHHHHHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEE
T ss_pred HHHHHhhc-cccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEEC
Confidence 99999873 445652 3322211 3678888776542 233222335788888
Q ss_pred CCeeec--CChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC--cEEEeeecCCC------------cccce
Q 016989 115 CDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN--ELLHYTEKPET------------FVSDL 178 (379)
Q Consensus 115 gD~i~~--~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--~v~~~~ekp~~------------~~~~~ 178 (379)
.|+++- .| ..++..|..+++++++.+.+.. ......|.+.....+| +|+.|.|+|.. ...+.
T Consensus 256 vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~-~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~ 333 (486)
T 2yqc_A 256 VDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKR-DANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRA 333 (486)
T ss_dssp TTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECC-STTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCE
T ss_pred CCCceeeccC-HHHHHHHHHcCCCEEEEEEEcC-CCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccc
Confidence 998883 34 4578888888999888777652 2336778777541134 47777787631 12467
Q ss_pred eeeeEEEeCHhhHHH-hhc
Q 016989 179 INCGVYVFTPDIFNA-IQG 196 (379)
Q Consensus 179 ~~~Giy~~~~~~l~~-l~~ 196 (379)
.|+++|+|+.++++. +.+
T Consensus 334 ~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 334 ANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEEEEEEEEHHHHHHHHHH
T ss_pred eeEEEEEEeHHHHHHHHHh
Confidence 899999999998876 543
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.9e-13 Score=127.55 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEc----CCeeecCChHHHHHHHHhc--C---------CceEEE
Q 016989 76 LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN----CDVCCSFPLPEMLDAHRNY--G---------GMGTIL 140 (379)
Q Consensus 76 ~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~----gD~i~~~dl~~~l~~~~~~--~---------~~~ti~ 140 (379)
.|..+.+...+.+++++.+++.+-+.+. .++|+. +|.+.+.++.+++..|.+. + ...++.
T Consensus 111 ~g~~vt~~~~~~pL~~a~~i~~~d~~~~-----~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~ 185 (496)
T 3c8v_A 111 KGQHFVCDGKMIPLHDDEVITIKDSFLN-----KTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVD 185 (496)
T ss_dssp TTCEEEETTEEEECSSCCEEEEESCEEE-----SCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEE
T ss_pred cCCEEEEEecccchhHhhhHHhhhhcCC-----ceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceee
Confidence 4566777666677888877544333221 137777 5887777777777766652 2 123333
Q ss_pred EEEeCCCCC--CceeEEEEeCCCCcEEEeeecCCCc--ccceeeeeEEEeCHhhHHHh
Q 016989 141 VIKVSAESA--SQFGELVADPDTNELLHYTEKPETF--VSDLINCGVYVFTPDIFNAI 194 (379)
Q Consensus 141 ~~~~~~~~~--~~~g~v~~d~~~~~v~~~~ekp~~~--~~~~~~~Giy~~~~~~l~~l 194 (379)
+.... ++ ..++.+. .+++....++|... ..+.....+|.|.++.++.+
T Consensus 186 L~~l~--d~li~~~~~~~----~g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~ 237 (496)
T 3c8v_A 186 LSTIH--NSVVRYFSYVQ----TGELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKY 237 (496)
T ss_dssp SCEEE--SCEECTTCEEE----SSEEESCEECTTEEEEECTTSEEEEEECCHHHHTTT
T ss_pred HHHHH--HHHHHHHhhhc----CCceEEeeecCCceecccccccceEEEcCHHHHHHH
Confidence 33332 23 4555442 46777777776521 22334556999998777644
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=97.53 Aligned_cols=89 Identities=21% Similarity=0.210 Sum_probs=60.2
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeec----ccccccc-cceEECCCcEECCCcEEe
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAE----GDFNAKL-GITILGEAVGVEDEVVVT 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~----~~~~~~~-~~sii~~~~~i~~~~~i~ 359 (379)
.++.|++++.|+.++.|+++|. .++.|. +++||++|.||+++.|.+. ....+.+ ++|.||.+|.|.+++.|.
T Consensus 108 ~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig 187 (240)
T 3r8y_A 108 DNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVG 187 (240)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEEC
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEEC
Confidence 4445545555555555555555 466786 8999999999988777430 0000111 129999999999999994
Q ss_pred -ccEECCCceeccccccc
Q 016989 360 -NSIVLPNKTLNVSVHQE 376 (379)
Q Consensus 360 -~~ii~~~~~i~~~~~~~ 376 (379)
+|+|++++.|..++++.
T Consensus 188 ~~~~I~~gsvV~~~vp~~ 205 (240)
T 3r8y_A 188 KGAVVAAGAVVTEDVPPY 205 (240)
T ss_dssp TTCEECTTCEECSCBCTT
T ss_pred CCCEECCCCEECCCcCCC
Confidence 89999999998887743
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-09 Score=90.28 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=36.8
Q ss_pred CCCeEEecCeEEC--CCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEeecccccccccc-eEECCCcEECC
Q 016989 287 TKNATIIGDVYVH--PSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGI-TILGEAVGVED 354 (379)
Q Consensus 287 ~~~~~i~~~~~i~--~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~-sii~~~~~i~~ 354 (379)
++++.+.+++.|| +++.|+++|+ +++.|. +++|+++|.||++|+|..+ +.+.. ++||++|.||.
T Consensus 79 ~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~----~~i~~~~~Ig~~~~Ig~ 154 (194)
T 3bfp_A 79 HKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVG----AKCAGNVKIGKNCFLGI 154 (194)
T ss_dssp CTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT----CEECTTCEECTTCEECT
T ss_pred CCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCC----CEECCCcEECCCCEEcC
Confidence 3444444444444 4444444333 334443 4444444444444444433 11211 56666666666
Q ss_pred CcEEe-ccEECCCceeccc
Q 016989 355 EVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 355 ~~~i~-~~ii~~~~~i~~~ 372 (379)
++.|. ++.|++++.|+.+
T Consensus 155 ~~~i~~~~~Ig~~~~Igag 173 (194)
T 3bfp_A 155 NSCVLPNLSLADDSILGGG 173 (194)
T ss_dssp TCEECTTCEECTTCEECTT
T ss_pred CCEECCCCEECCCCEECCC
Confidence 65552 4444444444443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-09 Score=92.06 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=27.0
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++||++|.|++++.|.++ ++||++|.||.+|.|.+++||+++.|+.++
T Consensus 112 ~~IG~~v~Ig~~~~I~~~---------v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags 159 (213)
T 3kwd_A 112 VWIGDNVSITHMALIHGP---------AYIGDGCFIGFRSTVFNARVGAGCVVMMHV 159 (213)
T ss_dssp EEECTTCEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECSSC
T ss_pred eEECCCcEECCCcEEcCC---------CEECCCCEECCCCEEeCcEECCCCEEcCCC
Confidence 444444444444444443 666666666666666556666666665544
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-09 Score=88.01 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=26.2
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEec----eEECCCCEECCCcEEe
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVTN----AIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~----s~ig~~~~ig~~~~i~ 332 (379)
.+++.+.+++.||+++.|+++|. |.. ++||++|.|+++|.|.
T Consensus 22 ~~~~~i~~~v~IG~~~~I~~~~~----i~~~~~~v~IG~~~~I~~~~~I~ 67 (173)
T 1xhd_A 22 ADYVTITGDVYVGEESSIWFNTV----IRGDVSPTIIGDRVNVQDQCTLH 67 (173)
T ss_dssp CTTCEEEEEEEECTTCEECTTCE----EEEEEEEEEECTTCEECTTCEEE
T ss_pred CCCCEEECCEEECCCcEEcCCcE----EecCCCeEEECCCCEECCCCEEE
Confidence 45566666666777777765543 432 5666666666666665
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-09 Score=89.24 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe-c---eEECCCCEECCCcEE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT-N---AIVGWKSSIGRWSRV 331 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~---s~ig~~~~ig~~~~i 331 (379)
.+++.+.+++.||+++.|+++|. |. + +.||++|.|+++|.|
T Consensus 25 ~~~~~i~~~v~IG~~~~I~~~~~----i~~~~~~i~IG~~~~I~~~~~I 69 (187)
T 3r3r_A 25 DTSSVVIGDVRLADDVGIWPLVV----IRGDVNYVAIGARTNIQDGSVL 69 (187)
T ss_dssp CTTCEEEEEEEECTTCEECTTCE----EEEEEEEEEECTTCEECTTCEE
T ss_pred CCCCEEECceEECCCCEECCCcE----EEcCCccEEECCCCEECCCCEE
Confidence 35555556666666666665543 32 2 355555555555555
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-09 Score=89.81 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEe
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~ 332 (379)
.+++.|.+++.||+++.|+++|. |. +.+||++|.|+++|.|.
T Consensus 43 ~~~~~i~~~v~IG~~~~I~~~~~----I~~~~~~i~IG~~~~I~~~~~I~ 88 (191)
T 3ixc_A 43 AGNARIIGDVCIGKNASIWYGTV----LRGDVDKIEVGEGTNIQDNTVVH 88 (191)
T ss_dssp CTTCEEEEEEEECTTCEECTTCE----EEEEEEEEEECTTCEECTTCEEC
T ss_pred CCCCEEeCCcEECCCCEECCCCE----EecCCCCeEECCCCEECCCCEEe
Confidence 35556666666666666665543 32 23555555555555554
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-09 Score=91.33 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=31.4
Q ss_pred ceEECCCCEECCCcEEeeccc-c---------------cccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGD-F---------------NAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~-~---------------~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+++||++|.||++|.|.+..- + ......++||++|.||.+|.|. ++.|+++++|+.+
T Consensus 91 ~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~g 164 (205)
T 3vbi_A 91 GIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAM 164 (205)
T ss_dssp EEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred cEEECCCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCC
Confidence 377788888888877732100 0 0001226677777666666663 5555555555544
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-09 Score=97.92 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=7.4
Q ss_pred eEECCCcEECCCcEE
Q 016989 344 TILGEAVGVEDEVVV 358 (379)
Q Consensus 344 sii~~~~~i~~~~~i 358 (379)
++||++|.||.+|.|
T Consensus 201 v~IGd~v~Ig~~~~I 215 (341)
T 3eh0_A 201 VIIGDRVEIGACTTI 215 (341)
T ss_dssp EEECSSCEECTTCEE
T ss_pred EEECCCcEECCccEe
Confidence 444444555555544
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.7e-09 Score=90.89 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=34.0
Q ss_pred eEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 290 ATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
+.|.+++.|+++++|+++|. .++.|. +++||++|.|++++.|.++ ++||++|.||.+|.|. ++.||+
T Consensus 118 ~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~---------v~Ig~~~~Ig~~~~i~~~~~Ig~ 188 (220)
T 4ea9_A 118 VAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGG---------VSVGERAFLGVGARVIPGVTIGA 188 (220)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS---------CEECTTCEECTTCEECTTCEECT
T ss_pred CEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC---------CEECCCCEECCCCEEcCCcEECC
Confidence 33333344444444443333 333343 3444444444444444443 5666666666666552 444444
Q ss_pred Cceeccc
Q 016989 366 NKTLNVS 372 (379)
Q Consensus 366 ~~~i~~~ 372 (379)
++.|+.+
T Consensus 189 ~~~igag 195 (220)
T 4ea9_A 189 DTIVGAG 195 (220)
T ss_dssp TCEECTT
T ss_pred CCEECCC
Confidence 4444443
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-09 Score=87.19 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=40.4
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeecc-----c-------ccccccceEECCCc
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAEG-----D-------FNAKLGITILGEAV 350 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~~-----~-------~~~~~~~sii~~~~ 350 (379)
.+++.+.+++.||+++.|+++|. |. +++||++|.|+++|.|.... + .++.+..++||++|
T Consensus 20 ~~~a~i~g~v~IG~~~~I~~~~~----i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 95 (173)
T 1v3w_A 20 DENAVVIGDVVLEEKTSVWPSAV----LRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYV 95 (173)
T ss_dssp CTTSEEEEEEEECTTCEECTTCE----EEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSE
T ss_pred CCCCEEeCCEEECCCCEECCCeE----EecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCC
Confidence 45566666666666666665543 32 25555555555555554210 0 01112225555555
Q ss_pred EECCCcEEe-ccEECCCceeccc
Q 016989 351 GVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 351 ~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
.||.+|.|. +++||+++.|+.+
T Consensus 96 ~Ig~~~~i~~~~~Ig~~~~Ig~~ 118 (173)
T 1v3w_A 96 IIGISSVILDGAKIGDHVIIGAG 118 (173)
T ss_dssp EECTTCEECTTCEECSSEEECTT
T ss_pred EECCCCEEeCCCEECCCCEECCC
Confidence 555555542 4444444444444
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-09 Score=90.48 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=11.1
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+.||.+++|.++++|. +|+|+++++|..+
T Consensus 172 ~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~ 201 (220)
T 4ea9_A 172 AFLGVGARVIPGVTIGADTIVGAGGVVVRD 201 (220)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEccc
Confidence 3333333333333332 3333444433333
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-08 Score=95.12 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeecccccccc-cceEECCCcEECCCcEEe--------------------ccEECCCc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKL-GITILGEAVGVEDEVVVT--------------------NSIVLPNK 367 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~-~~sii~~~~~i~~~~~i~--------------------~~ii~~~~ 367 (379)
+++.|. +++|+++|.||++|.|..+ +.+ .++.||++|.|+.++.|. +++||+++
T Consensus 154 ~~~~I~~~~~Ig~~v~IG~~~~I~~~----~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v 229 (372)
T 3pmo_A 154 AGVSIGAHCVIGARSVIGEGGWLAPR----VTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV 229 (372)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTT----CEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSC
T ss_pred CCCEECCCCEECCCCEECCCcccCCC----cEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCC
Confidence 333443 4444444444444444432 111 125566666666666553 46666666
Q ss_pred eecccc
Q 016989 368 TLNVSV 373 (379)
Q Consensus 368 ~i~~~~ 373 (379)
.||+++
T Consensus 230 ~IGa~~ 235 (372)
T 3pmo_A 230 EIGANT 235 (372)
T ss_dssp EECTTC
T ss_pred EECCCc
Confidence 666655
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.8e-09 Score=88.00 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=43.7
Q ss_pred CeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecccccccc-cceEECCCcEECCCcEEe-ccEE
Q 016989 289 NATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKL-GITILGEAVGVEDEVVVT-NSIV 363 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~-~~sii~~~~~i~~~~~i~-~~ii 363 (379)
++.|.+++.|+++++|+++|. .++.|. ++.||++|.|++++.|.++ +.+ +++.|+.++.|.++++|. +|+|
T Consensus 95 g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~----~~Ig~~~~Ig~~~~i~~~~~Ig~~~~I 170 (194)
T 3bfp_A 95 GILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGN----VKIGKNCFLGINSCVLPNLSLADDSIL 170 (194)
T ss_dssp CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT----CEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCC----cEECCCCEEcCCCEECCCCEECCCCEE
Confidence 344444444444444444444 344444 4555555555444444332 111 127777777777777774 7777
Q ss_pred CCCceeccccc
Q 016989 364 LPNKTLNVSVH 374 (379)
Q Consensus 364 ~~~~~i~~~~~ 374 (379)
+++++|.++++
T Consensus 171 gagsvv~~~v~ 181 (194)
T 3bfp_A 171 GGGATLVKNQD 181 (194)
T ss_dssp CTTCEECSCBC
T ss_pred CCCCEEccccC
Confidence 77777777665
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.7e-09 Score=87.83 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=22.6
Q ss_pred cceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 342 GITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 342 ~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.+++|+++|.||.+|.|. ++.|+++++|+.++
T Consensus 101 ~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~Igags 133 (192)
T 3mqg_A 101 RDTIVRQGATLGANCTVVCGATIGRYAFVGAGA 133 (192)
T ss_dssp CCEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CCcEECCCcEECCCCEECCCCEECCCCEEcCCC
Confidence 457888888888888884 66666666666553
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=93.79 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=33.6
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccccc-----ccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGDFN-----AKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~-----~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
++|.|. +++||++|.||++|.|..+.... .....++||++|.||.+|.| .+++||++++|+.++
T Consensus 163 ~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgags 233 (304)
T 3eg4_A 163 KGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGV 233 (304)
T ss_dssp TTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCC
Confidence 444554 45555555556555555542110 01112667777777766655 355555555555554
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=87.57 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=11.9
Q ss_pred CCCeEEecCeEECCCcEECCCC
Q 016989 287 TKNATIIGDVYVHPSAKIHPTA 308 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~ 308 (379)
++++.|.+++.|++++.|++++
T Consensus 7 ~p~a~I~~~~~Ig~~~~I~~~~ 28 (192)
T 3mqg_A 7 HPTAIVDEGARIGAHSRIWHWV 28 (192)
T ss_dssp CTTCEECTTCEECTTCEECTTC
T ss_pred CCCcEECCCCEECCCCEECCCC
Confidence 3555555555555555555444
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=87.20 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=26.1
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEee
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~ 333 (379)
.+++.+.+++.||+++.|+++|. |. ++.||++|.|+++|.|..
T Consensus 29 ~~~~~i~~~v~IG~~~~I~~~~~----i~~~~~~i~IG~~~~I~~~~~I~~ 75 (189)
T 3r1w_A 29 DRSSVIIGDVELGDDCSVWPLAV----IRGDMHHIRIGARTSVQDGSVLHI 75 (189)
T ss_dssp CTTCEEEEEEEECTTCEECTTCE----EEEEEEEEEECTTCEECTTCEEEC
T ss_pred CCCCEEeeeeEECCCCEECCCCE----EecCCCceEECCCCEECCCCEEec
Confidence 35566666666666666665543 32 336666666666666654
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=93.99 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccc--------cccccceEECCCcEECCCcEE
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDF--------NAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~--------~~~~~~sii~~~~~i~~~~~i 358 (379)
.+..|++++.||+++.|+++ .++.|+ +++||++|.|+.+|.|+++... ......++||++|.||.||.|
T Consensus 189 ~gv~I~p~a~IG~~v~I~hg--~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~I 266 (310)
T 3f1x_A 189 TGIDIHPGAQIGHHFTIDHG--TGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATI 266 (310)
T ss_dssp HSCEECTTCEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEE
T ss_pred CCcEECCCCEECCCcEECCC--CCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEE
Confidence 34566677777777777433 234565 6777777777777777765210 011122478888888888877
Q ss_pred e-ccEECCCceecccc
Q 016989 359 T-NSIVLPNKTLNVSV 373 (379)
Q Consensus 359 ~-~~ii~~~~~i~~~~ 373 (379)
. +++||++++||.++
T Consensus 267 l~gv~IGd~a~IGags 282 (310)
T 3f1x_A 267 LGRVTIGKGATVGGNI 282 (310)
T ss_dssp ESSCEECTTCEECSSC
T ss_pred CCCcEECCCCEECCCC
Confidence 4 66666666666654
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=91.90 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=43.6
Q ss_pred CCeEEecCeEECCCcEECC-----CCC--CCcEEe-ceEECCCCEECCCcEEeecccccc-----cccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHP-----TAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNA-----KLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~-----~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~-----~~~~sii~~~~~i~~ 354 (379)
+++.|.+++.|++++.|++ ++. ++|.|. +++|+++|.||++|+|+.+....+ ...+++||++|.||.
T Consensus 109 p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~ 188 (276)
T 3gos_A 109 PPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGA 188 (276)
T ss_dssp TTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECT
T ss_pred CCcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECC
Confidence 4444444444444444444 222 444555 555555555555555555422111 011366777777777
Q ss_pred CcEEe-ccEECCCceecccc
Q 016989 355 EVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 355 ~~~i~-~~ii~~~~~i~~~~ 373 (379)
+|.|. ++.||+++.|+.++
T Consensus 189 ~a~I~~gv~IG~~avIgags 208 (276)
T 3gos_A 189 RSEVVEGVIVEEGSVISMGV 208 (276)
T ss_dssp TCEECTTCEECTTCEECTTC
T ss_pred CCEECCCCEECCCCEECCCC
Confidence 77663 55555555555543
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-09 Score=93.67 Aligned_cols=86 Identities=8% Similarity=0.066 Sum_probs=55.2
Q ss_pred CCCeEEecCeEECCCcEECCCCC--------CCcEEe-----ceEECCCCEECCCcEEeecccccccccceEECCCcEEC
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK--------ENAVVT-----NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 353 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-----~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~ 353 (379)
.++++|.+++.||+++.|+++++ .+|+|+ .++||++|.|+++|.|... .....-.+++||++|.||
T Consensus 165 ~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~-~~~~~~~~V~IGDnv~IG 243 (332)
T 3fsy_A 165 ADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGT-LSGGGTHVISIGKRCLLG 243 (332)
T ss_dssp SCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSB-CC---CCBCEECTTCEEC
T ss_pred CCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCC-CCCCCccceEECCCCEEC
Confidence 35555555666666666666554 444443 2667777777777777542 111223348999999999
Q ss_pred CCcEEeccEECCCceeccccc
Q 016989 354 DEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 354 ~~~~i~~~ii~~~~~i~~~~~ 374 (379)
.||.| ++.||++|+||.++.
T Consensus 244 anAtI-gVtIGd~~iIGAGSV 263 (332)
T 3fsy_A 244 ANSGL-GISLGDDCVVEAGLY 263 (332)
T ss_dssp TTCEE-CSCBCSSCEECTTCE
T ss_pred CCCEE-eeEECCCCEECCCCE
Confidence 99998 777777777777654
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=91.10 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=41.8
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEec--------cEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVTN--------SIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~~--------~ii~~~~~i~~~~~ 374 (379)
+++.|. ++.||++|.|+++|.|....- +.++..+++||++|.|+++|.|.. ++||+++.|+.++.
T Consensus 46 ~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~ 122 (262)
T 2qia_A 46 SHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAH 122 (262)
T ss_dssp SSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCE
T ss_pred CCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeE
Confidence 444555 666666666666666653100 112233588999999999998853 77888777777653
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-08 Score=88.83 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=20.2
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-----ceEECCCCEECCCcEEe
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-----NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-----~s~ig~~~~ig~~~~i~ 332 (379)
+++.|.+++.||+++.|+++|+ |. +.+||++|.|+++|.|.
T Consensus 70 ~~a~I~g~v~IG~~~~I~~~~~----I~~~~~~~i~IG~~~~Ig~~~~I~ 115 (247)
T 1qre_A 70 PQASVIGEVTIGANVMVSPMAS----IRSDEGMPIFVGDRSNVQDGVVLH 115 (247)
T ss_dssp TTCEEEESEEECTTCEECTTCE----EEESSSCCEEECTTCEECTTCEEE
T ss_pred CCCEEeCCcEECCCCEECCCcE----EecCCCCCEEECCCCEECCCeEEE
Confidence 4445545555555555555442 22 12455555555555554
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=90.79 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=50.0
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
.+..|++++.||+++.|++++ +++|+ +++||++|.|+.++.|++.... .....++||++|.||.||.|. +++||+
T Consensus 163 ~gi~I~p~a~IG~~v~I~hg~--gvvIG~~~~IGd~v~I~~gvtIg~~~~~-~~~r~~~IGd~v~IGaga~Il~gv~IG~ 239 (287)
T 3mc4_A 163 FQTDIHPAARLGSGLFLDHAT--GLVVGETAVVEDNVSILHGVTLGGTGKS-SGDRHPKIRQGVLIGAGAKILGNIQVGQ 239 (287)
T ss_dssp TCCEECTTCEECSSCEEESCT--TCEECTTCEECSSCEEETTCEEEC------CCCSCEECTTCEECTTCEEESSCEECT
T ss_pred cCeEECCCCEECCCeEEccCC--CeEECCCeEECCCCEEcCCCEEcCCccc-CCCcCCEECCCCEECCCCEECCCcEECC
Confidence 345666777777777776542 34565 6777777777777777663211 111236777777777777663 566666
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
+++||.++
T Consensus 240 ~a~IGags 247 (287)
T 3mc4_A 240 CSKIAAGS 247 (287)
T ss_dssp TCEECTTC
T ss_pred CCEECCCC
Confidence 66666554
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=91.54 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccc-cceEECCCcEECCCcEEec--------cEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKL-GITILGEAVGVEDEVVVTN--------SIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~-~~sii~~~~~i~~~~~i~~--------~ii~~~~~i~~~~~ 374 (379)
+++.|. ++.||++|.|++++.|+..-- +.++. .+++||++|.|+++|.|.. ++||+++.|+.++.
T Consensus 45 ~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~ 122 (266)
T 3r0s_A 45 QGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCH 122 (266)
T ss_dssp TTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCE
T ss_pred CCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcce
Confidence 444555 667777777777777741000 01111 3499999999999999963 67777777776653
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.78 E-value=9.4e-09 Score=96.53 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=6.1
Q ss_pred eEECCCcEECCCcEE
Q 016989 344 TILGEAVGVEDEVVV 358 (379)
Q Consensus 344 sii~~~~~i~~~~~i 358 (379)
++||++|.|+.++.|
T Consensus 169 ~~IG~~~~I~~g~~I 183 (357)
T 4e79_A 169 SKLRDRVRIHSSTVI 183 (357)
T ss_dssp CEECSSCEECTTCEE
T ss_pred cEEEeEeeccCCeEE
Confidence 444444444444433
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-08 Score=89.20 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=54.9
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
.+..|++++.||+++.|++++ ++.|+ +++||++|.|++++.|++.... ....+++||++|.||.||.|. +++||+
T Consensus 136 ~g~~I~p~a~IG~g~~I~~~~--~vvIG~~~~IG~~v~I~~gvtig~~~~~-~~~~~~~IGd~v~IGaga~Il~gv~IG~ 212 (267)
T 1ssq_A 136 FDVDIHPAAKIGHGIMFDHAT--GIVVGETSVIENDVSILQGVTLGGTGKE-SGDRHPKVREGVMIGAGAKILGNIEVGK 212 (267)
T ss_dssp HSCEECTTCEECSSCEESSCT--TCEECTTCEECTTCEECTTCEEECCSSS-CSSCSCEECTTCEECTTCEEESSCEECT
T ss_pred cceEeCCCCEECCCEEECCCC--ceEECCeeEECCCCEEcCCcEECCCccc-CCCCCeEECCCeEEcCCCEEeCCcEECC
Confidence 345667777777777777652 45676 7888888888888888764211 112336788888888777773 556666
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
+++||.++
T Consensus 213 ~a~IGags 220 (267)
T 1ssq_A 213 YAKIGANS 220 (267)
T ss_dssp TCEECTTC
T ss_pred CCEECCCC
Confidence 66665554
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-08 Score=89.39 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=8.2
Q ss_pred ceEECCCCEECCCcEE
Q 016989 316 NAIVGWKSSIGRWSRV 331 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i 331 (379)
++.||++|.|+++|.|
T Consensus 48 ~~~IG~~~~I~~~a~I 63 (259)
T 3hsq_A 48 GSEIGKFNRFHQGAVI 63 (259)
T ss_dssp TEEECSSCEECTTCEE
T ss_pred CcEECCCcEECCCCEE
Confidence 3555555555555555
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.1e-08 Score=89.24 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=56.1
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
.+..|++++.||+++.|+++ .++.|+ +++||++|.|+.++.|++..... ...+++||++|.||.||.|. +++||+
T Consensus 156 ~g~~I~p~a~IG~gv~I~~g--~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~-~~~~~~IGd~v~IGaga~Ilggv~IG~ 232 (289)
T 1t3d_A 156 FQVDIHPAAKIGRGIMLDHA--TGIVVGETAVIENDVSILQSVTLGGTGKSG-GDRHPKIREGVMIGAGAKILGNIEVGR 232 (289)
T ss_dssp HSCEECTTCEECSSCEECSC--TTCEECTTCEECSSCEECTTCEEECCSSSC-SSCSCEECTTCEECTTCEEESSCEECT
T ss_pred cceEEcCCCEEcCCEEECCC--CceEECCCcEECCCCEEcCCcEECCCcccc-CCCCeEECCCeEECCCCEEecCcEECC
Confidence 34567777777777777765 246777 78888888888888887642211 12336788888888887773 556666
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
+++||.++
T Consensus 233 ~a~IGags 240 (289)
T 1t3d_A 233 GAKIGAGS 240 (289)
T ss_dssp TCEECTTC
T ss_pred CCEECCCC
Confidence 66666553
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=91.28 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=42.5
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe--------ccEECCCceecccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT--------NSIVLPNKTLNVSV 373 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~--------~~ii~~~~~i~~~~ 373 (379)
+++.|. ++.||++|.|+++|.|+...- +.++..+++||+++.|+++|.|. +++||+++.|+.++
T Consensus 42 ~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~ 117 (270)
T 1j2z_A 42 NNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYV 117 (270)
T ss_dssp TTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTC
T ss_pred CCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCccEEECCCcEECccc
Confidence 445565 777777777777777752100 12333458889999999999885 36777777666554
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=85.83 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=49.3
Q ss_pred CCeEEecCe---EECCCcEECCCCCCCcEE------------eceEECCCCEECCCcEEeecccccccccceEECCCcEE
Q 016989 288 KNATIIGDV---YVHPSAKIHPTAKENAVV------------TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGV 352 (379)
Q Consensus 288 ~~~~i~~~~---~i~~~~~i~~~~~~~~~i------------~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i 352 (379)
+++.|.+++ .||+++.|+++| .| .+++||++|.||++|.|.+ ++||++|.|
T Consensus 44 ~~~~i~~~~~~i~IG~~~~I~~~~----~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~~I 109 (187)
T 3r3r_A 44 PLVVIRGDVNYVAIGARTNIQDGS----VLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHG----------CTIGNRVLV 109 (187)
T ss_dssp TTCEEEEEEEEEEECTTCEECTTC----EEECBCCBTTBC-CBCEEECSSCEECTTCEEES----------CEECSSEEE
T ss_pred CCcEEEcCCccEEECCCCEECCCC----EEecCCccccCCCCCCeEECCCCEECCCCEEeC----------cEECCCCEE
Confidence 444444432 666666666544 45 5788888888888888876 778888888
Q ss_pred CCCcEE-eccEECCCceecccc
Q 016989 353 EDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 353 ~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
|.+|.| .++.|++++.|+.++
T Consensus 110 g~~~~I~~~~~Ig~~~~Ig~~s 131 (187)
T 3r3r_A 110 GMGSIVLDGAIIEDDVMIGAGS 131 (187)
T ss_dssp CTTCEECTTCEECSSEEECTTC
T ss_pred CCCCEECCCCEECCCCEECCCC
Confidence 877777 366777776666654
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=84.87 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=29.8
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeec
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~ 334 (379)
.+++.|.+++.||+++.|+++|+ |. +.+||++|.|+++|.|...
T Consensus 22 ~~~a~I~g~V~IG~~~~I~~~~~----I~~~~g~i~IG~~~~I~~~~~I~~~ 69 (194)
T 3tv0_A 22 CVESEIRGDVTIGPRTVIHPKAR----IIAEAGPIVIGEGNLIEEQALIINA 69 (194)
T ss_dssp CTTSEEESSEEECTTCEECTTCE----EEESSSCEEECTTCEECTTCEEEEC
T ss_pred cCCCEEeCCCEECCCCEECCCCE----EccCCCCeEECCCccccCCcccccc
Confidence 45666666777777777776654 42 4678888888888887543
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-08 Score=84.77 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=42.8
Q ss_pred EECCCcEECCCCCCCcEEe------ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCcee
Q 016989 297 YVHPSAKIHPTAKENAVVT------NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTL 369 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~------~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i 369 (379)
.||+++.|+++| .|. +++||++|.||+++.|.+ ++||++|.||.+|.|. ++.|++++.|
T Consensus 74 ~IG~~~~I~~~~----~I~~~~~~g~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~~Ig~~~~I~~~~~Ig~~~~I 139 (191)
T 3ixc_A 74 EVGEGTNIQDNT----VVHTDSMHGDTVIGKFVTIGHSCILHA----------CTLGNNAFVGMGSIVMDRAVMEEGSML 139 (191)
T ss_dssp EECTTCEECTTC----EECC----CCEEECTTCEECTTCEECS----------CEECTTCEECTTCEECTTCEECTTCEE
T ss_pred EECCCCEECCCC----EEeecCCcCCeEECCCCEECCCCEEEC----------CEECCCCEECCCCEEeCCeEECCCCEE
Confidence 455555555443 454 788888888888888876 7777777777777774 4666666666
Q ss_pred cccc
Q 016989 370 NVSV 373 (379)
Q Consensus 370 ~~~~ 373 (379)
+.++
T Consensus 140 g~gs 143 (191)
T 3ixc_A 140 AAGS 143 (191)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-08 Score=92.02 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=43.0
Q ss_pred CCeEEecCeEECCCcEECCC-----CC--CCcEEe-ceEECCCCEECCCcEEeecccccc-----cccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPT-----AK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNA-----KLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~-----~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~-----~~~~sii~~~~~i~~ 354 (379)
+++.|.+++.||+++.|+++ +. +++.|. +++||++|.||++|+|+.+..... ...+++||++|.||.
T Consensus 150 p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~ 229 (316)
T 3tk8_A 150 PPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGA 229 (316)
T ss_dssp TTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECT
T ss_pred CCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECC
Confidence 44555555555555544442 22 455555 466666666666666665422100 111256666666665
Q ss_pred CcEE-eccEECCCceecccc
Q 016989 355 EVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 355 ~~~i-~~~ii~~~~~i~~~~ 373 (379)
+|.| .++.||++++|+.++
T Consensus 230 ~a~I~~gv~IG~g~vIgags 249 (316)
T 3tk8_A 230 RSEVVEGVIVEENSVISMGV 249 (316)
T ss_dssp TCEECTTCEECTTCEECTTC
T ss_pred CCEEcCCCEECCCCEEcCCC
Confidence 5555 244444444444443
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.3e-08 Score=90.39 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=44.2
Q ss_pred CCCCeEEecCeEECCCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEeecccccccc-cceEECCCcEECCC
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKL-GITILGEAVGVEDE 355 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~-~~sii~~~~~i~~~ 355 (379)
.++++.|.+++.|++++.|+++|+ ++|.|. +++||.+|.||++|.|..+ +.+ .++.||++|.|+.+
T Consensus 100 i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~----~~I~~~~~IG~~~~I~~g 175 (341)
T 3eh0_A 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWAN----VTIYHEIQIGQNCLIQSG 175 (341)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS----CEECTTCEECSSCEECTT
T ss_pred cCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCC----cEECCCCEECCccEEcCC
Confidence 345555555555555555554443 333332 3333333333333333332 222 23667777777777
Q ss_pred cEE--------------------eccEECCCceeccccc
Q 016989 356 VVV--------------------TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 356 ~~i--------------------~~~ii~~~~~i~~~~~ 374 (379)
+.| .+++||+++.|+.++.
T Consensus 176 ~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~ 214 (341)
T 3eh0_A 176 TVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTT 214 (341)
T ss_dssp CEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCE
T ss_pred cEECCccccccccCCccccccccCcEEECCCcEECCccE
Confidence 766 2467777777777765
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-08 Score=91.89 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=15.2
Q ss_pred CCCCeEEecCeEECCCcEECCCCC
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAK 309 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~ 309 (379)
.++++.|.+++.|++++.|+++|+
T Consensus 105 i~p~a~I~~~a~ig~~~~I~~~~~ 128 (357)
T 4e79_A 105 IESTARIHPSAVISETAYIGHYVV 128 (357)
T ss_dssp ECTTCEECTTCEECTTCEECTTCE
T ss_pred eCCCCEECCCCEECCCCEECCCCE
Confidence 456666666666666666665554
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=91.37 Aligned_cols=65 Identities=12% Similarity=0.296 Sum_probs=41.2
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEec--------cEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVTN--------SIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~~--------~ii~~~~~i~~~~~ 374 (379)
+++.|. ++.||++|.|+++|.|+...- +.++..+++||++|.|+++|.|.. ++||+++.|+.++.
T Consensus 63 ~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~ 139 (283)
T 4eqy_A 63 SHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVH 139 (283)
T ss_dssp TTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCE
T ss_pred CCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEccceecCCCceEECCCcEECceeE
Confidence 344454 566666666666666642100 122334589999999999999974 77777777776653
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-08 Score=83.58 Aligned_cols=76 Identities=11% Similarity=0.009 Sum_probs=42.2
Q ss_pred ecCeEECCCcEECCCCCCCcEEe---ceEECCCCEECCCcEEeecccc--------ccc-ccceEECCCcEECCCcEEe-
Q 016989 293 IGDVYVHPSAKIHPTAKENAVVT---NAIVGWKSSIGRWSRVQAEGDF--------NAK-LGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~~~~~i~---~s~ig~~~~ig~~~~i~~~~~~--------~~~-~~~sii~~~~~i~~~~~i~- 359 (379)
+.++.||+++.|+++| .|. ...||++|.||++|.|...... ... -.+++||++|.||.+|.|.
T Consensus 76 g~~v~IG~~~~I~~~~----~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~ 151 (190)
T 3hjj_A 76 GYNIHVGKSFFANFNC----VILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINP 151 (190)
T ss_dssp STTEEECTTCEECTTC----EEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECT
T ss_pred CCceEECCceeeCCCe----EEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECC
Confidence 4456666666666554 443 5678888888888888543210 000 1125666666666666653
Q ss_pred ccEECCCceeccc
Q 016989 360 NSIVLPNKTLNVS 372 (379)
Q Consensus 360 ~~ii~~~~~i~~~ 372 (379)
++.||++++|+.+
T Consensus 152 gv~IG~~~vIgag 164 (190)
T 3hjj_A 152 GVSIGDNAVIASG 164 (190)
T ss_dssp TCEECTTCEECTT
T ss_pred CCEECCCCEECCC
Confidence 4444444444443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-08 Score=89.93 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=40.5
Q ss_pred CcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe--------ccEECCCceeccccc
Q 016989 311 NAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT--------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 311 ~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~--------~~ii~~~~~i~~~~~ 374 (379)
++.|. ++.||++|.|++++.|+...- +.++..+++||++|.|+++|.|. +++||+++.|+.++.
T Consensus 49 ~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~ 124 (265)
T 4e6u_A 49 HVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTH 124 (265)
T ss_dssp SCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCE
T ss_pred CcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeE
Confidence 34444 566666666666666632100 12233459999999999999996 477777777766653
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-08 Score=97.15 Aligned_cols=83 Identities=16% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeeccc-------ccccccceEECCCcEECCCcEEe
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGD-------FNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~-------~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
.+++.+.+++.||+++.|+++| .|++++||++|.|+++|.|.+..+ .++.+..++||++|.||.+|.|.
T Consensus 283 ~p~a~i~g~v~IG~~~~I~~~a----~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~ 358 (496)
T 3c8v_A 283 SGYAVIKGDTVIGENVLVSQRA----YLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQ 358 (496)
T ss_dssp CTTSEEESSCEECTTCEECTTC----EEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEE
T ss_pred CCCcEEeCCeEECCCCEECCCc----EEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEe
Confidence 3555555666666766666554 456666666666666666654111 12222336666666666666665
Q ss_pred cc-----EECCCceecccc
Q 016989 360 NS-----IVLPNKTLNVSV 373 (379)
Q Consensus 360 ~~-----ii~~~~~i~~~~ 373 (379)
++ +||+++.||.++
T Consensus 359 ~~~~~~v~IG~~a~IGags 377 (496)
T 3c8v_A 359 GSESSPLKIGDGCVVMPHT 377 (496)
T ss_dssp CCSSSCEEECTTCEECTTC
T ss_pred CCCCcceEECCCCEECCCC
Confidence 33 666666666554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-08 Score=83.57 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=8.5
Q ss_pred ceEECCCCEECCCcEEe
Q 016989 316 NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~ 332 (379)
+++||+++.|+.++.+.
T Consensus 85 ~~~Ig~~~~i~~~~~i~ 101 (194)
T 3tv0_A 85 PMIIGTNNVFEVGCYSQ 101 (194)
T ss_dssp CEEECSSCEECTTCEEC
T ss_pred ceEECCcceEecceeEe
Confidence 34555555555554443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=85.69 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=55.9
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe-----ceEECCCCEECCCcEEeeccc-----ccccccceEECCCcEECCCc
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT-----NAIVGWKSSIGRWSRVQAEGD-----FNAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-----~s~ig~~~~ig~~~~i~~~~~-----~~~~~~~sii~~~~~i~~~~ 356 (379)
.+++.+.+++.||+++.|+++| .|. +++||++|.|+++|.|....- ..+....++||++|.|+.+|
T Consensus 49 ~~~a~i~~~v~IG~~~~I~~~~----~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~ 124 (213)
T 3kwd_A 49 HSFSNLIGDVRIKDYVHIAPGT----SIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMA 124 (213)
T ss_dssp CTTSEEEESEEECTTCEECTTC----EEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTC
T ss_pred CCCCEEeCceEECCCCEEcCCc----EEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCc
Confidence 4667777777777777777655 442 468888888888888864100 00011127788888888888
Q ss_pred EEec-cEECCCceeccccc
Q 016989 357 VVTN-SIVLPNKTLNVSVH 374 (379)
Q Consensus 357 ~i~~-~ii~~~~~i~~~~~ 374 (379)
.|.+ ++||+++.||.++.
T Consensus 125 ~I~~~v~Ig~~v~IG~~a~ 143 (213)
T 3kwd_A 125 LIHGPAYIGDGCFIGFRST 143 (213)
T ss_dssp EEEEEEEECTTCEECTTCE
T ss_pred EEcCCCEECCCCEECCCCE
Confidence 7764 77787777777664
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.4e-08 Score=88.23 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=36.2
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
.++.||++|.|++++.|..+.... -..++||++|.|+.++.| ++|.||+++.|+.++
T Consensus 82 ~~v~IG~~~~Ig~~~~I~~~~~~~--~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~ 139 (266)
T 3r0s_A 82 SGVVIGKNATIREFATINSGTAKG--DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNA 139 (266)
T ss_dssp CEEEECTTCEECTTCEEECCCTTT--TSEEEECTTCEECTTCEECTTCEECSSCEECTTC
T ss_pred ceEEECCCCEECCceEecCCcccC--CccEEECCCceeCCcceEccccccCCCeEECCCc
Confidence 477888888888888887542110 112677777777777766 466666666655544
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=90.69 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=19.6
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEe
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~ 332 (379)
++++.|.+++.|++++.|+++|+ |+ ++.||++|.|++++.|.
T Consensus 11 ~p~A~I~~~a~Ig~~v~Ig~~~~----I~~~v~IG~~~~I~~~~~I~ 53 (305)
T 3t57_A 11 HPSAVVHPNAVIGKGVSVGPYCT----IGSSVKLGNGCKLYPSSHVF 53 (305)
T ss_dssp CTTSEECTTSEECTTCEECTTCE----ECTTEEECTTCEECTTCEEC
T ss_pred CCCCEECCCCEECCCCEECCCCE----ECCCCEECCCCEECCCcEEC
Confidence 45555555555555555554432 33 34444444444444443
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=90.73 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=32.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+++||++|.|+++|.|..+..... ..++||++|.|+.++.| ++|+||+++.|+.++
T Consensus 100 ~v~IG~~~~Ig~~~~I~~g~~~~~--~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~ 156 (283)
T 4eqy_A 100 RLVIGDRNTIREFTTIHTGTVQDA--GVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNA 156 (283)
T ss_dssp EEEECSSCEECTTEEEECCCTTTT--SEEEECSSCEECTTCEECTTCEECSSCEECTTC
T ss_pred eEEECCCcccCcceeEccceecCC--CceEECCCcEECceeEEcCCcEECCCcEECCCc
Confidence 556677777777777765322100 12666666666666666 456666555555544
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.9e-08 Score=87.69 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=6.7
Q ss_pred eEECCCCEECCCcEE
Q 016989 317 AIVGWKSSIGRWSRV 331 (379)
Q Consensus 317 s~ig~~~~ig~~~~i 331 (379)
++||++|.|++++.|
T Consensus 71 ~~Ig~~~~I~~~~~i 85 (273)
T 3fs8_A 71 LIIGENALIRTENVI 85 (273)
T ss_dssp EEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 444444444444444
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-08 Score=82.62 Aligned_cols=64 Identities=3% Similarity=0.050 Sum_probs=41.3
Q ss_pred eEECCCcEECCCCCCCcEEe-----ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCcee
Q 016989 296 VYVHPSAKIHPTAKENAVVT-----NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTL 369 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~-----~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i 369 (379)
+.||+++.|+++| .|. +++||++|.|++++.|.+ ++||++|.||.+|.|. ++.|++++.|
T Consensus 52 v~IG~~~~I~~~~----~I~~~~~~~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~I 117 (173)
T 1xhd_A 52 TIIGDRVNVQDQC----TLHQSPQYPLILEDDVTVGHQVILHS----------CHIKKDALIGMGSIILDGAEIGEGAFI 117 (173)
T ss_dssp EEECTTCEECTTC----EEECCTTCCEEECTTCEECTTCEEES----------CEECTTCEECTTCEECTTCEECTTCEE
T ss_pred EEECCCCEECCCC----EEEeCCCCCeEECCCCEECCCCEEeC----------CEECCCCEEcCCCEEcCCCEECCCCEE
Confidence 4556666665443 454 677777777777777766 6777777777776664 5666666666
Q ss_pred cccc
Q 016989 370 NVSV 373 (379)
Q Consensus 370 ~~~~ 373 (379)
+.++
T Consensus 118 g~~s 121 (173)
T 1xhd_A 118 GAGS 121 (173)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6554
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-08 Score=89.18 Aligned_cols=83 Identities=17% Similarity=0.075 Sum_probs=48.9
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeeccc-------ccccccceEECCCcEECCCcEEe-
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGD-------FNAKLGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~-------~~~~~~~sii~~~~~i~~~~~i~- 359 (379)
+..|++++.||+++.|++++ ++.|+ +++||++|.|+.++.|++... ..+...+++||++|.||.||.|.
T Consensus 163 gv~I~p~a~IG~~v~I~~g~--gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilg 240 (313)
T 3q1x_A 163 SIDIHPGASIKGHFFIDHGV--GVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLG 240 (313)
T ss_dssp CCEECTTCEECSSCEESSCT--TCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEES
T ss_pred CeEECCCCEECCCEEECCCC--ceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECC
Confidence 44566666666666664442 34555 566666666666666655321 11112235888888888888774
Q ss_pred ccEECCCceecccc
Q 016989 360 NSIVLPNKTLNVSV 373 (379)
Q Consensus 360 ~~ii~~~~~i~~~~ 373 (379)
+++||+++.||.++
T Consensus 241 gv~IG~~a~IGags 254 (313)
T 3q1x_A 241 NIIVGSHVRIGANC 254 (313)
T ss_dssp SCEECSSEEECTTC
T ss_pred CcEECCCCEECCCC
Confidence 66777777776654
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-08 Score=85.06 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=44.5
Q ss_pred CCCeEEec--CeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 287 TKNATIIG--DVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 287 ~~~~~i~~--~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
.+++.|.+ ++.||+++.|+++| .|. ++.||++|.|+++|.|... -.+++||++|.|+++|.|
T Consensus 42 ~~~~~i~~~~~v~IG~~~~I~~~~----~I~~~v~IG~~~~I~~~~~I~~~------~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 42 SKKASIYNPGVISIGNNVRIDDFC----ILSGKVTIGSYSHIAAYTALYGG------EVGIEMYDFANISSRTIV 106 (205)
T ss_dssp BTTSEEESGGGEEECSSEEECTTC----EEEEEEEECSSEEECTTCEEEEE------EEEEEECTTCEECTTCEE
T ss_pred CCCeEEccCCeeEECCCCEECCCC----EEccceEECCCCEECCCeEEEcC------CccEEECCCCEECCCcEE
Confidence 35566655 67777777777655 565 8999999999999999432 011788888888877777
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.6e-08 Score=89.70 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=11.8
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
+.||.+|+|++++.|. +|+|+++++|+.
T Consensus 225 v~IG~~a~I~~gv~IG~g~vIgagsvV~~ 253 (316)
T 3tk8_A 225 CFIGARSEVVEGVIVEENSVISMGVYLGQ 253 (316)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 4444444444444442 444444444443
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-08 Score=90.75 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=36.5
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
++||++|.|+++|.|.++ .....-.+++||++|.||.||.| ++.||++++||.++.
T Consensus 231 v~IGdnv~IgpGa~IgG~-~~~~~~~~V~IGdnv~IGAnAtI-GVtIGd~~iIGAGSV 286 (347)
T 3r5d_A 231 VFVGKGSDLGGGCSTMGT-LSGGGNIVISVGEGCLIGANAGI-GIPLGDRNIVEAGLY 286 (347)
T ss_dssp CEECTTEEECTTCEECC-------CCCCEECTTCEECTTCEE-CSCBCTTCEECTTCE
T ss_pred EEECCCCEECCCCEEccc-cCCCCccceEECCCCEECCCCEE-eeEECCCCEECCCCE
Confidence 667777777777777542 11112233889999999999988 777777777776653
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-08 Score=86.96 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=34.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+++||++|.|+++|.|..+.... -..++||++|.|+.++.| ++|.|++++.|+.++
T Consensus 83 ~~~IG~~~~Ig~~~~I~~~~~~~--~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~ 139 (262)
T 2qia_A 83 RVEIGDRNRIRESVTIHRGTVQG--GGLTKVGSDNLLMINAHIAHDCTVGNRCILANNA 139 (262)
T ss_dssp EEEECSSCEECTTCEEECCCTTT--TSEEEECSSCEECTTCEECTTCEECSSCEECTTC
T ss_pred ceEECCCceeCCCCEEcCCccCC--CCcCEECCCcEEeeeeEECCCCEECCCeEECCcc
Confidence 56677777777777776531100 012777777777777776 466666665555543
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-08 Score=83.20 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=40.0
Q ss_pred ecCeEECCCcEECCCCCCCcEEe---ceEECCCCEECCCcEEeecccc--------cc-cccceEECCCcEECCCcEE--
Q 016989 293 IGDVYVHPSAKIHPTAKENAVVT---NAIVGWKSSIGRWSRVQAEGDF--------NA-KLGITILGEAVGVEDEVVV-- 358 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~~~~~i~---~s~ig~~~~ig~~~~i~~~~~~--------~~-~~~~sii~~~~~i~~~~~i-- 358 (379)
+.++.||+++.|+++| .|. ..+||++|.||++|.|.....- .. ....++||++|.||.+|.|
T Consensus 72 g~~~~IG~~~~I~~~~----~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~ 147 (199)
T 3ftt_A 72 GWNVKLGKNVYVNTNC----YFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLP 147 (199)
T ss_dssp STTEEECSSEEECTTE----EEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECT
T ss_pred cCCcEECCCeEECCCe----EEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECC
Confidence 3445555555555443 442 3578888888888877432100 00 0111345555555555544
Q ss_pred ----e-ccEECCCceeccccc
Q 016989 359 ----T-NSIVLPNKTLNVSVH 374 (379)
Q Consensus 359 ----~-~~ii~~~~~i~~~~~ 374 (379)
. +|+|+++++|..+++
T Consensus 148 gv~IG~~~vIgagsvV~~dvp 168 (199)
T 3ftt_A 148 GVTIGEGSVIGAGSVVTKDIP 168 (199)
T ss_dssp TCEECTTCEECTTCEECSCBC
T ss_pred CCEECCCCEECCCCEECcccC
Confidence 2 556666666665555
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.4e-08 Score=88.19 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=34.8
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
.+++||++|.|+++|.|..+.... -..++||++|.|+.++.| ++|+|++++.|+.++
T Consensus 84 ~~~~IG~~~~Ig~~~~I~~g~~~~--~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~ 141 (265)
T 4e6u_A 84 TWLEIGNNNLIREHCSLHRGTVQD--NALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNV 141 (265)
T ss_dssp CEEEECSSCEECTTCEEECCCTTT--TSEEEECSSCEECTTCEECTTCEECSSCEECTTC
T ss_pred CeEEECCCeEECCceEECcccccC--CCceEEccCcEEeeeeEEcccEEECCCcEEcCCc
Confidence 367777777778887776432100 012777777777777766 466666665555544
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.7e-08 Score=86.27 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=23.0
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEee
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~ 333 (379)
+++.|++++.|++++.|+++| .|. ++.||++|.|+++|.|++
T Consensus 13 ~~a~I~~~~~Ig~~~~Ig~~~----~I~~~v~Ig~~~~I~~~~~I~~ 55 (273)
T 3fs8_A 13 EGVIIGENVTIEDNVYIDYGC----IIRDNVHIKKGSFIGARSILGE 55 (273)
T ss_dssp TTCEECSSEEECTTCEECTTC----EECSSEEECTTCEECTTCEEEE
T ss_pred CCcEECCCCEECCCcEECCCC----EECCCCEECCCcEECCCcEeCC
Confidence 445555555555555555443 444 556666666666655554
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-08 Score=82.11 Aligned_cols=51 Identities=27% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCcee
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTL 369 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i 369 (379)
.++.|.+++||++|.||+++.|.++ +.||++|.|+.++.|. ++.|++++.+
T Consensus 82 ~~~~i~~~~Ig~~~~Ig~~~~i~~~---------~~Ig~~~~Ig~~s~V~~~~~i~~~~~v 133 (173)
T 1v3w_A 82 HNAMVHGAKVGNYVIIGISSVILDG---------AKIGDHVIIGAGAVVPPNKEIPDYSLV 133 (173)
T ss_dssp TTCEEESCEECSSEEECTTCEECTT---------CEECSSEEECTTCEECTTCEECTTEEE
T ss_pred CCCEECCCEECCCCEECCCCEEeCC---------CEECCCCEECCCCEECCCcEeCCCcEE
Confidence 3445666667777777777776665 7777777777777775 4677777776
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.5e-08 Score=82.38 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=40.1
Q ss_pred EECCCcEECCCCCCCcEEec------------eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEE
Q 016989 297 YVHPSAKIHPTAKENAVVTN------------AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIV 363 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~~------------s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii 363 (379)
.||+++.|+++| .|.. ++||++|.||++|.|.+ ++||++|.||.+|.| .++.|
T Consensus 60 ~IG~~~~I~~~~----~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~~Ig~~~~i~~~v~I 125 (189)
T 3r1w_A 60 RIGARTSVQDGS----VLHITHASDYNPGGYPLIIGDDVTIGHQAMLHG----------CTIGNRVLIGMKSMIMDGAIV 125 (189)
T ss_dssp EECTTCEECTTC----EEECBCCSSSSTTCBCEEECSSEEECTTCEEES----------CEECSSEEECTTCEECTTCEE
T ss_pred EECCCCEECCCC----EEecCCcccCCCCCCCeEECCCCEECCCCEEeC----------cEECCCcEECCCCEEcCCCEE
Confidence 556666666544 4443 48888888888887766 677777777777766 35555
Q ss_pred CCCceecccc
Q 016989 364 LPNKTLNVSV 373 (379)
Q Consensus 364 ~~~~~i~~~~ 373 (379)
++++.|+.++
T Consensus 126 g~~~~Ig~~s 135 (189)
T 3r1w_A 126 EDEVIVAAGA 135 (189)
T ss_dssp CSSCEECTTC
T ss_pred CCCCEEccCC
Confidence 5555555543
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-08 Score=84.00 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=44.8
Q ss_pred eEEecCeEECCCcEECCCCCCCcEEe---ceEECCCCEECCCcEEeeccc--------ccc-cccceEECCCcEECCCcE
Q 016989 290 ATIIGDVYVHPSAKIHPTAKENAVVT---NAIVGWKSSIGRWSRVQAEGD--------FNA-KLGITILGEAVGVEDEVV 357 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~~~~~i~---~s~ig~~~~ig~~~~i~~~~~--------~~~-~~~~sii~~~~~i~~~~~ 357 (379)
+.+++++.||+++.|+++| .|. ..+||++|.||++|.|..+.- ... ...+++||++|.||.+|.
T Consensus 71 ~~ig~~v~IG~~~~I~~~~----~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~ 146 (195)
T 3nz2_A 71 CEFGKTIRIGDHTFINMNV----VMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVV 146 (195)
T ss_dssp ESCSTTEEECTTCEECTTE----EEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCE
T ss_pred EEeCCCeEECCCcEECcCC----EEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCE
Confidence 3344455666666666444 452 348888888888888765321 000 112256666666666665
Q ss_pred Ee-------ccEECCCceeccccc
Q 016989 358 VT-------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 358 i~-------~~ii~~~~~i~~~~~ 374 (379)
|. +|+|+++++|..+++
T Consensus 147 I~~gv~IG~~~vIgagsvV~~dvp 170 (195)
T 3nz2_A 147 INQGVTIGARSVVAANSVVNQDVP 170 (195)
T ss_dssp ECTTCEECTTCEECTTCEECSCBC
T ss_pred ECCCCEECCCCEECCCCEEccccC
Confidence 52 455555555555554
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-08 Score=92.67 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=22.8
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
.++.|.+++||++|.|++++.|.+ ++||++|.||.+|.|.
T Consensus 291 ~~~~i~~~~i~~~~~i~~~~~i~~----------~~Ig~~~~Ig~~~~i~ 330 (401)
T 2ggo_A 291 ASVEVKESVIMEGSKIPHLSYVGD----------SVIAEDVNFGAGTLIA 330 (401)
T ss_dssp ETCEEESEEECTTCEEEESCEEES----------CEECTTCEECTTCEEC
T ss_pred CCCEEecCEEcCCcEECCCceEcc----------eEECCCcEECCCcEEc
Confidence 334455555566555555555544 6666666666666654
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-08 Score=85.73 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=37.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
+++||++|.||++|.|.++ ++||++|.||.+|.|.++.|++++.|+.++
T Consensus 140 ~v~IG~~v~Ig~~~~I~~~---------~~Ig~~v~IG~~a~I~~v~Ig~~~~Igags 188 (247)
T 1qre_A 140 AVYIGNNVSLAHQSQVHGP---------AAVGDDTFIGMQAFVFKSKVGNNCVLEPRS 188 (247)
T ss_dssp SEEECTTCEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECTTC
T ss_pred ceEECCCCEECCCCEEcCC---------cEECCCCEECCCCEEeceEECCCCEECCCC
Confidence 4899999999999998886 777777777777777556666666665554
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.5e-08 Score=86.37 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=46.4
Q ss_pred CeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeeccc----------ccccccceEECCCcEECCCcEEe-
Q 016989 295 DVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAEGD----------FNAKLGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~~~----------~~~~~~~sii~~~~~i~~~~~i~- 359 (379)
.+.||+++.|+++| .|. ++.||++|.||++|.|.++.- ......+++||++|.||.+|.|.
T Consensus 105 ~v~IG~~~~Ig~~~----~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~ 180 (252)
T 3jqy_B 105 KVIIGRRTTIGAGF----EVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMK 180 (252)
T ss_dssp EEEECTTCEECTTC----EEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECT
T ss_pred EEEECCCCEECCCc----EEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECC
Confidence 55667777777554 455 899999999999999977410 01112235667777766666553
Q ss_pred ccEECCCceeccc
Q 016989 360 NSIVLPNKTLNVS 372 (379)
Q Consensus 360 ~~ii~~~~~i~~~ 372 (379)
++.||++++|+.+
T Consensus 181 gv~IG~~~~Igag 193 (252)
T 3jqy_B 181 GVSVGSGSVIGYG 193 (252)
T ss_dssp TCEECTTCEECTT
T ss_pred CCEECCCCEECCC
Confidence 5555555555544
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-08 Score=90.32 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=28.3
Q ss_pred eEEec-CeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 290 ATIIG-DVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 290 ~~i~~-~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
++|.+ ++.|++++.|+++| .|. +++||++|.||++|.|.+ |+|++++.|+++++|.+|+|++++
T Consensus 59 ~~I~~~~a~I~~~a~I~~~~----~I~g~~~Ig~~~~Ig~~~~I~~----------~~Ig~~~~I~~~s~I~~s~I~~~~ 124 (334)
T 2pig_A 59 CWIYDENAMAFAGTEITGNA----RITQPCTLYNNVRIGDNVWIDR----------ADISDGARISDNVTIQSSSVREEC 124 (334)
T ss_dssp CEECCTTCEEETTCEECTTC----EEESSCEEESSCEECTTCEEES----------CEEESSCEECTTCEEESCEEESSE
T ss_pred eEEcCCCeEEcCCcEECCCc----EEeeeeeECCCcEECCCCEEEe----------EEEcCCCEEeCCcEEeccEEcCCe
Confidence 34444 44444444444332 233 444444444444444443 444444444444444444443333
Q ss_pred ee
Q 016989 368 TL 369 (379)
Q Consensus 368 ~i 369 (379)
.|
T Consensus 125 ~I 126 (334)
T 2pig_A 125 AI 126 (334)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.4e-08 Score=95.13 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=55.8
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
++.+.+++.||+++.|+++| .|. +++||++|.|+++|.|.+ |+||++|.|+++|.|.+++||+++
T Consensus 259 ~~~i~~~~~ig~~~~I~~~~----~i~~~~~Ig~~~~I~~~~~i~~----------~~ig~~~~I~~~~~i~~~~ig~~~ 324 (456)
T 2v0h_A 259 RFDLRGTLEHGKDVEIDVNV----IIEGNVKLGDRVKIGTGCVLKN----------VVIGNDVEIKPYSVLEDSIVGEKA 324 (456)
T ss_dssp GEEEEEEEEECSSCEECSSE----EEEEEEEECTTCEECTTCEEEE----------EEECTTCEECSSCEEEEEEECTTC
T ss_pred ccEEcCceEECCCCEEcCCc----EEcCCcEECCCCEECCCCEEEe----------EEEeCCCEEcCCeEEccCcCCCCc
Confidence 56777788888888888654 454 788888888888888875 888888888888888777777777
Q ss_pred eeccccc
Q 016989 368 TLNVSVH 374 (379)
Q Consensus 368 ~i~~~~~ 374 (379)
.|++++.
T Consensus 325 ~I~~~~~ 331 (456)
T 2v0h_A 325 AIGPFSR 331 (456)
T ss_dssp EECSSEE
T ss_pred EECCccE
Confidence 7777654
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.2e-08 Score=81.58 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=15.7
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceeccccc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNVSVH 374 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~ 374 (379)
+.||.+|+|.+|++|. +|+|+++++|..+++
T Consensus 141 v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp 172 (190)
T 3hjj_A 141 VWVGGGAIINPGVSIGDNAVIASGAVVTKDVP 172 (190)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBC
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECcccC
Confidence 4555555555555552 555555555555544
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.6e-08 Score=86.72 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=48.7
Q ss_pred CCCeEEecCeEECCCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEeecccc---------ccc-ccceEEC
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGDF---------NAK-LGITILG 347 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~---------~~~-~~~sii~ 347 (379)
++++.|.+++.|++++.|+++|+ ++|.|. +++|+.++.||++|.|..+.+. .++ ..+++||
T Consensus 4 ~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG 83 (259)
T 3hsq_A 4 HPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIG 83 (259)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEEC
T ss_pred CCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEEC
Confidence 34555555555555555555444 444444 5555555555555555554321 111 3557788
Q ss_pred CCcEECCCcEEe-------ccEECCCceecccc
Q 016989 348 EAVGVEDEVVVT-------NSIVLPNKTLNVSV 373 (379)
Q Consensus 348 ~~~~i~~~~~i~-------~~ii~~~~~i~~~~ 373 (379)
++|.|+++|.|. .++||+++.|++++
T Consensus 84 ~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~ 116 (259)
T 3hsq_A 84 DHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNS 116 (259)
T ss_dssp SSCEECTTCEEECCSBTTBCEEECSSCEECTTC
T ss_pred CCcEECCCCEECCCccCCCcEEECCCcEEcCCc
Confidence 888888888886 45555555554443
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.63 E-value=9.3e-08 Score=82.16 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=33.7
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|..+ +.||++|.||.++.|...+ .+++++
T Consensus 130 ~v~IG~~v~IG~~~~I~~g---------v~IG~~~vIgagsvV~~dv-p~~~v~ 173 (199)
T 3ftt_A 130 PIHIGSNTWFGGHVAVLPG---------VTIGEGSVIGAGSVVTKDI-PPHSLA 173 (199)
T ss_dssp CEEECSSEEECTTCEECTT---------CEECTTCEECTTCEECSCB-CTTEEE
T ss_pred CeEEcCCcEEcCCCEECCC---------CEECCCCEECCCCEECccc-CCCCEE
Confidence 5578888888888888877 8888888888888887654 444443
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.4e-08 Score=87.68 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=35.1
Q ss_pred CcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecc----cccccc-cceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 301 SAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEG----DFNAKL-GITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 301 ~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~----~~~~~~-~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
+++|+++|. .++.|+ ++.||++|.|++++.|.+.. .....| ++|.||.+|+|.+++.|. +|+|+++++|..
T Consensus 158 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~ 237 (304)
T 3eg4_A 158 GAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGK 237 (304)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcC
Confidence 444444544 445565 46666666666655443300 000111 115555555555555553 555555555554
Q ss_pred c
Q 016989 372 S 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 238 g 238 (304)
T 3eg4_A 238 S 238 (304)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=80.16 Aligned_cols=73 Identities=10% Similarity=0.079 Sum_probs=35.2
Q ss_pred CeEECCCcEECCCCCCCcEEe---ceEECCCCEECCCcEEeeccc-c-------ccc-ccceEECCCcEECCCcEEe-cc
Q 016989 295 DVYVHPSAKIHPTAKENAVVT---NAIVGWKSSIGRWSRVQAEGD-F-------NAK-LGITILGEAVGVEDEVVVT-NS 361 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~---~s~ig~~~~ig~~~~i~~~~~-~-------~~~-~~~sii~~~~~i~~~~~i~-~~ 361 (379)
++.||+++.++++| .|. ...||++|.||++|.|....- . ... -..++||++|.||.+|.|. ++
T Consensus 76 ~~~IG~~~~i~~~~----~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv 151 (188)
T 3srt_A 76 NIHVGENFFANYDC----IFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGI 151 (188)
T ss_dssp TEEECTTEEECTTE----EEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTC
T ss_pred CeEECCcccccCce----EEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCc
Confidence 44455555555443 333 336777777777777732110 0 000 0125566666665555553 44
Q ss_pred EECCCceecc
Q 016989 362 IVLPNKTLNV 371 (379)
Q Consensus 362 ii~~~~~i~~ 371 (379)
+||++++|+.
T Consensus 152 ~IG~~~vIga 161 (188)
T 3srt_A 152 TIGDNVVIGA 161 (188)
T ss_dssp EECSSEEECT
T ss_pred EECCCCEECC
Confidence 4444444443
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-08 Score=94.55 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=38.9
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEE-eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVV-TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i-~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
...+.+++.|++++.|+++| .| .++.||++|.|+++|.|.+ ++||++|.|+++|.|.+++||+++
T Consensus 262 ~~~~~~~~~ig~~~~i~~~~----~i~~~~~ig~~~~I~~~~~i~~----------~~Ig~~~~I~~~~~i~~~~Ig~~~ 327 (459)
T 4fce_A 262 RFDLRGELTHGRDITIDTNV----IIEGHVILGDRVRIGTGCVLKN----------CVIGDDSEISPYTVLEDARLDANC 327 (459)
T ss_dssp GEEEEEEEEECSSCEECTTE----EEEEEEEECTTCEECTTCEEES----------CEECTTCEECSSCEEESCEECTTC
T ss_pred eEEEeCcEEECCCcEECCCe----eeccceEECCCCEECCCCEEec----------cEECCCCEECCCcEEeCCEECCCC
Confidence 34455555555555555443 23 3555666666666666554 555666666555555555555555
Q ss_pred eecccc
Q 016989 368 TLNVSV 373 (379)
Q Consensus 368 ~i~~~~ 373 (379)
.|++++
T Consensus 328 ~ig~~~ 333 (459)
T 4fce_A 328 TVGPFA 333 (459)
T ss_dssp EECSSE
T ss_pred EECCcc
Confidence 555544
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=86.10 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=38.3
Q ss_pred CcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecc----cccccc-cceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 301 SAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEG----DFNAKL-GITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 301 ~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~----~~~~~~-~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
+++|+++|. .++.|. ++.||++|.|++++.|.+.. ...+.| +++.||.+|+|.++++|. +|+|+++++|.+
T Consensus 133 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~ 212 (276)
T 3gos_A 133 GAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQ 212 (276)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 455555544 455666 46777777776666553200 001111 126666666666666664 566666666665
Q ss_pred c
Q 016989 372 S 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 213 ~ 213 (276)
T 3gos_A 213 S 213 (276)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=84.98 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=34.7
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
.+++||++|.|+++|.|..+.... -..++||++|.|+.+++| ++|+||+++.|+.++
T Consensus 78 ~~~~IG~~~~I~~~~~I~~~~~~~--~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~ 135 (270)
T 1j2z_A 78 SELIIGEDNLIREFCMINPGTEGG--IKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGV 135 (270)
T ss_dssp CEEEECSSCEECTTCEECCCCTTT--TSEEEECSSCEECTTCEECTTCEECSSCEECTTC
T ss_pred cceEECCCCEECCCeEEcCCeecC--CccEEECCCcEECcccccCCCcEECCCcEEcCCc
Confidence 456677777777777776542110 013677777777777766 366666666655543
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.5e-08 Score=87.35 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=15.3
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceeccccc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNVSVH 374 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~ 374 (379)
+.||.+|+|..+++|. +|+||++++|..+++
T Consensus 258 V~IGaga~Il~gv~IGd~a~IGagsvV~~dVp 289 (310)
T 3f1x_A 258 VIVYSNATILGRVTIGKGATVGGNIWVTENVP 289 (310)
T ss_dssp CEECTTCEEESSCEECTTCEECSSCEECSCBC
T ss_pred cEEcCCCEECCCcEECCCCEECCCCEECCccC
Confidence 4444444444444442 455555555554444
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.5e-08 Score=90.19 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=36.8
Q ss_pred EECCCCEECCCcEEeeccc-----ccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 318 IVGWKSSIGRWSRVQAEGD-----FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 318 ~ig~~~~ig~~~~i~~~~~-----~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
.||++|.||++|.|+.+.. .......++||++|.||.+|. .++.||++++||.++.
T Consensus 260 ~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv-~GV~IGdgavIGAGsV 320 (387)
T 2rij_A 260 RISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV-TGIPLGDNCIVDAGIA 320 (387)
T ss_dssp EECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE-ECSCBCTTCEECTTCE
T ss_pred EECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc-CCcEECCCCEECCCCE
Confidence 4555666666666655531 111222388999999999988 7777777777777653
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=87.91 Aligned_cols=45 Identities=29% Similarity=0.302 Sum_probs=27.4
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeec
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~ 334 (379)
.++++.|.+++.|++++.|+++|+ |. ++.||++|.|+++|.|+++
T Consensus 122 i~p~a~i~~~a~Ig~~~~I~~~~~----I~~~v~IG~~~~I~~~~~Ig~~ 167 (372)
T 3pmo_A 122 IHPTAIVAADAEVDPSASVGAYAV----IESGARIGAGVSIGAHCVIGAR 167 (372)
T ss_dssp ECTTCEECTTCEECTTCEECTTCE----ECTTCEECTTCEECTTCEECTT
T ss_pred cCCCCEECCCCEECCCCEECCCCE----ECCCCEECCCCEECCCCEECCC
Confidence 457777777777777777776654 43 4555555555555555443
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=80.18 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=40.5
Q ss_pred cCeEECCCcEECCCCCCCcEE---eceEECCCCEECCCcEEeeccc--------cccc-ccceEECCCcEECCCcEEe-c
Q 016989 294 GDVYVHPSAKIHPTAKENAVV---TNAIVGWKSSIGRWSRVQAEGD--------FNAK-LGITILGEAVGVEDEVVVT-N 360 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i---~~s~ig~~~~ig~~~~i~~~~~--------~~~~-~~~sii~~~~~i~~~~~i~-~ 360 (379)
.++.||+++.|+++| .| ....||++|.|+++|.|....- .... ..+++||++|.||.+|.|. +
T Consensus 71 ~~v~IG~~~~I~~~~----~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~g 146 (182)
T 1ocx_A 71 YNIFLGNNFFANFDC----VMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG 146 (182)
T ss_dssp TTEEECSSEEECSSE----EEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT
T ss_pred CCEEECCCcEEeCCe----EEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCC
Confidence 445555555555443 34 2568888888888888853110 0000 1236666666666666653 4
Q ss_pred cEECCCceeccc
Q 016989 361 SIVLPNKTLNVS 372 (379)
Q Consensus 361 ~ii~~~~~i~~~ 372 (379)
+.||++++|+.+
T Consensus 147 v~IG~~~vIgag 158 (182)
T 1ocx_A 147 VTIGDNVVVASG 158 (182)
T ss_dssp CEECTTCEECTT
T ss_pred cEECCCCEECCC
Confidence 455555544443
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=86.80 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=11.3
Q ss_pred CcEEe-ceEECCCCEECCCcEEe
Q 016989 311 NAVVT-NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 311 ~~~i~-~s~ig~~~~ig~~~~i~ 332 (379)
++.|. ++.||++|.|++++.|.
T Consensus 49 ~~~I~g~~~IG~~~~I~~~a~I~ 71 (305)
T 3t57_A 49 SSHVFGNTELGESCVLMTGAVVG 71 (305)
T ss_dssp TCEECSSEEECTTCEECTTCEEC
T ss_pred CcEECCCcEECCCcEEccCcEec
Confidence 34444 55555555555555554
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-07 Score=79.76 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=21.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+++||++|.||.+|.|..+ +.||++|.||.++.|...
T Consensus 132 ~v~IG~~v~IG~~~~I~~g---------v~IG~~~vIgagsvV~~d 168 (188)
T 3srt_A 132 PVKIGDNVWIGGGVIITPG---------ITIGDNVVIGAGSVVTKD 168 (188)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECSSEEECTTCEECSC
T ss_pred CcEECCCcEEcCCCEECCC---------cEECCCCEECCCCEECcc
Confidence 4555555555555555555 555555555555555544
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=79.84 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=42.8
Q ss_pred ecCeEECCCcEECCCCCCCcEE---eceEECCCCEECCCcEEeeccc--------cccc-ccceEECCCcEECCCcEEe-
Q 016989 293 IGDVYVHPSAKIHPTAKENAVV---TNAIVGWKSSIGRWSRVQAEGD--------FNAK-LGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~~~~~i---~~s~ig~~~~ig~~~~i~~~~~--------~~~~-~~~sii~~~~~i~~~~~i~- 359 (379)
+.++.||+++.++++| .| .+..||++|.||++|.|....- .... ..+++||++|.||.+|.|.
T Consensus 72 g~~v~IG~~~~i~~~~----~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~ 147 (185)
T 2p2o_A 72 GYNIHVGENFFMNFDG----VILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINP 147 (185)
T ss_dssp STTEEECTTEEECSSE----EEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECT
T ss_pred cCCEEECCeeEEcCCe----EEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECC
Confidence 4455556666665443 34 4678888888888888853210 0000 1126667766666666664
Q ss_pred ccEECCCceecccc
Q 016989 360 NSIVLPNKTLNVSV 373 (379)
Q Consensus 360 ~~ii~~~~~i~~~~ 373 (379)
+++||++++|+.++
T Consensus 148 gv~IG~~~vIgags 161 (185)
T 2p2o_A 148 GVTIGDNAVIASGA 161 (185)
T ss_dssp TCEECTTCEECTTC
T ss_pred CCEECCCCEECCCC
Confidence 55555555555443
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=92.06 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=8.6
Q ss_pred CCeEEecCeEECCCcEECCC
Q 016989 288 KNATIIGDVYVHPSAKIHPT 307 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~ 307 (379)
+++.|.+++.||+++.|+++
T Consensus 285 ~~~~i~~~~~ig~~~~I~~~ 304 (468)
T 1hm9_A 285 ANVILKGQTKIGAETVLTNG 304 (468)
T ss_dssp SSCEEESSCEECTTCEECTT
T ss_pred CCcEECCCCEECCCCEECCC
Confidence 33444444444444444433
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=82.06 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=19.7
Q ss_pred ceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 343 ITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 343 ~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.++||++|.||.+|.|. ++.||++++|++++
T Consensus 119 ~v~IG~~v~IG~~a~I~~gv~IG~gavIgags 150 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEA 150 (220)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred CeEECCCcEECCCCEEeCCCEECCCCEEcCCC
Confidence 36677777777777764 55555555555543
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=87.76 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=23.2
Q ss_pred eEECCCcEECCCcEEe---------------------ccEECCCceeccccc
Q 016989 344 TILGEAVGVEDEVVVT---------------------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 344 sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~ 374 (379)
+.||++|.|+.++.|. +++|++++.||+++.
T Consensus 191 ~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~ 242 (374)
T 2iu8_A 191 VSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTT 242 (374)
T ss_dssp EEECTTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCE
T ss_pred ceECCCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcE
Confidence 7778888888777773 377888888887764
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=86.13 Aligned_cols=35 Identities=6% Similarity=0.008 Sum_probs=23.0
Q ss_pred cccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 340 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 340 ~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
.+.+|+|+++|.|+.+|.|.+|+|++++.|++++.
T Consensus 159 ~I~~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~ 193 (334)
T 2pig_A 159 TVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFAL 193 (334)
T ss_dssp EEESCEEETTCEECTTCEEESEEECTTCEECTTCE
T ss_pred EEeccEEcCCCEEcCCeEEeCcEEcCCCEECCCcE
Confidence 44456666667777777777777777777766543
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=79.41 Aligned_cols=45 Identities=24% Similarity=0.308 Sum_probs=30.5
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceec
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~ 370 (379)
+++||++|.||++|.|..+ +.||++|+||.|+.|... |.+++.+.
T Consensus 128 ~v~IG~~v~Ig~~a~I~~g---------v~IG~~~vIgagsvV~~d-ip~~~vv~ 172 (182)
T 1ocx_A 128 PVTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVTKD-VPDNVVVG 172 (182)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCSSEEEE
T ss_pred CeEEeCCeEECCCCEECCC---------cEECCCCEECCCCEECCc-CCCCcEEE
Confidence 5677777777777777666 777777777777777654 45555543
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-07 Score=83.86 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=39.8
Q ss_pred cCeEECCCcEECCCCC--CCcEEec---------eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccE
Q 016989 294 GDVYVHPSAKIHPTAK--ENAVVTN---------AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI 362 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~--~~~~i~~---------s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~i 362 (379)
.+++||+++.|+++|. .+++|++ ++||++|.||++|.|.++ ++||++|+||.|+.|...+
T Consensus 183 ~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~g---------v~IG~~a~IGagsvV~kdV 253 (287)
T 3mc4_A 183 TGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGN---------IQVGQCSKIAAGSVVLKSV 253 (287)
T ss_dssp TTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESS---------CEECTTCEECTTCEECSCB
T ss_pred CCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCC---------cEECCCCEECCCCEEcccc
Confidence 3445555555555554 4555553 577777777777777776 7888888888888776543
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=79.11 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=34.4
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 371 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~ 371 (379)
+++||++|.||++|.|..+ +.||++|.||.|+.|... |.++++++-
T Consensus 130 ~v~IGd~v~IG~~~~I~~g---------v~IG~~~vIgagsvV~~~-vp~~~vv~G 175 (185)
T 2p2o_A 130 PVVIGHNVWIGGRAVINPG---------VTIGDNAVIASGAVVTKD-VPANAVVGG 175 (185)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEEE
T ss_pred CeEEcCCeEECCCCEECCC---------CEECCCCEECCCCEECCC-CCCCcEEEc
Confidence 6778888888888888766 888888888888888655 566666653
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-07 Score=83.81 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=16.8
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceeccccc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNVSVH 374 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~ 374 (379)
+.||.+|+|..+++|. +|+||++++|..+++
T Consensus 230 v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp 261 (313)
T 3q1x_A 230 VTIGTGAKVLGNIIVGSHVRIGANCWIDRDVD 261 (313)
T ss_dssp CEECTTCEEESSCEECSSEEECTTCEECSCBC
T ss_pred CEECCCCEECCCcEECCCCEECCCCEECCCcC
Confidence 5555555555555553 555555555555554
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-07 Score=78.40 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=42.4
Q ss_pred ecCeEECCCcEECCCCCCCcEEe---ceEECCCCEECCCcEEeeccc-c-------cc-cccceEECCCcEECCCcEEe-
Q 016989 293 IGDVYVHPSAKIHPTAKENAVVT---NAIVGWKSSIGRWSRVQAEGD-F-------NA-KLGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~~~~~i~---~s~ig~~~~ig~~~~i~~~~~-~-------~~-~~~~sii~~~~~i~~~~~i~- 359 (379)
+.++.||+++.|+++| .|. ...||++|.||++|.|....- . .. ...+++||++|.||.+|.|.
T Consensus 73 g~~i~IG~~~~I~~~~----~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~ 148 (203)
T 1krr_A 73 GSNIHIGRNFYANFNL----TIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINP 148 (203)
T ss_dssp STTEEECSSCEECSCE----EEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECT
T ss_pred CCCeEECCeeEECCcc----EEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeC
Confidence 3445555555555443 443 378888888888888764310 0 00 11235666666666666553
Q ss_pred ------ccEECCCceeccccc
Q 016989 360 ------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ------~~ii~~~~~i~~~~~ 374 (379)
+|+|+++++|..+++
T Consensus 149 gv~IG~~~vIgagsvV~~dvp 169 (203)
T 1krr_A 149 GVTIGDNSVIGAGSIVTKDIP 169 (203)
T ss_dssp TCEECTTCEECTTCEECSCBC
T ss_pred CeEECCCCEECCCCEECCCcC
Confidence 444555555544444
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-07 Score=90.37 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=35.6
Q ss_pred EEeceEECCCCEECCCcEEeeccccccccc-ceEECCCcEECCCcEEe-------ccEECCCceeccccc
Q 016989 313 VVTNAIVGWKSSIGRWSRVQAEGDFNAKLG-ITILGEAVGVEDEVVVT-------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 313 ~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~-~sii~~~~~i~~~~~i~-------~~ii~~~~~i~~~~~ 374 (379)
.+++|+||++|.||++|.+.+. .+..+ +|+||++|.||.+|.|. +|+|++++.|.++++
T Consensus 383 ~i~d~~Ig~~v~IG~g~i~~n~---dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp 449 (501)
T 3st8_A 383 YVGDADIGEYSNIGASSVFVNY---DGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVP 449 (501)
T ss_dssp EEESEEECSSCEECTTCEEECB---CSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBC
T ss_pred eecCceEcCCCEECCCEEEEcc---cCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccC
Confidence 3445667777777777666441 12222 28888888888877662 555555555555555
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.5e-07 Score=80.38 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=29.3
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCce
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKT 368 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~ 368 (379)
++||++|.||+++.|.++ ++||++|+||.|+.|... |.++++
T Consensus 190 ~~IGd~v~IGaga~Il~g---------v~IG~~a~IGagsvV~~d-Vp~~~~ 231 (267)
T 1ssq_A 190 PKVREGVMIGAGAKILGN---------IEVGKYAKIGANSVVLNP-VPEYAT 231 (267)
T ss_dssp CEECTTCEECTTCEEESS---------CEECTTCEECTTCEECSC-BCTTCE
T ss_pred eEECCCeEEcCCCEEeCC---------cEECCCCEECCCCEEccC-CCCCCE
Confidence 577777777777777766 777888888887777543 344443
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-05 Score=77.40 Aligned_cols=180 Identities=17% Similarity=0.218 Sum_probs=110.9
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc-----------EEEEcccchHHHHHHHHhhc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVSSIS 73 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~~~~ 73 (379)
..++.+|+|||| .||||+- ..||.++|+. |++++++.++.+.. ++.+.....+...+|++++
T Consensus 125 l~kvavvlLaGG--lGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~- 198 (528)
T 3r3i_A 125 LNKLVVVKLNGG--LGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY- 198 (528)
T ss_dssp CTTEEEEEECCC--BCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG-
T ss_pred cCceEEEEeCCC--CccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc-
Confidence 357899999999 9999977 7899999997 99999999998875 4455555556688888764
Q ss_pred ccCCccEEEecCC---------------------------CCCChHHHHHH-----HHHhhccCCCCeEEEEcCCeee-c
Q 016989 74 NELRIPVRYLRED---------------------------KPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCC-S 120 (379)
Q Consensus 74 ~~~~~~i~~~~~~---------------------------~~~g~~~al~~-----~~~~i~~~~~~~~lv~~gD~i~-~ 120 (379)
..++.++.+..|. .+.|.++.... .++.+....-+++.+.+.|++. .
T Consensus 199 ~~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~ 278 (528)
T 3r3i_A 199 NHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGAT 278 (528)
T ss_dssp TTSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCC
T ss_pred CccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccc
Confidence 3455555443321 13344432222 2334433334689999999998 4
Q ss_pred CChHHHHHHHHhc----CCceEEEEEEeCCCCCCceeEEEEeCCCC--cEEEeeecCCC--------cccceeeeeEEEe
Q 016989 121 FPLPEMLDAHRNY----GGMGTILVIKVSAESASQFGELVADPDTN--ELLHYTEKPET--------FVSDLINCGVYVF 186 (379)
Q Consensus 121 ~dl~~~l~~~~~~----~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--~v~~~~ekp~~--------~~~~~~~~Giy~~ 186 (379)
.|. .++..+..+ ++++.+-+.+... ....-|.+... +| +++.+.+-|.. ..-.+.|+..++|
T Consensus 279 vDp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~-~dek~Gvl~~~--dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~ 354 (528)
T 3r3i_A 279 VDL-YILNHLMNPPNGKRCEFVMEVTNKTR-ADVKGGTLTQY--EGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWI 354 (528)
T ss_dssp CCH-HHHHHHSSCSSSCCCSEEEEECCCCT-TCCSSCEEECS--SSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEE
T ss_pred cCH-HHHHHHHhcccccCCcEEEEEeEccc-cCCcccEEEEE--CCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEE
Confidence 333 355555555 6666554443221 12233555543 34 34444443321 2344678999999
Q ss_pred CHhhHHHhh
Q 016989 187 TPDIFNAIQ 195 (379)
Q Consensus 187 ~~~~l~~l~ 195 (379)
+-+.++.+.
T Consensus 355 ~L~~L~~v~ 363 (528)
T 3r3i_A 355 SLAAVKRLQ 363 (528)
T ss_dssp EHHHHHHHH
T ss_pred EHHHHHHHH
Confidence 977665443
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=79.29 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=21.9
Q ss_pred CeEE--EEcCCeeecCChHHHHHHHHhc
Q 016989 108 SHIF--LLNCDVCCSFPLPEMLDAHRNY 133 (379)
Q Consensus 108 ~~~l--v~~gD~i~~~dl~~~l~~~~~~ 133 (379)
|++| ++++|.+...+|.+++..|...
T Consensus 40 EP~L~~~l~~~IL~~~~l~~aLa~~La~ 67 (289)
T 1t3d_A 40 EPMLASFYHATLLKHENLGSALSYMLAN 67 (289)
T ss_dssp CGGGHHHHHHHTTTCSSHHHHHHHHHHH
T ss_pred CCHHHHHhcccccCCCCHHHHHHHHHhc
Confidence 4688 8899999899999999988764
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7.7e-07 Score=80.70 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=7.1
Q ss_pred cEEe-ceEECCCCEECC
Q 016989 312 AVVT-NAIVGWKSSIGR 327 (379)
Q Consensus 312 ~~i~-~s~ig~~~~ig~ 327 (379)
+.|+ ++.||++|.|+.
T Consensus 231 v~IGdnv~IgpGa~IgG 247 (347)
T 3r5d_A 231 VFVGKGSDLGGGCSTMG 247 (347)
T ss_dssp CEECTTEEECTTCEECC
T ss_pred EEECCCCEECCCCEEcc
Confidence 3444 444444444443
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=87.39 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=55.4
Q ss_pred EecCeEECCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceec
Q 016989 292 IIGDVYVHPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 292 i~~~~~i~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~ 370 (379)
+.+.+.+++.+.++++.. .++.+.++.||++|.| .++.|.+ |+||++|+||++|.|.+|+|++++.|+
T Consensus 299 i~~~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~----------~~ig~~~~I~~~~~i~~~~i~~~~~i~ 367 (420)
T 3brk_X 299 IWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNR----------SLLFTGVRANSYSRLENAVVLPSVKIG 367 (420)
T ss_dssp CCCCCCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEES----------CEECTTCEECTTCEEEEEEECTTCEEC
T ss_pred eeeccccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeC----------cEEcCCCEECCCCEEcceEEcCCCEEC
Confidence 334444555555543100 2456789999999999 8888865 999999999999999999999999999
Q ss_pred cccc
Q 016989 371 VSVH 374 (379)
Q Consensus 371 ~~~~ 374 (379)
+++.
T Consensus 368 ~~~~ 371 (420)
T 3brk_X 368 RHAQ 371 (420)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 9875
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-07 Score=79.95 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=24.0
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
++||++|.||++|.|..+ +.||++|+||.++.|...
T Consensus 164 v~Igd~v~IG~~a~I~~g---------v~IG~~~~IgagsvV~~~ 199 (252)
T 3jqy_B 164 IIISSYVWVGRNVSIMKG---------VSVGSGSVIGYGSIVTKD 199 (252)
T ss_dssp EEECSSCEECSSEEECTT---------CEECTTCEECTTCEECSC
T ss_pred eEEecCcEECCCCEECCC---------CEECCCCEECCCCEECcc
Confidence 466777777777666666 667777777776666543
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=74.10 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=35.6
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|.++ +.||++|+||.|+.|...+ .+++++
T Consensus 132 ~v~IG~~v~IG~~~~I~~g---------v~IG~~~vIgagsvV~~dv-p~~~v~ 175 (195)
T 3nz2_A 132 PIVIEDDVWIGGNVVINQG---------VTIGARSVVAANSVVNQDV-PPDTLV 175 (195)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEECSCB-CSSEEE
T ss_pred CeEECCCCEEcCCCEECCC---------CEECCCCEECCCCEEcccc-CCCcEE
Confidence 6789999999999999887 9999999999999997664 344443
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=75.25 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=43.5
Q ss_pred eEECCCcEECCCCCCCcEE----eceEECCCCEECCCcEEeeccc---cc-------ccccceEECCCcEECCCcEEe-c
Q 016989 296 VYVHPSAKIHPTAKENAVV----TNAIVGWKSSIGRWSRVQAEGD---FN-------AKLGITILGEAVGVEDEVVVT-N 360 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i----~~s~ig~~~~ig~~~~i~~~~~---~~-------~~~~~sii~~~~~i~~~~~i~-~ 360 (379)
+.||+++.|++. +.+ .+++||++|.||++|.|.+..- .. .....++||++|.||.+|.|. +
T Consensus 80 ~~IG~~~~Ig~~----~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~g 155 (215)
T 2wlg_A 80 LQIQAKTTMGNG----EITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKG 155 (215)
T ss_dssp EEECTTCEECSE----EEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTT
T ss_pred EEEcCCCEECCE----EEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCC
Confidence 555555555542 233 5788999999999999986310 00 001225777777777776663 5
Q ss_pred cEECCCceecccc
Q 016989 361 SIVLPNKTLNVSV 373 (379)
Q Consensus 361 ~ii~~~~~i~~~~ 373 (379)
+.||++++|+.++
T Consensus 156 v~Ig~~~vIgags 168 (215)
T 2wlg_A 156 VCIPNNVVVGSHT 168 (215)
T ss_dssp CEECSSCEECTTC
T ss_pred CEECCCCEECCCC
Confidence 5555555555543
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=78.14 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=3.9
Q ss_pred ECCCcEECCCc
Q 016989 346 LGEAVGVEDEV 356 (379)
Q Consensus 346 i~~~~~i~~~~ 356 (379)
||++|+||.|+
T Consensus 252 IGd~~iIGAGS 262 (332)
T 3fsy_A 252 LGDDCVVEAGL 262 (332)
T ss_dssp BCSSCEECTTC
T ss_pred ECCCCEECCCC
Confidence 33333333333
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8e-07 Score=77.55 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=24.7
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+++||++|.||.+|.|.++ +.||++|.||.++.|...
T Consensus 119 ~v~IG~~v~IG~~a~I~~g---------v~IG~gavIgagsvV~~d 155 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMPG---------VKIGDGAIIAAEAVVTKN 155 (220)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC
T ss_pred CeEECCCcEECCCCEEeCC---------CEECCCCEEcCCCEEccc
Confidence 5667777777777666666 666777777776666544
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=72.61 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=36.8
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|.++ +.||++|+||.|+.|... |.+++++
T Consensus 131 ~v~IGd~v~IG~~a~I~~g---------v~IG~~~vIgagsvV~~d-vp~~~vv 174 (203)
T 1krr_A 131 PITIGNNVWIGSHVVINPG---------VTIGDNSVIGAGSIVTKD-IPPNVVA 174 (203)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CcEECCCeEECCCCEEeCC---------eEECCCCEECCCCEECCC-cCCCcEE
Confidence 6889999999999999888 999999999999999765 4666654
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=74.26 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=9.3
Q ss_pred ceEECCCCEECCCcEE
Q 016989 316 NAIVGWKSSIGRWSRV 331 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i 331 (379)
++.||++|.|+++|.|
T Consensus 58 ~v~IG~~~~I~~~v~i 73 (212)
T 3eev_A 58 KLVIGSFCSIGSGAVF 73 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCCEE
Confidence 5556666666666655
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=72.72 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=29.3
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|.++ +.||++|+||.++.|... |.+++++
T Consensus 111 ~v~IG~~v~IG~~a~I~~g---------v~IG~~~iIgagsvV~~d-Vp~~~vv 154 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPG---------VKIGHGAIIASRSVVTKD-VAPYEVV 154 (212)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CeEECCCCEECCCCEEcCC---------CEECCCCEECCCCEEccc-cCCCcEE
Confidence 5677777777777777766 777777777777777543 3455444
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.3e-06 Score=73.30 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred eEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc----------
Q 016989 296 VYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS---------- 361 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~---------- 361 (379)
+.||+++.|++++ .+. ++.||++|.|++.+.+.. +-..++||++|.|+++|.|.++
T Consensus 59 v~IG~~~~I~~~~----~i~~~~~~~~IG~~~~Ig~~~ii~~------~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~ 128 (215)
T 2wlg_A 59 LFIADDVEIMGLV----CSLHSDCSLQIQAKTTMGNGEITIA------EKGKISIGKDCMLAHGYEIRNTDMHPIYSLEN 128 (215)
T ss_dssp EEECTTCEEESEE----EEECTTCEEEECTTCEECSEEEEEC------TTCEEEECTTCEECTTEEEESCCSSCEEETTT
T ss_pred EEECCCCEECCCe----EEEcCCceEEEcCCCEECCEEEEEe------CCCCEEECCCCEEcCCEEEECCCCcccccccc
Confidence 6777777777554 343 388888888888555421 0011788888888888888642
Q ss_pred ----------EECCCceeccccc
Q 016989 362 ----------IVLPNKTLNVSVH 374 (379)
Q Consensus 362 ----------ii~~~~~i~~~~~ 374 (379)
+||+++.||.++.
T Consensus 129 ~~~~~~~~~v~Igd~v~IG~~~~ 151 (215)
T 2wlg_A 129 GERINHGKDVIIGNHVWLGRNVT 151 (215)
T ss_dssp CBBCCCCCCEEECTTCEECTTCE
T ss_pred cccccCCCCeEECCCcEECCCCE
Confidence 6666666666553
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-06 Score=80.71 Aligned_cols=28 Identities=21% Similarity=0.435 Sum_probs=17.7
Q ss_pred CEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 323 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 323 ~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
|.||++|.|++ ++||++|.||+||.|.+
T Consensus 389 ~~Ig~~~~i~~----------~~Ig~~~~IG~~~~i~~ 416 (451)
T 1yp2_A 389 IGIGKNCHIKR----------AIIDKNARIGDNVKIIN 416 (451)
T ss_dssp SEECTTCEEES----------EEECTTCEECTTCEECC
T ss_pred EEECCCCEEec----------cEeCCCcEECCCCEEeC
Confidence 66666666654 66666666666666643
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.8e-06 Score=71.76 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=37.2
Q ss_pred ceEECCCCEECCCcEEeec----ccc---------------------c-ccccceEECCCcEECCCcEEe-ccEECCCce
Q 016989 316 NAIVGWKSSIGRWSRVQAE----GDF---------------------N-AKLGITILGEAVGVEDEVVVT-NSIVLPNKT 368 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~----~~~---------------------~-~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~ 368 (379)
+++||++|.|+++|.|..+ .+. . .....++||++|.||.+|.|. ++.||++++
T Consensus 65 ~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~ 144 (219)
T 4e8l_A 65 KLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAI 144 (219)
T ss_dssp CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred CEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccccccCCcEECCCeEECCCCEEcCCCEECCCCE
Confidence 6788888888888888421 000 0 112347788888888888774 566666666
Q ss_pred ecccc
Q 016989 369 LNVSV 373 (379)
Q Consensus 369 i~~~~ 373 (379)
|+.++
T Consensus 145 Igags 149 (219)
T 4e8l_A 145 IAAEA 149 (219)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 66553
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=7.4e-06 Score=70.66 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=13.0
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
++||++|.||.+|.|. ++.||++++|+.
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Iga 142 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAA 142 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECT
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcC
Confidence 4455555555555442 344444444433
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.2e-06 Score=76.06 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=9.3
Q ss_pred cccchhhcCC--ccchhhc
Q 016989 249 TMDFWEQIKT--PGMSLKC 265 (379)
Q Consensus 249 ~~~~w~~i~t--~~d~~~a 265 (379)
...+|.+.++ |.++...
T Consensus 168 ~~~~Wt~~G~~~~~~f~~~ 186 (387)
T 2rij_A 168 SNVAWSDDKPIELEYLRAN 186 (387)
T ss_dssp CCEEEETTEEECHHHHHHH
T ss_pred ceeeeccCcccCHHHHHHH
Confidence 3456777766 4444433
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=67.10 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=9.4
Q ss_pred eceEECCCCEECCCcEE
Q 016989 315 TNAIVGWKSSIGRWSRV 331 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i 331 (379)
....||++|.|+++|.|
T Consensus 55 ~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp CCEEECSSCEECTTCEE
T ss_pred cCEEEcCCCEECCCCEE
Confidence 34555555555555554
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00017 Score=68.98 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=109.6
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCcee-CCcchhHHHHHhcCc-----------EEEEcccchHHHHHHHHhhccc
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR-----------IYLVGFYEEREFALYVSSISNE 75 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi-~g~pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~~~~~~ 75 (379)
++.+|.|||| .||||+- ..||.++|+ .|+++++..++++.. ++.+.....+...+|++++ +.
T Consensus 76 kvavvlLaGG--lGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~-~~ 149 (484)
T 3gue_A 76 QAVVLKLNGG--LGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKY-PT 149 (484)
T ss_dssp TEEEEEEECC--CCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGC-HH
T ss_pred hcEEEEEcCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhC-cc
Confidence 6789999999 9999977 789999999 799999999998875 4445555555688888764 22
Q ss_pred CCc---cEEEecC-----------------------CCCCChHHHHHH-----HHHhhccCCCCeEEEEcCCeeecCChH
Q 016989 76 LRI---PVRYLRE-----------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPLP 124 (379)
Q Consensus 76 ~~~---~i~~~~~-----------------------~~~~g~~~al~~-----~~~~i~~~~~~~~lv~~gD~i~~~dl~ 124 (379)
+|+ .+.+..| ..+.|.++-... .++.+....-+++.+.+.|++...-=.
T Consensus 150 Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp 229 (484)
T 3gue_A 150 LYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDV 229 (484)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCH
T ss_pred cCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCH
Confidence 332 1211111 013465543332 133343333468999999995532225
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEe--------CCCCc--EEEeeecCCC--------cccceeeeeEEEe
Q 016989 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVAD--------PDTNE--LLHYTEKPET--------FVSDLINCGVYVF 186 (379)
Q Consensus 125 ~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d--------~~~~~--v~~~~ekp~~--------~~~~~~~~Giy~~ 186 (379)
.++-.+.++++++.+-+.+.... ...-|.+... ..+|+ +..+.+-|.. ....+.+++..++
T Consensus 230 ~~lG~~~~~~~d~~~kvv~Kt~~-dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~ 308 (484)
T 3gue_A 230 RLLDYMHEKQLGFLMEVCRRTES-DKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWI 308 (484)
T ss_dssp HHHHHHHHTTCSEEEEEEECCTT-CCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEEEECCCC-CCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEE
Confidence 56777788888887766664321 2233544432 11444 4444443321 1234568888888
Q ss_pred CHhhH-HHhh
Q 016989 187 TPDIF-NAIQ 195 (379)
Q Consensus 187 ~~~~l-~~l~ 195 (379)
+-..+ +.+.
T Consensus 309 ~l~~l~~~l~ 318 (484)
T 3gue_A 309 NLMELKKMMD 318 (484)
T ss_dssp EHHHHHHHHH
T ss_pred EHHHHHHHHH
Confidence 86555 4443
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.9e-05 Score=65.45 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=31.1
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|.++ +.||++|.|+.++.|... +.+++.+
T Consensus 113 ~v~Ig~~v~IG~~a~I~~g---------v~Ig~~~~Igags~V~~~-v~~~~i~ 156 (209)
T 1mr7_A 113 DTIIGNDVWIGKDVVIMPG---------VKIGDGAIVAANSVVVKD-IAPYMLA 156 (209)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CcEECCCCEEcCCCEEcCC---------CEECCCCEEcCCCEEcCC-CCCCeEE
Confidence 5777777777777777776 777777777777777654 3555544
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=62.88 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=32.1
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|.++ +.||++|.|+.++.|... |.+++++
T Consensus 118 ~v~Igd~v~IG~~a~I~~g---------v~IG~~~~IgagsvV~~d-v~~~~~~ 161 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMPG---------VKIGDGAIIAAEAVVTKN-VAPYSIV 161 (219)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CcEECCCeEECCCCEEcCC---------CEECCCCEECCCCEEccc-CCCCeEE
Confidence 6778888888888888777 788888888888877644 3555544
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0001 Score=63.59 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=31.9
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|.++ +.||++|.||.++.|... |.+++.+
T Consensus 110 ~v~IG~~v~IG~~a~I~~g---------v~Ig~~~~IgagsvV~~~-vp~~~~~ 153 (212)
T 1xat_A 110 DTLIGHEVWIGTEAMFMPG---------VRVGHGAIIGSRALVTGD-VEPYAIV 153 (212)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CeEECCCCEECCCCEEeCC---------CEECCCCEECCCCEEccc-CCCCcEE
Confidence 5778888888888777776 788888888888877654 4555544
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00077 Score=66.28 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=108.4
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc--------EEEEcccchHHHHHHHHhhcccC
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR--------IYLVGFYEEREFALYVSSISNEL 76 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~--------iiv~~~~~~~~i~~~l~~~~~~~ 76 (379)
++.+|+|||| .||||+- ..||.++|++ |++++++.++++.+ ++.+.....+...+|+..+.-.
T Consensus 114 kvavvllaGG--lGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl~- 187 (630)
T 3ogz_A 114 KTVFVLVAGG--LGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLE- 187 (630)
T ss_dssp GEEEEEECCC--EEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTCC-
T ss_pred hceEEEecCC--cccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCCC-
Confidence 6789999999 9999987 7899999997 99999999999876 4455555556688888762110
Q ss_pred CccEEEecCC----------------------CCCChHHHHHH-----------------------HHHhhccCCCCeEE
Q 016989 77 RIPVRYLRED----------------------KPHGSAGALYN-----------------------FRDLIMEDNPSHIF 111 (379)
Q Consensus 77 ~~~i~~~~~~----------------------~~~g~~~al~~-----------------------~~~~i~~~~~~~~l 111 (379)
..++.+..|. .+.|.++.... .++.+....-+++.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 0123322111 13455543332 23333333346899
Q ss_pred EEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE-eCCCCcE-----EEeee---------cCCC--
Q 016989 112 LLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNEL-----LHYTE---------KPET-- 173 (379)
Q Consensus 112 v~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~~v-----~~~~e---------kp~~-- 173 (379)
+.+.|+++ ...-..++-.+.++++++.+-+.+.. ....-|.+.. ...+|+. +.|.+ +|+.
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~--p~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~ 345 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRV--PKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDE 345 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCC--SSCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC-------
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECC--CCcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccc
Confidence 99999976 33333466777888888776665532 3345565554 1124554 22211 0110
Q ss_pred ------cccceeeeeEEEeCHh-hHHHhhc
Q 016989 174 ------FVSDLINCGVYVFTPD-IFNAIQG 196 (379)
Q Consensus 174 ------~~~~~~~~Giy~~~~~-~l~~l~~ 196 (379)
......|+..++|+-+ +.+.+.+
T Consensus 346 ~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 346 VSDPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp -----CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred cccccccccccccceeeeEEHHHHHHHHHh
Confidence 1111348999999965 5556653
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0004 Score=59.79 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=68.0
Q ss_pred ceEEEEEe--cCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----E-EEEcccchHHHHHHHHhhcccCCcc
Q 016989 8 KVVAVIMV--GGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----I-YLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 8 ~~~aVIla--~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----i-iv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
.|.+||++ |. .-|||.+ .+.+......++||++|+++.+.. + ++++..... . ..+++.
T Consensus 3 ~~~~vip~k~g~--~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~~--~-------~~~~~~ 68 (211)
T 2i5e_A 3 AMRAVIPYKKAG--AKSRLSP---VLSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYGL--E-------EMTEAR 68 (211)
T ss_dssp CCEEEEECCCTT--TTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTC--S-------SCCSSE
T ss_pred ceEEEEEeCCCC--CccccCc---cCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHHH--H-------hhcCCE
Confidence 47899999 77 8888876 333333446689999999999865 6 666654321 1 113443
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHH
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLD 128 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~ 128 (379)
+ +.+. .|.++++..+.+.+. +.++++.||+|+ ...+..+++
T Consensus 69 ~--v~~~--~gl~~sl~~a~~~~~----~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 69 V--LLDE--KDLNEALNRYLKEAE----EPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp E--EECC--SCHHHHHHHHHHHCC----SCEEEECSCCTTCCHHHHHHHTT
T ss_pred E--EECC--CCHHHHHHHHHHhcC----CCEEEEcCCcCCCCHHHHHHHHc
Confidence 3 4334 788999999887662 369999999998 445676665
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=3.4 Score=35.34 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=56.3
Q ss_pred chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCC--------CCCChHHHHHHHHHhhccCC
Q 016989 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLRED--------KPHGSAGALYNFRDLIMEDN 106 (379)
Q Consensus 42 pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~--------~~~g~~~al~~~~~~i~~~~ 106 (379)
..|..+|+.+.. |+|+-....+...+.+..... ...+.++..+ ...|.+.+.-.+++..+.
T Consensus 14 ~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g-- 89 (255)
T 1qg8_A 14 DYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEG-- 89 (255)
T ss_dssp TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--STTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--cCCEEEEecccccccccccccCHHHHHHHHHHHcCC--
Confidence 556666666643 555544333334555554422 3456666555 566888888888877654
Q ss_pred CCeEEEEcCCeeecCC-hHHHHHHHHhc
Q 016989 107 PSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (379)
Q Consensus 107 ~~~~lv~~gD~i~~~d-l~~~l~~~~~~ 133 (379)
++++++.+|..+..+ +..+++.+.+.
T Consensus 90 -~~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 90 -EYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp -SEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred -CEEEEeCCCCccChHHHHHHHHHHHhC
Confidence 589999999999554 78888877665
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.81 E-value=4.3 Score=34.24 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=40.1
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGT 138 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~t 138 (379)
+.++.. ...|.+.+.-.+++..+. ++++++.+|..+..+ |..+++...+.+.++.
T Consensus 62 i~~i~~-~n~G~~~a~N~g~~~a~g---~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v 117 (240)
T 3bcv_A 62 IKVIHK-KNAGLGMACNSGLDVATG---EYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAV 117 (240)
T ss_dssp EEEEEC-CCCCHHHHHHHHHHHCCS---SEEEECCTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred EEEEEC-CCCChHHHHHHHHHHcCC---CEEEEECCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence 444443 467888888888887654 589999999998554 7888887766555553
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=86.62 E-value=4.9 Score=38.28 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=61.1
Q ss_pred ceeCCc--chhHHHHHhcCc---------EEEEcccchH-HHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhc
Q 016989 36 FPLGGQ--PMVHHPISACKR---------IYLVGFYEER-EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (379)
Q Consensus 36 lpi~g~--pli~~~i~~l~~---------iiv~~~~~~~-~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~ 103 (379)
+|.-|+ ..|...|+.+.+ |+|+-....+ ...+.+..+...++..+.++..+...|-+.+...+++...
T Consensus 35 Ip~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~ 114 (472)
T 1xhb_A 35 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR 114 (472)
T ss_dssp EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc
Confidence 444455 366666666543 5555332211 1233333322233335666666666788888888888765
Q ss_pred cCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCce
Q 016989 104 EDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 104 ~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ 137 (379)
. +.++++++|..+ +.-|..+++...+.+..+
T Consensus 115 g---d~i~flD~D~~~~p~~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 115 G---QVITFLDAHCECTAGWLEPLLARIKHDRRTV 146 (472)
T ss_dssp S---SEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred C---CeEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence 4 589999999998 455899999877655433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 379 | ||||
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 2e-36 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 6e-35 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 3e-32 | |
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 7e-23 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 6e-18 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 2e-13 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 2e-13 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 1e-10 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 9e-10 | |
| d1vgwa_ | 226 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 2e-09 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 3e-07 | |
| d1i52a_ | 225 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 3e-07 | |
| d1vpaa_ | 221 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 5e-07 | |
| d1w77a1 | 226 | c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- | 6e-07 | |
| d1w55a1 | 205 | c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, | 6e-05 | |
| d1eyra_ | 225 | c.68.1.13 (A:) CMP acylneuraminate synthetase {Nei | 0.001 | |
| d1qwja_ | 228 | c.68.1.13 (A:) CMP acylneuraminate synthetase {Mou | 0.003 | |
| d1e5ka_ | 188 | c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro | 0.004 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 131 bits (332), Expect = 2e-36
Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 13/201 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREF 65
+I+ GG GTR P +L I K L P+ +PM+++P+S + I ++ ++
Sbjct: 4 GIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ + + ++Y + P G A A N +L ++ E
Sbjct: 62 FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGES--FIGNDLSALVLGDNLYYGHDFHE 119
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+L + ++ V ++G + D + + EKP S+ G+Y
Sbjct: 120 LLGSASQRQTGASVFAYHVL--DPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYF 176
Query: 186 FTPDIFNAIQGVS-SQRKDRE 205
+ + + + + S R + E
Sbjct: 177 YDQQVVDIARDLKPSPRGELE 197
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 127 bits (322), Expect = 6e-35
Identities = 40/201 (19%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREF 65
+I+ GG GTR P++ + K L P+ +PM+++P+S + I ++ E++ +
Sbjct: 4 GIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ +E I + Y + P G A A + + +L ++
Sbjct: 62 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPS--CLVLGDNIFFGQGFSP 119
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
L T+ +V +FG + D + + EKP+ S+ G+Y
Sbjct: 120 KLRHVAARTEGATVFGYQV--MDPERFGVVEFDDN-FRAISLEEKPKQPKSNWAVTGLYF 176
Query: 186 FTPDIFNAIQGVS-SQRKDRE 205
+ + + V S+R + E
Sbjct: 177 YDSKVVEYAKQVKPSERGELE 197
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 120 bits (303), Expect = 3e-32
Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREF 65
+++ GG GTR P++ + K L P+ +PM+++P+S + I ++ +
Sbjct: 6 GIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + Y +++P G A A +D I + +L +V E
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKV--ALVLGDNVFYGHRFSE 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+L + I V FG + D + ++ EKP S+ + G+Y
Sbjct: 122 ILRRAASLEDGAVIFGYYV--RDPRPFGVVEFDSE-GRVISIEEKPSRPKSNYVVPGLYF 178
Query: 186 FTPDIFNAIQGVS-SQRKDRE 205
+ + + + S R + E
Sbjct: 179 YDNQVVEIARRIEPSDRGELE 199
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 95.5 bits (236), Expect = 7e-23
Identities = 51/292 (17%), Positives = 96/292 (32%), Gaps = 67/292 (22%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
V+ +I+ GG GTR PL+ KP PLG ++ P+S C +IY++ +
Sbjct: 11 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 68
Query: 62 EREFALYVSSISNELRIPVRYLR-------------EDKPHGSAGALYNFRDLIMEDNPS 108
++S + D G+A A+ + L E
Sbjct: 69 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVL 128
Query: 109 HIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT 168
+L D + + AHR T+ + + + A+ FG + D + ++ +
Sbjct: 129 EYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEGRIIEFA 187
Query: 169 EKPET---------------------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENL 207
EKP+ + + + G+YV + D+ + R+
Sbjct: 188 EKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL--------LRDKF 239
Query: 208 RRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTP 259
+ F + I + ++ Y +WE I T
Sbjct: 240 PGANDFG----------------SEVIPGATSLGMRVQAYLYDGYWEDIGTI 275
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 80.5 bits (197), Expect = 6e-18
Identities = 44/274 (16%), Positives = 83/274 (30%), Gaps = 65/274 (23%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFYEER-- 63
AVI+ GG GTR ++ PKP+ +GG+P++ H + + Y+
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 64 ------------------EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMED 105
V + + G L + + +D
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122
Query: 106 NPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165
D + +D H+ +G T+ +FG A +
Sbjct: 123 EA--FLFTYGDGVADLDIKATIDFHKAHGKKATLTAT----FPPGRFG---ALDIQAGQV 173
Query: 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225
++ +IN G +V P + + I + +++E
Sbjct: 174 RSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDA------------TTWE----------- 210
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTP 259
Q+ L LA + +L +E FW+ + T
Sbjct: 211 ------QEPLMTLAQQGELMAFEHPGFWQPMDTL 238
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 67.4 bits (163), Expect = 2e-13
Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 13/186 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
A+I+ G KGTR + ++PK L + G M+ H + I +
Sbjct: 4 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV 58
Query: 71 SISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDA 129
++ + + G+ A+ ++ + + + + L ++D
Sbjct: 59 EEVL--AGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDF 116
Query: 130 HRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFV---SDLINCGVYVF 186
H N+ + TIL + +G +V + + L +K T IN G YVF
Sbjct: 117 HINHKNVATILTAETDNP--FGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVF 174
Query: 187 TPDIFN 192
+
Sbjct: 175 DNERLF 180
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 67.0 bits (162), Expect = 2e-13
Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 18/189 (9%)
Query: 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREF 65
+ +V A+I+ G GTR RPL+ N PK L + +P++ + I K G +
Sbjct: 1 EIRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK---GINDIIII 55
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
Y+ + L+ + + + ++
Sbjct: 56 VGYLKEQFDYLKEKYGVRLVFNDKYA----DYNNFYSLYLVKEELANSYVIDADNYLFKN 111
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
M ++ + E + + + + I GV
Sbjct: 112 MFRNDLTRSTYFSVYREDCTNEWFLVY---------GDDYKVQDIIVDSKAGRILSGVSF 162
Query: 186 FTPDIFNAI 194
+ I
Sbjct: 163 WDAPTAEKI 171
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 59.0 bits (141), Expect = 1e-10
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
VI+ G KGTR ++PK L L G+ MV H I A + + +
Sbjct: 5 VVILAAG--KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59
Query: 71 SISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAH 130
+ + + ++ + + G+ A+ +D + + + L + DA
Sbjct: 60 KQALK-DDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAK 118
Query: 131 RNY 133
Sbjct: 119 PQG 121
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 56.6 bits (135), Expect = 9e-10
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 5/128 (3%)
Query: 8 KVVAVIMVGGPTKGTRFRPLS-LNIPKPLFPL-GGQPMVHHPISACKRIYLVGFYEEREF 65
K A++M GG +G R PLS + PKP PL G+ ++ + +
Sbjct: 2 KTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVR 59
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ L +AGA+ +++ + +L D
Sbjct: 60 RDQEAVARPYADGIRLLLEP-LGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAY 118
Query: 126 MLDAHRNY 133
Sbjct: 119 REALATML 126
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Score = 55.4 bits (132), Expect = 2e-09
Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 12/179 (6%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
K +A+I G G RF + PK +G + ++ H + +V E
Sbjct: 3 KNIALIPAAG--IGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPE 57
Query: 62 EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF 121
+ ++ + + A L E + + S
Sbjct: 58 DTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSE 117
Query: 122 PLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLIN 180
L +++ N G + V ++ G++ A D L + P+ F + L++
Sbjct: 118 ALARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVD-RSGLWQAQTPQLFQAGLLH 175
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 48.7 bits (115), Expect = 3e-07
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR 53
+ A+++ GG K + K L P G+PMV + A
Sbjct: 2 RPSAIVLAGG--KEAWAERFGV-GSKALVPYRGRPMVEWVLEALYA 44
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Score = 48.5 bits (114), Expect = 3e-07
Identities = 20/129 (15%), Positives = 30/129 (23%), Gaps = 6/129 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFAL 67
V AV+ G G R + PK +G Q ++ H + A V
Sbjct: 3 DVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPG 57
Query: 68 YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEML 127
L + D A ++ D + C L
Sbjct: 58 DSRFAQLPLANHPQITVVDGGDERADSVLAGLK-AAGDAQWVLVHDAARPCLHQDDLARL 116
Query: 128 DAHRNYGGM 136
A
Sbjct: 117 LALSETSRT 125
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Score = 47.7 bits (112), Expect = 5e-07
Identities = 14/110 (12%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYV 69
VA+++ G KG R N+PK + G+ + +P+S + + +
Sbjct: 5 VAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF 59
Query: 70 SSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
+ + + + ++ + + + + +PS++ + +
Sbjct: 60 EVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPF 109
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 47.7 bits (112), Expect = 6e-07
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIY 55
V +++ GG +G R + ++PK PL GQP+ + R+
Sbjct: 4 SVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMP 46
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIY 55
+ +++ G TRF + K LG P+ + Y
Sbjct: 2 MSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFY 43
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Score = 37.4 bits (85), Expect = 0.001
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 10/130 (7%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIP-KPLFPLGGQPMVHHPISACKRIYLVGFYEEREFA 66
+ +AVI+ +KG +P K L + G ++ H I+A
Sbjct: 4 QNIAVILARQNSKG---------LPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG 54
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEM 126
++ + + V + +A ++ + + +
Sbjct: 55 GLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAH 114
Query: 127 LDAHRNYGGM 136
+ +
Sbjct: 115 IREAFSLFDE 124
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (82), Expect = 0.003
Identities = 20/192 (10%), Positives = 44/192 (22%), Gaps = 16/192 (8%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIP-KPLFPLGGQPMVHHPISACKRI----YLVGFYEE 62
+ A+++ G +KG IP K + L G P++ + A + +
Sbjct: 3 HLAALVLARGGSKG---------IPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH 53
Query: 63 REFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDN--PSHIFLLNCDVCCS 120
E ++ +D + D
Sbjct: 54 DEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDL 113
Query: 121 FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLIN 180
+ EM+ + + + V +P + + N
Sbjct: 114 QKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYEN 173
Query: 181 CGVYVFTPDIFN 192
Y +
Sbjct: 174 GSFYFAKRHLIE 185
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Score = 35.8 bits (81), Expect = 0.004
Identities = 14/107 (13%), Positives = 25/107 (23%), Gaps = 6/107 (5%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFAL 67
+ V++ GG K R + K L L G+P+ H A
Sbjct: 3 TITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQE 56
Query: 68 YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
+ ++ G + P +
Sbjct: 57 IYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIP 103
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.96 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.95 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.95 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.92 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.89 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.66 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.63 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.6 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.56 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.53 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.5 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.48 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.45 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.39 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.37 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.33 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.32 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.31 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.04 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.04 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.95 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.89 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.8 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.78 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.78 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.74 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.71 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.65 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.65 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.64 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.63 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.62 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.59 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.57 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.52 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.36 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.34 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.33 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.29 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.29 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.26 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.25 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.22 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.22 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.21 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.12 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.08 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.08 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.0 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.92 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.8 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.62 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.51 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 85.76 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.5e-40 Score=299.96 Aligned_cols=231 Identities=19% Similarity=0.309 Sum_probs=197.9
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EE-EEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IY-LVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----ii-v~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++||||||| .||||+|+|..+||||+||+|+|||+|+|+.|.. |+ |++++....+.++++. ...+++++.
T Consensus 1 k~KavILAgG--~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~-~~~~g~~I~ 77 (292)
T d1fxoa_ 1 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQ 77 (292)
T ss_dssp CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEE
T ss_pred CcEEEEECCC--CCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcc-ccccCeEEE
Confidence 3699999999 9999999999999999999999999999999976 54 5565666678888876 456889999
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
|+.|+++.|+++|++.|.++++++ +.++++++|.+++.|+.++++.|.+.++.+++++.++. +|++||++..|. +
T Consensus 78 y~~q~~~~Gta~ai~~a~~~i~~~--~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~--~p~~yGV~~~d~-~ 152 (292)
T d1fxoa_ 78 YAVQPSPDGLAQAFLIGESFIGND--LSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL--DPERYGVVEFDQ-G 152 (292)
T ss_dssp EEECSSCCCGGGHHHHTHHHHTTS--EEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS--CGGGSEEEEECT-T
T ss_pred EccCCCCCcHHHHHHhhhhhcCCC--ceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECC--CHHHCeEEEEcC-C
Confidence 999999999999999999999764 35778888888899999999999999998999999884 678999999985 7
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
+++..+.|||..+.++++.+|+|+|++++++.+.+..++.+++.++ .|+++.+.++
T Consensus 153 ~ki~~~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~ei------------------------tD~~~~~l~~ 208 (292)
T d1fxoa_ 153 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEI------------------------TDVNRAYLER 208 (292)
T ss_dssp SCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCH------------------------HHHHHHHHHT
T ss_pred CCEeEEEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhh------------------------HHHHHHHHHc
Confidence 8999999999999999999999999999999998887665543221 6788887777
Q ss_pred ceEEEEEcc--cchhhcCCccchhhcchHHH
Q 016989 242 KQLYTYETM--DFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 242 ~~v~~~~~~--~~w~~i~t~~d~~~a~~~~l 270 (379)
.++.++.+. .+|.|+||+++|++|+++..
T Consensus 209 ~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 209 GQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp TCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 777666653 35999999999999986653
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-39 Score=293.75 Aligned_cols=229 Identities=18% Similarity=0.275 Sum_probs=192.3
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----E-EEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----I-YLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----i-iv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|+||||||| .||||+|+|..+||||+||+|+|||+|+++.|.. | +|+++.....+++++++ ..++|+++.|
T Consensus 2 MkaiIlagG--~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~-g~~~gi~I~y 78 (291)
T d1mc3a_ 2 MKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEY 78 (291)
T ss_dssp CEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEE
T ss_pred ccEEEECCc--CccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCc-hHhhCcEEEE
Confidence 799999999 9999999999999999999999999999999976 5 44555555567888876 4668999999
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
+.|+.++|+|+|+..+.++++++ +.++++++|.+++.++.++++.|.++.+++|+++.++ .+|++||++..|+ ++
T Consensus 79 ~~Q~~plGta~Ai~~a~~fi~~~--~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V--~dP~~yGVve~d~-~g 153 (291)
T d1mc3a_ 79 AEQPSPDGLAQAFIIGETFLNGE--PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFDD-NF 153 (291)
T ss_dssp EECSSCCCSTHHHHHTHHHHTTS--CEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC--SCCSSSBBCEEET-TE
T ss_pred EECCCCCchHHHHHHHHHHhCCC--CeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEEC--CCcccCCCceecc-Cc
Confidence 99999999999999999999764 2356666666679999999999998888899999998 4789999999984 78
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCc
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (379)
+|.++.|||..+.++++++|+|+|++++++.+++..++.+++-++ .|+++.+.+..
T Consensus 154 ~i~~i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EI------------------------tdl~~~~l~~~ 209 (291)
T d1mc3a_ 154 RAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEI------------------------TSINQMYLEAG 209 (291)
T ss_dssp EEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCH------------------------HHHHHHHHHTT
T ss_pred ceeEEEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceee------------------------hHHHHHHHHcC
Confidence 999999999999999999999999999999999887765533221 56777666665
Q ss_pred eEEEEEc--ccchhhcCCccchhhcchHH
Q 016989 243 QLYTYET--MDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 243 ~v~~~~~--~~~w~~i~t~~d~~~a~~~~ 269 (379)
++..+.. ..+|.|+||+++|++|+++.
T Consensus 210 ~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 210 NLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp CEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred CceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 5555444 33599999999999998765
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=3.9e-34 Score=261.89 Aligned_cols=231 Identities=17% Similarity=0.284 Sum_probs=188.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEE-EcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv-~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
.+|+||||||| .||||+|+|...||||+||+|+|||+|+++.+.. ++| +++.....+++++.+. ..+++++
T Consensus 2 ~~MkavIlagG--~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~-~~~~~~i 78 (295)
T d1lvwa_ 2 AHMKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDG-SQFGVRF 78 (295)
T ss_dssp CSCEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTSEE
T ss_pred CCcEEEEECCC--CcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhccc-hhcCCEE
Confidence 36899999999 9999999999999999999999999999999876 544 4545555677777653 4677888
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
.++.++.+.||++|++.|.++++++ +.++++++|++++.++..++..|.+.+.++++++.+.. ++++||++..+.
T Consensus 79 ~~v~e~~~~gta~Al~~a~~~l~~~--~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~--~~~~yG~i~~~~- 153 (295)
T d1lvwa_ 79 SYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR--DPRPFGVVEFDS- 153 (295)
T ss_dssp EEEECSSCCCGGGHHHHTHHHHTTS--CEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS--CCTTSEEEEECT-
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC--CEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC--CCccccEEEECC-
Confidence 8998999999999999999999764 45778888888899999999999998888999888874 678999999874
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+++|.+|.|||..+.++++++|+|+|++++|..+.+...+...+.+ . .++++.++.
T Consensus 154 ~~~v~~~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~--------------------~----~~~~~~~~~ 209 (295)
T d1lvwa_ 154 EGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELE--------------------I----TSVNEEYLR 209 (295)
T ss_dssp TSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCC--------------------H----HHHHHHHHH
T ss_pred CCcEEEEeecccCcccceeecceEEECHHHHHHHHhcCCCcCCCee--------------------c----cchHHHHHH
Confidence 7899999999998888999999999999999888765443321111 0 455555543
Q ss_pred C--ceEEEEEcccchhhcCCccchhhcchHH
Q 016989 241 K--KQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 241 ~--~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
. ..++.+..+.+|.|+||+++|.+++..+
T Consensus 210 ~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 210 MGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp TTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred hCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 3 4566677778999999999999997654
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=3.9e-33 Score=256.81 Aligned_cols=239 Identities=21% Similarity=0.343 Sum_probs=181.0
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc-c--
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISN-E-- 75 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~-~-- 75 (379)
|.+++.||||||| .||||+|+|.++||||+||+|+ |||+|+++.|.+ |+|++.+..+.+.+|+.+... .
T Consensus 8 ~~~~~~AIILAaG--~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~ 85 (307)
T d1yp2a2 8 ASRSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 85 (307)
T ss_dssp HHHHEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC----
T ss_pred cCCceEEEEECCC--CcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccc
Confidence 4457899999999 9999999999999999999885 999999999976 666666555567777765321 1
Q ss_pred ----CCccEEEecC------CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeC
Q 016989 76 ----LRIPVRYLRE------DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS 145 (379)
Q Consensus 76 ----~~~~i~~~~~------~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~ 145 (379)
.+....+..+ ....|++++++.+...+.+..+++|++++||++++.|+..+++.|+.+++++++++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 165 (307)
T d1yp2a2 86 GYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMD 165 (307)
T ss_dssp ----CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEEC
T ss_pred cccccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecc
Confidence 1222333222 234699999999999998766678999999999999999999999999999988888776
Q ss_pred CCCCCceeEEEEeCCCCcEEEeeecCCCc---------------------ccceeeeeEEEeCHhhHHHhhccccccccc
Q 016989 146 AESASQFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIFNAIQGVSSQRKDR 204 (379)
Q Consensus 146 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~ 204 (379)
...+..||++.+++ +++|..|.|||... ...+.++|+|+|++++|..+.+....
T Consensus 166 ~~~~~~~gvv~~d~-~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~---- 240 (307)
T d1yp2a2 166 EKRATAFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP---- 240 (307)
T ss_dssp HHHHTTSEEEEECT-TSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCT----
T ss_pred cccccccceEEECC-CCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccc----
Confidence 56678899999985 89999999998532 24578899999999988665432110
Q ss_pred hhhhhcchhhhhhhhccccccccccccccccccccC-CceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 205 ENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG-KKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~-~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
...++. .++++.+++ +.++.+|+++|+|.|+|||++|++|+..++.
T Consensus 241 ------------------~~~~~~---~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~ 287 (307)
T d1yp2a2 241 ------------------GANDFG---SEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 287 (307)
T ss_dssp ------------------TCCCTT---TTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGC
T ss_pred ------------------cccchH---HHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhc
Confidence 112222 678877654 5789999999999999999999999865543
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=1.4e-28 Score=219.91 Aligned_cols=224 Identities=22% Similarity=0.394 Sum_probs=166.4
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhccc-------
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE------- 75 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~------- 75 (379)
..+||||||| .||||+|+|.+.||||+||+|+|||+|+|+.|.+ |+|++.+..+.+.+|+......
T Consensus 2 ~~kAiILAAG--~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~ 79 (259)
T d1tzfa_ 2 ASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CceEEEECCC--ccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence 4689999999 9999999999999999999999999999999986 6666555556688888642110
Q ss_pred -------------CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEE
Q 016989 76 -------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 76 -------------~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
....+.++.+....++.+++..+.+.+..+ +.|+++++|.+++.++..+++.|.......+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (259)
T d1tzfa_ 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT 157 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTS--SCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred hccccchhhhccccccceeEEeccccccccchhhhhhhhccCC--CceEEeccccccccchhhhhhhhcccccceeeccc
Confidence 012244555667889999999988877654 46999999999999999999998887776665554
Q ss_pred EeCCCCCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccc
Q 016989 143 KVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (379)
Q Consensus 143 ~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
. ...+++.+... ..++..+.+.+. ....+.++|+|++++++++.+.....
T Consensus 158 ~----~~~~~~~~~~~--~~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~~~~----------------------- 207 (259)
T d1tzfa_ 158 F----PPGRFGALDIQ--AGQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDAT----------------------- 207 (259)
T ss_dssp C----CCCCSEEEEEE--TTEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCSTTC-----------------------
T ss_pred c----ccccCCceecc--cceEEeeeeccc-cceeeecceeccccchhhhhcccCcC-----------------------
Confidence 3 34566766654 467776666554 35678899999999999887764211
Q ss_pred cccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 223 LTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 223 ~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
.+ ..++++.|+++.++++|.++|+|.++||++||..+++++..
T Consensus 208 ---~~---~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~ 250 (259)
T d1tzfa_ 208 ---TW---EQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp ---CT---TTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred ---cc---HHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHc
Confidence 11 26778888888899999999999999999999998887764
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=2.3e-28 Score=219.80 Aligned_cols=237 Identities=18% Similarity=0.242 Sum_probs=154.6
Q ss_pred CceEEEEEecCCCCCCccCCC-CCCCCCCCcee-CCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPL-SLNIPKPLFPL-GGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~l-t~~~pK~llpi-~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
|++.||||||| .||||+|| |..+||||+|| +|+|||+|+++++.. +++++++..+.+.++. +.
T Consensus 1 MKi~aVILAGG--~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~-------~~ 71 (268)
T d2cu2a2 1 MKTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPY-------AD 71 (268)
T ss_dssp CCEEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG-------CS
T ss_pred CCceEEEecCC--CcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh-------cc
Confidence 34679999999 99999999 67889999997 579999999998765 6666665554333222 22
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCCh--HHHHHH---HHhcCCceEEEEEEeCCCCCCcee
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL--PEMLDA---HRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl--~~~l~~---~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
.+.++.++...||+.++..+...+....++.++|++||+++..++ ...+.. +.+++..+++.+.+. ..++.||
T Consensus 72 ~~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~yG 149 (268)
T d2cu2a2 72 GIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPT--RPETEYG 149 (268)
T ss_dssp SSEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCS--SCCSSSC
T ss_pred ccceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecccc--ccccccc
Confidence 334455677889999998877665433346899999999996653 444443 234455555555554 4678999
Q ss_pred EEEEeCCCC---cEEEeeecCCCc-------ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccc
Q 016989 154 ELVADPDTN---ELLHYTEKPETF-------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (379)
Q Consensus 154 ~v~~d~~~~---~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
++..+++.+ +|..|.|||... ...++|+|+|+|++++| +.+++..+... +.+....+.
T Consensus 150 ~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~-----------~~~~~~~~~ 218 (268)
T d2cu2a2 150 YIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHH-----------EALERLLAG 218 (268)
T ss_dssp EEEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHH-----------HHHHHHHTT
T ss_pred eEEeccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHH-----------HHHHHHHhc
Confidence 998874222 799999999732 24689999999998875 44443332110 011110000
Q ss_pred c--ccccccccccccc--cccCCceEEEEEcccchhhcCCccchhhc
Q 016989 223 L--TTDFVRLDQDILS--PLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 223 ~--~~~~~~l~~d~l~--~l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
. ..-|..+...-+. -|.+..++.+++.+++|.|+||++++.+.
T Consensus 219 ~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~ 265 (268)
T d2cu2a2 219 ASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERV 265 (268)
T ss_dssp CCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHH
T ss_pred chHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHH
Confidence 0 0000001011111 12345689999999999999999988754
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=1.3e-27 Score=209.96 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=155.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
|+|+||||||| .||||+|+|...||||+||+|+|||+|+++.|.+ |+|++++..+.++.+.. .+++++.
T Consensus 2 m~mkaiIlaaG--~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~----~~~i~i~ 75 (229)
T d1jyka_ 2 IRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKE----KYGVRLV 75 (229)
T ss_dssp CCCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHH----HHCCEEE
T ss_pred CceeEEEECCC--CcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhhhhh----hcccccc
Confidence 56889999999 9999999999999999999999999999999975 55555544444644332 3567888
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
+..+..+.|++++++.+.+.+++ .+++.++|.+++..+.+.+. ...++.... .++..++.+..++ +
T Consensus 76 ~~~~~~~~Gt~~sl~~a~~~l~~----~~ii~~dd~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~-~ 141 (229)
T d1jyka_ 76 FNDKYADYNNFYSLYLVKEELAN----SYVIDADNYLFKNMFRNDLT-------RSTYFSVYR--EDCTNEWFLVYGD-D 141 (229)
T ss_dssp ECTTTTTSCTHHHHHTTGGGCTT----EEEEETTEEESSCCCCSCCC-------SEEEEECEE--SSCSSCCEEEECT-T
T ss_pred ccccccccccccccccchhhhcc----cccccccccccccchhhhhh-------ccccceeee--eeccccceeEEcc-C
Confidence 88788889999999999888864 37776666555555443221 122333233 2456777777774 7
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|..+.++|. .++..+|+|+|++...+.+.+....... . ....+++ .++++..+.++
T Consensus 142 ~~i~~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~--~~~~~~~~l~~ 199 (229)
T d1jyka_ 142 YKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYV--------------S---GEFVDLY--WDNMVKDNIKE 199 (229)
T ss_dssp CBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHT--------------T---TCCTTCC--TTHHHHTTGGG
T ss_pred CceeeEEEecc---cceEEEEEEEEcHHHHHHHHHHHHHhhc--------------c---cccchhH--HHHHHHHHHHh
Confidence 89999998864 4668899999998776555432211100 0 0011111 14556666667
Q ss_pred ceEEEEEccc-chhhcCCccchhhcchHH
Q 016989 242 KQLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 242 ~~v~~~~~~~-~w~~i~t~~d~~~a~~~~ 269 (379)
..++++...+ .|.+++||+||.+|++++
T Consensus 200 ~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 200 LDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred CCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 7888888776 599999999999987654
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.92 E-value=2.9e-24 Score=190.43 Aligned_cols=227 Identities=18% Similarity=0.291 Sum_probs=164.7
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
.||||||| .||||+| .+||||+||+|+|||+|+++.|.+ ++|++.+....+..+.. ..+.+..
T Consensus 3 ~AIIlAaG--~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~-------~~~~~~~ 70 (250)
T d1g97a2 3 FAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA-------GQTEFVT 70 (250)
T ss_dssp EEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTT-------TTSEEEE
T ss_pred EEEEECCC--CCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhcc-------ccccccc
Confidence 69999999 9999999 689999999999999999999986 55554444443444432 2333445
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.....|+.+++..+...+.....+.+++..+|.++ +.+++++++.|...+...++...+.. .+..++.+..+. .+.
T Consensus 71 ~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~ 147 (250)
T d1g97a2 71 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD--NPFGYGRIVRND-NAE 147 (250)
T ss_dssp CSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS--CCTTSCEEEECT-TCC
T ss_pred cccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceec--ccCCCceEEEee-ceE
Confidence 56778999999999888875433345555555555 67799999999998888888877763 567788777764 678
Q ss_pred EEEeeecCCC----cccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 164 LLHYTEKPET----FVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 164 v~~~~ekp~~----~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
+..+.+++.. ...++.++|+|+|++..+ +.+......+... ..+. .++++.+
T Consensus 148 v~~~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~--------------------~~~~---~~~~~~~ 204 (250)
T d1g97a2 148 VLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQG--------------------EYYI---TDVIGIF 204 (250)
T ss_dssp EEEEECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTC--------------------SCCG---GGHHHHH
T ss_pred EEEeeccccccccccccceeeeeeeecchHHHHHHHHHhccCcchh--------------------hHHH---hHHHHHH
Confidence 8888887642 346789999999997654 5554433222111 1121 5666666
Q ss_pred cC-CceEEEEEcccchhh--cCCccchhhcchHHHHhhh
Q 016989 239 AG-KKQLYTYETMDFWEQ--IKTPGMSLKCSGLYLAQFR 274 (379)
Q Consensus 239 ~~-~~~v~~~~~~~~w~~--i~t~~d~~~a~~~~l~~~~ 274 (379)
++ +.+|.++.++++|.+ ++|++|+..|.+++..+..
T Consensus 205 ~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~~~ 243 (250)
T d1g97a2 205 RETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRIN 243 (250)
T ss_dssp HHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHHHH
Confidence 55 468999999999976 6899999999888766543
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.7e-22 Score=178.84 Aligned_cols=223 Identities=19% Similarity=0.273 Sum_probs=153.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
.|++|||||| .||||+| .+||||+||+|+|||+|+|+.|.. |+|++++..+.+..+.. +....+
T Consensus 2 ~MkvIILAAG--~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~------~~~~~~ 70 (248)
T d2oi6a2 2 AMSVVILAAG--KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALK------DDNLNW 70 (248)
T ss_dssp CEEEEEECCS--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCC------CTTEEE
T ss_pred CceEEEECCC--CCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeecc------cccccc
Confidence 5899999999 9999999 789999999999999999999987 66665555544544432 234455
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecC-C-hHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-P-LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~-d-l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
..+..+.|+++++..+.+.+..+ ..+++..+|.++.. . +..+.. .......+++..+. .++..++.+..+
T Consensus 71 ~~~~~~~g~~~~~~~~~~~i~~~--~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 142 (248)
T d2oi6a2 71 VLQAEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETLQRLRD--AKPQGGIGLLTVKL--DDPTGYGRITRE-- 142 (248)
T ss_dssp EECSSCCCHHHHHHHHGGGSCTT--SEEEEEETTCTTCCHHHHHHHHH--HCCTTSEEEEEEEC--SCCTTSCEEEEE--
T ss_pred cccccCcccHHHHHhhhhhhccc--cceeeecCccccccchhHHHHHH--HhhccccceeEEEe--cCCccccccccc--
Confidence 56677899999999998888654 36888888888732 2 222222 22333344554444 467778877776
Q ss_pred CCcEEEeeec----CCCcccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccccccccccccccc
Q 016989 161 TNELLHYTEK----PETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (379)
Q Consensus 161 ~~~v~~~~ek----p~~~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (379)
++....+.++ +......+..+|.|.|+.+.+ +.+..........++ + + ++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~---------------------~-l-td~~ 199 (248)
T d2oi6a2 143 NGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEY---------------------Y-I-TDII 199 (248)
T ss_dssp TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC---------------------C-T-THHH
T ss_pred cCccceeeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhh---------------------h-h-hHHH
Confidence 4555555442 223456678999999997654 666544332222221 1 1 5677
Q ss_pred ccccC-CceEEEEEcccchhh--cCCccchhhcchHHHHh
Q 016989 236 SPLAG-KKQLYTYETMDFWEQ--IKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 236 ~~l~~-~~~v~~~~~~~~w~~--i~t~~d~~~a~~~~l~~ 272 (379)
+.+++ +.+|.++..+++|.. |+||+|+..|.+++..+
T Consensus 200 ~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~ 239 (248)
T d2oi6a2 200 ALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSE 239 (248)
T ss_dssp HHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHH
Confidence 77654 578999998887753 78999999998877554
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.66 E-value=1.2e-15 Score=132.76 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=82.6
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
|++++.+|||||| .|+||+. +.||+|++++|+|||+|+++.+.+ |+|+++.... +++......++.
T Consensus 1 M~k~i~~IIlAaG--~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~---~~~~~~~~~~~~ 72 (226)
T d1w77a1 1 MEKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR---DIFEEYEESIDV 72 (226)
T ss_dssp CTTCEEEEEECCC------------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGT---HHHHTTTTSCSS
T ss_pred CCCceEEEEeCCc--cCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhh---hhhhcccccccc
Confidence 5677899999999 9999987 889999999999999999999864 6777664332 233333334455
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCC
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG 135 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~ 135 (379)
.+.++.. ...+.++++.++..+... .+.+++++||.++ ...+..+++.+...+.
T Consensus 73 ~~~~~~g--g~~r~~sv~~~l~~~~~~-~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~ 128 (226)
T d1w77a1 73 DLRFAIP--GKERQDSVYSGLQEIDVN-SELVCIHDSARPLVNTEDVEKVLKDGSAVGA 128 (226)
T ss_dssp EEEEECC--CSSHHHHHHHHHHTSCTT-CSEEEEEETTCTTCCHHHHHHHHHHHHHHSE
T ss_pred ccccccc--cchhhhhhhhhHhhhccc-cccceecccccccccHHHhhhhhhhhhccCc
Confidence 5655532 234678899988877643 4689999999999 4567888887776654
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=7.5e-15 Score=127.08 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=121.2
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
||||||| .|+||+. +.||+|++++|+|||+|+|+.+.+ |+|+++.... +++... ......+.++.
T Consensus 6 AIILAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~-~~~~~~~~~~~ 76 (221)
T d1vpaa_ 6 AILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKR-VFHEKVLGIVE 76 (221)
T ss_dssp EEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTT-CCCTTEEEEEE
T ss_pred EEEccCc--CcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhh---hHHHhh-hcccccccccc
Confidence 8999999 9999986 789999999999999999999854 6666654332 222221 11123344443
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
. ..+...++..+...+....++.+++++||.++ ...+..+++.+.+... .+...+.. . ..+..+ ++
T Consensus 77 ~--~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~-----d-~~~~~~--~~ 144 (221)
T d1vpaa_ 77 G--GDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNS-----D-ALVRVE--ND 144 (221)
T ss_dssp C--CSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECC-----S-EEEEEE--TT
T ss_pred c--cccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhccccc--cccccccc-----c-eeEeec--Cc
Confidence 2 23456677777777665556789999999999 4557888887766542 23333321 1 222333 23
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc-cCC
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL-AGK 241 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l-~~~ 241 (379)
+...+.+ ...+...+-+.|+.+.+....+.. .++ .|....+ ..+
T Consensus 145 ~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~----tD~~~l~~~~g 189 (221)
T d1vpaa_ 145 RIEYIPR-----KGVYRILTPQAFSYEILKKAHENG--------------------------GEW----ADDTEPVQKLG 189 (221)
T ss_dssp EEEEECC-----TTEEEEEEEEEEEHHHHHHHHTTC--------------------------CCC----SSSHHHHHTTT
T ss_pred cceecch-----HHHHHhhhhhhhhHHHHHHHHHhC--------------------------CCC----ccHHHHHHHcC
Confidence 3332221 133455666777766554332110 011 2222222 234
Q ss_pred ceEEEEEcccchhhcCCccchhhcchHH
Q 016989 242 KQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
.++..+..+.....|+||+|+..|..++
T Consensus 190 ~~v~~i~g~~~n~kI~t~eDl~~Ae~ll 217 (221)
T d1vpaa_ 190 VKIALVEGDPLCFKVTFKEDLELARIIA 217 (221)
T ss_dssp CCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred CceEEEecChhhcCCCCHHHHHHHHHHH
Confidence 5676666544445789999998886554
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.3e-15 Score=130.67 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=84.8
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
|++.||||||| .||||+. ++||+|+|++|+|||+|+++.+.+ |+|+++.....+..+... ....+
T Consensus 2 M~i~AIILAaG--~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~----~~~~v 72 (225)
T d1i52a_ 2 LDVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLA----NHPQI 72 (225)
T ss_dssp CCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGG----GCTTE
T ss_pred CCEEEEEeCCC--cceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhc----ccccc
Confidence 57899999999 9999986 899999999999999999998854 666666443322222211 11234
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
.+... ..+..++++.+...+.+. +.++++++|.++ ..++.++++...... ...+...+.
T Consensus 73 ~~~~~--~~~~~~sv~~~~~~~~~~--~~vl~~~~~~p~i~~~~~~~~~~~~~~~~-~~~v~~~~~ 133 (225)
T d1i52a_ 73 TVVDG--GDERADSVLAGLKAAGDA--QWVLVHDAARPCLHQDDLARLLALSETSR-TGGILAAPV 133 (225)
T ss_dssp EEEEC--CSSHHHHHHHHHHTSTTC--SEEEECCTTCTTCCHHHHHHHHGGGGTCS-SCEEEEEEC
T ss_pred ccccC--CcchhHHHHhhhcccCcc--ceeeeeccCCCCCCHHHHHHHHhhhhhcc-cccccccce
Confidence 33332 235678999988888653 578899999988 344666666555443 344444443
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.56 E-value=1.1e-14 Score=126.56 Aligned_cols=144 Identities=21% Similarity=0.313 Sum_probs=83.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
++..||||||| .|+||+. .+||+|++++|+|||+|+++.+.+ ++|+++..+. +.+++... +....
T Consensus 2 ~K~iAIIlAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~-~~~~~~~~---~~~~~ 72 (226)
T d1vgwa_ 2 RKNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT-FADKVQTA---FPQVR 72 (226)
T ss_dssp CCEEEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCS-THHHHHHH---CTTSE
T ss_pred CceEEEEeCCC--CcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhh-hhhhhccc---cccee
Confidence 45679999999 9999985 789999999999999999999864 6677765543 44444432 11222
Q ss_pred EEecCCCCCChHHHHHHHHHhhc----cCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeE
Q 016989 81 RYLREDKPHGSAGALYNFRDLIM----EDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~----~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 154 (379)
.+. .......+++..++..+. ...++.+++++||.++ ...+..+++.+...+... +...+.. ...
T Consensus 73 ~~~--~g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~-i~~~~~~------~~~ 143 (226)
T d1vgwa_ 73 VWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGG-ILAVPVA------DTL 143 (226)
T ss_dssp EEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCE-EEEEECC------SCE
T ss_pred ecc--ccccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccce-eeccccc------ccc
Confidence 222 222334555665554442 2234679999999988 455888998887766644 3333331 122
Q ss_pred EEEeCCCCcEEEeeec
Q 016989 155 LVADPDTNELLHYTEK 170 (379)
Q Consensus 155 v~~d~~~~~v~~~~ek 170 (379)
...+ ++.+....++
T Consensus 144 ~~~~--~~~i~~~~~r 157 (226)
T d1vgwa_ 144 KRAE--SGQISATVDR 157 (226)
T ss_dssp EEES--SSBEEEEECC
T ss_pred eecc--CCeEEeccch
Confidence 2332 5666665554
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.53 E-value=1.5e-13 Score=120.49 Aligned_cols=223 Identities=17% Similarity=0.231 Sum_probs=141.7
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+..+||+|.| .++|+ | .|+|++++|+|||+|+++.+.+ |+|++.... +.+... .+|.++.
T Consensus 2 k~i~iIpAR~--~SkRl-~-----~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~--i~~~~~----~~~~~~~ 67 (245)
T d1h7ea_ 2 KAVIVIPARY--GSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPR--VEQAVQ----AFGGKAI 67 (245)
T ss_dssp CEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHH--HHHHHH----HTTCEEE
T ss_pred CEEEEEcCCC--CCcCC-C-----CccccccCCccHHHHHHHHHHhCCCCCeEEEeccccc--chhhhh----hcCceEE
Confidence 4679999988 67775 3 4999999999999999999875 666665432 333333 3456665
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCC--CCCC-ceeEEE
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSA--ESAS-QFGELV 156 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~--~~~~-~~g~v~ 156 (379)
..... ..++.+.+..+...++. |.++.+.||.++ ...+..+++.+................ .... ......
T Consensus 68 ~~~~~-~~~~~~~~~~~~~~~~~---d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~ 143 (245)
T d1h7ea_ 68 MTRND-HESGTDRLVEVMHKVEA---DIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVV 143 (245)
T ss_dssp ECCSC-CSSHHHHHHHHHHHSCC---SEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEE
T ss_pred EecCc-cccccHHHHHHHHhcCC---CEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeec
Confidence 54433 34555667777777754 478889999999 345788888877655544333333211 1111 112222
Q ss_pred EeCCCCcEEEeeecCC------CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccc
Q 016989 157 ADPDTNELLHYTEKPE------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL 230 (379)
Q Consensus 157 ~d~~~~~v~~~~ekp~------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (379)
.. ..+....+...+. .....+...|+|.|+++.++.+....++.....+ .
T Consensus 144 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e----------------------~- 199 (245)
T d1h7ea_ 144 VN-TRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAE----------------------S- 199 (245)
T ss_dssp EC-TTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHH----------------------T-
T ss_pred cc-hhhhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhhhhh----------------------h-
Confidence 22 2455666655432 2234567889999999998877654332211000 0
Q ss_pred cccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhh
Q 016989 231 DQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQF 273 (379)
Q Consensus 231 ~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~ 273 (379)
-+.++.+..+.++..+..++.|.+|||++||..|..++..+.
T Consensus 200 -ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~~ 241 (245)
T d1h7ea_ 200 -LEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL 241 (245)
T ss_dssp -CTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhhh
Confidence 123344446778999998888899999999999977765543
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.50 E-value=2.6e-13 Score=118.98 Aligned_cols=219 Identities=16% Similarity=0.119 Sum_probs=138.9
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+.|||+|.| -++|+ | .|+|.+|+|+|||+|+++.+.+ |+|++... .+.++.. .+|.++.+.
T Consensus 2 ~i~iIpAR~--gSkri-p-----~KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~~--~i~~~~~----~~g~~v~~~ 67 (246)
T d1vh1a_ 2 FVVIIPARY--ASTRL-P-----GKPLVDINGKPMIVHVLERARESGAERIIVATDHE--DVARAVE----AAGGEVCMT 67 (246)
T ss_dssp CEEEEECCC--CCC---C-----CTTTCEETTEEHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHH----HTTCEEEEC
T ss_pred EEEEEecCC--CCcCC-C-----CchhhhcCCccHHHHHHHHHHHcCCCcEEEEecCc--cccchhh----cccccceee
Confidence 579999999 55555 4 4999999999999999999976 67766533 3555554 356777777
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCC---CCCceeEEEEe
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAE---SASQFGELVAD 158 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~---~~~~~g~v~~d 158 (379)
......++..... +.........+.++.+.||.++ ..++..+++.+.....+....+.+.... .......+..+
T Consensus 68 ~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~ 146 (246)
T d1vh1a_ 68 RADHQSGTERLAE-VVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLD 146 (246)
T ss_dssp C-----CHHHHHH-HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEEC
T ss_pred cccccccchHHHH-HHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeec
Confidence 6666556654444 4443333334578999999998 5678888998888777766665554311 11112223444
Q ss_pred CCCCcEEEeeecCC-------------CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccc
Q 016989 159 PDTNELLHYTEKPE-------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (379)
Q Consensus 159 ~~~~~v~~~~ekp~-------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
. ++++..+.+.+. .....+...|+|+|+++.|.......++.....+
T Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e------------------- 206 (246)
T d1vh1a_ 147 A-EGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIE------------------- 206 (246)
T ss_dssp T-TSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHH-------------------
T ss_pred c-cCcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHH-------------------
Confidence 3 678877765421 1234566889999999988777654433211111
Q ss_pred ccccccccccccccCCceEEEEEccc-chhhcCCccchhhcch
Q 016989 226 DFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSG 267 (379)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~ 267 (379)
. -+.++.+-.+.++..+.... ...+|||++|+..|.+
T Consensus 207 ---~--le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k 244 (246)
T d1vh1a_ 207 ---M--LEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA 244 (246)
T ss_dssp ---T--CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHH
T ss_pred ---h--HHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHh
Confidence 0 23344444567888888765 3579999999988754
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.48 E-value=3.7e-13 Score=118.56 Aligned_cols=222 Identities=13% Similarity=0.136 Sum_probs=142.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+.|||||.| -++|+ | .|+|.+++|+|||+|+++.+.+ |+|++...+ +.+... .+|.++.+.
T Consensus 2 ~~~iIpAR~--gSkRl-p-----~Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~~~--i~~~~~----~~~~~~~~~ 67 (255)
T d1vica_ 2 FTVIIPARF--ASSRL-P-----GKPLADIKGKPMIQHVFEKALQSGASRVIIATDNEN--VADVAK----SFGAEVCMT 67 (255)
T ss_dssp CEEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHH--HHHHHH----HTTCEEEEC
T ss_pred EEEEEecCC--CCCCC-C-----CchhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCCcc--cchhhh----hhcccccee
Confidence 579999999 55565 4 4999999999999999999876 777765433 444333 356777777
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCC---CCCCceeEEEEe
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSA---ESASQFGELVAD 158 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~---~~~~~~g~v~~d 158 (379)
......|+..+...+...... ..+.++.+.||.++ ..++..+++.+.......+..+..... .....+.....+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 146 (255)
T d1vica_ 68 SVNHNSGTERLAEVVEKLAIP-DNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTD 146 (255)
T ss_dssp CCSSCCHHHHHHHHHHHTTCC-TTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEEC
T ss_pred eeccCCcchhhHHHHHHhhcc-CCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeec
Confidence 666665665554444443332 34578899999999 456888888888777766666555421 112223333444
Q ss_pred CCCCcEEEeeecCC-----------------CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcc
Q 016989 159 PDTNELLHYTEKPE-----------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATR 221 (379)
Q Consensus 159 ~~~~~v~~~~ekp~-----------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (379)
+++++..+.+.+. .........|+|+|++..+..+....++.....+
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le~~e--------------- 210 (255)
T d1vica_ 147 -KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLE--------------- 210 (255)
T ss_dssp -TTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHH---------------
T ss_pred -cCCcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhHHHH---------------
Confidence 3677777765432 1234456789999999988776544322110000
Q ss_pred ccccccccccccccccccCCceEEEEEccc-chhhcCCccchhhcchHHH
Q 016989 222 NLTTDFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 222 ~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~~l 270 (379)
+ -+.+..+..+.++..+..+. .+.+|||++|+..|..++-
T Consensus 211 -------~--le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 211 -------K--LEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp -------T--CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred -------h--HHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 0 12223334566788777654 4779999999999976553
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.45 E-value=3.6e-13 Score=116.21 Aligned_cols=171 Identities=13% Similarity=0.064 Sum_probs=113.4
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
|+++..|||+|+| .++|+ | .|+|++++|+|||+|+++.+.+ |+|++.. + .+.+.... ++.
T Consensus 1 m~~~~iaiIpar~--~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~-~-~i~~i~~~----~~~ 66 (225)
T d1eyra_ 1 MEKQNIAVILARQ--NSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG-G-LIAEEAKN----FGV 66 (225)
T ss_dssp CCCEEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESC-H-HHHHHHHH----TTC
T ss_pred CCCCEEEEEccCC--CCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEeecc-c-hhhhhhhh----hcc
Confidence 5666789999999 67777 7 6999999999999999999986 5555543 2 25554443 345
Q ss_pred cEEEecC---CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCcee
Q 016989 79 PVRYLRE---DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 79 ~i~~~~~---~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
.+..... ....++...++.+.+.+... ++.++.++||.|+ ..++.++++.+...+.+..+.+.... ....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~--~~~~~~ 143 (225)
T d1eyra_ 67 EVVLRPAELASDTASSISGVIHALETIGSN-SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPME--HHPLKT 143 (225)
T ss_dssp EEEECCHHHHSTTCCHHHHHHHHHHHHTCC-SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECS--SCTTSC
T ss_pred eeeeeccccccccccchhhccccccccccc-cceEEEeeccccccccccccccceeeccccccccceeeccc--cccccc
Confidence 5533321 23445667777777776543 5689999999999 56799999988877777666655542 223333
Q ss_pred EEEEeCCCCcEEEeeecC-------CCcccceeeeeEEEeCHhhHHHh
Q 016989 154 ELVADPDTNELLHYTEKP-------ETFVSDLINCGVYVFTPDIFNAI 194 (379)
Q Consensus 154 ~v~~d~~~~~v~~~~ekp-------~~~~~~~~~~Giy~~~~~~l~~l 194 (379)
.+..+ ++....+.... ........+.++|+++++.+...
T Consensus 144 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~~ 189 (225)
T d1eyra_ 144 LLQIN--NGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIAN 189 (225)
T ss_dssp EEECS--SSCEEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHHH
T ss_pred ccccc--cccccccccccccccccccCcceeeecceeEEeeHHHHHHc
Confidence 33333 45555443321 12223456788999998877654
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=5.4e-13 Score=94.62 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 366 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~ 366 (379)
....|.+++.||+++.|+++| .++ ++.||+||.||++|.|.+ |.|+++|.|+++|.|++|+|+++
T Consensus 7 ~~~~I~g~v~IG~~~~I~~~~----~i~g~~~IG~~v~Ig~~~~i~~----------~~Ig~~~~I~~~s~i~~~~Ig~~ 72 (78)
T d1fxja1 7 ARFDLRGTLTHGRDVEIDTNV----IIEGNVTLGHRVKIGTGCVIKN----------SVIGDDCEISPYTVVEDANLAAA 72 (78)
T ss_dssp GGEEEEEEEEECSSCEECTTE----EEEEEEEECTTCEECTTCEEES----------CEECTTCEECTTCEEESEEECTT
T ss_pred CeEEEeccEEECCCCEECCcc----EEeCCcEECCCCEECCCeEEec----------CEECCCCEEcCCcEEECCEECCC
Confidence 345688899999999999765 576 899999999999999987 99999999999999999999999
Q ss_pred ceecc
Q 016989 367 KTLNV 371 (379)
Q Consensus 367 ~~i~~ 371 (379)
+.||.
T Consensus 73 ~~IGP 77 (78)
T d1fxja1 73 CTIGP 77 (78)
T ss_dssp CEESC
T ss_pred CEECc
Confidence 99985
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=1.1e-13 Score=120.43 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=83.1
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
|+..||||||| .|+||++++. .||+|+||+|+|||+|+++.+.. ++|++..... . ....
T Consensus 1 M~~~avIlA~G--~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~----------~---~~~~ 64 (231)
T d2dpwa1 1 MRPSAIVLAGG--KEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV----------P---APAL 64 (231)
T ss_dssp CCCEEEEECCC--BCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCS----------S---CCSE
T ss_pred CCceEEEECCC--CCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeecccc----------c---eeee
Confidence 45799999999 9999998873 47999999999999999999986 5555443221 0 1111
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
......|..+++..+++.+.+ .+++++||.++ ...++.+++.+.+ .+..+.+.+.
T Consensus 65 --~~~~~~~~~~~v~~al~~~~~----~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~ 121 (231)
T d2dpwa1 65 --TLPDRGGLLENLEQALEHVEG----RVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIVPK 121 (231)
T ss_dssp --EECCCSSHHHHHHHHHHTCCS----EEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEEEH
T ss_pred --ecccchHHHHHHHHHHHhhcC----ceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEEec
Confidence 123456899999999888753 69999999988 4568888886543 3455555443
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.4e-12 Score=107.90 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=74.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
.++.||||||| +|+||+. .||+|++++|+|||+|+++.+.. ++|++....+. . ...+..+..
T Consensus 2 ~~i~~iILAgG--~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~~~~ivv~~~~~~~~----~----~~~~~~v~~ 67 (188)
T d1e5ka_ 2 TTITGVVLAGG--KARRMGG----VDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEI----Y----QASGLKVIE 67 (188)
T ss_dssp CSEEEEEECCC--CCSSSCS----SCGGGSEETTEEHHHHHHHHHHHHCSCEEEECSSSHHH----H----HTTSCCEEC
T ss_pred CceeEEEEcCC--CCcCCCC----CCcccCEECCEehhHHHHhhhcccccccccccCccHHh----h----hhcCCCccc
Confidence 45899999999 9999974 38999999999999999999876 66666654431 1 122344443
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCC-hHHHHH
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLD 128 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~d-l~~~l~ 128 (379)
.......+...++..+...... +.+++++||.++ +.+ ++.+++
T Consensus 68 d~~~~~~~~~~g~~~~~~~~~~---~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 68 DSLADYPGPLAGMLSVMQQEAG---EWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp CCTTCCCSHHHHHHHHHHHCCS---SEEEEEETTCTTCCTTHHHHHHH
T ss_pred cccccccchhHHHHHHHHhccc---ceEEEeccCCCCCCHHHHHHHHH
Confidence 3333445667777777665443 479999999999 555 455554
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=7.5e-12 Score=108.06 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=86.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
+++.|||+|+| .++|+ | .|+|++++|+|||+|+++.+.+ |+|++... .+.+.... ++..+
T Consensus 2 ~ki~aiIpaR~--~S~Rl-p-----~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~--~i~~~~~~----~~~~~ 67 (228)
T d1qwja_ 2 PHLAALVLARG--GSKGI-P-----LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD--EIENVAKQ----FGAQV 67 (228)
T ss_dssp CCEEEEEECCS--CCSSS-S-----CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH--HHHHHHHH----TTCEE
T ss_pred CCEEEEeccCC--CCCCC-C-----CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecchh--hhhhhhhh----cCccc
Confidence 56899999999 88888 6 6999999999999999999976 66665432 24444432 45555
Q ss_pred EEecC---CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 81 RYLRE---DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 81 ~~~~~---~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
..... .......+.+..+.+.... .+.++++.+|.|+ ..+++++++.+...+.+..+.+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~ 134 (228)
T d1qwja_ 68 HRRSSETSKDSSTSLDAIVEFLNYHNE--VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR 134 (228)
T ss_dssp EECCGGGSSTTCCHHHHHHHHHTTCTT--CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE
T ss_pred cccccccccccchhhhhhhhccccccc--cceeeeecccccccCchhhhhhhhhhhccCcccccccccc
Confidence 44332 2233445555555544332 3578888999999 5679999999988888877766654
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.31 E-value=1.2e-12 Score=111.13 Aligned_cols=116 Identities=14% Similarity=0.226 Sum_probs=83.7
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.+|||||| .|+||+. +.||+|++++|+|||+|+++.+.+ |+|+++..+ ++... .-.+.
T Consensus 1 ~is~IILAaG--~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~~-----~~~~~----~~~~~ 66 (205)
T d1w55a1 1 EMSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNIT-----YMKKF----TKNYE 66 (205)
T ss_dssp CEEEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHH-----HHHTT----CSSSE
T ss_pred CeEEEEeCCc--cCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccccc-----ccccc----ccccc
Confidence 3679999999 9999987 789999999999999999999865 666655322 22221 22333
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
++. ......++++.+++.++. +.++++.||.|+ ...+.++++.+.+. ++.+.+.+.
T Consensus 67 ~v~--Gg~~r~~Sv~~gl~~~~~---~~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~~ 124 (205)
T d1w55a1 67 FIE--GGDTRAESLKKALELIDS---EFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKV 124 (205)
T ss_dssp EEE--CCSSHHHHHHHHHTTCCS---SEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECC
T ss_pred ccc--cccchhhhhhhhhhhhhh---cceeeeccCcccCcHHHHHHHHhhhhcc--ccccccccc
Confidence 432 233567889999888754 479999999999 44578888866543 455666554
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.04 E-value=3.5e-09 Score=97.10 Aligned_cols=182 Identities=14% Similarity=0.201 Sum_probs=124.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc-----------EEEEcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
.++.+|+|||| .||||+- ..||+++||+ |+++++..++++.. ++.+....++...+|++.+ .
T Consensus 73 ~kvavv~LaGG--~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~-~ 146 (378)
T d2icya2 73 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKY-T 146 (378)
T ss_dssp TTEEEEEEECC--BSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGG-T
T ss_pred CCEEEEEecCC--cccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHh-c
Confidence 46899999999 9999976 8899999996 88999999999864 4445545556788999874 4
Q ss_pred cCCccEEEecCC------------------------CCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeeecCChHH
Q 016989 75 ELRIPVRYLRED------------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (379)
Q Consensus 75 ~~~~~i~~~~~~------------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~~~dl~~ 125 (379)
.+|..+.+..|. .+.|.++..... ++.+.....+++.+.+.|++....-..
T Consensus 147 ~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~ 226 (378)
T d2icya2 147 NSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 226 (378)
T ss_dssp TSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHH
T ss_pred cCCCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchH
Confidence 456666543321 145777665542 344444456799999999988544466
Q ss_pred HHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEEEeeecCCCc--------ccceeeeeEEEeCHhhHHHhh
Q 016989 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF--------VSDLINCGVYVFTPDIFNAIQ 195 (379)
Q Consensus 126 ~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l~~l~ 195 (379)
++-.|.++++++++-+.+...++. .-|.+...+..-+++.+.+.|... .-.+.+++.++|+-++++.+.
T Consensus 227 ~lG~~~~~~~~~~~kvv~Kt~~de-k~G~l~~~dg~~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~~ 303 (378)
T d2icya2 227 ILKHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLV 303 (378)
T ss_dssp HHHHHHHHTCSEEEEEEECCTTCC-SSCEEEEETTEEEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHhcCCcceeEEEecCCCCC-ceeEEEEECCceeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHHH
Confidence 788888889998887776542222 334444331123566666655321 233679999999988776654
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.04 E-value=4.7e-10 Score=95.36 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=54.0
Q ss_pred CccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEE----e-ceEECCCCEECCCcEEeecccc--------------c
Q 016989 278 PNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVV----T-NAIVGWKSSIGRWSRVQAEGDF--------------N 338 (379)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i----~-~s~ig~~~~ig~~~~i~~~~~~--------------~ 338 (379)
|.+.....+++++.|.+++.||+++.|+++|+ | . +..||++|.|+++|.|+.+... .
T Consensus 23 p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~v----Irgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~ 98 (210)
T d1qrea_ 23 PVIDPTAYIDPQASVIGEVTIGANVMVSPMAS----IRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVD 98 (210)
T ss_dssp CEECTTCEECTTCEEEESEEECTTCEECTTCE----EEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEET
T ss_pred CccCCCCEECCCCEEecceEECCCCEEccCee----eecccCCceEEcccceeeeeeEeccceeeccccccccCcccccc
Confidence 33433444567777777788888888887765 3 1 4566666666666666543210 1
Q ss_pred ccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 339 AKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 339 ~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.....+.||++|.||++|.|. +|.||+++.||.++
T Consensus 99 ~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs 134 (210)
T d1qrea_ 99 GKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQA 134 (210)
T ss_dssp TEEESEEECTTCEECTTCEEEEEEEECTTCEECTTC
T ss_pred ccccceeeccccccccccccccCCcccCCcEeeCCc
Confidence 112335666666666666664 45666666665553
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1.1e-09 Score=77.13 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=43.1
Q ss_pred EEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 313 VVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 313 ~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
.|. +..||++|.|++++.|.+. +.||++|+||++|.|++|+|++++.|++++.
T Consensus 10 ~I~g~v~IG~~~~I~~~~~i~g~---------~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~ 63 (78)
T d1fxja1 10 DLRGTLTHGRDVEIDTNVIIEGN---------VTLGHRVKIGTGCVIKNSVIGDDCEISPYTV 63 (78)
T ss_dssp EEEEEEEECSSCEECTTEEEEEE---------EEECTTCEECTTCEEESCEECTTCEECTTCE
T ss_pred EEeccEEECCCCEECCccEEeCC---------cEECCCCEECCCeEEecCEECCCCEEcCCcE
Confidence 454 7788888888888888876 8888888888888888888888888887764
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.89 E-value=2.7e-09 Score=91.33 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=46.1
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeecccccccc-----cceEECCCcEECCCcEE-eccEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKL-----GITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~-----~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~ 374 (379)
++|.|. .++||+.|+||++|+|..+..-.+.+ .+++|+++|.||.+|.| .+++|+++++|+.++.
T Consensus 136 ~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~ 207 (274)
T d3tdta_ 136 EGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVY 207 (274)
T ss_dssp TTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred CCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceE
Confidence 666787 88888888999888887775322223 35788888888888876 4666666666666553
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.80 E-value=6.2e-09 Score=81.81 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=50.0
Q ss_pred CeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccc-------cc--cceEECCCcEECCCcEEeccEECC
Q 016989 295 DVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNA-------KL--GITILGEAVGVEDEVVVTNSIVLP 365 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~-------~~--~~sii~~~~~i~~~~~i~~~ii~~ 365 (379)
++.|++++.|+ ++.|.+|+||++|+||+++.|++..+... ++ ..+.+++++.||++|+|.+|+|++
T Consensus 14 ~s~Ig~g~~I~-----~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~ 88 (135)
T d1yp2a1 14 DSVIGEGCVIK-----NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDK 88 (135)
T ss_dssp EEEECTTCEEE-----EEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECT
T ss_pred eCEECCCCEEe-----CCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecC
Confidence 35667777665 24677888899999988888888533210 00 113344557788888888777877
Q ss_pred Cceeccccc
Q 016989 366 NKTLNVSVH 374 (379)
Q Consensus 366 ~~~i~~~~~ 374 (379)
++.||+++.
T Consensus 89 ~~~IG~g~~ 97 (135)
T d1yp2a1 89 NARIGDNVK 97 (135)
T ss_dssp TCEECTTCE
T ss_pred CCEECCCcE
Confidence 777777765
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.78 E-value=1.3e-08 Score=85.00 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=37.7
Q ss_pred EEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccc--cccc-cceEECCCcEECCCcEE-eccEECC
Q 016989 291 TIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDF--NAKL-GITILGEAVGVEDEVVV-TNSIVLP 365 (379)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~--~~~~-~~sii~~~~~i~~~~~i-~~~ii~~ 365 (379)
.|.+++.|++++.|++ ++.|. ++.|+++|.||++|++..+... .+.+ ++|.||.+++|.++++| .+|+|++
T Consensus 96 ~I~~~~~I~~~~~Ig~----~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~Iga 171 (193)
T d3bswa1 96 LIMPYVVINAKAKIEK----GVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGG 171 (193)
T ss_dssp EECTTCEECTTCEECT----TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred eEeeeeeecCCceeee----ccccccccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECC
Confidence 3333444444444443 33443 5555555555555555444211 1111 11444444444444445 3666666
Q ss_pred Cceecccccc
Q 016989 366 NKTLNVSVHQ 375 (379)
Q Consensus 366 ~~~i~~~~~~ 375 (379)
++.|..++++
T Consensus 172 gsvV~~dv~~ 181 (193)
T d3bswa1 172 GATLVKNQDE 181 (193)
T ss_dssp TCEECSCBCS
T ss_pred CCEECcCCCC
Confidence 6666666653
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.78 E-value=1.2e-08 Score=85.29 Aligned_cols=50 Identities=20% Similarity=0.064 Sum_probs=26.5
Q ss_pred CCCCCeEEecCeEECC--CcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeec
Q 016989 285 DGTKNATIIGDVYVHP--SAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 285 ~~~~~~~i~~~~~i~~--~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~ 334 (379)
.+++++.|.+++.|+. ++.|+++|+ +++.|+ +++|+.++.|+.+|.|++.
T Consensus 76 ~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~ 130 (193)
T d3bswa1 76 LIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEF 130 (193)
T ss_dssp EECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecccc
Confidence 3456666666666633 566665554 344444 4444444444444544443
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.74 E-value=1.8e-08 Score=88.24 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeeccc---------------------ccccccce
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGD---------------------FNAKLGIT 344 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~---------------------~~~~~~~s 344 (379)
+++++|.+++.||+++.|+++|+ |+ ++.||++|.|+++|.|.++.. +.......
T Consensus 9 ~p~a~I~~~~~Ig~~v~Ig~~~~----I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v 84 (262)
T d2jf2a1 9 HPTAIVEEGASIGANAHIGPFCI----VGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRV 84 (262)
T ss_dssp CTTCEECTTCEECTTCEECTTCE----ECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEE
T ss_pred CCCCEECCCCEECCCCEECCCCE----ECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceE
Confidence 45666666666666666666554 43 444444444444444443321 01122347
Q ss_pred EECCCcEECCCcEEec--------cEECCCceeccccc
Q 016989 345 ILGEAVGVEDEVVVTN--------SIVLPNKTLNVSVH 374 (379)
Q Consensus 345 ii~~~~~i~~~~~i~~--------~ii~~~~~i~~~~~ 374 (379)
.||+++.|+++|.+.. +.||+++.|..+++
T Consensus 85 ~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~ 122 (262)
T d2jf2a1 85 EIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAH 122 (262)
T ss_dssp EECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCE
T ss_pred EECCeeeecceEeccCccccCccceEECCCCEEecccc
Confidence 8899999999998852 45566555554443
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.71 E-value=2.6e-08 Score=84.32 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=43.5
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
..+.||++|.||.++.|.++ +.||++|.||.++.|.+|.||+++.|+.++
T Consensus 102 ~~~~IG~~v~IG~~~~i~g~---------~~IGd~~~IG~gs~i~~~~IG~~~vIg~~s 151 (210)
T d1qrea_ 102 YAVYIGNNVSLAHQSQVHGP---------AAVGDDTFIGMQAFVFKSKVGNNCVLEPRS 151 (210)
T ss_dssp ESEEECTTCEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECTTC
T ss_pred cceeeccccccccccccccC---------CcccCCcEeeCCccccccccccCcEEecCc
Confidence 46889999999999999876 899999999999999888888888887654
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.65 E-value=3.9e-08 Score=86.04 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=24.3
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeec
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~ 334 (379)
+++++.|.+++.|+++++|+++|+ |+ +++||++|.|+++|.|.++
T Consensus 3 Ih~sAiI~~~a~Ig~~V~IG~~~v----Ig~~v~Ig~~~~I~~~v~I~~~ 48 (259)
T d1j2za_ 3 IAKTAIISPKAEINKGVEIGEFCV----IGDGVKLDEGVKLHNNVTLQGH 48 (259)
T ss_dssp BCTTCEECTTSEECTTCEECTTCE----ECTTCEECTTCEECTTCEECSE
T ss_pred CCCCCEECCCCEECCCCEECCCCE----ECCCCEECCCCEECCCEEEeCC
Confidence 356666666666666666665543 33 4444444444444444443
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.65 E-value=4.6e-08 Score=85.62 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=25.8
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceeccc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
..||+++.|+++|.|..+.+... ..+.||+++.|..+++| ++|.||+++.+...
T Consensus 84 v~IG~~v~ig~~~~i~~~~~~~~--~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~ 138 (262)
T d2jf2a1 84 VEIGDRNRIRESVTIHRGTVQGG--GLTKVGSDNLLMINAHIAHDCTVGNRCILANN 138 (262)
T ss_dssp EEECSSCEECTTCEEECCCTTTT--SEEEECSSCEECTTCEECTTCEECSSCEECTT
T ss_pred EEECCeeeecceEeccCccccCc--cceEECCCCEEecccccccccccCCCeeecCc
Confidence 34555555555555554422110 01555555555555555 25555554444443
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.64 E-value=5e-08 Score=79.83 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=29.5
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeec
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~ 334 (379)
+.+.+.|.+++.||+++.|+++|+-........||++|.+++++.+..+
T Consensus 21 I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~ 69 (172)
T d1xhda_ 21 IADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQS 69 (172)
T ss_dssp ECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECC
T ss_pred ECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccC
Confidence 3566777777777777777766651111123567777777766666543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=6.9e-08 Score=80.72 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=52.6
Q ss_pred CCCeEEecCeEE--CCCcEECCCCC--CCcEE---eceEECCCCEECCCcEEeeccc-c-------------cccc-cce
Q 016989 287 TKNATIIGDVYV--HPSAKIHPTAK--ENAVV---TNAIVGWKSSIGRWSRVQAEGD-F-------------NAKL-GIT 344 (379)
Q Consensus 287 ~~~~~i~~~~~i--~~~~~i~~~~~--~~~~i---~~s~ig~~~~ig~~~~i~~~~~-~-------------~~~~-~~s 344 (379)
.+++.|.|++.+ |.+++|+++|+ .+|.| ....||++|.||+++.|..... . ...+ +++
T Consensus 58 G~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v 137 (200)
T d1krra_ 58 GENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNV 137 (200)
T ss_dssp CSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTC
T ss_pred CCCCEEcCCEEEecCCccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCc
Confidence 356666666655 45556666555 55666 3668999999999999875431 0 1111 224
Q ss_pred EECCCcEECCCcEEe-ccEECCCceecccccc
Q 016989 345 ILGEAVGVEDEVVVT-NSIVLPNKTLNVSVHQ 375 (379)
Q Consensus 345 ii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~~ 375 (379)
.||.+|+|.+|++|. +|+|+++++|..++++
T Consensus 138 ~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~ 169 (200)
T d1krra_ 138 WIGSHVVINPGVTIGDNSVIGAGSIVTKDIPP 169 (200)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECSCBCT
T ss_pred ccceeeecccccccCCCcEEeCCCEEeeEcCC
Confidence 444445555555553 6666666666666653
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.62 E-value=2.4e-08 Score=78.33 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=26.0
Q ss_pred CcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec--cEECCCceecccc
Q 016989 311 NAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN--SIVLPNKTLNVSV 373 (379)
Q Consensus 311 ~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~--~ii~~~~~i~~~~ 373 (379)
+|.|++++||++|+||++|.|.++ +.+.+.+.+++++.+.+ .+|++++.|++++
T Consensus 78 ~~~I~~~iIg~~~~IG~g~~i~~~---------~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~ 133 (135)
T d1yp2a1 78 NCHIKRAIIDKNARIGDNVKIINK---------DNVQEAARETDGYFIKSGIVTVIKDALIPSGI 133 (135)
T ss_dssp TCEEESEEECTTCEECTTCEECCS---------SCCSCEEEGGGTEEEETTEEEECTTCEECTTC
T ss_pred ceEeccceecCCCEECCCcEECCC---------cccccceeeCCCEEECCCeEEECCCCEECcCc
Confidence 344445555555555555555444 33333333333333321 3566666666654
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.59 E-value=6.5e-08 Score=79.18 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEee
Q 016989 285 DGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 285 ~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~ 333 (379)
.+++++.|.+++.||+++.|+++|.-.+...+..|+++|.++..+.+..
T Consensus 18 ~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~ 66 (173)
T d1v3wa_ 18 FVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHT 66 (173)
T ss_dssp EECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEEC
T ss_pred EECCCCEEeCceEECCCCEECCCcccccccccccccccccccccccccc
Confidence 3457778888888888888887765111113456677777776666644
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=8.2e-08 Score=83.90 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=24.9
Q ss_pred CCCCeEEecCeEECCCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEe
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~ 332 (379)
+++++.|+++|.||+++.|+++++ +++.|. ++.||++|.|.+++.|+
T Consensus 9 I~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig 64 (259)
T d1j2za_ 9 ISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLG 64 (259)
T ss_dssp ECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEES
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEEC
Confidence 345555555555555555555444 444454 55555555555555553
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.52 E-value=1.9e-07 Score=77.71 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=27.2
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEee
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~ 333 (379)
+++|.+++.||+++.|+++|+ |+ ++.||++|.|++++.|.+
T Consensus 8 s~~I~~~v~Ig~~~~I~~~vv----I~~~v~IG~~~~I~~~~~i~~ 49 (196)
T d1g97a1 8 ATYIDIDVEIASEVQIEANVT----LKGQTKIGAETVLTNGTYVVD 49 (196)
T ss_dssp GCEECTTCEECTTCEECTTCE----EESSCEECTTCEECTTCEEES
T ss_pred eEEECCCcEECCCCEECCCCE----ECCCcEECCCceEcCceEeee
Confidence 446777778888888876654 44 666666666666666654
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.36 E-value=6.7e-07 Score=76.27 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=59.1
Q ss_pred eEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeeccc----ccccc-cceEECCCcEECCCcEEe-ccEECCC
Q 016989 296 VYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGD----FNAKL-GITILGEAVGVEDEVVVT-NSIVLPN 366 (379)
Q Consensus 296 ~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~----~~~~~-~~sii~~~~~i~~~~~i~-~~ii~~~ 366 (379)
.+|-.||+|+.+|. ..++|+ .+.||++|.|+.++.|++.-- ..+.| ++|.||.+|.|-+|+.|. +|+|+.|
T Consensus 126 s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~g 205 (274)
T d3tdta_ 126 SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMG 205 (274)
T ss_dssp EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccc
Confidence 45566666666666 677888 779999999999998865321 13444 359999999999999995 9999999
Q ss_pred ceeccccc
Q 016989 367 KTLNVSVH 374 (379)
Q Consensus 367 ~~i~~~~~ 374 (379)
++|++..+
T Consensus 206 v~i~~~t~ 213 (274)
T d3tdta_ 206 VYLGQSTR 213 (274)
T ss_dssp CEECTTCC
T ss_pred eEEecccc
Confidence 99988644
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=5.9e-07 Score=73.77 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=31.2
Q ss_pred EECCCCEECCCcEEeeccc--------ccccc-cceEECCCcEECCC------cEE-eccEECCCceecccccc
Q 016989 318 IVGWKSSIGRWSRVQAEGD--------FNAKL-GITILGEAVGVEDE------VVV-TNSIVLPNKTLNVSVHQ 375 (379)
Q Consensus 318 ~ig~~~~ig~~~~i~~~~~--------~~~~~-~~sii~~~~~i~~~------~~i-~~~ii~~~~~i~~~~~~ 375 (379)
.||++|.||++|.|..... ..+.+ .+++||++|.||.+ ++| .+|+|+++++|..++++
T Consensus 94 ~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kdvp~ 167 (182)
T d1ocxa_ 94 RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPD 167 (182)
T ss_dssp EECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCS
T ss_pred EECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEECCCCEECCCCEEccCCCC
Confidence 6777777777777765542 11111 12344444444444 444 36666666666666653
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.33 E-value=6.5e-07 Score=74.30 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=13.7
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceec
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLN 370 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~ 370 (379)
+.+++++.||+++.+. ++.++.++.++
T Consensus 66 ~~~g~~~~Ig~~~~i~~~~~i~~~~~i~ 93 (196)
T d1g97a1 66 SSVADGVIVGPYAHIRPNSSLGAQVHIG 93 (196)
T ss_dssp CEECTTCEECSSCEECSSCEECTTCEEE
T ss_pred ccccCcceeecceecccccccccceeec
Confidence 4455555555555552 44555544443
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=1.3e-06 Score=72.76 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=39.0
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEI 377 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~~~~ 377 (379)
++.||++|.||.+|.|.++ +.||++|.||.|++|... |.+++++. +.+.++
T Consensus 130 ~v~Igd~v~IG~~~~I~~G---------v~IG~~~vIgagSvV~kd-vp~~~iv~-G~PArv 180 (200)
T d1krra_ 130 PITIGNNVWIGSHVVINPG---------VTIGDNSVIGAGSIVTKD-IPPNVVAA-GVPCRV 180 (200)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEE-TTTTEE
T ss_pred eEEEccCcccceeeecccc---------cccCCCcEEeCCCEEeeE-cCCCcEEE-EeCCEE
Confidence 6788999999999888888 889999999999988765 46666653 334433
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.29 E-value=2e-06 Score=73.77 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=49.1
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-e------
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-T------ 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~------ 359 (379)
.+..|++++.||+++.+.+++ +.+|+ ++.||++|.|..++.++..... ..-...+||++|.||.||.| .
T Consensus 136 ~g~~I~~~~~Ig~g~~i~h~~--givig~~~~ig~~~~i~~~v~~~~~~~~-~~~~~~~Ig~~v~IGaga~Ilg~v~IG~ 212 (241)
T d1ssqa_ 136 FDVDIHPAAKIGHGIMFDHAT--GIVVGETSVIENDVSILQGVTLGGTGKE-SGDRHPKVREGVMIGAGAKILGNIEVGK 212 (241)
T ss_dssp HSCEECTTCEECSSCEESSCT--TCEECTTCEECTTCEECTTCEEECCSSS-CSSCSCEECTTCEECTTCEEESSCEECT
T ss_pred eeeccccCCEEccCcccCccc--eEEEeccceecCCeeecccccccccccC-CCCCCCccCCCeEECCCCEEcCCcEECC
Confidence 345667777777777776652 34565 7777777777777777654221 11123566666666666655 2
Q ss_pred ccEECCCceeccccc
Q 016989 360 NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ~~ii~~~~~i~~~~~ 374 (379)
+|+||.+++|-++++
T Consensus 213 ~a~IgAgsvV~kdVp 227 (241)
T d1ssqa_ 213 YAKIGANSVVLNPVP 227 (241)
T ss_dssp TCEECTTCEECSCBC
T ss_pred CCEECCCCEECCCCC
Confidence 444444444444444
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.7e-06 Score=70.84 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=46.1
Q ss_pred CeEECCCcEECCCCC--------------CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 295 DVYVHPSAKIHPTAK--------------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~--------------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
.+.||+++.|+++|. .++.+. +++||++|.||.+|.|.++ +.||++|.||.|++|.
T Consensus 92 ~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~G---------v~IG~~~vIgagsvV~ 162 (182)
T d1ocxa_ 92 PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVT 162 (182)
T ss_dssp CEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT---------CEECTTCEECTTCEEC
T ss_pred eEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCc---------EEECCCCEECCCCEEc
Confidence 335555555555554 455555 6788999999998888888 8899999999988886
Q ss_pred ccEECCCce
Q 016989 360 NSIVLPNKT 368 (379)
Q Consensus 360 ~~ii~~~~~ 368 (379)
.. |.+++.
T Consensus 163 kd-vp~~~i 170 (182)
T d1ocxa_ 163 KD-VPDNVV 170 (182)
T ss_dssp SC-BCSSEE
T ss_pred cC-CCCCeE
Confidence 54 455544
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.25 E-value=8.5e-07 Score=74.27 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=12.7
Q ss_pred cEEe-ceEECCCCEECCCcEEe
Q 016989 312 AVVT-NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 312 ~~i~-~s~ig~~~~ig~~~~i~ 332 (379)
+.|. ++.||++|.|+++|.|.
T Consensus 55 ~~I~~~v~IG~~~~Ig~gv~I~ 76 (203)
T d1mr7a_ 55 PILNDKLKIGKFCSIGPGVTII 76 (203)
T ss_dssp GGGCCCEEECSSCEECTTCEEE
T ss_pred CEECCccEECCCeEECCCCcEe
Confidence 3344 56666677776666663
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.22 E-value=2.2e-06 Score=69.66 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=6.9
Q ss_pred ceEECCCCEECCCcEE
Q 016989 316 NAIVGWKSSIGRWSRV 331 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i 331 (379)
+++||++|.||++|.|
T Consensus 28 ~v~IG~~~~Ig~~~~I 43 (173)
T d1v3wa_ 28 DVVLEEKTSVWPSAVL 43 (173)
T ss_dssp EEEECTTCEECTTCEE
T ss_pred ceEECCCCEECCCccc
Confidence 4444444444444444
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.22 E-value=2.9e-06 Score=68.92 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=6.5
Q ss_pred ceEECCCCEECCCcEE
Q 016989 316 NAIVGWKSSIGRWSRV 331 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i 331 (379)
++.||++|.|+++|.|
T Consensus 30 ~v~IG~~~~Ig~~~~I 45 (172)
T d1xhda_ 30 DVYVGEESSIWFNTVI 45 (172)
T ss_dssp EEEECTTCEECTTCEE
T ss_pred CEEECCCcEecCCccc
Confidence 3344444444444433
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.21 E-value=1.7e-06 Score=72.51 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=13.9
Q ss_pred eceEECCCCEECCCcEEe
Q 016989 315 TNAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~ 332 (379)
.+.+||++|.|+++|.|.
T Consensus 53 ~~v~IG~~~~I~~g~~I~ 70 (208)
T d1xata_ 53 DKLVIGSFCSIGSGAAFI 70 (208)
T ss_dssp CCEEECSSCEECTTCEEE
T ss_pred CeeEECCCCEECCCCEEe
Confidence 467888888888888773
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.12 E-value=4e-05 Score=72.02 Aligned_cols=180 Identities=13% Similarity=0.211 Sum_probs=114.8
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc-----------------EEEEcccchHHHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-----------------IYLVGFYEEREFA 66 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~-----------------iiv~~~~~~~~i~ 66 (379)
.++.+|+|||| .||||+- ..||.++|| .|+++++..++.+.. ++.+.....+..+
T Consensus 101 gkvavvllaGG--~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~ 175 (501)
T d1jv1a_ 101 NKVAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTK 175 (501)
T ss_dssp TCEEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHH
T ss_pred CCEEEEEECCC--ccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHH
Confidence 36889999999 9999987 789999998 589999998777642 4445555556789
Q ss_pred HHHHhhcccCCcc---EEEecCC---------------------CCCChHHHHHHH-----HHhhccCCCCeEEEEcCCe
Q 016989 67 LYVSSISNELRIP---VRYLRED---------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDV 117 (379)
Q Consensus 67 ~~l~~~~~~~~~~---i~~~~~~---------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~ 117 (379)
+|+... ..+|++ +.+..|. .+.|.++..... ++.+....-+++.+.+.|+
T Consensus 176 ~~l~~~-~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN 254 (501)
T d1jv1a_ 176 EFFTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDN 254 (501)
T ss_dssp HHHHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTB
T ss_pred HHHHhc-cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCC
Confidence 999874 445543 3332221 145665444432 3333333346899999999
Q ss_pred ee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcE--EEeeecCC----------CcccceeeeeEE
Q 016989 118 CC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNEL--LHYTEKPE----------TFVSDLINCGVY 184 (379)
Q Consensus 118 i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v--~~~~ekp~----------~~~~~~~~~Giy 184 (379)
+. ...-..++-.+...++++.+-+.+... ..+.-|.+... +|+. ..+.+-|. ...-...+++.+
T Consensus 255 ~l~~~~Dp~~lG~~~~~~~~~~~kvv~k~~-~~e~~G~l~~~--dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~ 331 (501)
T d1jv1a_ 255 ILVKVADPRFIGFCIQKGADCGAKVVEKTN-PTEPVGVVCRV--DGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANH 331 (501)
T ss_dssp TTCCTTCHHHHHHHHHTTCSEEEEEEECCS-TTCSCCEEEEE--TTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEE
T ss_pred ccccccCHHHHHHHHhcccceeEEEEEcCC-CCcccceEEEE--CCeEEEEEeccCCHHHHhhccCCCcccccccceehe
Confidence 87 333355677788888888776665431 23345666554 4544 33333221 111335789999
Q ss_pred EeCHhhHHHhh
Q 016989 185 VFTPDIFNAIQ 195 (379)
Q Consensus 185 ~~~~~~l~~l~ 195 (379)
+|+-++++.+.
T Consensus 332 ~fsl~fl~~~~ 342 (501)
T d1jv1a_ 332 FFTVPFLRDVV 342 (501)
T ss_dssp EEEHHHHHHHH
T ss_pred eeEHHHHHHHH
Confidence 99988876654
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=6.1e-06 Score=68.58 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=31.9
Q ss_pred eEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeec
Q 016989 290 ATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~ 334 (379)
..|.+.+.||+++.|+++| .|+ +++||++|.|+++|.|.+.
T Consensus 9 ~~i~~~v~IG~~v~Ig~~v----vI~~~v~IG~~~~I~~~~~I~~~ 50 (201)
T d2oi6a1 9 FDLRGTLTHGRDVEIDTNV----IIEGNVTLGHRVKIGTGCVIKNS 50 (201)
T ss_dssp EEEEEEEEECSSCEECTTE----EEEEEEEECTTCEECTTCEEESC
T ss_pred EEECceEEECCCCEECCCC----EECCceEECCCcEECCCEEEeee
Confidence 4678888888888888654 466 8888888888888888763
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.08 E-value=1.8e-06 Score=72.26 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=25.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|.++ +.||++|.|+.++.|... +.+++.+
T Consensus 113 ~v~IGd~v~IG~~~~I~~g---------v~IG~~~~IgagSvV~kd-v~~~~i~ 156 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMPG---------VKIGDGAIVAANSVVVKD-IAPYMLA 156 (203)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CeEECCEEEECCceeEEeE---------EEEcCCCEEecCeEEeee-CCCCEEE
Confidence 4556666666666666655 666666666666666433 3444433
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.00 E-value=6.5e-06 Score=70.42 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=53.7
Q ss_pred CeEEecCeEECCCcEECCCCC-----CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEE
Q 016989 289 NATIIGDVYVHPSAKIHPTAK-----ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIV 363 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~-----~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii 363 (379)
+..|++.+.||+++.+.+++. ....-++.+||++|.||+|+.|.++ ..||++|+||.|+.|... |
T Consensus 157 givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~---------v~IG~~a~IgAgsvV~kd-V 226 (241)
T d1ssqa_ 157 GIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN---------IEVGKYAKIGANSVVLNP-V 226 (241)
T ss_dssp TCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS---------CEECTTCEECTTCEECSC-B
T ss_pred eEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCC---------cEECCCCEECCCCEECCC-C
Confidence 444555555555555555544 0111125789999999999999998 999999999999999766 4
Q ss_pred CCCceeccccccccc
Q 016989 364 LPNKTLNVSVHQEII 378 (379)
Q Consensus 364 ~~~~~i~~~~~~~~~ 378 (379)
.+++++ .+++.+||
T Consensus 227 p~~~vv-~G~PAr~I 240 (241)
T d1ssqa_ 227 PEYATA-AGVPARIV 240 (241)
T ss_dssp CTTCEE-ETTTTEEC
T ss_pred CCCCEE-EecCcEEe
Confidence 666654 34444443
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.92 E-value=8e-06 Score=68.33 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=25.5
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+++||++|.||.+|.|.++ +.||++|.||.++.|...
T Consensus 108 ~v~Igd~v~IG~~s~I~~g---------v~IG~~~vIgagSvVtkd 144 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMPG---------VRVGHGAIIGSRALVTGD 144 (208)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEECSC
T ss_pred CEEEcCCeEECccccccCC---------eEeCCCCEEeCceEEeec
Confidence 5677777777777777766 777777777777766533
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=2.1e-05 Score=65.23 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCCeEEecCeEECCCcEECCCCC-------------CCcEEeceEECCCCEECCCcEEeeccc--------ccccccceE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITI 345 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~si 345 (379)
.+++.|.+++.||++++|+++|+ ..+...++.++.+|.++.++.+..... ....++.+.
T Consensus 24 g~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~~~~~~ 103 (201)
T d2oi6a1 24 DTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKAR 103 (201)
T ss_dssp CTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEE
T ss_pred CCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeeeeeeecceeeeeeee
Confidence 47778888888888888888776 223334556666666666666544321 012234567
Q ss_pred ECCCcEECCCcEEeccEECCCceecccc
Q 016989 346 LGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 346 i~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
|++++++++.+.+.++.+++++.++.+.
T Consensus 104 ig~~~~i~~~~~~~~~~~~~~~~i~~~~ 131 (201)
T d2oi6a1 104 LGKGSKAGHLTYLGDAEIGDNVNIGAGT 131 (201)
T ss_dssp ECTTCEEEEEEEEEEEEECTTCEECTTC
T ss_pred eCCCeEEceeeeecccCcCccccccCce
Confidence 7777777777666666777766666553
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.62 E-value=5.8e-05 Score=67.33 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=6.4
Q ss_pred eEEecCeEECCCcEEC
Q 016989 290 ATIIGDVYVHPSAKIH 305 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~ 305 (379)
+.+.+++.|+.+++|+
T Consensus 64 A~V~~~a~I~~na~i~ 79 (320)
T d2f9ca1 64 AMAFAGTEITGNARIT 79 (320)
T ss_dssp CEECSSCEECTTCEEC
T ss_pred cEECCCCEECCCCEEC
Confidence 3333334444444443
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.51 E-value=0.00014 Score=64.68 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=21.7
Q ss_pred CCeEEe-cCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEe
Q 016989 288 KNATII-GDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 288 ~~~~i~-~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~ 332 (379)
.+|.|. +++.|..++.|..++. |. +++|+.++.||+++.|+
T Consensus 55 g~~wv~~~nA~V~~~a~I~~na~----i~~~~~I~~~a~Ig~n~~ig 97 (320)
T d2f9ca1 55 GDCWIYDENAMAFAGTEITGNAR----ITQPCTLYNNVRIGDNVWID 97 (320)
T ss_dssp SSCEECSTTCEECSSCEECTTCE----ECSSCEECSSCEECSSCEES
T ss_pred CCCEEECCCcEECCCCEECCCCE----ECCCcEECCCcEECCcEEEC
Confidence 455654 3566666666665443 33 55555555555555443
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.76 E-value=3.9 Score=34.46 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=60.1
Q ss_pred ceeCCc--chhHHHHHhcCc---------EEEEccc-chHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhc
Q 016989 36 FPLGGQ--PMVHHPISACKR---------IYLVGFY-EEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (379)
Q Consensus 36 lpi~g~--pli~~~i~~l~~---------iiv~~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~ 103 (379)
+|.-|+ ..|..+|+.+.+ |+|+-.. .+......+.........++.++..+...|.+.+.-.++....
T Consensus 28 Ip~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~ 107 (328)
T d1xhba2 28 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR 107 (328)
T ss_dssp EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhhh
Confidence 344464 246677766532 5555322 1222222222222233345666666667799988888888765
Q ss_pred cCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCce
Q 016989 104 EDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 104 ~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ 137 (379)
. +.++++++|..+ +.-+..+++...+.+..+
T Consensus 108 g---d~i~flD~D~~~~p~~l~~l~~~~~~~~~~~ 139 (328)
T d1xhba2 108 G---QVITFLDAHCECTAGWLEPLLARIKHDRRTV 139 (328)
T ss_dssp S---SEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred c---ceeeecCcccccChhHHHHHHHHHhcCCCeE
Confidence 4 589999999999 445888888777666543
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