Citrus Sinensis ID: 016992
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 379 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SU94 | 390 | Protein arginine N-methyl | yes | no | 0.907 | 0.882 | 0.730 | 1e-158 | |
| Q0J2C6 | 387 | Probable protein arginine | yes | no | 0.791 | 0.775 | 0.794 | 1e-155 | |
| A2Z0C0 | 387 | Probable protein arginine | N/A | no | 0.791 | 0.775 | 0.794 | 1e-155 | |
| O82210 | 366 | Probable protein arginine | no | no | 0.820 | 0.849 | 0.755 | 1e-149 | |
| Q9JIF0 | 371 | Protein arginine N-methyl | yes | no | 0.883 | 0.902 | 0.517 | 1e-103 | |
| Q5RGQ2 | 419 | Protein arginine N-methyl | yes | no | 0.794 | 0.718 | 0.553 | 1e-103 | |
| Q99873 | 361 | Protein arginine N-methyl | yes | no | 0.873 | 0.916 | 0.520 | 1e-103 | |
| Q28F07 | 351 | Protein arginine N-methyl | yes | no | 0.833 | 0.900 | 0.527 | 1e-103 | |
| Q8AV13 | 369 | Protein arginine N-methyl | N/A | no | 0.844 | 0.867 | 0.531 | 1e-102 | |
| Q6PAK3 | 394 | Protein arginine N-methyl | no | no | 0.812 | 0.781 | 0.538 | 1e-102 |
| >sp|Q9SU94|ANM11_ARATH Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 559 bits (1441), Expect = e-158, Method: Compositional matrix adjust.
Identities = 277/379 (73%), Positives = 308/379 (81%), Gaps = 35/379 (9%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------------------------ 302
MEPLVDTVDQNQIVT+ +LLKTMDISKM GDASFT
Sbjct: 252 MEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 303 --CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 360
CHKL+GFSTGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+DI L
Sbjct: 312 TMCHKLLGFSTGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLS 371
Query: 361 YSLQGRHSAISRIQYYKMR 379
YSL G+H ISR Q+YKMR
Sbjct: 372 YSLNGQHCKISRTQHYKMR 390
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain. Type I arginine methyltransferase active on both histones and non-histone proteins. Required for leaves and flowers development. Mediates the methylation of MBD7. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5 |
| >sp|Q0J2C6|ANM1_ORYSJ Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 259/326 (79%), Positives = 280/326 (85%), Gaps = 26/326 (7%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLF
Sbjct: 62 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLF 121
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
CAKAGA HVYA+ECSQMA+MAK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMG
Sbjct: 122 CAKAGAKHVYAIECSQMADMAKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMG 181
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 259
YFLLFENMLNTVLYARDKWL D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM
Sbjct: 182 YFLLFENMLNTVLYARDKWLADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMR 241
Query: 260 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT----------------- 302
CIKKQAMMEPLVDTVD NQIVTNCQLLKTMDISKM PGDASFT
Sbjct: 242 CIKKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALV 301
Query: 303 ---------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPR 353
CHK+MGFSTGP+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNKKNPR
Sbjct: 302 AYFNVSFTKCHKMMGFSTGPRSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNKKNPR 361
Query: 354 DVDIMLKYSLQGRHSAISRIQYYKMR 379
D+DI L Y+L G +SR Q+YKMR
Sbjct: 362 DIDIKLCYALSGHRCQVSRTQHYKMR 387
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2Z0C0|ANM1_ORYSI Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. indica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 259/326 (79%), Positives = 280/326 (85%), Gaps = 26/326 (7%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLF
Sbjct: 62 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLF 121
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
CAKAGA HVYA+ECSQMA+MAK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMG
Sbjct: 122 CAKAGAKHVYAIECSQMADMAKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMG 181
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 259
YFLLFENMLNTVLYARDKWL D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM
Sbjct: 182 YFLLFENMLNTVLYARDKWLADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMR 241
Query: 260 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT----------------- 302
CIKKQAMMEPLVDTVD NQIVTNCQLLKTMDISKM PGDASFT
Sbjct: 242 CIKKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALV 301
Query: 303 ---------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPR 353
CHK+MGFSTGP+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNKKNPR
Sbjct: 302 AYFNVSFTKCHKMMGFSTGPRSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNKKNPR 361
Query: 354 DVDIMLKYSLQGRHSAISRIQYYKMR 379
D+DI L Y+L G +SR Q+YKMR
Sbjct: 362 DIDIKLCYALSGHRCQVSRTQHYKMR 387
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O82210|ANM12_ARATH Probable protein arginine N-methyltransferase 1.2 OS=Arabidopsis thaliana GN=PRMT12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/344 (75%), Positives = 288/344 (83%), Gaps = 33/344 (9%)
Query: 69 DADVSMIDGEDDK-------TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLF 121
DAD SM DG+D+ TSADYYFDSYSHFGIHEEMLKDVVRTKSYQ+VIY+NKFL
Sbjct: 23 DADESMHDGDDNNADVADDITSADYYFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLI 82
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181
KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+ AK+IV++NGFS+VITVLKGKIE
Sbjct: 83 KDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADTAKEIVKSNGFSDVITVLKGKIE 142
Query: 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241
EIELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWLVD GIVLPDKASLY+TAIEDA
Sbjct: 143 EIELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAH 202
Query: 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASF 301
YKDDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQIVT+ +LLKTMDISKM GDASF
Sbjct: 203 YKDDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQIVTDSKLLKTMDISKMAAGDASF 262
Query: 302 T--------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICE 335
T CHK MGFSTGPKSRATHWKQTVLYLEDVLTICE
Sbjct: 263 TAPFKLVAQRNDHIHALVAYFDVSFTMCHKKMGFSTGPKSRATHWKQTVLYLEDVLTICE 322
Query: 336 GEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
GE I+GS+T+A NKKNPRDVDI L YSL G+H ISR +YKMR
Sbjct: 323 GETITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRTHFYKMR 366
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9JIF0|ANM1_MOUSE Protein arginine N-methyltransferase 1 OS=Mus musculus GN=Prmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 248/365 (67%), Gaps = 30/365 (8%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFT--------------------------CHKLMGFSTGPK 314
TN L+K +DI + D +FT CHK GFST P+
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPE 306
Query: 315 SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQ 374
S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 307 SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 366
Query: 375 YYKMR 379
Y+MR
Sbjct: 367 DYRMR 371
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q5RGQ2|ANM8B_DANRE Protein arginine N-methyltransferase 8-B OS=Danio rerio GN=prmt8b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/327 (55%), Positives = 229/327 (70%), Gaps = 26/327 (7%)
Query: 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSL 138
++ TS DYYFDSY+HFGIHEEMLKD VRT +Y+N +Y NK +FKDK+VLDVG+GTGILS+
Sbjct: 93 EEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHIFKDKIVLDVGSGTGILSM 152
Query: 139 FCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198
F AKAGA HVY +ECS ++ +++I+++N +VIT+LKGK+EE ELPV +VDIIISEWM
Sbjct: 153 FAAKAGAKHVYGIECSSISEYSEKIIKSNHLDSVITILKGKVEETELPVDQVDIIISEWM 212
Query: 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 258
GY L +E+MLNTV+YARDKWL G + PD+A+LY+ AIED +YKD KI +W NVYGFDM
Sbjct: 213 GYCLFYESMLNTVIYARDKWLKPGGFMFPDRATLYVVAIEDRQYKDFKIHWWENVYGFDM 272
Query: 259 SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------- 302
+CI+ AMMEPLVD VD Q+VTN L+K +DI + D SFT
Sbjct: 273 TCIRNVAMMEPLVDIVDPKQVVTNSCLVKEVDIYTVKTEDLSFTSAFCLQIQRNDYVHAL 332
Query: 303 ----------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNP 352
CHK GFST P + +THWKQTV YLED LT+ GE I GS+TV PN+ N
Sbjct: 333 VTYFNIEFTKCHKKTGFSTAPDAPSTHWKQTVFYLEDYLTVRRGEEILGSITVRPNENNE 392
Query: 353 RDVDIMLKYSLQGRHSAISRIQYYKMR 379
RD+D + +G+ + YKMR
Sbjct: 393 RDLDFTFELDFKGQLCDAAISHDYKMR 419
|
Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate ews protein; however its precise role toward ews remains unclear as it still interacts with fully methylated ews. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q99873|ANM1_HUMAN Protein arginine N-methyltransferase 1 OS=Homo sapiens GN=PRMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/361 (52%), Positives = 245/361 (67%), Gaps = 30/361 (8%)
Query: 49 LDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDV 104
+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEMLKD
Sbjct: 1 MENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDE 60
Query: 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164
VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV
Sbjct: 61 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 120
Query: 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224
+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG+
Sbjct: 121 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGL 180
Query: 225 VLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQ 284
+ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN
Sbjct: 181 IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNAC 240
Query: 285 LLKTMDISKMGPGDASFT--------------------------CHKLMGFSTGPKSRAT 318
L+K +DI + D +FT CHK GFST P+S T
Sbjct: 241 LIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYT 300
Query: 319 HWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKM 378
HWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S Y+M
Sbjct: 301 HWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRM 360
Query: 379 R 379
R
Sbjct: 361 R 361
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q28F07|ANM1_XENTR Protein arginine N-methyltransferase 1 OS=Xenopus tropicalis GN=prmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 238/349 (68%), Gaps = 33/349 (9%)
Query: 64 DEAMCDADVSMIDGE-------DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ 116
+ + C+ +VS E +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++
Sbjct: 3 EASTCNMEVSCTQPESSVKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFH 62
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL 176
N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++
Sbjct: 63 NRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTII 122
Query: 177 KGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTA 236
KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TA
Sbjct: 123 KGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYVTA 182
Query: 237 IEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP 296
IED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI +
Sbjct: 183 IEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKV 242
Query: 297 GDASFT--------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDV 330
D +FT CHK GFST P+S THWKQTV Y+ED
Sbjct: 243 DDLTFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDY 302
Query: 331 LTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
LT+ GE I G++++ PN KN RD+D + +G+ +S Y+MR
Sbjct: 303 LTVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCSTDYRMR 351
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice (By similarity). Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/346 (53%), Positives = 234/346 (67%), Gaps = 26/346 (7%)
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
T IED + + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+
Sbjct: 24 TPIEDVNSAPPEGGVKTNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 83
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK
Sbjct: 84 LFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGK 143
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED
Sbjct: 144 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIED 203
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
+YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V+N L+K +DI + D
Sbjct: 204 RQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDL 263
Query: 300 SFT--------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTI 333
SFT CHK GFST P+S THWKQTV Y+ED LT+
Sbjct: 264 SFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTV 323
Query: 334 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
GE I G++ + PN KN RD+D +G+ +S Y+MR
Sbjct: 324 KTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQLCELSCSTDYRMR 369
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q6PAK3|ANM8_MOUSE Protein arginine N-methyltransferase 8 OS=Mus musculus GN=Prmt8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/334 (53%), Positives = 232/334 (69%), Gaps = 26/334 (7%)
Query: 72 VSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGA 131
+S + ++ TS DYYFDSY+HFGIHEEMLKD VRT +Y+N +Y NK +FKDKVVLDVG+
Sbjct: 61 MSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGS 120
Query: 132 GTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191
GTGILS+F AKAGA V+ +ECS +++ +++I++AN NVIT+ KGK+EE+ELPV KVD
Sbjct: 121 GTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNVITIFKGKVEEVELPVEKVD 180
Query: 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWN 251
IIISEWMGY L +E+MLNTV++ARDKWL G++ PD+A+LY+ AIED +YKD KI +W
Sbjct: 181 IIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWE 240
Query: 252 NVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT--------- 302
NVYGFDM+CI+ AM EPLVD VD Q+VTN L+K +DI + + SFT
Sbjct: 241 NVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQR 300
Query: 303 -----------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTV 345
CHK MGFST P + THWKQTV YLED LT+ GE I G++++
Sbjct: 301 NDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISM 360
Query: 346 APNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
PN KN RD+D + +G+ S YKMR
Sbjct: 361 KPNAKNVRDLDFTVDLDFKGQLCETSVSNDYKMR 394
|
Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate EWS protein; however its precise role toward EWS remains unclear as it still interacts with fully methylated EWS. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 379 | ||||||
| 255546199 | 387 | protein arginine n-methyltransferase 1, | 0.949 | 0.930 | 0.743 | 1e-170 | |
| 118487693 | 384 | unknown [Populus trichocarpa] | 0.934 | 0.921 | 0.768 | 1e-165 | |
| 224122474 | 377 | arginine methyltransferease [Populus tri | 0.910 | 0.915 | 0.772 | 1e-165 | |
| 363806956 | 376 | uncharacterized protein LOC100795951 [Gl | 0.923 | 0.930 | 0.720 | 1e-163 | |
| 356520854 | 379 | PREDICTED: probable protein arginine N-m | 0.931 | 0.931 | 0.723 | 1e-163 | |
| 255647533 | 379 | unknown [Glycine max] | 0.931 | 0.931 | 0.723 | 1e-162 | |
| 225444983 | 406 | PREDICTED: protein arginine N-methyltran | 0.926 | 0.864 | 0.727 | 1e-159 | |
| 15233606 | 390 | protein arginine N-methyltransferase 1 [ | 0.907 | 0.882 | 0.730 | 1e-157 | |
| 357501183 | 369 | Arginine methyltransferease [Medicago tr | 0.868 | 0.891 | 0.735 | 1e-156 | |
| 297738697 | 350 | unnamed protein product [Vitis vinifera] | 0.791 | 0.857 | 0.815 | 1e-156 |
| >gi|255546199|ref|XP_002514159.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] gi|223546615|gb|EEF48113.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/406 (74%), Positives = 333/406 (82%), Gaps = 46/406 (11%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVD-G 59
M R KNN++S + STK+ RF DA+ED T SS L +S D G
Sbjct: 1 MSRSKNNEASMSQ--STKI--------------RFEDADEDLTTESSYLGESTVVGDDKG 44
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
AI+DE+M +ADVS ID DKTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKF
Sbjct: 45 IAIDDESMGEADVSCID---DKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKF 101
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFK+KVVLDVGAGTGILSLFCAKAGAAHVYAVECS MA+MAK+IVE+NGFSNV+TVLKGK
Sbjct: 102 LFKNKVVLDVGAGTGILSLFCAKAGAAHVYAVECSAMADMAKEIVESNGFSNVVTVLKGK 161
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGYFLL+ENMLNTVLYARDKWLV+DGI+LPDKASL+LTAIED
Sbjct: 162 VEELELPVAKVDIIISEWMGYFLLYENMLNTVLYARDKWLVNDGILLPDKASLFLTAIED 221
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
AEYK+DKIEFWN VYGFDMSCIKKQAMMEPLVDTVDQNQ+VTNCQLLKTMDISKM GDA
Sbjct: 222 AEYKEDKIEFWNRVYGFDMSCIKKQAMMEPLVDTVDQNQVVTNCQLLKTMDISKMASGDA 281
Query: 300 SFT--------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTI 333
SFT CHKLMGFSTGP+SRATHWKQTVLYLEDVLTI
Sbjct: 282 SFTVPFKLVAERDDYIHALVAYFDVSFTRCHKLMGFSTGPRSRATHWKQTVLYLEDVLTI 341
Query: 334 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
CEGEAI+GS+TVAPNKKNPRD+DIM+KY+L GR A++R QYYKMR
Sbjct: 342 CEGEAITGSMTVAPNKKNPRDIDIMVKYALNGRRCAVTRTQYYKMR 387
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487693|gb|ABK95671.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/384 (76%), Positives = 315/384 (82%), Gaps = 30/384 (7%)
Query: 23 NPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDG-EDDK 81
N R Q I RF D EE SS LDDS+ A AI+D AM D DVS +DG +DDK
Sbjct: 4 NNTRHQATKI-RFNDEEE--EEESSNLDDSIVATEKSIAIDDVAMQDPDVSFVDGCDDDK 60
Query: 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA 141
TSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA
Sbjct: 61 TSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA 120
Query: 142 KAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201
KAGAAHVYAVECS MANMAK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYF
Sbjct: 121 KAGAAHVYAVECSHMANMAKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYF 180
Query: 202 LLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCI 261
LLFENMLN+VLY RDKWLV+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CI
Sbjct: 181 LLFENMLNSVLYTRDKWLVNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCI 240
Query: 262 KKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------------------- 302
KKQAM EPLVDTVDQNQIVTNCQ LKTMDISKM GD SFT
Sbjct: 241 KKQAMGEPLVDTVDQNQIVTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAY 300
Query: 303 -------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDV 355
CHK GFSTGP+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKNPRD+
Sbjct: 301 FDVSFTKCHKFTGFSTGPRSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKNPRDI 360
Query: 356 DIMLKYSLQGRHSAISRIQYYKMR 379
DIM+KYSL GR SR Q+YKMR
Sbjct: 361 DIMIKYSLNGRRCVASRTQHYKMR 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122474|ref|XP_002330490.1| arginine methyltransferease [Populus trichocarpa] gi|222872424|gb|EEF09555.1| arginine methyltransferease [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 289/374 (77%), Positives = 312/374 (83%), Gaps = 29/374 (7%)
Query: 33 TRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDG-EDDKTSADYYFDSY 91
TR +E++ SS LDDS+ A AI+D AM D DVS +DG +DDKTSADYYFDSY
Sbjct: 6 TRHQATKEEEE--SSNLDDSIVATEKSIAIDDVAMQDPDVSFVDGCDDDKTSADYYFDSY 63
Query: 92 SHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV 151
SHFGIHEEMLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV
Sbjct: 64 SHFGIHEEMLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV 123
Query: 152 ECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTV 211
ECS MANMAK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+V
Sbjct: 124 ECSHMANMAKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSV 183
Query: 212 LYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLV 271
LY RDKWLV+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CIKKQAM EPLV
Sbjct: 184 LYTRDKWLVNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCIKKQAMGEPLV 243
Query: 272 DTVDQNQIVTNCQLLKTMDISKMGPGDASFT--------------------------CHK 305
DTVDQNQIVTNCQ LKTMDISKM GD SFT CHK
Sbjct: 244 DTVDQNQIVTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAYFDVSFTKCHK 303
Query: 306 LMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 365
GFSTGP+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKNPRD+DIM+KYSL G
Sbjct: 304 FTGFSTGPRSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKNPRDIDIMIKYSLNG 363
Query: 366 RHSAISRIQYYKMR 379
R SR Q+YKMR
Sbjct: 364 RRCVASRTQHYKMR 377
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806956|ref|NP_001242055.1| uncharacterized protein LOC100795951 [Glycine max] gi|255639209|gb|ACU19903.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/405 (72%), Positives = 318/405 (78%), Gaps = 55/405 (13%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MG+RKN DNN + S S D +N RF +A VD +
Sbjct: 1 MGQRKN----DNN--INQCSSSKEDADMNNNHLRFEEA------------------VDES 36
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQN+FL
Sbjct: 37 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNRFL 91
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 92 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 151
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIED
Sbjct: 152 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDT 211
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 212 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 271
Query: 301 FT--------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 334
FT CHKLMGFSTGP+SRATHWKQTVLYLEDVLTIC
Sbjct: 272 FTVPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTIC 331
Query: 335 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
EGEAI GS+ VAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 332 EGEAIVGSMAVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520854|ref|XP_003529075.1| PREDICTED: probable protein arginine N-methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 293/405 (72%), Positives = 323/405 (79%), Gaps = 52/405 (12%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRKNN +++ SS + +D N + RF +A+E VD +
Sbjct: 1 MGRRKNNSNNNQCSSSKEDADMNSNH------LRFEEADE---------------AVDES 39
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQNKFL
Sbjct: 40 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDSVRTKTYQNVIYQNKFL 94
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 95 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 154
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIEDA
Sbjct: 155 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDA 214
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 215 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 274
Query: 301 FT--------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 334
F CHKLMGFSTGP+SRATHWKQTVLYLEDVLT+C
Sbjct: 275 FAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTVC 334
Query: 335 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
EGEAI GS+TVAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 335 EGEAIVGSMTVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647533|gb|ACU24230.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 293/405 (72%), Positives = 322/405 (79%), Gaps = 52/405 (12%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRKNN +++ SS + +D N + RF +A+E VD +
Sbjct: 1 MGRRKNNSNNNQCSSSKEDTDMNSNH------LRFEEADE---------------AVDES 39
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQNKFL
Sbjct: 40 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDSVRTKTYQNVIYQNKFL 94
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 95 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 154
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIEDA
Sbjct: 155 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDA 214
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 215 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 274
Query: 301 FT--------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 334
F CHKLMGFSTGP+SRATHWKQTVLYLEDVLT+C
Sbjct: 275 FAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTVC 334
Query: 335 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
EGEAI GS TVAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 335 EGEAIVGSTTVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444983|ref|XP_002282760.1| PREDICTED: protein arginine N-methyltransferase 1.1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/392 (72%), Positives = 313/392 (79%), Gaps = 41/392 (10%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEA----MC-----DADVSMIDGED 79
T TRF D + ++AT SS L+D + + T +D+A MC D D++ D
Sbjct: 15 QGTHTRFEDEQIEEATESSNLEDPMCDADESTIGQDKAIDDTMCEPGESDKDIARSFELD 74
Query: 80 D------KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGT 133
D KTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIY+NKFLFK+KVVLDVGAGT
Sbjct: 75 DSVIGSDKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGT 134
Query: 134 GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193
GILSLFCAKAGA HVYAVECS MA+MAK+IVE NGFS+VITV+KGK+EEI LPV +VDII
Sbjct: 135 GILSLFCAKAGAKHVYAVECSHMADMAKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDII 194
Query: 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNV 253
ISEWMGYFLLFENMLNTVLYARDKWLV+DGIVLPDKASLYLTAIEDAEYK+DKIEFWN+V
Sbjct: 195 ISEWMGYFLLFENMLNTVLYARDKWLVNDGIVLPDKASLYLTAIEDAEYKEDKIEFWNSV 254
Query: 254 YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT----------- 302
YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKM PGDASFT
Sbjct: 255 YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMAPGDASFTAPFKLVASRDD 314
Query: 303 ---------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAP 347
CHKL GFSTGP+SRATHWKQTVLYLEDVLTICEGE + GS+TVA
Sbjct: 315 YIHALVAYFDVSFTKCHKLTGFSTGPRSRATHWKQTVLYLEDVLTICEGETVVGSMTVAQ 374
Query: 348 NKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
NKKNPRDVDIM+KYS G+ +SR QYYKMR
Sbjct: 375 NKKNPRDVDIMIKYSFNGQRCQVSRTQYYKMR 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233606|ref|NP_194680.1| protein arginine N-methyltransferase 1 [Arabidopsis thaliana] gi|75208030|sp|Q9SU94.1|ANM11_ARATH RecName: Full=Protein arginine N-methyltransferase 1.1; Short=AtPRMT11; AltName: Full=Arginine methyltransferase pam1; AltName: Full=Histone-arginine N-methyltransferase PRMT11 gi|5123545|emb|CAB45311.1| arginine methyltransferase (pam1) [Arabidopsis thaliana] gi|7269850|emb|CAB79709.1| arginine methyltransferase (pam1) [Arabidopsis thaliana] gi|21593404|gb|AAM65371.1| arginine methyltransferase pam1 [Arabidopsis thaliana] gi|23297369|gb|AAN12952.1| arginine methyltransferase pam1 [Arabidopsis thaliana] gi|332660238|gb|AEE85638.1| protein arginine N-methyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/379 (73%), Positives = 308/379 (81%), Gaps = 35/379 (9%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------------------------ 302
MEPLVDTVDQNQIVT+ +LLKTMDISKM GDASFT
Sbjct: 252 MEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 303 --CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 360
CHKL+GFSTGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+DI L
Sbjct: 312 TMCHKLLGFSTGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLS 371
Query: 361 YSLQGRHSAISRIQYYKMR 379
YSL G+H ISR Q+YKMR
Sbjct: 372 YSLNGQHCKISRTQHYKMR 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501183|ref|XP_003620880.1| Arginine methyltransferease [Medicago truncatula] gi|355495895|gb|AES77098.1| Arginine methyltransferease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/374 (73%), Positives = 300/374 (80%), Gaps = 45/374 (12%)
Query: 34 RFADAEE--DDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGEDDKTSADYYFDSY 91
RF DA+E +D +S LD S+ CD +D +DKTSADYYFDSY
Sbjct: 13 RFEDADEVIEDVAETSNLDQSMGG------------CD-----LDDSNDKTSADYYFDSY 55
Query: 92 SHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV 151
SHFGIHEEMLKD VRTK+YQNVIYQN+FLFK+KVVLDVGAGTGILSLFCAKAGAAHVYAV
Sbjct: 56 SHFGIHEEMLKDTVRTKTYQNVIYQNRFLFKNKVVLDVGAGTGILSLFCAKAGAAHVYAV 115
Query: 152 ECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTV 211
ECS MA+ AK+IVE NG+S VITVLKGKIEE+ELPV KVDIIISEWMGYFLLFENMLN+V
Sbjct: 116 ECSHMADRAKEIVETNGYSKVITVLKGKIEELELPVPKVDIIISEWMGYFLLFENMLNSV 175
Query: 212 LYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLV 271
L+ARDKWLVDDG++LPD ASLYLTAIED +YK+DKIEFWNNVYGFDMSCIKKQA+MEPLV
Sbjct: 176 LFARDKWLVDDGVILPDIASLYLTAIEDKDYKEDKIEFWNNVYGFDMSCIKKQALMEPLV 235
Query: 272 DTVDQNQIVTNCQLLKTMDISKMGPGDASFT--------------------------CHK 305
DTVDQNQI TNCQLLK+MDISKM GD SFT CHK
Sbjct: 236 DTVDQNQIATNCQLLKSMDISKMSSGDCSFTAPFKLVAARDDFIHAFVAYFDVSFTKCHK 295
Query: 306 LMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 365
LMGFSTGP+SR+THWKQTVLYLEDVLTICEGE I GS+TVAPNKKNPRDVDIMLKYSL G
Sbjct: 296 LMGFSTGPRSRSTHWKQTVLYLEDVLTICEGETIVGSMTVAPNKKNPRDVDIMLKYSLNG 355
Query: 366 RHSAISRIQYYKMR 379
R SR+QYYKMR
Sbjct: 356 RRCNASRVQYYKMR 369
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738697|emb|CBI27942.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 266/326 (81%), Positives = 284/326 (87%), Gaps = 26/326 (7%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
DKTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIY+NKFLFK+KVVLDVGAGTGILSLF
Sbjct: 25 DKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGTGILSLF 84
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
CAKAGA HVYAVECS MA+MAK+IVE NGFS+VITV+KGK+EEI LPV +VDIIISEWMG
Sbjct: 85 CAKAGAKHVYAVECSHMADMAKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDIIISEWMG 144
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 259
YFLLFENMLNTVLYARDKWLV+DGIVLPDKASLYLTAIEDAEYK+DKIEFWN+VYGFDMS
Sbjct: 145 YFLLFENMLNTVLYARDKWLVNDGIVLPDKASLYLTAIEDAEYKEDKIEFWNSVYGFDMS 204
Query: 260 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT----------------- 302
CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKM PGDASFT
Sbjct: 205 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMAPGDASFTAPFKLVASRDDYIHALV 264
Query: 303 ---------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPR 353
CHKL GFSTGP+SRATHWKQTVLYLEDVLTICEGE + GS+TVA NKKNPR
Sbjct: 265 AYFDVSFTKCHKLTGFSTGPRSRATHWKQTVLYLEDVLTICEGETVVGSMTVAQNKKNPR 324
Query: 354 DVDIMLKYSLQGRHSAISRIQYYKMR 379
DVDIM+KYS G+ +SR QYYKMR
Sbjct: 325 DVDIMIKYSFNGQRCQVSRTQYYKMR 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 379 | ||||||
| TAIR|locus:2134328 | 390 | PRMT11 "arginine methyltransfe | 0.701 | 0.682 | 0.770 | 1.3e-107 | |
| TAIR|locus:2051995 | 366 | PRMT1A "protein arginine methy | 0.699 | 0.724 | 0.757 | 2.8e-105 | |
| UNIPROTKB|F6XFY9 | 371 | PRMT1 "Uncharacterized protein | 0.680 | 0.695 | 0.583 | 2e-98 | |
| UNIPROTKB|H7C2I1 | 371 | PRMT1 "Protein arginine N-meth | 0.680 | 0.695 | 0.583 | 2e-98 | |
| MGI|MGI:107846 | 371 | Prmt1 "protein arginine N-meth | 0.680 | 0.695 | 0.580 | 6.8e-98 | |
| UNIPROTKB|Q99873 | 361 | PRMT1 "Protein arginine N-meth | 0.670 | 0.703 | 0.585 | 1.4e-97 | |
| ZFIN|ZDB-GENE-030131-7791 | 419 | prmt8b "protein arginine methy | 0.591 | 0.534 | 0.633 | 3.7e-97 | |
| UNIPROTKB|E2R6B6 | 374 | PRMT1 "Uncharacterized protein | 0.680 | 0.689 | 0.577 | 4.7e-97 | |
| UNIPROTKB|Q5E949 | 353 | HRMT1L2 "HMT1 hnRNP methyltran | 0.627 | 0.674 | 0.619 | 9.8e-97 | |
| UNIPROTKB|Q8AV13 | 369 | prmt1-a "Protein arginine N-me | 0.641 | 0.658 | 0.604 | 1.6e-96 |
| TAIR|locus:2134328 PRMT11 "arginine methyltransferase 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 212/275 (77%), Positives = 236/275 (85%)
Query: 63 EDEAMCDADVSMIDGE--DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+DE+M DA S E DD TSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL
Sbjct: 46 QDESMFDAGESADTAEVTDDTTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFL 105
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKI
Sbjct: 106 IKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADMAKEIVKANGFSDVITVLKGKI 165
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELP KVD+IISEWMGYFLLFENML++VLYARDKWLV+ G+VLPDKASL+LTAIED+
Sbjct: 166 EEIELPTPKVDVIISEWMGYFLLFENMLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDS 225
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
EYK+DKIEFWN+VYGFDMSCIKK+AMMEPLVDTVDQNQIVT+ +LLKTMDISKM GDAS
Sbjct: 226 EYKEDKIEFWNSVYGFDMSCIKKKAMMEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDAS 285
Query: 301 FTC-HKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 334
FT KL+ R + V Y + T+C
Sbjct: 286 FTAPFKLVA------QRNDYIHALVAYFDVSFTMC 314
|
|
| TAIR|locus:2051995 PRMT1A "protein arginine methyltransferase 1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
Identities = 206/272 (75%), Positives = 232/272 (85%)
Query: 64 DEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
DE+M D D + D DD TSADYYFDSYSHFGIHEEMLKDVVRTKSYQ+VIY+NKFL KD
Sbjct: 25 DESMHDGDDNNADVADDITSADYYFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLIKD 84
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
K+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+ AK+IV++NGFS+VITVLKGKIEEI
Sbjct: 85 KIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADTAKEIVKSNGFSDVITVLKGKIEEI 144
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWLVD GIVLPDKASLY+TAIEDA YK
Sbjct: 145 ELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAHYK 204
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTC 303
DDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQIVT+ +LLKTMDISKM GDASFT
Sbjct: 205 DDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQIVTDSKLLKTMDISKMAAGDASFTA 264
Query: 304 -HKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 334
KL+ R H V Y + T+C
Sbjct: 265 PFKLVA------QRNDHIHALVAYFDVSFTMC 290
|
|
| UNIPROTKB|F6XFY9 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 153/262 (58%), Positives = 199/262 (75%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFT 302
TN L+K +DI + D +FT
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFT 268
|
|
| UNIPROTKB|H7C2I1 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 153/262 (58%), Positives = 199/262 (75%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFT 302
TN L+K +DI + D +FT
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFT 268
|
|
| MGI|MGI:107846 Prmt1 "protein arginine N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 796 (285.3 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
Identities = 152/262 (58%), Positives = 199/262 (75%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFT 302
TN L+K +DI + D +FT
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFT 268
|
|
| UNIPROTKB|Q99873 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
Identities = 151/258 (58%), Positives = 196/258 (75%)
Query: 49 LDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDV 104
+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEMLKD
Sbjct: 1 MENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDE 60
Query: 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164
VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV
Sbjct: 61 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 120
Query: 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224
+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG+
Sbjct: 121 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGL 180
Query: 225 VLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQ 284
+ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN
Sbjct: 181 IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNAC 240
Query: 285 LLKTMDISKMGPGDASFT 302
L+K +DI + D +FT
Sbjct: 241 LIKEVDIYTVKVEDLTFT 258
|
|
| ZFIN|ZDB-GENE-030131-7791 prmt8b "protein arginine methyltransferase 8b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 142/224 (63%), Positives = 180/224 (80%)
Query: 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSL 138
++ TS DYYFDSY+HFGIHEEMLKD VRT +Y+N +Y NK +FKDK+VLDVG+GTGILS+
Sbjct: 93 EEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHIFKDKIVLDVGSGTGILSM 152
Query: 139 FCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198
F AKAGA HVY +ECS ++ +++I+++N +VIT+LKGK+EE ELPV +VDIIISEWM
Sbjct: 153 FAAKAGAKHVYGIECSSISEYSEKIIKSNHLDSVITILKGKVEETELPVDQVDIIISEWM 212
Query: 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 258
GY L +E+MLNTV+YARDKWL G + PD+A+LY+ AIED +YKD KI +W NVYGFDM
Sbjct: 213 GYCLFYESMLNTVIYARDKWLKPGGFMFPDRATLYVVAIEDRQYKDFKIHWWENVYGFDM 272
Query: 259 SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT 302
+CI+ AMMEPLVD VD Q+VTN L+K +DI + D SFT
Sbjct: 273 TCIRNVAMMEPLVDIVDPKQVVTNSCLVKEVDIYTVKTEDLSFT 316
|
|
| UNIPROTKB|E2R6B6 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
Identities = 153/265 (57%), Positives = 199/265 (75%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYA---VECSQMA 157
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS ++
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGGPQIECSSIS 126
Query: 158 NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDK 217
+ A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDK
Sbjct: 127 DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDK 186
Query: 218 WLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQN 277
WL DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD
Sbjct: 187 WLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPK 246
Query: 278 QIVTNCQLLKTMDISKMGPGDASFT 302
Q+VTN L+K +DI + D +FT
Sbjct: 247 QLVTNACLIKEVDIYTVKVEDLTFT 271
|
|
| UNIPROTKB|Q5E949 HRMT1L2 "HMT1 hnRNP methyltransferase-like 2 isoform 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
Identities = 148/239 (61%), Positives = 185/239 (77%)
Query: 65 EAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
E C A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKD
Sbjct: 12 EVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKD 71
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
KVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+
Sbjct: 72 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 131
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG++ PD+A+LY+TAIED +YK
Sbjct: 132 ELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGLIFPDRATLYVTAIEDRQYK 191
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT 302
D KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT
Sbjct: 192 DYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFT 250
|
|
| UNIPROTKB|Q8AV13 prmt1-a "Protein arginine N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 1.6e-96, Sum P(2) = 1.6e-96
Identities = 147/243 (60%), Positives = 186/243 (76%)
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
T IED + + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+
Sbjct: 24 TPIEDVNSAPPEGGVKTNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 83
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK
Sbjct: 84 LFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGK 143
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED
Sbjct: 144 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIED 203
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
+YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V+N L+K +DI + D
Sbjct: 204 RQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDL 263
Query: 300 SFT 302
SFT
Sbjct: 264 SFT 266
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54EF2 | ANM1_DICDI | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5277 | 0.7862 | 0.8739 | yes | no |
| Q9URX7 | ANM1_SCHPO | 2, ., 1, ., 1, ., - | 0.5305 | 0.7519 | 0.8382 | yes | no |
| Q5RGQ2 | ANM8B_DANRE | 2, ., 1, ., 1, ., - | 0.5535 | 0.7941 | 0.7183 | yes | no |
| Q9JIF0 | ANM1_MOUSE | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5178 | 0.8839 | 0.9029 | yes | no |
| Q9SU94 | ANM11_ARATH | 2, ., 1, ., 1, ., 1, 2, 5 | 0.7308 | 0.9076 | 0.8820 | yes | no |
| Q99873 | ANM1_HUMAN | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5207 | 0.8733 | 0.9168 | yes | no |
| Q8AV13 | ANM1A_XENLA | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5317 | 0.8443 | 0.8672 | N/A | no |
| Q28F07 | ANM1_XENTR | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5272 | 0.8337 | 0.9002 | yes | no |
| O82210 | ANM12_ARATH | 2, ., 1, ., 1, ., - | 0.7558 | 0.8205 | 0.8497 | no | no |
| Q0J2C6 | ANM1_ORYSJ | 2, ., 1, ., 1, ., - | 0.7944 | 0.7915 | 0.7751 | yes | no |
| A2Z0C0 | ANM1_ORYSI | 2, ., 1, ., 1, ., - | 0.7944 | 0.7915 | 0.7751 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PRMT901 | SubName- Full=Putative uncharacterized protein; (378 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.I.4832.1 | hypothetical protein (422 aa) | • | 0.496 | ||||||||
| estExt_fgenesh4_pg.C_LG_XV0629 | hypothetical protein (314 aa) | • | 0.493 | ||||||||
| gw1.86.17.1 | hypothetical protein (573 aa) | • | 0.455 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 379 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-13 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-09 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 3e-09 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 1e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 4e-08 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 8e-07 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 1e-06 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 3e-06 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 3e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 4e-06 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-06 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 7e-06 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 8e-06 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 1e-05 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 2e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 4e-05 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 6e-05 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 6e-05 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 8e-05 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 9e-05 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 1e-04 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 1e-04 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 1e-04 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 2e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 4e-04 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 4e-04 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 5e-04 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 7e-04 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 9e-04 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 9e-04 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 0.002 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 0.002 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.002 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 0.002 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.004 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI-E 184
VLD+G GTG L+L A A V V+ S +A + A ++ + VLKG EE+
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
D+IIS L E++ + AR L G+++
Sbjct: 62 EADESFDVIIS-DPPLHHLVEDLARFLEEARRL-LKPGGVLV 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176
+ K +LD+GAG G L L A + A + VE + A MA++ V N I V+
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 177 KGKIEEIE--LPVTKVDIIIS 195
+ I+E L D+II
Sbjct: 101 EADIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 97 HEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-Q 155
H ++L+DV R + + I + + D+GAG+GILS+ A A A V A+E +
Sbjct: 11 HLDLLRDVERLAVFTSAIAE----VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPK 65
Query: 156 MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN---MLNTVL 212
A +A++ + G N V+ G + + D++I E + L+ E ++N VL
Sbjct: 66 RARLAEENLHVPGDVN-WEVVVGDARDYD--FENADVVICEMLDTALIEEKQVPVINAVL 122
Query: 213 YARDKWLVDDGIVLPDKA 230
++L D ++P +
Sbjct: 123 ----EFLRYDPTIIPQEV 136
|
Length = 252 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K + K VLDVG G+GIL++ AK GA V AV+ A A++ E NG + +
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174
Query: 177 KGKIEEIELPVTKVDIII 194
+G K D+I+
Sbjct: 175 QGD--------LKADVIV 184
|
Length = 250 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 179
VLD+G GTG L++ A+ A V V+ S +M +A++ + IT ++G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ + D + G +L+ + L G ++
Sbjct: 60 APDALDLLEGFDAVFI--GGGGGDLLELLDALA----SLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 120 LFKDKVVLDVGAGTGILSLFCA-KAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
L VLD+G GTG L+ A K G A V ++ S + AK+ + G+ NV +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENV-EFI 59
Query: 177 KGKIEEIE---LPVTKVDIIIS 195
+G IEE+ L D++IS
Sbjct: 60 QGDIEELPQLQLEDNSFDVVIS 81
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-08
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 123 DKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
VLD GAG+G L A+AG A V VE + A +A++ + G + + V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 181 EEI-ELPVTKVDIII-----SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
E+ ELP D+++ G ++ + L A + L G+++
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + VLDVG G+GIL++ K GA V V+ +A AK+ E NG + V
Sbjct: 156 SLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVY 215
Query: 177 KGKIEEIELPVTKVDIII 194
+LP K D+++
Sbjct: 216 LPG----DLPEGKADVVV 229
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
DK +LD+G G+G +++ AK G A V AV+ S A +A++ E NG V+ V
Sbjct: 110 LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169
Query: 180 IEEIELPVTKVDIIIS 195
E + K D+I+S
Sbjct: 170 FEPLR---GKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEE 182
K VLD+GAGTGIL++ A GA+ V AV+ + +A+ E G +E
Sbjct: 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---------GDVEF 97
Query: 183 IELPVTKVD 191
+ V+
Sbjct: 98 VVADVSDFR 106
|
Length = 198 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 179
+ D+GAGTG +++ A AG + V A+E + + ++ G N+ V++G
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNL-EVVEGD 92
Query: 180 IEEIELPVTKVDII 193
E + D I
Sbjct: 93 APEALPDLPSPDAI 106
|
Length = 187 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G GTG + A+AG + V V+ S+ +AK+ + G + + ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 185 LPVTKVDIIISEWMGYFLLFE 205
D++I
Sbjct: 59 FEEGSFDLVIC-AGLSLDYLS 78
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 127 LDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
LDVG GTG+L+ A+ G A V V+ +M +A++ + G E++
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-------APRKFVVGDAEDLPF 53
Query: 186 PVTKVDIIISEWM 198
P D+++S +
Sbjct: 54 PDESFDVVVSSLV 66
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K L K K VLDVG G+GIL++ AK GA V V+ A A++ NG ++
Sbjct: 158 KLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217
Query: 177 KGKIEEIELPVTKVDIII 194
+ E D+I+
Sbjct: 218 GFLLLE-VPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
VLD+G G G+L AK V V+ + A A+ + ANG N
Sbjct: 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDL 90
Query: 180 IEEIELPVTKVDIIIS 195
+E K D+IIS
Sbjct: 91 YSAVE--PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 125 VVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 181
VLD+G+G G A+ G V V+ + +M A+ G++NV G+IE
Sbjct: 80 TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIE 138
Query: 182 EIELPVTKVDIIIS 195
+ + VD+IIS
Sbjct: 139 ALPVADNSVDVIIS 152
|
Length = 272 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE 152
+ K KVVLD+G+ TG + + GA HVYAV+
Sbjct: 75 ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
|
Length = 245 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 116 QNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVI 173
+ K +F VLD+G GTG L+ K A A + + M AK + N +
Sbjct: 28 KEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN-----V 82
Query: 174 TVLKGKIEEIELPVTKVDIIIS 195
+ G E++ L + D+I+S
Sbjct: 83 QFICGDAEKLPLEDSSFDLIVS 104
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITV-L 176
KDK V+DVG G+GILS+ K GAA V ++ A++ E N S+ + V L
Sbjct: 156 LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215
Query: 177 KGKIEEIELPVTKVDIII 194
+ IE D+I+
Sbjct: 216 IYLEQPIEGK---ADVIV 230
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178
L + VLD+ G G L AK V+ VE S A++ ANG NV + G
Sbjct: 291 LAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDNV-EFIAG 348
Query: 179 KIEEI 183
EE
Sbjct: 349 DAEEF 353
|
Length = 432 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-05
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
VLD+G G+G ++L AK A V AV+ S A +A++ G NV L+
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV-EFLQSD 145
Query: 180 IEEIELPVTKVDIIIS 195
E LP K D+I+S
Sbjct: 146 WFE-PLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITV---LKGK 179
VV+DVGA G SL+ A+ GA V A E + ++ V+ N NV+ + + +
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 180 IEEIELPVT 188
E+E V+
Sbjct: 61 DGELEFNVS 69
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ VLD+G G+G ++L AK A V AV+ S A +A++ + + V L+G
Sbjct: 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARV-EFLQGD 166
Query: 180 IEEIELPVTKVDIIIS 195
E LP + D+I+S
Sbjct: 167 WFE-PLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQ 162
D VR ++ N++ F VLD+ AG+G L L GAA V VE + A
Sbjct: 26 DRVR-EALFNIL-APYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDK---KAVA 80
Query: 163 IVEAN----GFSNVITVLKGKIEEIELPVTK----VDIIISEWMGYFL-------LFENM 207
++ N G VL+ L + D++ FL L E
Sbjct: 81 TLKENLEALGLEGETAVLRNDAARALLRLAGKGPPFDLV-------FLDPPYAKGLIEEA 133
Query: 208 LNTVLYARDKWLVDDGIV 225
L + A + WL + ++
Sbjct: 134 LELL--AENGWLNPNALI 149
|
Length = 183 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS 170
K VL++ + TG S+ A GA+ V +V+ S+ A A++ E NG
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD 266
|
Length = 393 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+LD G G G LS+ A+ G A V A + S QM A++ G + IT G +
Sbjct: 63 TGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121
Query: 181 EEI 183
E +
Sbjct: 122 ESL 124
|
Length = 230 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHV------YAVECSQMANMAKQIVEANGFSN 171
K VL+VG G+GI+++ AK G V YAVEC AK + N N
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVEC------AKCNAKLNNIRN 72
|
Length = 188 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + + + VLD+ AG G S+ AK G VYA++ + A K+ + N + +
Sbjct: 184 ELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPI 243
Query: 177 KGKIEEIELPVTKVDIIISEWMGYF 201
G E+ + D II MG
Sbjct: 244 LGDAREVAPELGVADRII---MGLP 265
|
Length = 341 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVLKG 178
VL++G G G L+ AK A VYA+E ++A + + NV +++G
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRD--DEIAAGNV-EIIEG 82
Query: 179 KIEEIELPVTKVDIIIS 195
+++LP + + ++S
Sbjct: 83 DALKVDLP--EFNKVVS 97
|
Length = 258 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
+ VL+ G G+G L+ + A+A HV E A A++ + G + +T+
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151
Query: 177 KGKIEEIELPVTKVDIII 194
G + E VD +
Sbjct: 152 LGDVREGIDE-EDVDAVF 168
|
Length = 256 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 183
+LD+G G+G ++L A A V AV+ S A +A++ E N + + ++ + E
Sbjct: 118 ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE- 176
Query: 184 ELPVTKVDIIIS 195
L K+DII+S
Sbjct: 177 PLAGQKIDIIVS 188
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 9e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
K K K VLD G GTG+LS+ AK G A V AV+ S QM MA+ + + +
Sbjct: 51 KDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109
Query: 177 KGKIEEIE 184
+ +
Sbjct: 110 VNDLLSLC 117
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM-AKQIVEANGFSNVITV 175
+F VLDVG G GILS A+ G A V ++ S+ AK +G + I
Sbjct: 54 LRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN--IDY 110
Query: 176 LKGKIEEIELPVTKVDIIIS 195
+ +E++ + D++
Sbjct: 111 RQATVEDLASAGGQFDVVTC 130
|
Length = 243 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G G G L+++ A+ V V S+ A++ + A G + + V + E
Sbjct: 76 LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135
Query: 185 LPVTKVDIIIS----EWMG---YFLLFENMLNTVLYARDKWLVDDGIVL 226
D I+S E +G Y F+ + L G +L
Sbjct: 136 ---EPFDRIVSVGMFEHVGKENYDDFFKKV--------YALLKPGGRML 173
|
Length = 283 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVL 176
+ VLDV GTG ++L AK G V ++ M +A++ ++ G NV V+
Sbjct: 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107
Query: 177 KGKIEEIELP 186
G E + P
Sbjct: 108 -GDAENLPFP 116
|
Length = 238 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA 157
VLD+ G+G L++ A AGA V AV+ S+ A
Sbjct: 40 VLDLCTGSGALAVAAAAAGAGSVTAVDISRRA 71
|
Length = 223 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 127 LDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
LD+G GTG L +A V+ S A + + A G + + V ++ I+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225
L D+++ L VL + L G++
Sbjct: 61 LDPGSFDVVV---ASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 379 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.87 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.84 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.79 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.76 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.73 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.71 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.68 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.66 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.66 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.65 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.65 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.65 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.65 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.63 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.63 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.62 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.62 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.62 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.62 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.61 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.61 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.61 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.6 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.6 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.6 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.58 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.57 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.57 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.56 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.56 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.55 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.55 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.55 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.55 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.54 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.54 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.54 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.53 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.53 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.52 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.52 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.5 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.49 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.49 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.49 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.49 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.49 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.49 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.49 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.49 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.48 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.48 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.48 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.48 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.47 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.46 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.46 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.46 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.45 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.45 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.45 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.43 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.43 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.43 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.43 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.43 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.42 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.42 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.41 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.41 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.4 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.4 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.39 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.39 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.39 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.38 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.38 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.38 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.37 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.37 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.37 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.36 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.36 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.35 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.35 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.35 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.35 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.34 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.34 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.34 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.34 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.33 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.33 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.33 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.32 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.32 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.31 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.31 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.31 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.31 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.28 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.28 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.28 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.28 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.27 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.27 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.26 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 99.26 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.26 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.26 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.26 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.26 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.26 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.24 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.24 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.24 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.23 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.22 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.21 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.2 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.2 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.2 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.2 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.2 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.19 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.18 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.18 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.17 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.17 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.16 | |
| PLN02476 | 278 | O-methyltransferase | 99.16 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.15 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.14 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.13 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.13 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.11 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.1 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.09 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.09 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.07 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.06 | |
| PLN02366 | 308 | spermidine synthase | 99.06 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.05 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.04 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.02 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.02 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.01 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.0 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.99 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.97 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.97 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.97 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.96 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.96 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.92 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.92 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.91 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.91 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.89 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.89 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.88 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.85 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.85 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.84 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.83 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.82 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.81 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.79 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.77 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.74 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.74 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.74 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.73 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.72 | |
| PLN02823 | 336 | spermine synthase | 98.72 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.72 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.72 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.7 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.67 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.67 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.65 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.64 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.63 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.63 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.62 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.62 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.62 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.61 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.6 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.58 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.57 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.56 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.56 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.54 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.5 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.49 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.47 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.47 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.44 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.44 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.43 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.43 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.42 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.39 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.38 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 98.37 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.36 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.35 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.29 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.24 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.24 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.2 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.2 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.15 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.13 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.13 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.08 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.05 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.03 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.01 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.98 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.94 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.94 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.93 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.93 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.9 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.87 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.84 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.81 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.78 | |
| PHA01634 | 156 | hypothetical protein | 97.74 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.73 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.73 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.7 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.63 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.61 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.58 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.52 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.52 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.49 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.46 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.44 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.4 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.4 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.39 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.31 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.26 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 97.21 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.18 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.11 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.05 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.92 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.8 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.71 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.7 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.65 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.59 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.58 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.56 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.52 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.21 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.13 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.05 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.04 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.03 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.02 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.0 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.96 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.95 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.78 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.74 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.49 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.48 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.08 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 94.97 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.85 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 94.67 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.64 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.57 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.54 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 94.35 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 94.26 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.21 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.16 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.83 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.83 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.63 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.62 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.5 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 93.4 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.35 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.23 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.16 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 93.11 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.88 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 92.75 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 92.71 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 92.6 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 92.36 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 92.31 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.26 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 92.11 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.09 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 92.04 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 92.02 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 92.01 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 91.51 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.35 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.3 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.15 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.06 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 91.04 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.02 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.9 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 90.89 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.84 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 90.55 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 90.45 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 90.34 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 90.32 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 89.75 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 89.29 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 89.19 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 89.02 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 88.86 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.85 | |
| PLN02494 | 477 | adenosylhomocysteinase | 88.65 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.96 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.93 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 87.86 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.63 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 87.58 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 87.32 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.17 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.91 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.85 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 86.77 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 86.56 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 86.41 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 86.34 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 86.09 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 86.05 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.82 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 85.79 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 85.72 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.61 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.43 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.37 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 85.35 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 85.33 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 85.25 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.17 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 84.95 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 84.93 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 84.91 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 84.81 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 84.74 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 84.7 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 84.35 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.24 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 84.06 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 84.0 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 83.94 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 83.75 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.71 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 83.59 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 83.59 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 83.4 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.33 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 83.2 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 83.16 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 82.92 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 82.61 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 82.43 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 82.34 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 82.19 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 81.94 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 81.91 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 81.82 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 81.74 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 81.4 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 81.37 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 81.13 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 81.13 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 80.9 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 80.75 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 80.63 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 80.2 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.09 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-58 Score=417.68 Aligned_cols=301 Identities=64% Similarity=1.062 Sum_probs=288.3
Q ss_pred CCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHH
Q 016992 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN 158 (379)
Q Consensus 79 ~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~ 158 (379)
......+.||+.|++++.|..||+|..|+.+|+.++.++....++++|||+|||||.+++++|++|+++|+|||.|.+++
T Consensus 17 ~d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~ 96 (346)
T KOG1499|consen 17 KDMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIAD 96 (346)
T ss_pred cccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHH
Confidence 34446689999999999999999999999999999999999999999999999999999999999999999999999779
Q ss_pred HHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEee
Q 016992 159 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (379)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (379)
.|++.+..|++.+.|+++++.++++.+|.+++|+|+++||||+|.++.++..+|.+..++|+|||.++|+.+++++++++
T Consensus 97 ~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~ 176 (346)
T KOG1499|consen 97 FARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIE 176 (346)
T ss_pred HHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEecc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe----------------
Q 016992 239 DAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------- 302 (379)
Q Consensus 239 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~---------------- 302 (379)
...+...+..+|.++|||||+.+......+|+.+.+++.+++++|+.+.++|+.++..+++.|+
T Consensus 177 d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~ 256 (346)
T KOG1499|consen 177 DDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAF 256 (346)
T ss_pred CchhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999888765
Q ss_pred ----------cC--CcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcce-eee
Q 016992 303 ----------CH--KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR-HSA 369 (379)
Q Consensus 303 ----------~~--~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 369 (379)
|+ ..+.+||+|..+.|||+|+||+|++|+.|+.|+.|.+++++++++.++|++++.++|+.+++ ..+
T Consensus 257 v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~ 336 (346)
T KOG1499|consen 257 VAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLCS 336 (346)
T ss_pred EEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCccccc
Confidence 44 67999999999999999999999999999999999999999999999999999999999999 677
Q ss_pred eeceEEeeeC
Q 016992 370 ISRIQYYKMR 379 (379)
Q Consensus 370 ~~~~~~~~~~ 379 (379)
++.++.|+|+
T Consensus 337 ~~~~~~y~~~ 346 (346)
T KOG1499|consen 337 FSESDSYPMR 346 (346)
T ss_pred cccccccccC
Confidence 9999999986
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=276.25 Aligned_cols=280 Identities=40% Similarity=0.667 Sum_probs=242.0
Q ss_pred CccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHH
Q 016992 81 KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160 (379)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a 160 (379)
......||..|+.+.....|+.|..|+..|.++|.++.....++.|||+|||+|+++++++++|+++|++||.|.|.+.|
T Consensus 136 esSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA 215 (517)
T KOG1500|consen 136 ESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYA 215 (517)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHH
Confidence 34446799999888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecc
Q 016992 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240 (379)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 240 (379)
++.++.|.+.++|.++.+.++++.+| +++|+||+++|++.|.++.+++..+.+. ++|||.|.++|....++++|+.++
T Consensus 216 ~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 216 RKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDE 293 (517)
T ss_pred HHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchH
Confidence 99999999999999999999999999 9999999999999999999999999887 999999999999999999999988
Q ss_pred ccccc---cccccc--ccccccchhhhhhh----ccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCce-------Ee--
Q 016992 241 EYKDD---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-------FT-- 302 (379)
Q Consensus 241 ~~~~~---~~~~w~--~~~g~~~~~~~~~~----~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~-------f~-- 302 (379)
.++.+ +..||. ..||.|++.+.... +.+|.++.+++.-++..+ ....+||.....+++. |.
T Consensus 294 ~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedlh~i~iPlkF~~~ 372 (517)
T KOG1500|consen 294 QLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDLHEIDIPLKFHAL 372 (517)
T ss_pred HHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc-hHhhhhhhhcccchheeecccceehhh
Confidence 77654 456785 48999998765433 678999999888776643 4566788877776652 22
Q ss_pred ----cC--------------CcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEc
Q 016992 303 ----CH--------------KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 364 (379)
Q Consensus 303 ----~~--------------~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (379)
+| -.++++|+|..|.+||-|....|..||.|.+|++|++++.+..++... ++|.+..+..
T Consensus 373 ~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QS--Y~i~i~l~~~ 450 (517)
T KOG1500|consen 373 QCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQS--YDITITLSAK 450 (517)
T ss_pred hhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccc--eeEEEEEEee
Confidence 22 246799999999999999999999999999999999999999888664 5555554443
Q ss_pred c
Q 016992 365 G 365 (379)
Q Consensus 365 ~ 365 (379)
.
T Consensus 451 ~ 451 (517)
T KOG1500|consen 451 M 451 (517)
T ss_pred e
Confidence 3
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=285.66 Aligned_cols=252 Identities=33% Similarity=0.481 Sum_probs=195.5
Q ss_pred hhHHhhcCHHHHHHHHHHHHhccCC----C----CCCEEEEEcCCCchHHHHHHHcC-----CCEEEEEecHH-HHHHHH
Q 016992 96 IHEEMLKDVVRTKSYQNVIYQNKFL----F----KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECSQ-MANMAK 161 (379)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~----~----~~~~VLDlGcG~G~~~~~la~~g-----~~~v~~vD~s~-~~~~a~ 161 (379)
.+..+.+|..++..|.++|.+++.. . ++.+|||||||+|.++..+++++ +.+|+|||.|+ ++...+
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 3455778999999999998765321 1 35789999999999999988865 67999999999 888888
Q ss_pred HHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeeccc
Q 016992 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (379)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (379)
+.+..+++.++|+++++|++++.++ +++|+||||+||+++.+| ..+.+|.++.++|||||++||+.+++|++|+.++.
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 8889999999999999999999988 799999999999999887 55678999999999999999999999999999987
Q ss_pred ccccccccccccccccchhhhhhhccCceEEeeCCCcccCCC-eeeEeeeCCCCCC---CCc------eEe---------
Q 016992 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMGP---GDA------SFT--------- 302 (379)
Q Consensus 242 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~l~~~df~~~~~---~~~------~f~--------- 302 (379)
++.+....|. ...+..|++..+.+...++.+ ..+++|++.+... .+. +|+
T Consensus 310 l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhG 378 (448)
T PF05185_consen 310 LYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHG 378 (448)
T ss_dssp HHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEE
T ss_pred HHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEE
Confidence 7665433322 334678888888888888888 8899988876552 222 232
Q ss_pred --------cCCcEEEecCCCC----CCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 016992 303 --------CHKLMGFSTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 365 (379)
Q Consensus 303 --------~~~~~~lst~P~~----~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (379)
+.+++.|||+|.. +.+||+|++|||++|+.|++|++|+++++++.+. ..||++|.+++
T Consensus 379 fagwFd~~Ly~~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~-----~~vWYEW~v~s 448 (448)
T PF05185_consen 379 FAGWFDAVLYGDVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDD-----RKVWYEWSVES 448 (448)
T ss_dssp EEEEEEEEEECSEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCS-----TCEEEEEEEEE
T ss_pred EEEEEEEEeeCCeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCC-----CcEEEEEEEeC
Confidence 4578999999987 6799999999999999999999999999976553 33999999864
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=184.12 Aligned_cols=249 Identities=22% Similarity=0.313 Sum_probs=191.7
Q ss_pred HhhcCHHHHHHHHHHHHhccCCC-----C--CCEEEEEcCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHH
Q 016992 99 EMLKDVVRTKSYQNVIYQNKFLF-----K--DKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVE 165 (379)
Q Consensus 99 ~~l~d~~r~~~~~~~i~~~~~~~-----~--~~~VLDlGcG~G~~~~~la~~-----g~~~v~~vD~s~-~~~~a~~~~~ 165 (379)
.+-.|...+..|.++|.+++... . -.+|+-+|+|.|-+.....++ ..-++++||.++ ++-..+. ..
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n 415 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RN 415 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hc
Confidence 35567778888888887654322 1 236899999999776655442 124899999999 7766654 44
Q ss_pred HcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeeccccccc
Q 016992 166 ANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245 (379)
Q Consensus 166 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~ 245 (379)
...+.++|+++.+|++.+..+.++.|++|++++|++..+| .-+.+|+.+.++|||+|+.||+.++.|++|+.+..++++
T Consensus 416 ~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNE-LSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~ 494 (649)
T KOG0822|consen 416 FECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNE-LSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQE 494 (649)
T ss_pred hhhhcCeeEEEeccccccCCchhhccchHHHhhccccCcc-CCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHH
Confidence 4566689999999999998666899999999999988775 346899999999999999999999999999999877754
Q ss_pred ccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCC-------CCCCceEe----------------
Q 016992 246 KIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKM-------GPGDASFT---------------- 302 (379)
Q Consensus 246 ~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~-------~~~~~~f~---------------- 302 (379)
.... .. ...++.+++..+.....|++|+.+++|..-+. ....++|+
T Consensus 495 v~a~-~~----------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~ 563 (649)
T KOG0822|consen 495 VKAT-ND----------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDA 563 (649)
T ss_pred HHhc-CC----------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhh
Confidence 3221 00 12467788888888888888888888754332 22233454
Q ss_pred -cCCcEEEecCCCCCC---CCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 016992 303 -CHKLMGFSTGPKSRA---THWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 365 (379)
Q Consensus 303 -~~~~~~lst~P~~~~---~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (379)
+..+|.||+.|.+.+ .+|++++|||++|+.|.+|++|+++++...+. ..||++|.++.
T Consensus 564 ~LYkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~-----~kVWYEW~v~~ 625 (649)
T KOG0822|consen 564 VLYKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDS-----TKVWYEWSVES 625 (649)
T ss_pred hhhheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCC-----ceeEEEEEeee
Confidence 567999999997653 69999999999999999999999999976533 44999999984
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=167.15 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=104.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
...|.+.+.......+|.+|||||||||.+++.+++ .|.++|+|+|+|+ |++.|+++....++.+ |+|+++|++++|
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP 114 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP 114 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC
Confidence 346677677666666899999999999999999999 5778999999999 9999999999988866 999999999999
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++++||+|. +.+++.+..+++++|+++.|+|||||+++
T Consensus 115 f~D~sFD~vt---~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 115 FPDNSFDAVT---ISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCCCccCEEE---eeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 9999999999 46789999999999999999999999877
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=168.85 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=84.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (379)
.|++.+.+.....+|.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|++++...+.. +|+++++|++++++
T Consensus 34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence 44444555556678999999999999999999884 3 36999999999 999999999998875 79999999999999
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++++||+|++ .+++.+..++...++++.|+|||||+++
T Consensus 113 ~d~sfD~v~~---~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 113 PDNSFDAVTC---SFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp -TT-EEEEEE---ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred CCCceeEEEH---HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 9999999996 4567777889999999999999999987
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-20 Score=160.44 Aligned_cols=154 Identities=22% Similarity=0.267 Sum_probs=121.3
Q ss_pred ccCCCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCC
Q 016992 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146 (379)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~ 146 (379)
+.+++..++++|+.++ ..||+...++..-+.+ +..|...+.+.+... ...+|.+|||+|||-|.++..+|+.|+
T Consensus 9 ~~~id~~e~~~F~~la--~~wwd~~g~f~~LH~~--N~~rl~~i~~~~~~~-~~l~g~~vLDvGCGgG~Lse~mAr~Ga- 82 (243)
T COG2227 9 TQNVDYKELDKFEALA--SRWWDPEGEFKPLHKI--NPLRLDYIREVARLR-FDLPGLRVLDVGCGGGILSEPLARLGA- 82 (243)
T ss_pred cccCCHHHHHHHHHHH--hhhcCCCCceeeeeee--ccchhhhhhhhhhcc-cCCCCCeEEEecCCccHhhHHHHHCCC-
Confidence 4567778888988888 7899888776533322 122222222222211 126899999999999999999999995
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEE
Q 016992 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 147 ~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
.|+|+|+++ +++.|+..+...|+. |.+.+..++++....++||+|+|- ..+.|.+++..+++++.+++||||.+
T Consensus 83 ~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm---EVlEHv~dp~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 83 SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM---EVLEHVPDPESFLRACAKLVKPGGIL 157 (243)
T ss_pred eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEh---hHHHccCCHHHHHHHHHHHcCCCcEE
Confidence 999999999 999999999999974 889999999987666899999994 34677789999999999999999999
Q ss_pred EecCCc
Q 016992 226 LPDKAS 231 (379)
Q Consensus 226 ip~~~~ 231 (379)
+.++..
T Consensus 158 f~STin 163 (243)
T COG2227 158 FLSTIN 163 (243)
T ss_pred EEeccc
Confidence 977654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=162.70 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=119.1
Q ss_pred cCCCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhcc-------CCCCCCEEEEEcCCCchHHHHH
Q 016992 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-------FLFKDKVVLDVGAGTGILSLFC 140 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~-------~~~~~~~VLDlGcG~G~~~~~l 140 (379)
..++..++.+++.++ +.||+....+.....| +..|...+.+.+.+.. ...++.+|||||||+|.++..+
T Consensus 74 ~s~~~~e~~~f~~~a--~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 74 TSLNEDELAKFSAIA--DTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 356777888888887 5899988776654444 3344444444333221 1246779999999999999999
Q ss_pred HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcc
Q 016992 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 219 (379)
Q Consensus 141 a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L 219 (379)
++.|. +|+|||+++ +++.|++++...+...+|+++++|++++++++++||+|++.. .+.|..++..++.++.++|
T Consensus 150 a~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~---vLeHv~d~~~~L~~l~r~L 225 (322)
T PLN02396 150 ARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE---VIEHVANPAEFCKSLSALT 225 (322)
T ss_pred HHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh---HHHhcCCHHHHHHHHHHHc
Confidence 98765 999999999 999999887766655679999999999887668999999854 3555578889999999999
Q ss_pred cCCEEEEecC
Q 016992 220 VDDGIVLPDK 229 (379)
Q Consensus 220 kpgG~lip~~ 229 (379)
||||.++..+
T Consensus 226 kPGG~liist 235 (322)
T PLN02396 226 IPNGATVLST 235 (322)
T ss_pred CCCcEEEEEE
Confidence 9999998653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=135.72 Aligned_cols=107 Identities=28% Similarity=0.345 Sum_probs=89.7
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eeccCCCCceeEEEEec-
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 197 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv~~~- 197 (379)
|+.+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|++++...+..++|+++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 4566999999999 9999999998888889999999999 444443 7899999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
....+........+++.+.+.|+|||+++..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23334434667889999999999999998653
|
... |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=159.39 Aligned_cols=228 Identities=24% Similarity=0.329 Sum_probs=169.8
Q ss_pred hHHhhcCHHHHHHHHHHHHhccCCCCC------CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC
Q 016992 97 HEEMLKDVVRTKSYQNVIYQNKFLFKD------KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF 169 (379)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~~------~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~ 169 (379)
+..|++|..|+.+|+..|.......+. ..|||||+|||.+++++++.|+..|+|+|.-. |++.|++....+|+
T Consensus 35 y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 35 YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 345999999999999999876543322 26999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccccccccc
Q 016992 170 SNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 248 (379)
Q Consensus 170 ~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~ 248 (379)
+++|+++.....++... ..+.|+++.+.+..-+.+++.++.+-.+..++++||...+|.++++|++++++..+..
T Consensus 115 SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~---- 190 (636)
T KOG1501|consen 115 SDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN---- 190 (636)
T ss_pred ccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh----
Confidence 99999999988887654 3458999999888888999999999999999999999999999999999999875542
Q ss_pred cccccccccchhhhhhh---------ccCc------eEEee-CCCcccCCCeeeEeeeCCCCCCCC--ce----------
Q 016992 249 FWNNVYGFDMSCIKKQA---------MMEP------LVDTV-DQNQIVTNCQLLKTMDISKMGPGD--AS---------- 300 (379)
Q Consensus 249 ~w~~~~g~~~~~~~~~~---------~~~~------~~~~~-~~~~~ls~p~~l~~~df~~~~~~~--~~---------- 300 (379)
|.+.....-..-.... ...+ +.+.. ..-++|+++..++.+||..-.... ..
T Consensus 191 -~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~S 269 (636)
T KOG1501|consen 191 -LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHS 269 (636)
T ss_pred -hhccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccc
Confidence 2222211111000000 0000 11111 133579999999999998422211 10
Q ss_pred ---------E----ecCCcEEEecCCCCCC---------CCeeeEEEEcCC
Q 016992 301 ---------F----TCHKLMGFSTGPKSRA---------THWKQTVLYLED 329 (379)
Q Consensus 301 ---------f----~~~~~~~lst~P~~~~---------~~W~q~~~~l~~ 329 (379)
| ...+.+.+..+|.+.. .||.|+++++++
T Consensus 270 g~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 270 GPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred cchhheeeeeeeeeccCcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence 0 0335567777886532 599999999984
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=145.54 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=102.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC------CEEEEEecHH-HHHHHHHHHHHcCCCCc--EEEEEc
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA------AHVYAVECSQ-MANMAKQIVEANGFSNV--ITVLKG 178 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~------~~v~~vD~s~-~~~~a~~~~~~~~~~~~--i~~~~~ 178 (379)
.|.+.....+...++.+|||++||||.++..+.+. +. ++|+.+|+|+ |++.++++..+.++... +.++++
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 45555666677788999999999999999999883 44 7999999999 99999999988887655 999999
Q ss_pred ceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 179 d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|++++++++.+||..+ +.+++.+..++++.+++.+|+|||||+|.
T Consensus 167 dAE~LpFdd~s~D~yT---iafGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYT---IAFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CcccCCCCCCcceeEE---EecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999999 56889999999999999999999999887
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-18 Score=148.68 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=112.1
Q ss_pred CCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhcc-CCCC------CCEEEEEcCCCchHHHHHHH
Q 016992 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-FLFK------DKVVLDVGAGTGILSLFCAK 142 (379)
Q Consensus 70 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~-~~~~------~~~VLDlGcG~G~~~~~la~ 142 (379)
++..++.++..++ ..||+.-..+.....| +..|.....+-+.... ...| |++|||+|||+|+++..+|+
T Consensus 34 i~~~eV~~f~~la--~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLAr 109 (282)
T KOG1270|consen 34 IDVDEVKKFQALA--FTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLAR 109 (282)
T ss_pred ccHHHHHHHHHhc--ccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHh
Confidence 3445566666666 6788877766554444 4555555555555544 1233 47899999999999999999
Q ss_pred cCCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHH
Q 016992 143 AGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARD 216 (379)
Q Consensus 143 ~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~ 216 (379)
.|+ .|+|||+++ |++.|++........+ ++++.+.+++.+. ++||.|+|.- .+.|..+++.+++.+.
T Consensus 110 lga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse---vleHV~dp~~~l~~l~ 182 (282)
T KOG1270|consen 110 LGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE---VLEHVKDPQEFLNCLS 182 (282)
T ss_pred hCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH---HHHHHhCHHHHHHHHH
Confidence 986 999999999 9999999965544332 3778888888775 5699999853 3677789999999999
Q ss_pred hcccCCEEEEecC
Q 016992 217 KWLVDDGIVLPDK 229 (379)
Q Consensus 217 ~~LkpgG~lip~~ 229 (379)
++|||||.++.++
T Consensus 183 ~~lkP~G~lfitt 195 (282)
T KOG1270|consen 183 ALLKPNGRLFITT 195 (282)
T ss_pred HHhCCCCceEeee
Confidence 9999999998654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=143.11 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=93.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHH--cCCCCcEEEEEcceeec
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFSNVITVLKGKIEEI 183 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~--~~~~~~i~~~~~d~~~~ 183 (379)
.|.+.+.+.....++.+|||+|||+|.++..+++. + ..+|+|+|+|+ |++.|+++... .+...+++++++|++++
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 34444444455678899999999999999998884 4 36999999999 99999877542 22224699999999999
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++++++||+|++.. .+++..++..++.++.++|||||.++..
T Consensus 140 p~~~~sfD~V~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 140 PFDDCYFDAITMGY---GLRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCCEeEEEEec---ccccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 99888999999754 3555578899999999999999998743
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=128.56 Aligned_cols=102 Identities=31% Similarity=0.384 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCCchHHHHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la-~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~ 195 (379)
.++.+|||+|||+|.++..++ +. +..+|+|+|+|+ |++.|+++++.++++ +++++++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 467899999999999999999 44 357999999999 999999999999996 7999999999977 55 79999999
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+. .+..+...+++.+.++|++||.++.
T Consensus 80 ~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 80 NGVL---HHFPDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp ESTG---GGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCch---hhccCHHHHHHHHHHHcCCCcEEEE
Confidence 7653 4447788999999999999999984
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-16 Score=118.94 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=79.3
Q ss_pred EEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCCh
Q 016992 127 LDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 205 (379)
Q Consensus 127 LDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~ 205 (379)
||+|||+|..+..+++.+..+|+++|+++ +++.++++.... ++.++++|++++++++++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 89999999999999998667999999999 999999987653 4669999999999999999999987654444
Q ss_pred hhHHHHHHHHHhcccCCEEEEe
Q 016992 206 NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 206 ~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7889999999999999999873
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=145.37 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..+++....+|+|||+|+ |++.|++++...++.++++++++|+.++++++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~- 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES- 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence 57889999999999999999985334999999999 9999999999998877899999999999888899999998543
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.|..+...++.++.++|||||.++..
T Consensus 196 --~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 196 --GEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred --hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 344467789999999999999999853
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=131.52 Aligned_cols=98 Identities=24% Similarity=0.299 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|..++.+++ .+..+|+++|.++ |++.|+++++.+++++ ++++++|+.++.. .++||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~~ 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRAV 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEccc
Confidence 4588999999999999999987 4567999999999 9999999999999865 9999999998876 579999998642
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..++.++..+.++|+|||.+++
T Consensus 122 -------~~~~~~l~~~~~~LkpGG~lv~ 143 (187)
T PRK00107 122 -------ASLSDLVELCLPLLKPGGRFLA 143 (187)
T ss_pred -------cCHHHHHHHHHHhcCCCeEEEE
Confidence 4567899999999999999984
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-15 Score=145.01 Aligned_cols=262 Identities=19% Similarity=0.225 Sum_probs=170.8
Q ss_pred hHHhhcCHHHHHHHHHHHHhccCC------------------------------C---CCCEEEEEcCCCchHHHHHHH-
Q 016992 97 HEEMLKDVVRTKSYQNVIYQNKFL------------------------------F---KDKVVLDVGAGTGILSLFCAK- 142 (379)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~------------------------------~---~~~~VLDlGcG~G~~~~~la~- 142 (379)
++.+-.|...++.|.++|.+.+.. . ...+|+-+|+|.|-|...+.+
T Consensus 642 YEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrA 721 (1072)
T PTZ00357 642 YEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHA 721 (1072)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHH
Confidence 334567778888888888765410 0 013689999999977554433
Q ss_pred ---cCC-CEEEEEecHH-HHHHHHHHH-HHcCC-------CCcEEEEEcceeeccCCC-----------CceeEEEEecC
Q 016992 143 ---AGA-AHVYAVECSQ-MANMAKQIV-EANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEWM 198 (379)
Q Consensus 143 ---~g~-~~v~~vD~s~-~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-----------~~~D~Iv~~~~ 198 (379)
.|. -+|++||.++ .+.....+. ....| .++|+++..|+..+..+. +++|+||||++
T Consensus 722 ak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELL 801 (1072)
T PTZ00357 722 VSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELL 801 (1072)
T ss_pred HHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhh
Confidence 233 4899999996 544444332 22344 346999999999985431 37999999999
Q ss_pred ccccCChhhHHHHHHHHHhcccC----CE-------EEEecCCceEEEEeecccccccccccccccccccchh-----hh
Q 016992 199 GYFLLFENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSC-----IK 262 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkp----gG-------~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-----~~ 262 (379)
|+|..+|- -+.+|+.+.+.||+ +| +.||+.++.|++|+.+..++...... ...|+-... ..
T Consensus 802 GSFGDNEL-SPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~--~~~gltvP~p~c~~~h 878 (1072)
T PTZ00357 802 GSLGDNEL-SPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA--AVKGLTVPPPGCHDHH 878 (1072)
T ss_pred cccccccC-CHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh--hhcccccCCccccccc
Confidence 99887754 46888888888875 55 58999999999999998776542110 001111100 00
Q ss_pred hhhccCceEEeeCCCcccCCCeeeEeeeCCCCC-----------------------CCCceEe-----------------
Q 016992 263 KQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMG-----------------------PGDASFT----------------- 302 (379)
Q Consensus 263 ~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~-----------------------~~~~~f~----------------- 302 (379)
...+..+++..+.....++.|..+++|..-+.. ...+.|+
T Consensus 879 aa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAv 958 (1072)
T PTZ00357 879 AALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAV 958 (1072)
T ss_pred hhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEE
Confidence 112345566666666667788888888764332 1122343
Q ss_pred cCCc-----EEEecCCCCCC---CCeeeEEEEcC---CceecCCCC---------EEEEEEEEeeCCCCCceEEEEEEEE
Q 016992 303 CHKL-----MGFSTGPKSRA---THWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLKYS 362 (379)
Q Consensus 303 ~~~~-----~~lst~P~~~~---~~W~q~~~~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~~~~~~~~~~~ 362 (379)
+.++ +.|||.|...+ -+|++.+|||+ ++..++.|+ .|.+.+....+-...| ||++|+
T Consensus 959 LYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~r---VwYew~ 1035 (1072)
T PTZ00357 959 LYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQR---VWYEWS 1035 (1072)
T ss_pred eecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccce---EEEEEE
Confidence 3455 77999997654 48999999998 676777776 5555555433324444 889998
Q ss_pred Ec
Q 016992 363 LQ 364 (379)
Q Consensus 363 ~~ 364 (379)
+.
T Consensus 1036 v~ 1037 (1072)
T PTZ00357 1036 VT 1037 (1072)
T ss_pred Ee
Confidence 64
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=136.72 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=97.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
...+.+.+.......++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.|++++...++ ++++++++|+.++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 3445555666666778899999999999999999884 3 46999999999 99999999988887 5699999999998
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++++++||+|++.. .+.+..+...++.++.++|+|||.++.
T Consensus 109 ~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 109 PFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 87778999999754 344446778999999999999999874
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=148.20 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=105.7
Q ss_pred ccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHH
Q 016992 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MAN 158 (379)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~ 158 (379)
.....|..++...+....++ +.......+|.+|||+|||+|..+.++++. +.++|+|+|+++ +++
T Consensus 209 ~~~~~~~~G~~~~Qd~~s~~------------~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~ 276 (431)
T PRK14903 209 NDSRVIKDGLATVQGESSQI------------VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ 276 (431)
T ss_pred ccChHHHCCeEEEECHHHHH------------HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence 33355666665544433332 222345678999999999999999999984 356999999999 999
Q ss_pred HHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCccccCCh---h----------------hHHHHHHHHHhc
Q 016992 159 MAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFE---N----------------MLNTVLYARDKW 218 (379)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~---~----------------~~~~~l~~~~~~ 218 (379)
.+++++++.|+. +++++++|+..++ ...++||.|+++++++++... + ....+|.++.++
T Consensus 277 ~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 277 LVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred HHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999985 5999999998775 234789999999877654321 1 125678899999
Q ss_pred ccCCEEEEecCCce
Q 016992 219 LVDDGIVLPDKASL 232 (379)
Q Consensus 219 LkpgG~lip~~~~~ 232 (379)
|||||.+++++|++
T Consensus 356 LkpGG~LvYsTCs~ 369 (431)
T PRK14903 356 LEKGGILLYSTCTV 369 (431)
T ss_pred cCCCCEEEEEECCC
Confidence 99999999998885
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=131.26 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|..+..+++.|. +|+|+|+|+ |++.+++++...++. ++++++.|+.+++++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~ 103 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDFILSTV 103 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCEEEEec
Confidence 345678999999999999999999865 999999999 999999999998884 589999999887765 6799999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+++ .......++.++.++|+|||.++
T Consensus 104 ~~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 104 VLMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred chhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 54433 34567899999999999999965
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=147.75 Aligned_cols=116 Identities=17% Similarity=0.085 Sum_probs=95.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCce
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~ 190 (379)
....+|.+|||+|||+|..+.++++. + .++|+|+|+++ +++.++++++++|+. +|+++++|+.++. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccC
Confidence 45678899999999999999999984 3 46999999999 999999999999995 5999999998775 234689
Q ss_pred eEEEEecCccccCC---hh---------h-------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYFLLF---EN---------M-------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~l~~---~~---------~-------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|.|++++++++... .+ . ...++.++.++|||||.+++++|+++-
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99999987765321 11 1 357899999999999999998888643
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=137.62 Aligned_cols=139 Identities=16% Similarity=0.028 Sum_probs=106.0
Q ss_pred cchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHH
Q 016992 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANM 159 (379)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~ 159 (379)
....|..++...+....|+ ....+...+|.+|||+|||+|..+..+++. + .+.|+++|+++ +++.
T Consensus 44 ~~~~~~~G~~~~qd~~s~~------------~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~ 111 (264)
T TIGR00446 44 STPEYLSGLYYIQEASSMI------------PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV 111 (264)
T ss_pred cChhHhCCeEEEECHHHHH------------HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 3345667776655444443 112245578899999999999999999884 2 36999999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccC------------Chh-------hHHHHHHHHHhccc
Q 016992 160 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL------------FEN-------MLNTVLYARDKWLV 220 (379)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~------------~~~-------~~~~~l~~~~~~Lk 220 (379)
++++++++++. +|.+++.|+..+....++||+|++++++++.. ... ....+|....++||
T Consensus 112 ~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk 190 (264)
T TIGR00446 112 LIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK 190 (264)
T ss_pred HHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999985 59999999887654446799999998776541 111 12468899999999
Q ss_pred CCEEEEecCCceEE
Q 016992 221 DDGIVLPDKASLYL 234 (379)
Q Consensus 221 pgG~lip~~~~~~~ 234 (379)
|||++++++|++..
T Consensus 191 pgG~lvYstcs~~~ 204 (264)
T TIGR00446 191 PGGVLVYSTCSLEP 204 (264)
T ss_pred CCCEEEEEeCCCCh
Confidence 99999998888643
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=146.74 Aligned_cols=120 Identities=14% Similarity=0.014 Sum_probs=94.6
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCce
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKV 190 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~ 190 (379)
.......+|.+|||+|||+|..+.++++ .+.++|+|+|+++ +++.+++++++.|+...+.+..+|...... +.++|
T Consensus 231 ~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 231 ATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred HHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccccc
Confidence 3334567899999999999999999998 4556999999999 999999999999986445557777765543 34789
Q ss_pred eEEEEecCccccCC---hhh----------------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYFLLF---ENM----------------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~l~~---~~~----------------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|.|++++++++... .+. ...+|.++.++|||||.+++++|++..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99999877665321 111 257889999999999999999888743
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=139.10 Aligned_cols=111 Identities=27% Similarity=0.375 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
..+....++|.+. ..+|++|||+|||||.+++.+++.|+++|+|+|+++ +++.|++|+..|++.+++.+. ...+
T Consensus 146 ~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~- 220 (295)
T PF06325_consen 146 PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED- 220 (295)
T ss_dssp HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-
T ss_pred HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-
Confidence 4455666777654 568899999999999999999999999999999999 999999999999998877653 2222
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...++||+|+++.+. ..+..++..+.++|+|||.+|.
T Consensus 221 -~~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 221 -LVEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp -TCCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEE
T ss_pred -cccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEE
Confidence 223899999999753 4456778888899999999993
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-15 Score=129.68 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.+++++..+++. +.+...|+...+++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEec
Confidence 344567999999999999999999875 999999999 999999999888874 78888888766665 6899999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+++ +......+++++.++|||||+++
T Consensus 103 ~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 103 VFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 53333 33567899999999999999865
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=125.51 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.++||||||.|..++.+|+.|. .|+|+|.|+ .++.+++.+...+++ |+..+.|+.+..++ +.||+|++.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st 101 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVST 101 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEE
Confidence 4445677999999999999999999998 999999999 999999999999885 99999999988886 789999997
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+..++. ....+.+++.+...++|||+++.
T Consensus 102 ~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 102 VVFMFLQ-RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SSGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEeccCC-HHHHHHHHHHHHhhcCCcEEEEE
Confidence 6655554 46778999999999999999774
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=136.91 Aligned_cols=114 Identities=25% Similarity=0.309 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
..+....+++.+. ..+|++|||+|||+|.+++.+++.|+++|+|+|+++ +++.|++|+..|++...++.-..+....
T Consensus 147 pTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 3455556666644 358999999999999999999999999999999999 9999999999999864333333333333
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+. .++||+||++.+. ..+..+...+.+.|||||+++.
T Consensus 225 ~~-~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIl 261 (300)
T COG2264 225 PE-NGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLIL 261 (300)
T ss_pred cc-cCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEE
Confidence 22 3699999998643 4456888889999999999993
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-15 Score=144.42 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=92.8
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
....+|.+|||+|||+|..+..+++.+ ..+|+|+|+++ +++.++++++.+|+. ++++++|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 456789999999999999999999853 36999999999 999999999999874 789999998754 234689999
Q ss_pred EEecCccccC------------Chhh-------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 194 ISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 194 v~~~~~~~l~------------~~~~-------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
++++++++.. .... ...++..+.++|||||.+++++|+++.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 9988755321 1111 247888999999999999988887644
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=126.08 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.++.. +..+|+|+|.++ |++.++++++.+++. +++++++|+.++.. .++||+|+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~-~~~fD~I~s~~- 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH-EEQFDVITSRA- 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc-cCCccEEEehh-
Confidence 35889999999999999998875 456899999999 999999999999885 59999999998753 47999999864
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ ..+..++..+.++|+|||.++.
T Consensus 118 ---~---~~~~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 118 ---L---ASLNVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred ---h---hCHHHHHHHHHHhcCCCCEEEE
Confidence 2 3456778888999999999984
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=135.47 Aligned_cols=103 Identities=26% Similarity=0.244 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...++.++++++++|+.++. ..+++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999864 999999999 99999999999988778999999998874 44578999998654
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+ +..++..++.++.++|||||.++.
T Consensus 122 l~---~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 122 LE---WVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HH---hhCCHHHHHHHHHHHcCCCeEEEE
Confidence 33 335677899999999999999873
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=133.80 Aligned_cols=113 Identities=21% Similarity=0.281 Sum_probs=87.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
.+.+.+...+.+|.+|||||||.|.+++.+|+. |+ +|+||.+|+ ..+.|++.+++.|+.+++++...|..+++ .
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~ 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---G 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---C
Confidence 345666678899999999999999999999995 76 999999999 99999999999999999999999998765 4
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||.|+|-.+..++ +....+.+++.+.++|||||.++.+
T Consensus 127 ~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 127 KFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 89999996553333 2357889999999999999999853
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=132.66 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=97.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.+.+.+.+|++|||||||-|.+++.+|+.-..+|+|+++|+ +.+.+++++...|+.++|+++..|..++. ++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~ 137 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP 137 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence 455667788999999999999999999999995234999999999 99999999999999889999999999885 55
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
||-|||-.|..++. ....+.++..+.++|+|||.++..
T Consensus 138 fDrIvSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 138 FDRIVSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cceeeehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEE
Confidence 99999965533332 245789999999999999999843
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-14 Score=121.46 Aligned_cols=103 Identities=30% Similarity=0.356 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
++.+|||+|||+|.+++.+++.+. .+|+++|+++ +++.+++++..+++.+ ++++..|..+... .++||+|+++++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-DGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-TTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-ccceeEEEEccch
Confidence 678999999999999999999654 3799999999 9999999999999976 9999999876533 4899999999863
Q ss_pred cccC--ChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLL--FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~--~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... +...+..++....++|||||.++
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 2221 11246889999999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=135.53 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=89.2
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEE
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (379)
.......+|++|||||||+|.++..+++.|+..|+|+|+|+ ++..++......+...+|.++.+|++++++ .++||+|
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 33444567899999999999999999998888899999999 987665544433333569999999999987 5899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|..+ +.|..++..+++++.+.|+|||.++.+
T Consensus 194 ~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 194 FSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 98544 344567889999999999999999864
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=115.84 Aligned_cols=104 Identities=26% Similarity=0.413 Sum_probs=86.9
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~ 199 (379)
|.+|||+|||+|.+++.+++.+..+++|+|+++ .++.|+.++..+++.++++++++|+.+.. ++.++||+|+++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP- 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP- 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC-
Confidence 568999999999999999998767999999999 99999999999999888999999998886 56799999999975
Q ss_pred cccCC------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLF------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++-.. ......+++.+.++|+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 33211 12346889999999999999874
|
... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=141.72 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=93.6
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
....++.+|||+|||+|..+..+++. +.++|+|+|+++ +++.++++++++|+.+ |+++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhc-ccCCE
Confidence 44578899999999999999999984 357999999999 9999999999999954 999999998763 33 68999
Q ss_pred EEEecCccccCC------------hhh-------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 193 IISEWMGYFLLF------------ENM-------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 193 Iv~~~~~~~l~~------------~~~-------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|++++++++... ... ...++..+.++|||||.+++++|+++.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 999987554311 011 146788999999999999988887644
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=132.86 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......+|++|||||||+|.++..++..|+..|+|+|+|+ |+..++......+...++.+..+++++++.. .+||+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~ 191 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDT 191 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCE
Confidence 444455678899999999999999999888888999999999 9877644333222235688999999888765 68999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|..+ +.|..++..++.++++.|||||.|+..
T Consensus 192 V~s~gv---L~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 192 VFSMGV---LYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EEEcch---hhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 998654 344467789999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=130.79 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 357789999999999999888872 446999999999 9999999999888877899999999988764 5899998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
....+++. ......+++++.+.|||||.++...
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 65444443 3456789999999999999998543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=112.18 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=85.6
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeE
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDI 192 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 192 (379)
......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++++...++. +++++.+|+... +...++||+
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCE
Confidence 3344566789999999999999999985 557999999999 999999999988875 589999987653 222368999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++... . .....+++.+.++|+|||.++..
T Consensus 92 v~~~~~---~---~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 92 VFIGGS---G---GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEECCc---c---hhHHHHHHHHHHHcCCCCEEEEE
Confidence 997532 1 34568999999999999999854
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=130.66 Aligned_cols=111 Identities=27% Similarity=0.294 Sum_probs=88.7
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.....+.++.+|||||||+|..+..+++....+|+|+|+++ |++.|+++... .+++.++++|+.+.++++++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 334456678899999999999999998874234999999999 99999987654 25699999999988887789999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++.....++ ...+...+++++.++|||||.++..
T Consensus 121 V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 121 IYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9984321221 1236789999999999999999853
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=113.21 Aligned_cols=96 Identities=23% Similarity=0.387 Sum_probs=77.9
Q ss_pred EEEEcCCCchHHHHHHHc---C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 126 VLDVGAGTGILSLFCAKA---G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~---g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
|||+|||+|..+..+++. + ..+++|+|+|+ |++.++++....+. ++++++.|+.+++...++||+|++.....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999985 3 26999999999 99999999988776 58999999999887678999999943212
Q ss_pred ccCChhhHHHHHHHHHhcccCCE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
.......+..+++.+.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 23556778999999999999998
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-14 Score=130.29 Aligned_cols=106 Identities=24% Similarity=0.320 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHH-cCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~-~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
.+.++.+|||+|||+|..++.+++ .+. .+|+++|+++ |++.|+++....++. +++++.+|++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998887777 344 5899999999 999999999988884 699999999998887789999998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+.+ +..+...+++++.++|||||+++..
T Consensus 153 ~~v~~---~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 153 NCVIN---LSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred cCccc---CCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 76433 3356778999999999999999854
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=121.72 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=89.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
+....-.++||+|||.|.++..+|.. ..+++++|+++ .++.|+++.... .+|++++.|+.+... .++||+||..
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P-~~~FDLIV~S 113 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP-EGRFDLIVLS 113 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC-CCCeeEEEEe
Confidence 34445568999999999999999997 35999999999 999999988753 469999999988754 4999999998
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccccccccccccccccc
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGF 256 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 256 (379)
-++|++....++..++..+...|+|||.+|..+. .......|...+|-
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~------------rd~~c~~wgh~~ga 161 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA------------RDANCRRWGHAAGA 161 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHHTT-S--H
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe------------cCCcccccCcccch
Confidence 8899998777899999999999999999995321 22345568776664
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=129.32 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=84.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++.+++.+...+... ...++||+|+++.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecC
Confidence 357899999999999999999998888999999999 999999999999988778887776332 22478999999754
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. ..+..++..+.++|||||.++.
T Consensus 235 ~------~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 235 A------EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred H------HHHHHHHHHHHHHcCCCcEEEE
Confidence 2 3456788999999999999984
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-14 Score=126.09 Aligned_cols=108 Identities=30% Similarity=0.367 Sum_probs=91.2
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~I 193 (379)
.......+|||+|||+|.+++++|+. ...+|+|||+.+ +++.|+++++.|++.++|+++++|+.++... ..+||+|
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 33445789999999999999999996 657999999999 9999999999999999999999999987532 3579999
Q ss_pred EEecCccccCChh----------------hHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~li 226 (379)
+|+++ |+-.+.. .++.+++...++|||||.+.
T Consensus 120 i~NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 120 ICNPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred EeCCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 99985 5443322 24788999999999999987
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-14 Score=128.05 Aligned_cols=105 Identities=26% Similarity=0.272 Sum_probs=85.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++.+ .+|+++|+|+ |++.|+++.. .+.++++|++.+++++++||+
T Consensus 34 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 34 LLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEE
Confidence 3333444467899999999999999998876 4999999999 9999987642 256889999998888789999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++... +.+..++..++.++.++|+|||.+++.
T Consensus 107 V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 107 AWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 998653 334467889999999999999999854
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-14 Score=129.87 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+ +++.+++++..+++ ++++...|+....++ ++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~-~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ-EEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc-CCccEEEEcchh
Confidence 3456999999999999999999875 999999999 99999999999887 488999998876664 889999998654
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++ .......++.++.++|+|||+++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 444 33567899999999999999965
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-14 Score=128.03 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=83.9
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++. +++++++|++++. +.++||
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCce
Confidence 344455567899999999999999999885 345999999999 99999752 3789999998874 447999
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|++..+.++ ..+...++.++.+.|||||.++..
T Consensus 92 ~v~~~~~l~~---~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 92 VVVSNAALQW---VPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEEehhhhh---CCCHHHHHHHHHHhCCCCcEEEEE
Confidence 9999765333 357789999999999999999853
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=121.09 Aligned_cols=106 Identities=26% Similarity=0.304 Sum_probs=84.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.....++.+|||+|||+|..+..+++. + .++|+++|+++ +++.|++++..+++.++++++.+|+.+......+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 3444455678899999999999999998884 3 46999999999 9999999999999877799999999875444478
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|++... + ..+..++.+.|+|||+++.
T Consensus 143 fD~Ii~~~~---~------~~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 143 FDAIIVTAA---A------STIPSALVRQLKDGGVLVI 171 (205)
T ss_pred ccEEEEccC---c------chhhHHHHHhcCcCcEEEE
Confidence 999998643 1 1223467789999999874
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=136.32 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=88.4
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. +...+++++++|+...++++++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 34567889999999999999999885334999999999 9999998765 34457999999999888777889999986
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+ +.+..+...++.++.++|||||.++..
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 43 444467889999999999999999854
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=129.02 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+.+|||+|||+|.+++.+++. +..+|+++|.|+ +++.|+++++.++.. .+++++..|+.... +..+||+|+|+
T Consensus 227 ~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlIlsN 305 (378)
T PRK15001 227 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAVLCN 305 (378)
T ss_pred ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEEEEC
Confidence 34569999999999999999985 457999999999 999999999988753 36899998886542 33689999999
Q ss_pred cCccccC--ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.+... .......++....+.|+|||.++.
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 7533221 123456888999999999999873
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=123.53 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 47789999999999999998874 356999999999 9999999998876656799999999988764 58999886
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
...+++ .......+++++.+.|+|||.++...
T Consensus 130 ~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhC-CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 543333 23456789999999999999998653
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=125.58 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=85.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++ .++.++.+|+..+..+ .+||
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~-~~fD 95 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPP-QALD 95 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCC-CCcc
Confidence 444455677889999999999999999884 457999999999 999998764 3488999999877543 7999
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|++..+.+ +..+...++..+.+.|||||.++..
T Consensus 96 ~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQ---WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChh---hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999875433 3356788999999999999998854
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=121.10 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eecc--CCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~Iv~~ 196 (379)
++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++ .+++++++|+ ..++ ++.++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6679999999999999999884 456899999999 99999999999888 4699999999 7665 556789999986
Q ss_pred cCccccC--Ch---hhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip 227 (379)
....... +. .....+++++.++|||||.++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 4321111 00 1246789999999999999984
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-14 Score=119.72 Aligned_cols=137 Identities=26% Similarity=0.383 Sum_probs=118.2
Q ss_pred hhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 016992 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (379)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (379)
.||-.+|.|..|...|..+|..... ..+.|+|+|+|.+++.+|+. +.+|++||.++ ..+.|.+++.-+|+ +++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cce
Confidence 5778899999999999999987533 68999999999999999998 78999999999 99999999988888 679
Q ss_pred EEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecc
Q 016992 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240 (379)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 240 (379)
+++.+|+.+..+ +..|+|+|++++..|..+... .+++.+..+|+.++.+||+....-+.++...
T Consensus 83 evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qV-pV~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 83 EVVVGDARDYDF--ENADVVICEMLDTALIEEKQV-PVINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred EEEecccccccc--cccceeHHHHhhHHhhccccc-HHHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 999999999987 678999999888777766554 5667777899999999999887777766543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=124.10 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=86.5
Q ss_pred CEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
++|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++...|+.++++++..|+...+++ ++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~--- 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV--- 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH---
Confidence 47999999999999999884 446999999999 9999999999999988999999999776655 68999997544
Q ss_pred cCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..+...+++++.++|||||.++..
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 333366789999999999999999854
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=124.75 Aligned_cols=147 Identities=23% Similarity=0.220 Sum_probs=109.0
Q ss_pred cCCCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCE
Q 016992 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH 147 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~ 147 (379)
.++.++++.+++.++ +.||+.+...+.+..+-. ...+.+.......++.+|||||||+|.++..+++.+. +
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~ 72 (233)
T PRK05134 2 SNVDPAEIAKFSALA--ARWWDPNGEFKPLHRINP------LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-D 72 (233)
T ss_pred CcccHHHHHHHHHHH--HHHhccCCCcHHHHHhhH------HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-e
Confidence 345555666666666 678888876554443321 2223344434456788999999999999999988764 8
Q ss_pred EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEE
Q 016992 148 VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 148 v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
|+++|+++ +++.+++++...+. .+.++..++.+++ ...++||+|++..+ +.+......++..+.++|+|||.+
T Consensus 73 v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l 147 (233)
T PRK05134 73 VTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLV 147 (233)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEE
Confidence 99999999 99999999887765 4788888887764 23478999997543 444467788999999999999998
Q ss_pred Eec
Q 016992 226 LPD 228 (379)
Q Consensus 226 ip~ 228 (379)
+..
T Consensus 148 ~v~ 150 (233)
T PRK05134 148 FFS 150 (233)
T ss_pred EEE
Confidence 854
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-13 Score=116.28 Aligned_cols=101 Identities=27% Similarity=0.276 Sum_probs=83.2
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
....++.+|||+|||+|.+++.+++. +..+|+++|+++ +++.|++++..+++. +++++++|+.. .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 44568889999999999999999985 446999999999 999999999998874 59999998753 333 68999997
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
... . ..+..++..+.++|+|||+++.
T Consensus 104 ~~~---~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS---G---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC---c---cCHHHHHHHHHHhcCCCeEEEE
Confidence 532 1 2356788899999999999984
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=118.58 Aligned_cols=107 Identities=27% Similarity=0.349 Sum_probs=87.7
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCcee
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVD 191 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D 191 (379)
......++.+|||+|||+|.+++.+++. + ..+|+++|+++ +++.|++++..+++.+++.++++|+.+.. ...++||
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 3456778999999999999999999874 3 46999999999 99999999999987677999999987642 2236899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.|++.. +...+..++..+.+.|+|||+++..
T Consensus 114 ~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 114 RIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999742 1145678899999999999999843
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=125.75 Aligned_cols=106 Identities=26% Similarity=0.419 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|+++++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34579999999999999999985 446999999999 9999999999999877899999998653 34468999999864
Q ss_pred ccccC-----------Ch------------hhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLL-----------FE------------NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~-----------~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|.-. ++ .....++..+.++|+|||+++..
T Consensus 199 -y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 -YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred -CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3211 11 12467788889999999999843
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=128.81 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||||||+|.++..+++ .+..+|+++|.|+ |++.|+++... .+++++.+|++++++++++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999998887 4556999999999 99999987642 3588999999998887789999998543
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+..+...+++++.++|||||.++.
T Consensus 188 ---L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 188 ---IEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---hhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 33345677899999999999999873
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-13 Score=112.89 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=90.9
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
....+.+.+|.+++|||||||.+++.++.. +..+|||+|.++ +++..++|.++.|+ ++++++.+++.+.-.+..++|
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCCC
Confidence 444567889999999999999999999974 458999999999 99999999999997 579999999988744434799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.|+.. -+ ..++.+++.+...|||||++|..
T Consensus 105 aiFIG---Gg----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 105 AIFIG---GG----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred EEEEC---CC----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 99943 22 56789999999999999999954
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=128.15 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=93.9
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
...+.......++.+|||+|||+|.+++.++..|. +|+|+|+++ |+..|+++++..|+.+ +.++++|+.++++++++
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCC
Confidence 33444445567889999999999999998888764 999999999 9999999999999876 89999999998877689
Q ss_pred eeEEEEecCccccCC-------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|+++++ |+... ......++..+.++|||||+++.
T Consensus 249 ~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 249 VDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 999999964 43311 13357899999999999999873
|
This family is found exclusively in the Archaea. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-13 Score=132.12 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=93.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....+|.+|||+|||+|..+..+++. +.++|+|+|+++ +++.+++++++.|+. +|+++++|+..+. +.++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 45578899999999999999998873 346999999999 999999999999984 6999999998875 347899999
Q ss_pred EecCccccCCh------------h-------hHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 195 SEWMGYFLLFE------------N-------MLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 195 ~~~~~~~l~~~------------~-------~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
+++++++.... . ....++..+.++|||||++++++|++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 98776554211 1 123689999999999999999888864
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=122.94 Aligned_cols=95 Identities=31% Similarity=0.449 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++.+++.+..++ .+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc
Confidence 357889999999999999998888887899999999 999999999998875545544332 27999998753
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
. ..+..++..+.++|||||.++.+
T Consensus 189 ~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 189 A------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred H------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 34567888999999999999953
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=119.99 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=83.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.....++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|+++++.+++ ++++++++|+.+......+|
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCC
Confidence 444455678999999999999999999985 3 24799999999 99999999999998 56999999998754444689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++.... ..+...+.+.|+|||+++.
T Consensus 148 D~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 148 DRIYVTAAG---------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred CEEEEcCCc---------ccccHHHHHhcCcCcEEEE
Confidence 999976421 2234556788999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=119.38 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=83.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.....++.+|||||||+|.++..+++. +. .+|+++|+++ +++.|+++++..++ ++++++++|+.....+..+|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCc
Confidence 444456778999999999999999999885 32 6999999999 99999999999988 46999999988765555789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++... . ..+...+.+.|||||+++.
T Consensus 147 D~I~~~~~---~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 147 DRIYVTAA---G------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CEEEECCC---c------ccchHHHHHhhCCCcEEEE
Confidence 99997532 2 1233456678999999874
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-13 Score=133.78 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=86.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEE
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv 194 (379)
...++.+|||+|||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+ .++.++++|+.+++ +++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEE
Confidence 345788999999999999888887 4557999999999 9999998876655 35889999998876 5668999999
Q ss_pred EecCccccC----------ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 195 SEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+..+.+.+. ....+..+++++.++|||||.++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 875433221 1246789999999999999999853
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=118.77 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=92.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+...+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.++++.. ....++.++..|+..++++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCC
Confidence 3444555566778899999999999999999884 346999999999 9999988733 2235699999999988877
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
.++||+|++..+ +.+..++..+++++.++|+|||.++...
T Consensus 85 ~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 789999998654 3344677889999999999999998654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-13 Score=118.47 Aligned_cols=105 Identities=26% Similarity=0.285 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.+++++..+++ ++.++++|+.+. ++.++||+|++++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECC
Confidence 3467889999999999999999998767999999999 99999999998886 488999998764 3457899999986
Q ss_pred CccccCCh-------------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ |..... ..+..++..+.++|||||+++.
T Consensus 110 P-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 P-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred C-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 332211 1256788889999999999883
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-13 Score=128.58 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeecc--C--CCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~~D~Iv 194 (379)
.++++|||+|||+|.+++.++..|+.+|++||+|+ +++.|++++..|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 36789999999999999988877778999999999 999999999999986 47999999998752 1 236899999
Q ss_pred EecCccccCChh-------hHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 195 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 195 ~~~~~~~l~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
++++ ++..... ....++....++|+|||.++.++|+-++
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 9986 4433321 2345566778999999999976655433
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=115.22 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++. +++++++|+.+.. . ++||+|+++++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~-~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-R-GKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-C-CcccEEEECCC
Confidence 34667899999999999999999876 999999999 99999999998876 4899999987653 3 68999999865
Q ss_pred ccccCC------------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLF------------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~------------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.... ......++.++.++|+|||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 322211 11256789999999999999874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-13 Score=121.55 Aligned_cols=90 Identities=23% Similarity=0.254 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||||||||.++..+++....+|+|+|+|+ |++.|++. ..++++|++++++++++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~--- 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSF--- 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecC---
Confidence 4779999999999999999986335999999999 99999763 2357899999999889999999853
Q ss_pred ccCChhhHHHHHHHHHhcccCCE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
.+.+..++..+++++.|+|||.+
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCce
Confidence 45666788999999999999954
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-13 Score=125.08 Aligned_cols=102 Identities=26% Similarity=0.467 Sum_probs=83.6
Q ss_pred CEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|+++++.+++.++|+++++|+.+. ++.++||+|+++++ |.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-yi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-YV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-CC
Confidence 68999999999999999984 456999999999 9999999999999877899999998653 33368999999864 22
Q ss_pred cC-----------Ch------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 202 LL-----------FE------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 202 l~-----------~~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
-. ++ .....++..+.++|+|||.++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 11 2346788899999999999984
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=119.27 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=92.0
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.......++.+|||+|||+|.++..+++.+ ..+|+++|+++ +++.+++++..+++..++.++.+|+.+++.+.+.|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 122 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSF 122 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCc
Confidence 3333444577899999999999999999865 47999999999 99999999887766667999999999887666789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++.. .+.+..++..++..+.++|+|||.++.
T Consensus 123 D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 123 DAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred cEEEEec---ccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 9999753 344556788999999999999999874
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.9e-13 Score=122.70 Aligned_cols=124 Identities=24% Similarity=0.300 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcc-CCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 103 DVVRTKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~-~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
++..++.+...+.... ...++.+|||+|||+|.+++.++.. +..+|+|+|+|+ +++.|++++..+++.++++++++|
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 4444555555444322 1223369999999999999999985 446999999999 999999999999987679999999
Q ss_pred eeeccCCCCceeEEEEecCccccC-----------Ch------------hhHHHHHHHHHhcccCCEEEEec
Q 016992 180 IEEIELPVTKVDIIISEWMGYFLL-----------FE------------NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~l~-----------~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+. ++..+||+|+++++ |.-. ++ ..+..++..+.++|+|||+++..
T Consensus 174 ~~~~-~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 174 LFEP-LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred hhcc-CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 8763 33348999999853 2211 11 14567888899999999999853
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=129.42 Aligned_cols=136 Identities=13% Similarity=-0.024 Sum_probs=104.4
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhcc--CCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANM 159 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~--~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~ 159 (379)
..|..++...+...+|+ ....+ ...+|.+|||+|||+|+.+.++|.. +.+.|+++|+++ .++.
T Consensus 86 ~~~~~G~~yvQd~sS~l------------~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~ 153 (470)
T PRK11933 86 AEHLSGLFYIQEASSML------------PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKV 153 (470)
T ss_pred hHHHCCcEEEECHHHHH------------HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence 45556665555555554 11112 5579999999999999999999984 346999999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCccccCC---hhh----------------HHHHHHHHHhcc
Q 016992 160 AKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLF---ENM----------------LNTVLYARDKWL 219 (379)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~---~~~----------------~~~~l~~~~~~L 219 (379)
+++++++.|+. +|.+.+.|...+. ...+.||.|+.+.+|++... .++ -..+|....++|
T Consensus 154 L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L 232 (470)
T PRK11933 154 LHANISRCGVS-NVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL 232 (470)
T ss_pred HHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999995 5899999988763 11367999999988775421 111 157888899999
Q ss_pred cCCEEEEecCCceE
Q 016992 220 VDDGIVLPDKASLY 233 (379)
Q Consensus 220 kpgG~lip~~~~~~ 233 (379)
||||+|++++|++.
T Consensus 233 kpGG~LVYSTCT~~ 246 (470)
T PRK11933 233 KPGGTLVYSTCTLN 246 (470)
T ss_pred CCCcEEEEECCCCC
Confidence 99999999999853
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=113.23 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=84.0
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 190 (379)
+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++.+++ ++++++++|+.+. +.....+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCC
Confidence 444455678899999999999999999874 457999999999 99999999999988 4699999998652 2111346
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|.++.+. ...+..++..+.++|+|||.++..
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 7776532 134578899999999999999844
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-13 Score=113.61 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.|. +|+|+|+++ +++. .++.....+......+.++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 57888999999999999999988877 999999999 8887 1133333333344445689999998755
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..++..+++.+.++|||||.++..
T Consensus 88 ---l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 88 ---LEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ---GGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred ---HhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 444468999999999999999999853
|
... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-14 Score=111.04 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=61.6
Q ss_pred EEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEEEEecCcccc
Q 016992 127 LDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFL 202 (379)
Q Consensus 127 LDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~l 202 (379)
||||||+|.++..+++. +..+++|+|+|+ |++.|++++...+.. ....+..+..+.... .++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999998885 556999999999 999999999887653 233444333332211 2599999986554444
Q ss_pred CChhhHHHHHHHHHhcccCCEEE
Q 016992 203 LFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
.++..+++.+.++|||||+|
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=116.30 Aligned_cols=112 Identities=23% Similarity=0.252 Sum_probs=90.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+...+.......++.+|||+|||+|.++..+++... .+++++|+++ +++.++++.. ...++.++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 334444444455788999999999999999998644 5999999999 9999988775 335689999999988776
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++||+|++.. .+.+..++..+++.+.++|+|||.++.
T Consensus 104 ~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 104 DNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 67899999753 345557788999999999999999884
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=115.55 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~ 196 (379)
...+|||||||+|.++..+++. +...|+|+|+++ +++.|++++...++. +++++++|+.++. ++++.+|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999884 557999999999 999999999998885 7999999998754 344689999987
Q ss_pred cCccccC--C---hhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--F---ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....... + .-....++..+.++|||||.++.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 5322111 0 01125789999999999999984
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=114.56 Aligned_cols=103 Identities=25% Similarity=0.250 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ |+..|++++...+..+++.+.++|+.+++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45788999999999999999998755 999999999 99999999988877667999999998765 78999998433
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+++ ....+..++.++.+++++++.+.+
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2222 224567889999999988777664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=123.34 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=96.5
Q ss_pred hhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 016992 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (379)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (379)
.....+.++..++.+.+.+.... .++.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|+++++.++. ++
T Consensus 227 V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV 302 (423)
T PRK14966 227 VNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RV 302 (423)
T ss_pred eCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cE
Confidence 33445556777788887776443 4567999999999999999887 4567999999999 99999999998875 69
Q ss_pred EEEEcceeeccCC-CCceeEEEEecCccccCCh-----------------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 174 TVLKGKIEEIELP-VTKVDIIISEWMGYFLLFE-----------------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 174 ~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~-----------------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++++|+.+..++ .++||+|+|+++ |.-..+ ..+..++..+.+.|+|||.++.
T Consensus 303 ~fi~gDl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 303 EFAHGSWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EEEEcchhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999998764332 357999999974 322111 1235777778899999999873
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=130.26 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=100.9
Q ss_pred chhhHHhhcCHHHHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCchHHHHHHH-cCCCEE
Q 016992 94 FGIHEEMLKDVVRTKSYQNVIYQNKF------------------------LFKDKVVLDVGAGTGILSLFCAK-AGAAHV 148 (379)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~------------------------~~~~~~VLDlGcG~G~~~~~la~-~g~~~v 148 (379)
+......|-++..++.+.+.+..... ..++.+|||+|||+|.+++.++. .+..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 44555677778888888876654321 11346899999999999998887 456799
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCC------------h----------
Q 016992 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF------------E---------- 205 (379)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~------------~---------- 205 (379)
+|+|+|+ +++.|++++..+++.+++.++++|+.+. ++.++||+|+|+++ |.... +
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~l~~~v~~~EP~~AL~gg~d 243 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP-YISHSEKSEMAIETINYEPSIALFAEED 243 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-CCCchhhhhcCchhhccCcHHHhcCCcc
Confidence 9999999 9999999999999877899999998653 33468999999863 32211 1
Q ss_pred --hhHHHHHHHHHhcccCCEEEEec
Q 016992 206 --NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 206 --~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+..++..+.++|+|||.++..
T Consensus 244 Gl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 244 GLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12356778888999999999854
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=109.01 Aligned_cols=108 Identities=27% Similarity=0.342 Sum_probs=86.1
Q ss_pred EEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc-
Q 016992 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF- 201 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~- 201 (379)
+|||+|||.|.+...+++.|. ...+|||.|+ +++.|+..+++.++++.|+|.+.|+.+..+..++||+|+--.....
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 999999999999999999765 3599999999 9999999999999998899999999987655688998875321111
Q ss_pred -cCC---hhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 202 -LLF---ENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 202 -l~~---~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
|.. .+.+...+..+.++|+|||++++..|..
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 111 1233567788899999999999665554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-12 Score=113.51 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=104.7
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~ 163 (379)
..||+.+..++....+ +..+.+...+.+........+.+|||+|||+|.++..+++.+. +++++|+++ +++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~ 86 (224)
T TIGR01983 10 HEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLH 86 (224)
T ss_pred HHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence 5677777766555444 4555555555555432234578999999999999999988765 799999999 99999999
Q ss_pred HHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 164 VEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+...+.. ++.+...|+.+++.. .++||+|++..+ +.+...+..++..+.++|+|||.++..
T Consensus 87 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 87 AKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9887752 589999998877544 378999997543 444467789999999999999998854
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=110.60 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=83.3
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE-EEEcceeecc-CCCCceeEEEEecCcc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 200 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~D~Iv~~~~~~ 200 (379)
..||++|||||..-...--.+..+|+++|.++ |-++|.+.++++.- .++. |+.++.++++ ++++++|.||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 46899999999764444334557999999999 99999999988854 4466 9999999998 77899999998653
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|....++.+.|+++.++|+|||++++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 55568899999999999999999984
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=115.73 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCchH-HHHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHH-cCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGIL-SLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~-~~~la-~~-g~~~v~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
++++|+|||||.|.+ ++.++ +. +..+++++|.++ +++.|++.+.. .++.++|+|+.+|+.+.....++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 778999999998744 44444 33 557999999999 99999999965 888888999999998864334789999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+.+ . .......+++.+.+.|+|||.++..
T Consensus 203 ALi~-~-dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 ALVG-M-DKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred cccc-c-ccccHHHHHHHHHHhcCCCcEEEEe
Confidence 3211 1 1257789999999999999999854
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=113.33 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=79.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D 191 (379)
..+.+|.+|||+|||+|.++..+++. +.++|+|+|+++ |++.+.++++.. .+|.++.+|+... .+. ++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccCC
Confidence 56778999999999999999999995 446999999999 999887776653 4589999998752 223 5699
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.. .......++.++.++|||||.++.
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9997632 111234568899999999999884
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-12 Score=123.10 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
..+.+.....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++. ++ .+++...|..++ +++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCC
Confidence 34445556778999999999999999999985334999999999 9999999874 33 388888888765 2789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|++..+..++ +...+..+++.+.++|||||.++..
T Consensus 230 D~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999986543322 2345678999999999999999854
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=134.17 Aligned_cols=109 Identities=19% Similarity=0.144 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeeccC-CCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL-PVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (379)
.+|++|||+|||+|.+++.+++.|+.+|++||+|+ +++.|++++..|++. ++++++++|+.+... ..++||+||+++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 35789999999999999999998888999999999 999999999999996 579999999876421 136899999997
Q ss_pred CccccCC---------hhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 198 MGYFLLF---------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 198 ~~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+ ++... ......++..+.++|+|||.++.+.+
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 5 32221 22456788888999999999986543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=114.65 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..+.+|||+|||+|.++..+++.+ ..+|+++|+++ ++..+++... .++.++.+|+.+.++++++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999999864 46799999999 9999887654 3588999999998877789999998654
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..++..++.++.++|+|||.++..
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 334467789999999999999999854
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-12 Score=119.78 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
...+|||+|||+|.++..+++. +..+|+++|+++ +++.|+++++.+++. .+++..|+... . .++||+|+|+++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCCc
Confidence 3458999999999999999985 446999999999 999999999999874 46777887653 3 3789999999753
Q ss_pred cccC--ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... .......++..+.+.|||||.++.
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 3211 124567899999999999999873
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-12 Score=115.42 Aligned_cols=112 Identities=20% Similarity=0.144 Sum_probs=85.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+........|++|||||||.|..+..+++.|++.|+|+|.+. .....+....-.|....+.++..-+++++. .+.||+
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCE
Confidence 334445678999999999999999999999999999999998 655544333333433334555456777776 589999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|+|-.+.|+. .++-..|..+...|+|||.+|..+
T Consensus 186 VF~MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYHR---RSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhcc---CCHHHHHHHHHHhhCCCCEEEEEE
Confidence 9996654444 677889999999999999998553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-12 Score=110.91 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||+|||+|.++..+++. +..+|+|+|+|+ |++.|+++.. ++.++++|+.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECC
Confidence 356779999999999999999885 567999999999 9999987642 36788899887 66678999999876
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+++ ....+..+++++.++++ +.++
T Consensus 114 vL~hl-~p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 114 VLIHI-NPDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred hhhhC-CHHHHHHHHHHHHhhcC--cEEE
Confidence 54444 23567888999998873 4444
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=111.03 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=81.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++.. .+|+++|.++ +++.|+++++..++. +++++++|+.+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCE
Confidence 3444556788999999999999999888874 4899999999 999999999999885 499999998654333478999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|++... . ..+...+.+.|+|||.++.
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEEE
Confidence 997542 1 2234556789999999874
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=113.64 Aligned_cols=117 Identities=26% Similarity=0.300 Sum_probs=88.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
...+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++. ++.++++|+.+.
T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~- 149 (251)
T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP- 149 (251)
T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-
Confidence 3344444443332 34569999999999999999984 456999999999 999999999999885 699999999763
Q ss_pred CCCCceeEEEEecCccccCC------------h------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.++||+|+++++ +.... + .....++..+.++|+|||.++.
T Consensus 150 ~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 LPGGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CcCCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 44588999999865 32211 0 1124678899999999999884
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=107.93 Aligned_cols=104 Identities=26% Similarity=0.354 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.++..+++.+ .+|+++|.++ +++.+++++..+++.++ +.++++|+.+.. ...+||+|+++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECCC
Confidence 577899999999999999999984 6999999999 99999999998887544 889999987643 3358999998754
Q ss_pred ccccC-------------------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLL-------------------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~-------------------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... +...+..++.++.++|||||.+++
T Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 100 -YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred -cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2110 122356789999999999998874
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=116.59 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=90.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.......++.+|||||||+|.+++.+++. +..+++++|...+++.+++++...++.++|+++.+|+.+.+++ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence 344555555677889999999999999999985 5569999998339999999999999988999999999876554 3
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|+|++..+.+.. .......+++++.+.|+|||+++..
T Consensus 216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6998854332221 2344568999999999999999854
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-12 Score=116.30 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCch----HHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH----cC-----------------
Q 016992 121 FKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA----NG----------------- 168 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~----~~~~la~~g------~~~v~~vD~s~-~~~~a~~~~~~----~~----------------- 168 (379)
.++.+|||+|||||. +++.+++.+ ..+|+|+|+|+ |++.|++.+.. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 455799999999995 666666632 24899999999 99999885410 01
Q ss_pred -----CCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 169 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 169 -----~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.++|+|.++|+.+.+.+.++||+|+|..+..++ .......++.++.+.|+|||+++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEE
Confidence 2246899999999887766899999996553333 234567899999999999999984
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=115.35 Aligned_cols=124 Identities=24% Similarity=0.291 Sum_probs=92.7
Q ss_pred hcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc
Q 016992 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178 (379)
Q Consensus 101 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~ 178 (379)
+.+...++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++. .....++.++++
T Consensus 87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~ 165 (275)
T PRK09328 87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG 165 (275)
T ss_pred eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEc
Confidence 3344555666666654444567789999999999999999985 457999999999 9999999988 344467999999
Q ss_pred ceeeccCCCCceeEEEEecCccccC------------------------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 179 KIEEIELPVTKVDIIISEWMGYFLL------------------------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 179 d~~~~~~~~~~~D~Iv~~~~~~~l~------------------------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+.+.. +.++||+|+++++ |.-. +......++..+.++|+|||.++.
T Consensus 166 d~~~~~-~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 166 DWFEPL-PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cccCcC-CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 986532 2478999999864 2211 112245778888899999999984
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.3e-12 Score=125.46 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=86.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee--ccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~ 190 (379)
+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++. ++...+++++++|+.. +++++++|
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCE
Confidence 3334444567899999999999999999974 5999999999 99887653 2223569999999964 45666899
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|+|++..+.+++. ...+..++.++.++|||||++++..
T Consensus 105 D~I~~~~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 105 DLIFSNWLLMYLS-DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred EEEehhhhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999987655443 2346899999999999999998654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=109.61 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=94.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
|.....+.+|.+|||.|.|+|.++..+|+. +.++|+.+|+.+ +++.|++|+...++.++|++..+|+.+...+ +.|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 556678899999999999999999999983 448999999999 9999999999999988899999999998777 599
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|.|+.++ +++-.++..+...|||||.++.
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEEE
Confidence 9999875 5778999999999999999873
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=114.52 Aligned_cols=126 Identities=25% Similarity=0.311 Sum_probs=92.6
Q ss_pred hHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 016992 97 HEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (379)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (379)
....+.++..++.+.+.+......... +|||+|||+|.+++.++.. +...|+|+|+|+ +++.|++|+..+++ .++.
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~ 163 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVL 163 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEE
Confidence 334555666677777765422222222 8999999999999999995 446999999999 99999999999998 5677
Q ss_pred EEEcceeeccCCCCceeEEEEecCccccCC-----------h------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 175 ~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.+|..+- +. ++||+|||+++ |.-.. + .....++..+.+.|+|||.++.
T Consensus 164 ~~~~dlf~~-~~-~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 164 VVQSDLFEP-LR-GKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred EEeeecccc-cC-CceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 777765543 23 58999999974 43221 1 1236788888999999999883
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=107.87 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.++..++.+|+++|.++ +++.++++++.+++. +++++++|+.+.. ...++||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 46789999999999999976655678999999999 999999999999984 6999999987642 12357999999986
Q ss_pred ccccCChhhHHHHHHHHHh--cccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDK--WLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~ 228 (379)
|. .+....++..+.. +|+|+|.++.+
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 32 2445555665544 47898888754
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=108.95 Aligned_cols=101 Identities=19% Similarity=0.106 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEcceeeccC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (379)
.++.+|||+|||.|..+..+|+.|. +|+|||+|+ +++.+.+ ++++ ..+|+++++|+.+++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4677999999999999999999987 999999999 9997643 2222 1358999999998764
Q ss_pred C-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .+.||.|+...+... ........++..+.++|||||.++
T Consensus 109 ~~~~~fD~i~D~~~~~~-l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIA-LPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred ccCCCcCEEEechhhcc-CCHHHHHHHHHHHHHHcCCCCeEE
Confidence 2 367999987543222 244566789999999999999865
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=103.92 Aligned_cols=77 Identities=29% Similarity=0.340 Sum_probs=69.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
......|++|+|+|||||.+++.++-+|+..|+|||+++ +++.+++|..+.+ .+|.|+++|+.++. .++|.++.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC---CccceEEE
Confidence 456678999999999999999999999999999999999 9999999999843 67999999999885 66899999
Q ss_pred ecC
Q 016992 196 EWM 198 (379)
Q Consensus 196 ~~~ 198 (379)
+++
T Consensus 115 NPP 117 (198)
T COG2263 115 NPP 117 (198)
T ss_pred CCC
Confidence 874
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=118.21 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~ 195 (379)
...+..+||||||+|..+..+|+. +...++|+|++. ++..|.+++..+++. ++.++++|+..+ .++++++|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEE
Confidence 345679999999999999999984 567999999999 999999999999985 599999999765 356789999998
Q ss_pred ecCccccCCh-h--hHHHHHHHHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFE-N--MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.......-.. . ..+.++.++.++|+|||.+...
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 6432211000 0 1268899999999999998753
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=111.88 Aligned_cols=108 Identities=25% Similarity=0.256 Sum_probs=85.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.+......+.+|||+|||.|.+++.+++. +..+++-+|.|. +++.|++++..|++.+. .++..|..+-. . ++||
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~-~kfd 226 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-E-GKFD 226 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-c-cccc
Confidence 455555555669999999999999999995 568999999999 99999999999998653 66666665543 3 4999
Q ss_pred EEEEecCccccCChhhH----HHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENML----NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~----~~~l~~~~~~LkpgG~li 226 (379)
+|||+++.+- +.... ..++....+.|++||.|.
T Consensus 227 ~IisNPPfh~--G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 227 LIISNPPFHA--GKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred EEEeCCCccC--CcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 9999986332 22233 388999999999999876
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=111.21 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhccC-CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee
Q 016992 105 VRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~-~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (379)
..++.+.+.+..... ...+.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++ ++++++|+.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeech
Confidence 345555555543322 12345899999999999999987 4446999999999 9999999998875 478889987
Q ss_pred eccC--CCCceeEEEEecCccccC------------C------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 182 EIEL--PVTKVDIIISEWMGYFLL------------F------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 182 ~~~~--~~~~~D~Iv~~~~~~~l~------------~------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... ..++||+|+++++ |.-. + ...+..++..+.++|+|||+++.
T Consensus 144 ~~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 144 DALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred hhcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5321 1257999999975 3211 0 11245788888899999999984
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-12 Score=109.36 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=87.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
.....+..+|.|||||+|..+..+++ .+...|+|+|.|+ |++.|+++. .+++|..+|+.++..+ ..+|+++
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~-~~~dllf 97 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPE-QPTDLLF 97 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCC-Cccchhh
Confidence 35556778999999999999999998 5778999999999 999997654 3489999999999755 8899999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
++.+...+ ++-..++..+...|.|||++-.+....
T Consensus 98 aNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 98 ANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 98875555 555678888889999999997544433
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=106.88 Aligned_cols=103 Identities=23% Similarity=0.199 Sum_probs=83.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.+.+.+.++.+|||||||+|..+..+|+.. .+|+++|..+ .++.|++++...|+.+ |.++++|...-..+..+||.
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~ 141 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDR 141 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCE
Confidence 4455678899999999999999999999973 3999999999 9999999999999965 99999998876555589999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+...-.. ..+ ..+.+.||+||+++.
T Consensus 142 I~Vtaaa~-----~vP----~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 142 IIVTAAAP-----EVP----EALLDQLKPGGRLVI 167 (209)
T ss_pred EEEeeccC-----CCC----HHHHHhcccCCEEEE
Confidence 99754211 122 234478999999873
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=113.81 Aligned_cols=124 Identities=23% Similarity=0.231 Sum_probs=90.6
Q ss_pred cCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcc
Q 016992 102 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGK 179 (379)
Q Consensus 102 ~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d 179 (379)
-|...+..+.... .+|++|||+-|=||.++++++..|+.+|++||.|. +++.|++++..||++ +++++++.|
T Consensus 109 lDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~D 182 (286)
T PF10672_consen 109 LDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGD 182 (286)
T ss_dssp GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-
T ss_pred HHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC
Confidence 3445555554333 46889999999999999999999999999999999 999999999999986 689999999
Q ss_pred eeeccC---CCCceeEEEEecCccccCC---hhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 180 IEEIEL---PVTKVDIIISEWMGYFLLF---ENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 180 ~~~~~~---~~~~~D~Iv~~~~~~~l~~---~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+.+.-- ..++||+||++|+.+.-.. ..+...++..+.++|+|||.++.++|+
T Consensus 183 vf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 183 VFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 976421 1468999999987543211 234567888889999999999865543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=111.64 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C----CCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~D 191 (379)
.++++|||+|||+|..++.+++. +.++|+++|+++ +++.|+++++.+|+.++|+++.+|+.+.- + +.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 56789999999999988888873 457999999999 99999999999999889999999997741 1 136899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+|+.+.. ......++..+.++|+|||.++....-
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9997642 145567888889999999999865543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=112.89 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C---CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g---~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..+.+|||+|||+|.++..+++. + ...|+|+|+|+ |++.|+++. .++.++.+|+.++++++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 35578999999999999988874 2 23799999999 999997653 3488999999999888889999997
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
... +..+.++.|+|||||.++.
T Consensus 158 ~~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 158 IYA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred ecC----------CCCHHHHHhhccCCCEEEE
Confidence 431 1235778899999999983
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=116.97 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=94.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeecc----CCCCceeEEEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (379)
.|++|||+-|=||.+++++|..|+++|++||.|. .+++|++|+.-||+. +++.++++|+.++- -...+||+||.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4999999999999999999999999999999999 999999999999985 66899999998763 22468999999
Q ss_pred ecCccccCCh-------hhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 196 EWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 196 ~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
+|+.+ ..+. .+...++..+.++|+|||.++.++|+-..
T Consensus 297 DPPsF-~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 297 DPPSF-ARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred CCccc-ccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 98643 3332 23467888889999999999977666543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=109.48 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~----g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (379)
..++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++.... ++++...++..++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356779999999999998888752 3 24999999999 999998876543 3566667776666666899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++..+.+++. ...+..+++++.++++ |+.++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC-eeEEE
Confidence 9975434332 2235689999999998 44443
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=108.42 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~----g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
.+.+|||+|||+|.+++.+++. +..+|++||+++ +++.|++++. ++.++++|+....+. ++||+||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999998873 345899999999 9999997752 378999999876654 789999999
Q ss_pred cCccccCCh----------hhHHHHHHHHHhcccCCEEEEecCC
Q 016992 197 WMGYFLLFE----------NMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 197 ~~~~~l~~~----------~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
++ |+.... .....++....+++++|+.++|...
T Consensus 122 PP-Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 122 PP-FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CC-CCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 75 442211 1245678888889999998888653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-11 Score=112.29 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=81.1
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.....++.+|||+|||+|.++..+++. +. ++|+++|.++ +++.|+++++.+++ +++.++++|+.+......+|
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCc
Confidence 333445678899999999999999999984 32 4799999999 99999999999998 46999999987665444679
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++.. ++ ..+...+.+.|+|||.++.
T Consensus 151 D~Ii~~~---g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 151 DVIFVTV---GV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred cEEEECC---ch------HHhHHHHHHhcCCCCEEEE
Confidence 9999742 22 1223445678999999774
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-11 Score=107.35 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CCCCc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVTK 189 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 189 (379)
..++.+|||||||+|.++..+++. + ..+|+|||+++|. ++ .+++++++|+.+.. +..++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PI-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CC-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 467889999999999999999885 3 3699999998731 22 24899999998853 44578
Q ss_pred eeEEEEecCccccCCh--h------hHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFE--N------MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~--~------~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|+|++..+..... . ....++..+.++|||||.++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999998643332211 0 124688999999999999983
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=108.59 Aligned_cols=103 Identities=22% Similarity=0.216 Sum_probs=77.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.+.+.+|.+|||||||+|..+..+++. |. .+|++||..+ +++.|++++...++. +|.++++|......+..+|
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SE
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCc
Confidence 445566889999999999999999999995 43 4799999999 999999999999984 6999999987654445789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|.|++... .. ..+ ..+.+.|++||+++
T Consensus 143 D~I~v~~a---~~--~ip----~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 143 DRIIVTAA---VP--EIP----EALLEQLKPGGRLV 169 (209)
T ss_dssp EEEEESSB---BS--S------HHHHHTEEEEEEEE
T ss_pred CEEEEeec---cc--hHH----HHHHHhcCCCcEEE
Confidence 99997532 21 222 33557899999988
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-11 Score=111.06 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~ 197 (379)
.++++|||||||+|.++..+++ .+..+|++||+++ +++.|++++...+..++++++.+|+.++. ...++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999887 4667999999999 99999998876555467999999987652 1136899999875
Q ss_pred Cccc-cCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.... ....-....++..+.+.|+|||+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 3211 11001236889999999999999984
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=114.30 Aligned_cols=180 Identities=15% Similarity=0.067 Sum_probs=126.3
Q ss_pred CCCcccccceeeccccccccccccccccCCCCcCCCCCcccccccccCCCcccCCCCCCCccchhhhhccCcchhhHHhh
Q 016992 22 SNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEML 101 (379)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l 101 (379)
=|+.+.+.+.+.+.+..++...+......+.+.. .......+.....|.+++...+...+|+
T Consensus 15 vN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~------------------~~~~~~~i~~l~~~~~G~~~vQd~sS~l 76 (283)
T PF01189_consen 15 VNTLKISREELLEELEEEGIQLEPIPRSPDALRV------------------IGKSPYSICSLPEFKNGLFYVQDESSQL 76 (283)
T ss_dssp E-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEE------------------EEECSSCGGGSHHHHTTSEEEHHHHHHH
T ss_pred ECcCcCCHHHHHHHHhhcccceEEcccccchhcc------------------ccccccchhhchhhhCCcEEeccccccc
Confidence 3566666676666666666554444333222100 0112233444567888887766665554
Q ss_pred cCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc
Q 016992 102 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178 (379)
Q Consensus 102 ~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~ 178 (379)
....+...+|..|||+|+|+|+.+.+++.. + .+.|+++|++. .+...++++++.|+. ++.++..
T Consensus 77 ------------~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~ 143 (283)
T PF01189_consen 77 ------------VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINA 143 (283)
T ss_dssp ------------HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEES
T ss_pred ------------ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEee
Confidence 222356789999999999999999999994 3 57999999999 999999999999995 5888888
Q ss_pred ceeecc--CCCCceeEEEEecCccccCC---hhh----------------HHHHHHHHHhcc----cCCEEEEecCCce
Q 016992 179 KIEEIE--LPVTKVDIIISEWMGYFLLF---ENM----------------LNTVLYARDKWL----VDDGIVLPDKASL 232 (379)
Q Consensus 179 d~~~~~--~~~~~~D~Iv~~~~~~~l~~---~~~----------------~~~~l~~~~~~L----kpgG~lip~~~~~ 232 (379)
|..... .....||.|+.+.++++... .++ -..+|+...+++ ||||++++++|++
T Consensus 144 D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 144 DARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 888762 22246999999998887621 111 147889999999 9999999999886
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-11 Score=105.34 Aligned_cols=101 Identities=22% Similarity=0.162 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEcceeeccC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (379)
.++.+|||+|||.|..+..+|+.|. +|+|||+|+ +++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4677999999999999999999987 999999999 9987642 2322 2568999999998854
Q ss_pred C-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. ...||.|+...+.. .........++..+.++|+|||.++
T Consensus 112 ~~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 25799999765323 2345667899999999999998644
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-11 Score=102.88 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=80.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.+.....++.+|||+|||+|.++..+++. ..+|+++|+++ +++.+++++... ++++++++|+.++++++..+|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCE
Confidence 444455677889999999999999999998 46999999999 999999887542 4699999999998877567999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+++++ |.+ ..+.+..++... .+.++|.++.
T Consensus 81 vi~n~P-y~~-~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 81 VVGNLP-YNI-STPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred EEECCC-ccc-HHHHHHHHHhcC--CCcceEEEEE
Confidence 999864 433 223444444321 2457777774
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=105.54 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ |++.|++++...+..+++.++.+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999865 799999999 999999999888876679999998443 3478999998543
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+++ ....+..+++.+.+.+++++.+.
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 2221 23456788888888776555443
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=106.15 Aligned_cols=128 Identities=21% Similarity=0.239 Sum_probs=96.9
Q ss_pred hhcCHHHHHHHHHHHHhccC---CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 016992 100 MLKDVVRTKSYQNVIYQNKF---LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (379)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~---~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (379)
.+-++..++.|.+++..... ...+..+||+|||+|.+++.++. .+...|+|||.|+ ++..|.+|++++++.+++.
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 44556678888887765432 34556899999999999999888 6788999999999 9999999999999999999
Q ss_pred EEEcceeec-----cCCCCceeEEEEecCccccCCh------------------------hhHHHHHHHHHhcccCCEEE
Q 016992 175 VLKGKIEEI-----ELPVTKVDIIISEWMGYFLLFE------------------------NMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 175 ~~~~d~~~~-----~~~~~~~D~Iv~~~~~~~l~~~------------------------~~~~~~l~~~~~~LkpgG~l 225 (379)
+++-+++.- ++..+++|+++|+++ |....+ ..+..+..-..|+|+|||.+
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 997665542 233589999999974 432211 01234556667999999998
Q ss_pred Eec
Q 016992 226 LPD 228 (379)
Q Consensus 226 ip~ 228 (379)
.++
T Consensus 282 ~le 284 (328)
T KOG2904|consen 282 QLE 284 (328)
T ss_pred EEE
Confidence 743
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=113.49 Aligned_cols=138 Identities=18% Similarity=0.038 Sum_probs=107.9
Q ss_pred chhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcC---CCEEEEEecHH-HHHH
Q 016992 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANM 159 (379)
Q Consensus 84 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g---~~~v~~vD~s~-~~~~ 159 (379)
...|-+++...+...+|+ ....+...+|.+|||+|+++|+.+.++|+.. ...|+++|.++ -+..
T Consensus 130 ~~~~~~G~~~vQd~sS~l------------~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~ 197 (355)
T COG0144 130 LPEFAEGLIYVQDEASQL------------PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKR 197 (355)
T ss_pred ChhhhceEEEEcCHHHHH------------HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHH
Confidence 346777777776666665 2334678899999999999999999999952 24579999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecCccccCCh---hh----------------HHHHHHHHHh
Q 016992 160 AKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWMGYFLLFE---NM----------------LNTVLYARDK 217 (379)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~~~~l~~~---~~----------------~~~~l~~~~~ 217 (379)
.++++++.|+.+ +.+++.|...++ ...++||.|+.+.+|++.... ++ -..+|....+
T Consensus 198 l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~ 276 (355)
T COG0144 198 LRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALK 276 (355)
T ss_pred HHHHHHHcCCCc-eEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999965 888888876553 222369999999888765321 11 1478899999
Q ss_pred cccCCEEEEecCCceEE
Q 016992 218 WLVDDGIVLPDKASLYL 234 (379)
Q Consensus 218 ~LkpgG~lip~~~~~~~ 234 (379)
+|||||.|++++|++..
T Consensus 277 ~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 277 LLKPGGVLVYSTCSLTP 293 (355)
T ss_pred hcCCCCEEEEEccCCch
Confidence 99999999999999754
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-11 Score=103.12 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C--CCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~D~Iv~ 195 (379)
.++.+|||++||+|.+++.++..|+.+|++||.++ +++.++++++.+++.++++++++|+.+.. + ....+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46889999999999999999999998999999999 99999999999998778999999996531 1 1124799998
Q ss_pred ecCccccCChhhHHHHHHHH--HhcccCCEEEEecC
Q 016992 196 EWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPDK 229 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~~ 229 (379)
+++ |.. .....++..+ ..+|+++|.++...
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 874 432 2334444444 35799999888543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=110.30 Aligned_cols=107 Identities=11% Similarity=-0.006 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCC----ceeE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVDI 192 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~----~~D~ 192 (379)
.++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.|++++....-.-+|.++++|+.+. +++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466899999999999999998863 35999999999 9999998877643223478899999873 44322 1223
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++... .+.........+++.+.+.|+|||.++..
T Consensus 142 ~~~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEeccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 332221 22234556778999999999999999853
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=115.97 Aligned_cols=112 Identities=22% Similarity=0.154 Sum_probs=86.8
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (379)
++.+.+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ |++.|+++++.+++. +++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence 45556666655556788899999999999999999875 5999999999 999999999999984 5999999997542
Q ss_pred ---CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+...+||+|+++++-.++ ..++..+.+ ++|++.++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEE
Confidence 234679999999863322 244555544 688887763
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-11 Score=106.34 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=84.1
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (379)
.|.....+.||.+|||.|+|+|.++..+++. +.++|+..|..+ .++.|+++++..|+.++|++.+.|+.+.-++
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 3555678899999999999999999999984 458999999999 9999999999999998999999999754332
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcc-cCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~li 226 (379)
+..+|.|+.++ +.+-.++..+.+.| ++||+++
T Consensus 111 ~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 111 ESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEE
T ss_pred cCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEE
Confidence 36799999886 34556778888999 8999987
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.7e-11 Score=124.89 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=100.1
Q ss_pred chhhHHhhcCHHHHHHHHHHHHhccC-CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC
Q 016992 94 FGIHEEMLKDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS 170 (379)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~ 170 (379)
+......+-++..++.+.+.+..... ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++|++.+++.
T Consensus 89 ~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 34455567677778888877543211 124579999999999999999984 457999999999 999999999987542
Q ss_pred ---------------CcEEEEEcceeeccCC-CCceeEEEEecCccccCC------------------------------
Q 016992 171 ---------------NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF------------------------------ 204 (379)
Q Consensus 171 ---------------~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~------------------------------ 204 (379)
++++++++|+.+.... ..+||+||++++ |....
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~ 247 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF 247 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence 4799999998765322 136999999874 33211
Q ss_pred ------hhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 205 ------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 205 ------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
...+..++....++|+|||.++...+
T Consensus 248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 01235777888899999999986654
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=109.67 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.+++.+ .+|+|+|+++ +++.|+++++.+++ ++++++++|+.++.. ..++||+|+++++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 457899999999999999999976 5999999999 99999999999998 579999999987642 2357999999986
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-.++ ...++..+.+ ++|++.++
T Consensus 250 r~G~-----~~~~~~~l~~-~~~~~ivy 271 (315)
T PRK03522 250 RRGI-----GKELCDYLSQ-MAPRFILY 271 (315)
T ss_pred CCCc-----cHHHHHHHHH-cCCCeEEE
Confidence 4332 2233333333 57776655
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=106.53 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=77.0
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (379)
+.+.++.+|||+|||+|.++.++++. + ...|+|||+++ |.+.+.+.+... .+|.++..|+... ....+.||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCC
Confidence 45688999999999999999999995 3 46999999998 776555544432 4588999998642 12236799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.. .......++.++.++|||||.|+.
T Consensus 205 vV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999852 113444666788999999999984
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=89.75 Aligned_cols=101 Identities=31% Similarity=0.343 Sum_probs=81.1
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEecCcccc
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 202 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l 202 (379)
+|+|+|||+|.++..+++.+..+++++|.++ ++..+++.....+. .+++++..|+.+... ..+++|+|++..+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999885567999999999 99988864443333 569999999988764 34789999987653331
Q ss_pred CChhhHHHHHHHHHhcccCCEEEEec
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
......++..+.+.|+|||.++..
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 467789999999999999999854
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=105.68 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+.+|||+|||+|.+++.+++. +..+|+++|+++ |++.++++. .+++++++|+.++... .+||+|+++++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~-~kFDlIIsNPP- 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESN-EKFDVVISNPP- 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhccc-CCCcEEEEcCC-
Confidence 4568999999999999988774 346999999999 999998763 2588999999987644 78999999975
Q ss_pred cccCChhh------------------HHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENM------------------LNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~------------------~~~~l~~~~~~LkpgG~li 226 (379)
++...... +..++.....+|+|+|.++
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 33322221 2345566667788887654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=108.49 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...+. ..++++...|+.++ +++||+|+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999865 999999999 99999999876522 13578888887654 378999998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+..++.. .....++..+.+ +.+||.++
T Consensus 219 ~~vL~H~p~-~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQ-DKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCH-HHHHHHHHHHHh-hcCCEEEE
Confidence 543222221 233456666664 46777665
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=108.20 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C--CCcEEEEEcceeecc-CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~-~~~~~~D~I 193 (379)
..+++||+||||+|.++..+++. +..+|++||+++ +++.|++.+...+ . ..+++++.+|+..+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999886 678999999999 9999999886532 2 367999999988753 234789999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEecC
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+++.......... ....+++.+.+.|+|||+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9975432211111 12577888999999999998543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-11 Score=102.41 Aligned_cols=104 Identities=29% Similarity=0.370 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C--CCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~D~Iv~ 195 (379)
.+|.+|||+.||+|.+++.+...|+++|+.||.+. .+..+++|++..++.+++++++.|+...- . ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 58899999999999999999999999999999999 99999999999999888999999975432 1 3589999999
Q ss_pred ecCccccCChhh-HHHHHHHHH--hcccCCEEEEec
Q 016992 196 EWMGYFLLFENM-LNTVLYARD--KWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~lip~ 228 (379)
+|+ |.. .. ...++..+. .+|+++|.++..
T Consensus 121 DPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 121 DPP-YAK---GLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp --S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred CCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 975 443 33 366777665 799999999843
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=101.79 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=73.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--------C
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (379)
.....++.+|||+|||+|.++..+++. +..+|+++|+++ + .. .++.++++|+.+.. +
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 345678999999999999999988874 446899999999 5 12 34788988987643 3
Q ss_pred CCCceeEEEEecCccc-----cCC---hhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYF-----LLF---ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~-----l~~---~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.++||+|+++...++ +.+ ......++..+.++|+|||.++.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 4468999998642211 111 11246889999999999999884
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=108.07 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---------CCCCcEEEEEcceeecc----CC-
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFSNVITVLKGKIEEIE----LP- 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~----~~- 186 (379)
++.+|||||||-|+-..-..+.+..+++|+|++. .++.|+++.... ...-...++.+|..... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7889999999999888888888889999999999 999999998321 11123677888776432 22
Q ss_pred -CCceeEEEEec-CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 -VTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 -~~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+||+|-|-. +.|.+..+.....+|.++...|+|||+||
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 25999999965 56666778888899999999999999998
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=106.47 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=98.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceeeccCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (379)
.+.+++.......+|..|||--||||.+.+.+.-.|+ +++|+|++. |+.-|+.|+...++.+ ..+... |+..++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4455666667789999999999999999999999987 999999999 9999999999998865 555555 99999998
Q ss_pred CCceeEEEEecCccccCC-------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..++|.|+++++ |+-.. +..+..+++.+.++||+||++++
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 677999999974 65433 24467889999999999999884
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=105.72 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=92.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-----CcEEEEEcceee
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-----NVITVLKGKIEE 182 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-----~~i~~~~~d~~~ 182 (379)
.|.+.++-..-..++..++|+|||-|+-++-.-++|.+.++|+|+.+ .++.|+++.+...-. -.+.|+.+|...
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 44444443344578889999999999999999899999999999999 999999988653211 137899998764
Q ss_pred c------cCCCCceeEEEEec-CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 183 I------ELPVTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 183 ~------~~~~~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. ++++.+||+|-|.. +.|.+..+.....+|.++.+.|+|||++|-
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 3 23456699999864 445556677788999999999999999983
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=101.12 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=92.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-cceee
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEE 182 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~ 182 (379)
.-.|...+.+ ....++||+||++.|..++.+|. .+ ..++++||.++ +++.|++++++.|+.++|.++. +|+.+
T Consensus 47 ~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 47 TGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 3345554543 35778999999999999999998 45 57999999999 9999999999999999899999 58765
Q ss_pred ccC--CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 183 IEL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 183 ~~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
.-. ..++||+|+.+.- ....+.++..+.++|+|||.++....
T Consensus 124 ~l~~~~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 124 VLSRLLDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHhccCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 432 3589999997641 25568899999999999999995543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=104.74 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C----CCCce
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (379)
..+.++|||||+|+|..++.+|+. + .++|+++|.++ .++.|+++++++|+.++|+++.+|+.+.- + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 356789999999999999999983 3 46899999999 99999999999999989999999987642 1 13689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
|+|+.+.- ......++..+.++|+|||.++....
T Consensus 196 D~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 99997652 25567888888999999999986544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=100.51 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=89.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (379)
.+...+.+. ...++||+|||++|..++.+|+. + .++|+.+|.++ ..+.|+++++..|+.++|+++.+|+.+.-
T Consensus 35 ~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 35 QLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 344444432 45679999999999999999984 3 46999999999 99999999999999999999999997642
Q ss_pred -----CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 185 -----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 185 -----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
.+.++||+|+.+.- .......+..+.++|+|||.++....-
T Consensus 112 ~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 11258999998752 245667888888999999999955433
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-10 Score=96.07 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=86.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcC-CCE---------EEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAH---------VYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~---------v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
....++.......++..|||-.||+|.+.+.++..+ ... ++|+|+++ +++.|++|+...++.+.|.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 444556666677889999999999999999988742 223 89999999 9999999999999988899999
Q ss_pred cceeeccCCCCceeEEEEecCccccCCh------hhHHHHHHHHHhcccCCEEEE
Q 016992 178 GKIEEIELPVTKVDIIISEWMGYFLLFE------NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~~~------~~~~~~l~~~~~~LkpgG~li 226 (379)
.|+.++++..+.+|+||++++ |+.... .....+++++.++|++..+++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999966689999999974 654321 223567788889999955554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=110.01 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.++.+.+.+.......++.+|||+|||+|.+++.+++. +.+|+|+|+++ +++.|++++..+++ ++++++++|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHH
Confidence 34444555555555567789999999999999999986 45999999999 99999999999998 46999999997641
Q ss_pred ----CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....+||+|+.+++-.++ ...+++.+.+ ++|++.++.
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~-----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC-----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC-----CHHHHHHHHh-cCCCEEEEE
Confidence 223579999998764332 2455555544 789887653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-11 Score=106.82 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=89.2
Q ss_pred hhhhhccCcchhhHHhhcCHH--HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVV--RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAK 161 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~--r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~ 161 (379)
+..|+.|++.-. .+|-+.. ........+.......+=+++||+|||||..+..+... +.+++|||+|. |++.|.
T Consensus 88 e~LFD~~Ae~Fd--~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~ 164 (287)
T COG4976 88 ETLFDQYAERFD--HILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAH 164 (287)
T ss_pred HHHHHHHHHHHH--HHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHH
Confidence 456777765221 2222221 22233333333344444579999999999999988776 56999999999 999997
Q ss_pred HHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 162 QIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
++--. + ++.+.++..+. ...++||+|++.-+ +.+.+.+..++-.....|+|||.|.++.-
T Consensus 165 eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~AaDV---l~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 165 EKGLY----D--TLYVAEAVLFLEDLTQERFDLIVAADV---LPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred hccch----H--HHHHHHHHHHhhhccCCcccchhhhhH---HHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 65211 1 23444544332 33589999997433 44558899999999999999999987643
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-10 Score=107.04 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.++..+ .+|+|||+++ +++.|+++++.+++. +++++++|+.++... ..+||+|+.+++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456799999999999999999875 5999999999 999999999999984 799999999775321 246999999986
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-. +....++..+.+ ++|++.++
T Consensus 310 r~-----G~~~~~l~~l~~-~~p~~ivy 331 (374)
T TIGR02085 310 RR-----GIGKELCDYLSQ-MAPKFILY 331 (374)
T ss_pred CC-----CCcHHHHHHHHh-cCCCeEEE
Confidence 33 223455555543 78988776
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=97.83 Aligned_cols=99 Identities=31% Similarity=0.309 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..+|.+|+|+.||-|.+++.+|+ ...+.|+|+|+++ .++.++++++.|++.++|.++++|+.++.. ...+|.|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 57899999999999999999999 4467999999999 999999999999999999999999998865 48999999876
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... ..++..+..++++||++-
T Consensus 178 p~~~-------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESS-------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred hHHH-------HHHHHHHHHHhcCCcEEE
Confidence 5322 256677778899999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=99.35 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~Iv~~~ 197 (379)
.++.+|||+|||+|.++..+++.+...++|+|+++ +++.+++ .+++++++|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 46789999999999999988875445889999999 9988864 236788889876 3 25567899999865
Q ss_pred CccccCChhhHHHHHHHHHhcccCC
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
+ +.+..++..+++++.+.++++
T Consensus 84 ~---l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 84 T---LQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred H---hHcCcCHHHHHHHHHHhCCeE
Confidence 4 344467788888888877654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-10 Score=101.66 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=93.4
Q ss_pred HHHHHHHHhc--cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-CCcEEEEEcceeec
Q 016992 108 KSYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-SNVITVLKGKIEEI 183 (379)
Q Consensus 108 ~~~~~~i~~~--~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~-~~~i~~~~~d~~~~ 183 (379)
.-|..++.+. ....+|.+|||.|.|-|..++.+++.|+.+|+.+|.++ .++.|.-|-=..++ ...|+++.+|+.++
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 3455555543 33457999999999999999999999999999999999 99888644211111 13489999999886
Q ss_pred c--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. +++++||+|+.+++-+.+-++---..+.++++|+|||||.++
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 4 668999999999987666554445788999999999999998
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-10 Score=95.68 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=70.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (379)
+.+|.+|||||||.|.+...+.+....+.+|||+++ .+..+.+ ..+.++++|+.+- .+++++||.||..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 468999999999999999998884455999999999 7776654 2367999999764 2678999999953
Q ss_pred cCccccCChhhHHHHHHHHHhccc
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLV 220 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~Lk 220 (379)
..+.....+..+|.++.|+-|
T Consensus 83 ---qtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 83 ---QTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred ---hHHHhHhHHHHHHHHHHHhcC
Confidence 445555677888888876644
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-10 Score=95.84 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=74.1
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcC--CCCcEEEEEcceeecc----CCCCce
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~~ 190 (379)
....++.+|||||||+|..++.+++. +..+|+..|.++.++.++.+++.|+ ...++.+...|..+.. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 34578899999999999999999997 7789999998888899999999987 5567888887764411 234689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|++.-+ +..+...+.+++.+.++|+++|.++
T Consensus 121 D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 99997433 4456788899999999999998855
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=101.88 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcceeecc--CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
..+++||+||||.|.++..+++.+ ..+|+.||+++ +++.|++.+... ++ ..+++++.+|+.... .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 456899999999999999999964 57999999999 999999988653 23 258999999986652 224689999
Q ss_pred EEecCccccCCh-hhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 194 ISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 194 v~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
+++......... -.-..+++.+.+.|+|||+++......+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 997543211100 0135788899999999999986544433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=91.48 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCC-CCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELP-VTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~~D~Iv~~ 196 (379)
..|.+|||+-+|+|.+++.++..|+.+++.||.+. .+..+++|++..++..+++++..|+... ... .+.||+|+.+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 68999999999999999999999999999999999 9999999999999888899999999854 122 1349999999
Q ss_pred cCccccCChhhH--HHHHHH--HHhcccCCEEEEecCC
Q 016992 197 WMGYFLLFENML--NTVLYA--RDKWLVDDGIVLPDKA 230 (379)
Q Consensus 197 ~~~~~l~~~~~~--~~~l~~--~~~~LkpgG~lip~~~ 230 (379)
++ |. .+.+ ...+.. -..+|+|+|.++....
T Consensus 122 PP-y~---~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PP-YA---KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CC-Cc---cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 85 43 1333 222222 4578999999986543
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=102.01 Aligned_cols=108 Identities=23% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHH--H---HcCC-CCcEEEEEcceeecc-CCCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIV--E---ANGF-SNVITVLKGKIEEIE-LPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~--~---~~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (379)
...++||+||||+|..+..+.+. +..+|++||+++ +++.|++.. . ...+ ..+++++.+|+.++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45579999999999998888886 457999999999 999999621 1 1122 368999999998753 2347899
Q ss_pred EEEEecCccccC--ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|+++....... ..-.-..++..+.+.|+|||+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999986422110 0011256888999999999998854
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-10 Score=98.35 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=80.9
Q ss_pred EEEEEcCCCchHHHHHHHc-CC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEe
Q 016992 125 VVLDVGAGTGILSLFCAKA-GA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~-g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (379)
+||+||||.|.....+.+. +. -.|+++|.|+ +++..+++...+. .++.....|+..-. ...+++|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999988884 22 5899999999 9999998876654 44555555554332 335889999986
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
.+.+.+. .+....++.++.++|||||.+++..+..|.
T Consensus 152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 5544443 345678999999999999999977655544
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=96.06 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=76.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc----------------------------
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN---------------------------- 167 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~---------------------------- 167 (379)
.....+..+|||||.+|.++..+|+ .|...|.|+|+++ .+..|++++...
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 4456788999999999999999999 6889999999999 999999987431
Q ss_pred ------CCCCcEEEEEcceee-----ccCCCCceeEEEEecC--cccc-CChhhHHHHHHHHHhcccCCEEEE
Q 016992 168 ------GFSNVITVLKGKIEE-----IELPVTKVDIIISEWM--GYFL-LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 168 ------~~~~~i~~~~~d~~~-----~~~~~~~~D~Iv~~~~--~~~l-~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+++++.+...+..- +.+....||+|+|-.+ .-+| .+..-+..++..+.++|.|||++|
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 011122222221110 1123478999998321 1122 234457899999999999999998
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-09 Score=97.66 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeecc-CCCCceeEEEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (379)
.+++||+||||+|.++..+++.+ ..+|+++|+++ +++.|++.+...+ + ..+++++.+|+.+.. ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45599999999999998888864 67999999999 9999999876532 1 246888888876542 11378999999
Q ss_pred ecCccccCChh-hHHHHHHHHHhcccCCEEEEecC
Q 016992 196 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 196 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+.......... ....+++.+.+.|+|||+++...
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 86422111111 13577889999999999998653
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=94.50 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH------H-c----CCCCcEEEEEcceeeccCC--
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE------A-N----GFSNVITVLKGKIEEIELP-- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~------~-~----~~~~~i~~~~~d~~~~~~~-- 186 (379)
.++.+||+.|||.|.-+..+|..|. +|+|+|+|+ .++.+.+... . . --..+|+++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4678999999999999999999988 799999999 9988755210 0 0 0014699999999998632
Q ss_pred -CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.++||+|+-... ++.....+.....+.+.++|+|||.++
T Consensus 121 ~~~~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 121 NLPVFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred ccCCcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 258999987543 334456777899999999999999987
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=99.58 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEE-cceeecc----CCCCceeEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 193 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~~D~I 193 (379)
++.+|||||||+|.+...++. ....+++|+|+++ +++.|+++++.+ ++.++|+++. .+...+. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999977666655 4446999999999 999999999999 7988898864 3333321 234789999
Q ss_pred EEecCccccCC
Q 016992 194 ISEWMGYFLLF 204 (379)
Q Consensus 194 v~~~~~~~l~~ 204 (379)
+|+++ |+-..
T Consensus 194 vcNPP-f~~s~ 203 (321)
T PRK11727 194 LCNPP-FHASA 203 (321)
T ss_pred EeCCC-CcCcc
Confidence 99985 44433
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=97.01 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C-C----CCce
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~----~~~~ 190 (379)
.+.++||+||+++|..++.+|+. + .++|+++|.++ ..+.|+++++..|+.++|+++.+++.+.- + + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45679999999999999999984 3 46999999999 99999999999999999999999987742 1 0 2689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
|+|+.+.- .......+..+.++|+|||.++....-+
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 99997642 2445677788889999999998654443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.3e-09 Score=89.41 Aligned_cols=94 Identities=26% Similarity=0.333 Sum_probs=79.9
Q ss_pred EEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcccc
Q 016992 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (379)
+++|||+|.|.-++.+|- .+..+++.+|.+. .+...+..+...+++ +++++++++++ .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehh----
Confidence 899999999999999888 5667999999999 999999999999995 69999999999 333489999999886
Q ss_pred CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+..++.-+..+|++||.++.
T Consensus 125 ---~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 125 ---APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ---SSHHHHHHHHGGGEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCCEEEE
Confidence 4567888999999999999984
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=108.24 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHH--HHH---cCCC-CcEEEEEcceeecc-CCCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQI--VEA---NGFS-NVITVLKGKIEEIE-LPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~--~~~---~~~~-~~i~~~~~d~~~~~-~~~~~~D 191 (379)
.++++|||||||+|..+..+++.+. .+|++||+++ +++.++++ +.. ..+. .+++++.+|+.+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998754 7999999999 99999983 222 1222 57999999998743 2247899
Q ss_pred EEEEecCccccCCh--hhHHHHHHHHHhcccCCEEEEecCC
Q 016992 192 IIISEWMGYFLLFE--NMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+|++++........ -.-..+++.+.+.|+|||.++.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99998643221100 1124678889999999999986543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-09 Score=97.72 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=72.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++...+..++++++++|+.+.++ ..|
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~ 102 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYF 102 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--ccc
Confidence 345555566788999999999999999999874 5899999999 999999999887755689999999988765 468
Q ss_pred eEEEEecCccccC
Q 016992 191 DIIISEWMGYFLL 203 (379)
Q Consensus 191 D~Iv~~~~~~~l~ 203 (379)
|+|+++++ |.+.
T Consensus 103 d~VvaNlP-Y~Is 114 (294)
T PTZ00338 103 DVCVANVP-YQIS 114 (294)
T ss_pred CEEEecCC-cccC
Confidence 99999864 5543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.8e-09 Score=91.61 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=77.6
Q ss_pred CEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecC
Q 016992 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (379)
..+||||||.|.+.+.+|+ .+...++|||+.. .+..|.+++...++ .|+.++++|+..+- ++++++|-|....+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999998 5678999999999 99999999999898 56999999998732 44589999997643
Q ss_pred ccccCChh-----hHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFEN-----MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~-----~~~~~l~~~~~~LkpgG~lip 227 (379)
+-..-... .-+.++..+.+.|+|||.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 32211000 126889999999999999873
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=102.69 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
+.+|||++||+|.+++.++. .++.+|+++|+++ +++.++++++.|++. +++++++|+..+....++||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 46899999999999999987 5667999999999 999999999999985 478999999775321367999999874
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+....+++...+.+++||.++.+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22345667656778999999865
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-10 Score=97.91 Aligned_cols=97 Identities=21% Similarity=0.167 Sum_probs=69.7
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccC
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (379)
.++|+|||+|..++.+|.. .++|+|+|+|+ |+++|++.....-.....++...++.++.-.++++|+|+|.-. +
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa---~- 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA---V- 110 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh---H-
Confidence 8999999999888888887 67999999999 9999987644322211233333344444333699999997432 1
Q ss_pred ChhhHHHHHHHHHhcccCCEEEE
Q 016992 204 FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|.-+++.+.+.+.|+||+.|-++
T Consensus 111 HWFdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 111 HWFDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred HhhchHHHHHHHHHHcCCCCCEE
Confidence 22467899999999999888444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-09 Score=95.86 Aligned_cols=85 Identities=24% Similarity=0.362 Sum_probs=69.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++.. . ++++++++|+.+++++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~--~ 91 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP--E 91 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--h
Confidence 3344444556788999999999999999999984 5999999999 99999988754 2 4699999999988764 5
Q ss_pred eeEEEEecCcccc
Q 016992 190 VDIIISEWMGYFL 202 (379)
Q Consensus 190 ~D~Iv~~~~~~~l 202 (379)
+|.|+++++ |..
T Consensus 92 ~d~Vv~NlP-y~i 103 (258)
T PRK14896 92 FNKVVSNLP-YQI 103 (258)
T ss_pred ceEEEEcCC-ccc
Confidence 899999865 544
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=91.21 Aligned_cols=107 Identities=24% Similarity=0.174 Sum_probs=80.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-c------C----CCCcEEEEEcceeeccC
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 185 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-~------~----~~~~i~~~~~d~~~~~~ 185 (379)
....++.+||+.|||.|.-...+|+.|. +|+|+|+|+ +++.+.+.... . + -.++|+++++|+.+++.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999987 999999999 98887432211 0 0 12468999999998875
Q ss_pred CC-CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. ++||+|+=... .+.....+.....+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~-l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTF-LCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSS-TTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecc-cccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 42 57999997643 344456788899999999999999954
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-09 Score=90.06 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-eccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~Iv~~~~~ 199 (379)
...-|||||||+|..+..+...| ...+|+|+|+ |++.|.+.--+ -.++.+|+- .+++..+.||-+|+-...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 46789999999999999998888 4999999999 99999863221 135666764 467878999999984222
Q ss_pred cccCCh--------hhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFE--------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~--------~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.|. .-+..++..++..|++|+..+.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 223221 1245677788999999999883
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-09 Score=97.08 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=67.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.+.+.....++.+|||+|||+|.++..+++.+. +|+|+|+++ |++.+++++.. .+++++++|+.++++++..+|
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcc
Confidence 344445567888999999999999999999865 999999999 99999887642 469999999999876522258
Q ss_pred EEEEecCcccc
Q 016992 192 IIISEWMGYFL 202 (379)
Q Consensus 192 ~Iv~~~~~~~l 202 (379)
.||++++ |..
T Consensus 108 ~vv~NlP-Y~i 117 (272)
T PRK00274 108 KVVANLP-YNI 117 (272)
T ss_pred eEEEeCC-ccc
Confidence 9999864 544
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=97.72 Aligned_cols=108 Identities=16% Similarity=0.074 Sum_probs=77.8
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+.+...+.+..... +.+|||+|||+|.+++.+++. +++|+|||+++ +++.|++++..+++. +++++++|+.++...
T Consensus 184 ~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHH
Confidence 34444444433322 347999999999999999886 46999999999 999999999999985 599999999774211
Q ss_pred ----------------CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 ----------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ----------------~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...||+|+.+++-.+ ....+++.+.+ |+++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G-----~~~~~l~~l~~---~~~ivY 308 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRAG-----LDPDTCKLVQA---YERILY 308 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCCC-----CcHHHHHHHHc---CCcEEE
Confidence 023799999987433 33455555543 666555
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=97.92 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (379)
++.+.+.+...... .+.+|||++||+|.+++.+++. +++|+|||.++ +++.|++++..+++. +++++++|+.++.
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 44455545443322 2357999999999999988886 56999999999 999999999999984 7999999997742
Q ss_pred -CC--------------CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 -LP--------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 -~~--------------~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+. ..+||+|+.+++-. +....++..+.+ |+++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivy 317 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILY 317 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEE
Confidence 10 12589999998743 333455555543 555554
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-09 Score=84.57 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=72.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
|.......+|++++|+|||+|.+++..+-.+...|+|+|+++ +++++.+|+....+. +.++++|+.++.+..+.||.
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fDt 117 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFDT 117 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeEee
Confidence 444455678999999999999999777777888999999999 999999999998874 79999999998887789999
Q ss_pred EEEecC
Q 016992 193 IISEWM 198 (379)
Q Consensus 193 Iv~~~~ 198 (379)
++.++.
T Consensus 118 aviNpp 123 (185)
T KOG3420|consen 118 AVINPP 123 (185)
T ss_pred EEecCC
Confidence 999864
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=95.80 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..+|.+|||+-||-|.+++.+|+.|...|+|+|+++ .++.++++++.|++.+.|..+++|+.++....+.+|-|++..+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 356999999999999999999999887799999999 9999999999999998899999999998755578999996543
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....++....+.+++||++.+
T Consensus 266 -------~~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 -------KSAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred -------CcchhhHHHHHHHhhcCcEEEE
Confidence 2334566666788888998873
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-09 Score=88.79 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=63.0
Q ss_pred EEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEE
Q 016992 149 YAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
+|+|+|+ |++.|+++....+ ...+|+++++|+.++++++++||+|++. +++.+..+...+++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999 9999987765322 2246999999999999888899999974 44555578899999999999999999
Q ss_pred Ee
Q 016992 226 LP 227 (379)
Q Consensus 226 ip 227 (379)
+.
T Consensus 78 ~i 79 (160)
T PLN02232 78 SI 79 (160)
T ss_pred EE
Confidence 74
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=97.20 Aligned_cols=115 Identities=25% Similarity=0.209 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (379)
...++.+...........++.+|||+=||.|.+++.+|+. ..+|+|+|+++ +++.|+++++.|++.+ ++|+.+++++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~ 352 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHH
Confidence 4456666666766677778899999999999999999976 56999999999 9999999999999965 9999999998
Q ss_pred ccCC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 183 IELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 183 ~~~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... ...+|.|+.+++-.++ -+.+++.+.+ ++|..+++
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvY 393 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVY 393 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEE
Confidence 8644 2578999999876655 2455666654 46666555
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=95.29 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=94.8
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCce
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (379)
.+.+++|.+|||+++.+|+.+.++|.. +.+.|+|.|.+. .+...+.++.+.|+.+ ..+...|..+++ ++ ++|
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFP-GSF 313 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccC-ccc
Confidence 366789999999999999999999983 567999999999 9999999999999954 667777887664 44 489
Q ss_pred eEEEEecCccc--cCChh-----------------hHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYF--LLFEN-----------------MLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~--l~~~~-----------------~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|-|+.+.+|++ +.... ...++|.....++++||+|++++|++..
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 99999988887 32211 1246777778999999999999998754
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=90.95 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=63.3
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHH-HHHHHHHcCCCCcE-EEEEcceeecc--
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVI-TVLKGKIEEIE-- 184 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i-~~~~~d~~~~~-- 184 (379)
+..++.......++++|||+|||||.++..+++.|+++|+|||+++ |+.. .++. .++ .+...|+..+.
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHh
Confidence 3334443333468889999999999999999999999999999999 7765 2221 122 23333444322
Q ss_pred ---CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+...+|++++. +..++..+.+.|+| |.++
T Consensus 136 ~~~~d~~~~DvsfiS-----------~~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 136 DIFPDFATFDVSFIS-----------LISILPELDLLLNP-NDLT 168 (228)
T ss_pred HcCCCceeeeEEEee-----------hHhHHHHHHHHhCc-CeEE
Confidence 111345555532 23357778888999 7766
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=88.83 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=82.2
Q ss_pred CEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecC
Q 016992 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (379)
..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++. |+.+++.|+..+. +++++.|-|....+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999999998 5678999999999 999999999999985 7999999998764 34458999987543
Q ss_pred cccc--CChh---hHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFL--LFEN---MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l--~~~~---~~~~~l~~~~~~LkpgG~lip 227 (379)
+-.. .|.. .-+.+++.+.+.|+|||.|.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 2211 1111 126889999999999999974
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.7e-08 Score=77.71 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=72.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCch-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-C
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-V 187 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~-~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~ 187 (379)
.+.|..+....++.+|||||||+|. ++..+++.|. .|+|+|+++ .++.++++ .+.++.+|+.+..+. -
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHH
Confidence 3445554444567899999999996 8999998876 999999999 98888764 268899999876644 4
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+|+|.+--+ ...+...+-++.+.+.-.-.+.
T Consensus 76 ~~a~liysirp------p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 76 KNAKLIYSIRP------PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred hcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEE
Confidence 67999998422 1445555555556555444444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-08 Score=93.16 Aligned_cols=95 Identities=25% Similarity=0.230 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
-++.+.+.+.......++ .|||+-||.|.+++.+|+. +++|+|||.++ +++.|++++..|++ ++++|++++++++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchh
Confidence 355555656665665555 8999999999999999987 46999999999 99999999999999 46999998876542
Q ss_pred C----------------CCCceeEEEEecCccccC
Q 016992 185 L----------------PVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 185 ~----------------~~~~~D~Iv~~~~~~~l~ 203 (379)
. ....+|+|+.+|+-.++.
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 1 123689999999876653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=83.61 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=56.9
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCc-eeEEEEecCc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTK-VDIIISEWMG 199 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-~D~Iv~~~~~ 199 (379)
.+|+|+.||.|+.++.+|+. ..+|+|||+++ .++.|+.|++-.|+.++|.++++|+.++.. .... +|+|+++++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 37999999999999999998 45999999999 999999999999998999999999988642 2122 8999998753
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-07 Score=84.70 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=80.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
..+..........+|+|||+|+|.++..+++ .+..+++..|.-..++.+++ .++|+++.+|+. -++| . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-c
Confidence 3444455666778999999999999999998 57779999999558888877 378999999998 5566 4 9
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC--EEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD--GIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg--G~lip 227 (379)
|+++...+.+.. .......+|+++++.|+|| |+|+.
T Consensus 160 D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 160 DVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred cceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 999976553332 2455679999999999999 99883
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=86.84 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=65.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.+.....++.+|||+|||+|.++..+++.+. .|+++|+++ +++.+++++.. ..+++++++|+.+++++ .+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 3344445567889999999999999999999864 799999999 99999887643 25699999999988764 46
Q ss_pred e---EEEEecC
Q 016992 191 D---IIISEWM 198 (379)
Q Consensus 191 D---~Iv~~~~ 198 (379)
| +|++++.
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 6 8888754
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.6e-08 Score=86.82 Aligned_cols=87 Identities=31% Similarity=0.366 Sum_probs=75.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.....|.......++..||++|.|||.++..+.+.|. +|+|+|+++ |+....++++....+++.+++++|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4455577778889999999999999999999999854 999999999 9999999998777778999999999988764
Q ss_pred CceeEEEEecC
Q 016992 188 TKVDIIISEWM 198 (379)
Q Consensus 188 ~~~D~Iv~~~~ 198 (379)
.||++|++.+
T Consensus 123 -~fd~cVsNlP 132 (315)
T KOG0820|consen 123 -RFDGCVSNLP 132 (315)
T ss_pred -ccceeeccCC
Confidence 7999999853
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=88.82 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC------C----------------------------------
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA------A---------------------------------- 146 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~------~---------------------------------- 146 (379)
.+.+..+|.......++..++|--||+|.+.+.+|..+. .
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 456667777778888888999999999999999988642 0
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCC--hhhHH----HHHHHHHhcc
Q 016992 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF--ENMLN----TVLYARDKWL 219 (379)
Q Consensus 147 ~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~--~~~~~----~~l~~~~~~L 219 (379)
.++|+|+++ +++.|+.|+...|+.+.|+|.++|+..+..+.+.+|+|||+++ |+..- +..+. .+.+.+.+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 378999999 9999999999999999999999999998765578999999974 66532 22233 3344455666
Q ss_pred cCCEEEEec
Q 016992 220 VDDGIVLPD 228 (379)
Q Consensus 220 kpgG~lip~ 228 (379)
+--+..++.
T Consensus 335 ~~ws~~v~t 343 (381)
T COG0116 335 AGWSRYVFT 343 (381)
T ss_pred cCCceEEEE
Confidence 655666643
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-08 Score=91.62 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeecc-CCCCceeEEEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (379)
..++||.||+|.|.++..+.+. +..+|+.||+++ +++.|++.+..++ + ..+++++.+|+...- ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999988885 567999999999 9999999876432 2 367999999998753 22478999999
Q ss_pred ecCccccCChh---hHHHHHH-HHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFEN---MLNTVLY-ARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~---~~~~~l~-~~~~~LkpgG~lip~ 228 (379)
+.....-.... .-..+++ .+.+.|+|||+++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 85321100000 1235666 788999999998843
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.5e-08 Score=84.26 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=82.0
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc-eeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~D~Iv~~~~~ 199 (379)
+.+++|||+|.|.-++.+|- .+..+|+-+|... .+...++.....+++ +++++++.++++... .. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999999885 4556799999999 999999999999994 699999999998643 23 999999876
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+..+..-+..++|+||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 456788888899999999876
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=86.84 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
...++||+|||.|..+..+.-.-+.+|-.||..+ +++.|++.+... .....++.+.-++++..+..+||+|.+.|+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 3468999999999999876553368999999999 999999766542 12446888888888876567999999999755
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|. ..++-.+|..+...|+|+|.|+.
T Consensus 134 hLT-D~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 134 HLT-DEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHhCcCCcEEEE
Confidence 554 46777999999999999999883
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-08 Score=92.34 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecC
Q 016992 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (379)
+.+|||+.||+|..++.++.. |+.+|+++|+++ +++.+++|++.|++. +++++++|+..+... ..+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 458999999999999999985 778999999999 999999999999885 589999999876321 257999998873
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+....+++.+.+.+++||.+...
T Consensus 124 -------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -------CCcHHHHHHHHHhcccCCEEEEE
Confidence 22346778888889999998754
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=84.94 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=72.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC-
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 188 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 188 (379)
.+.|.......++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.... .++++++++|+...+++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhhc
Confidence 44566666777889999999999999999999855 899999999 99999888752 2679999999999988722
Q ss_pred ceeEEEEecCccccC
Q 016992 189 KVDIIISEWMGYFLL 203 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~ 203 (379)
.++.||++.+ |.+.
T Consensus 95 ~~~~vVaNlP-Y~Is 108 (259)
T COG0030 95 QPYKVVANLP-YNIS 108 (259)
T ss_pred CCCEEEEcCC-Cccc
Confidence 7899999964 6553
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.1e-08 Score=81.86 Aligned_cols=106 Identities=23% Similarity=0.342 Sum_probs=82.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
..+.|..+.....|++|||+|+|+|..++.+++.|++.|++.|+.+ ....++-|++.||.. |.+...|... ++.
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~~ 141 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CCc
Confidence 3455666677788999999999999999999999999999999999 999999999999974 8888888766 337
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (379)
.||+|+..-+ +.+...-.+++. +.+.|+..|.
T Consensus 142 ~~Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 142 AFDLLLAGDL---FYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred ceeEEEeece---ecCchHHHHHHH-HHHHHHhCCC
Confidence 8999996433 333345556666 4444554454
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=85.90 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=86.7
Q ss_pred CEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeeccCC-CCceeEEEEec
Q 016992 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIELP-VTKVDIIISEW 197 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (379)
++||-||-|.|..+..+.+. +..+++.||+++ +++.|++.+.... . ..+++++.+|..++--. .++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999996 468999999999 9999999987543 2 37899999998876432 24899999976
Q ss_pred CccccCChhh-HHHHHHHHHhcccCCEEEEecCCceEEE
Q 016992 198 MGYFLLFENM-LNTVLYARDKWLVDDGIVLPDKASLYLT 235 (379)
Q Consensus 198 ~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~~~~~~~ 235 (379)
....-..+.. -..+++.+.+.|+++|+++....+.+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 5431111111 2688899999999999999765555444
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-07 Score=81.31 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-C--CCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L--PVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~~D~I 193 (379)
...-+||||.||.|...+.+.. .+ ..+|...|.|+ .++..++.++..|+.+.++|.++|+.+.. + -....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4556999999999988777666 43 36999999999 99999999999999887799999997753 1 13567888
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+...+...+.....+...+..+...+.|||++|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 87655333333355677899999999999999954
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=83.07 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCc----hHHHHHHHc---CC---CEEEEEecHH-HHHHHHHHHH--------------Hc---------
Q 016992 122 KDKVVLDVGAGTG----ILSLFCAKA---GA---AHVYAVECSQ-MANMAKQIVE--------------AN--------- 167 (379)
Q Consensus 122 ~~~~VLDlGcG~G----~~~~~la~~---g~---~~v~~vD~s~-~~~~a~~~~~--------------~~--------- 167 (379)
+.-+|+.+||+|| .+++.+.+. .. -+|+|.|+|+ +++.|++-.- +.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 566666662 12 3899999999 9999876430 00
Q ss_pred ----CCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 168 ----GFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 168 ----~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.++|+|.+.|+.+...+.+.||+|+|..+.-++ .......+++.+.+.|+|||.|+.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 11256899999998833335899999997653333 446668999999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=82.54 Aligned_cols=103 Identities=30% Similarity=0.300 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
...++||||+|.|..+..++.. ..+|++.|.|. |....++ .|+ +++ +..++.-.+.+||+|.|-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~~~~~fDvIscLN--- 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQTDFKFDVISCLN--- 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhccCCceEEEeehh---
Confidence 4568999999999999999886 56999999999 8655543 443 333 2223332346899999843
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEee
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (379)
.|.....+..+|+.+++.|+|+|+++....-.|..-++
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE 197 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVE 197 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEE
Confidence 35555778899999999999999998543333333333
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=96.08 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCCchHHHHHHHcC-----------------------------------------
Q 016992 107 TKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG----------------------------------------- 144 (379)
Q Consensus 107 ~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~~~~~la~~g----------------------------------------- 144 (379)
.+.+..+|...... .++..++|.+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34555566655554 567899999999999999887620
Q ss_pred --CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEEEEecCccccCC--hhhHHHHHHHHHh
Q 016992 145 --AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK 217 (379)
Q Consensus 145 --~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~ 217 (379)
..+++|+|+++ +++.|++|+..+|+.+.|.+.++|+.+++.+ .+++|+|+++++ |+... ...+..+...+..
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHH
Confidence 12699999999 9999999999999988899999999988654 247999999974 54332 2344444444444
Q ss_pred ccc---CCEEEE
Q 016992 218 WLV---DDGIVL 226 (379)
Q Consensus 218 ~Lk---pgG~li 226 (379)
.|+ +|+.++
T Consensus 333 ~lk~~~~g~~~~ 344 (702)
T PRK11783 333 RLKQQFGGWNAA 344 (702)
T ss_pred HHHHhCCCCeEE
Confidence 443 776553
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=76.44 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=84.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--- 184 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 184 (379)
.+.+........|.-||++|.|||.++..+.+.|. ..++++|.|+ .+....+... .+.++.+|+.++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 34455556777889999999999999999998764 6899999999 8888877653 3679999998876
Q ss_pred --CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+..||.|+|..+ ....-....-++++.+...|.+||.++-
T Consensus 111 ~e~~gq~~D~viS~lP-ll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 111 GEHKGQFFDSVISGLP-LLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhcCCCeeeeEEeccc-cccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 33578999999643 1111123345788888899999999983
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=81.30 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CC--CEEEEEecHH-HHHHHHHHHHHcC--------C-CCcEEEEEcceeeccCC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GA--AHVYAVECSQ-MANMAKQIVEANG--------F-SNVITVLKGKIEEIELP 186 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~--~~v~~vD~s~-~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~~ 186 (379)
+.||.+.||+|+|+|.++.++++. |. ..++|||..+ .++.+++++...- + ..++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 689999999999999999999973 43 2449999999 9999999997643 1 14588999999988777
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+||.|.+.. ....+.+++...|+|||.++
T Consensus 160 ~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 78999999642 12344555667788888876
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-07 Score=80.73 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--------CCceeE
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------VTKVDI 192 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~D~ 192 (379)
+.+|||||||||.-+.++|+ .+.-...-.|.++ .....+..+...++++-..-+..|+..-+.+ .+.||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 33699999999999999988 5666788889999 8778888888888865555666777665322 358999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|..|.+. ........++....++|++||.|+
T Consensus 106 i~~~N~lHI-~p~~~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 106 IFCINMLHI-SPWSAVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred eeehhHHHh-cCHHHHHHHHHHHHHhCCCCCEEE
Confidence 999776554 344566889999999999999988
|
The function of this family is unknown. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-07 Score=75.46 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
...+||||||+|..+.++++. +...+.++|+++ +++...+.+..|+. ++..++.|...--.+ +++|+++.++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNPP- 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNPP- 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECCC-
Confidence 678999999999999999883 456889999999 99999999998886 388899888765444 89999998863
Q ss_pred cccCChh-------------------hHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFEN-------------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~-------------------~~~~~l~~~~~~LkpgG~li 226 (379)
|....+. ...+++..+..+|.|.|+++
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 4432211 14677788888999999987
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.7e-07 Score=83.22 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCC---CCcEEEEEcceeeccCC-CC-ceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIELP-VT-KVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~~-~~-~~D~I 193 (379)
.+.++||-||-|.|..+..+.+.+ ..+|++||+++ +++.|++.+..... ..+++++.+|+..+--. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999999864 67999999999 99999998876432 26899999999875322 24 89999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+.......... .-..+++.+.+.|+|||+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 9986542111111 126888999999999999983
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.1e-08 Score=85.09 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
.....|.|+|||-+-++. .. ...|+..|+.+ -+-.++.+|+.++|++++++|++|+-+
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CL--- 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCL--- 236 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeH---
Confidence 455689999999987755 22 34899999854 224678899999999999999999632
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.|.+ .++..++.++.|+|++||.+..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEE
Confidence 2332 5678999999999999998873
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.8e-07 Score=79.96 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=85.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VT 188 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~ 188 (379)
|...+...||.+||+-|+|+|.++..+++. +.++++..|... ..+.|.+-++..|+++++++.+.|++..-+. ..
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 455567899999999999999999999994 558999999999 9999999999999999999999999886554 47
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCE-EEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (379)
.+|.|+.+++ .+-..+-.++..||.+| +++
T Consensus 177 ~aDaVFLDlP--------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 177 KADAVFLDLP--------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccceEEEcCC--------ChhhhhhhhHHHhhhcCceEE
Confidence 8999997753 23344444556787766 444
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.4e-07 Score=78.55 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCce
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (379)
...++++||||.=||..++..|.. ..++|+++|+++ ..+++.+..+..|...+|+++++++.+.- .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 356789999999999888888874 347999999999 99999999999999999999999986631 235789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|+++.+.- ..........+.++||+||+|+.....++.
T Consensus 151 DfaFvDad------K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDAD------KDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEccc------hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 99996531 123346777888999999999977655554
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=85.76 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=76.8
Q ss_pred CCEEEEEcCCCc----hHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHH------------------H-----cC-
Q 016992 123 DKVVLDVGAGTG----ILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVE------------------A-----NG- 168 (379)
Q Consensus 123 ~~~VLDlGcG~G----~~~~~la~~-g----~~~v~~vD~s~-~~~~a~~~~~------------------~-----~~- 168 (379)
.-+|+..||+|| .+++.+.+. + .-+|+|+|+|. +++.|++-.- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 566666663 2 24799999999 9999987631 0 01
Q ss_pred ------CCCcEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 169 ------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+...|+|.+.|+.+.+++ .+.||+|+|..+..++ .......++..+.+.|+|||+|+..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 235678888888775432 4789999996543322 3456789999999999999998843
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-07 Score=78.86 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=78.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcceeeccCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELP 186 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~ 186 (379)
.+..++....-..+|++|||+|+.||+++..+.+.|+++|+|||..- .+.+--++ ..+ +.+...++..+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 45555666666789999999999999999999999999999999987 44442211 123 44455566655422
Q ss_pred --CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+..|+++++. +|+ .+..+|..+..+++|+|.++
T Consensus 140 ~~~~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 140 DFTEKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred HcccCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEE
Confidence 25789999985 333 46788899999999999887
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=77.82 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=66.3
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEcceeecc
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIE 184 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~ 184 (379)
.+...+.++.+.+|||||.|...+.+|. .+..+++|||+.+ ..+.|+.... ..|. ..++++.++|+.+.+
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 3345577899999999999999888776 6788899999999 8877765443 2333 256888999886643
Q ss_pred CC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. -...|+|+++..+ +. +.+...|......||+|.++|
T Consensus 115 ~~~~~~s~AdvVf~Nn~~---F~-~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTC---FD-PDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHGHC-SEEEE--TT---T--HHHHHHHHHHHTTS-TT-EEE
T ss_pred hHhhhhcCCCEEEEeccc---cC-HHHHHHHHHHHhcCCCCCEEE
Confidence 21 1457999987642 22 455555677778899999887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-07 Score=80.12 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=57.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
.+.++|. ...++..|.|+|||.+.++..+. . ...|+..|+.+ .+ + .++.+|+..+|++++
T Consensus 62 ~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva----------~n---~--~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 62 VIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVA----------PN---P--RVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHC---TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--TT
T ss_pred HHHHHHH---hcCCCEEEEECCCchHHHHHhcc-c-CceEEEeeccC----------CC---C--CEEEecCccCcCCCC
Confidence 4444444 23456799999999998885543 2 23799999854 11 2 367789999999999
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++|++|+-+ .|.+ .++..++.+..|+|||||.+.
T Consensus 122 svDv~VfcL---SLMG-Tn~~~fi~EA~RvLK~~G~L~ 155 (219)
T PF05148_consen 122 SVDVAVFCL---SLMG-TNWPDFIREANRVLKPGGILK 155 (219)
T ss_dssp -EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEEEh---hhhC-CCcHHHHHHHHheeccCcEEE
Confidence 999999643 2333 567899999999999999987
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.9e-07 Score=89.39 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
.+..+||||||.|.+...+|+ .+...++|+|++. .+..+.+.+...++ .|+.+++.|+..+. ++++++|.|+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 467999999999999999998 4667999999999 88888778888888 46899998876443 5568899999765
Q ss_pred Ccccc--CChh---hHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFL--LFEN---MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l--~~~~---~~~~~l~~~~~~LkpgG~lip 227 (379)
++-.. .|.. .-+.++..+.++|||||.+..
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 43321 1111 126889999999999999873
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.4e-07 Score=86.15 Aligned_cols=123 Identities=22% Similarity=0.161 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee
Q 016992 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (379)
+....+.+...|.+......++.+||++||||.+++.+|+. +++|+|||+++ .++.|+++++.||++ +.+|+++-++
T Consensus 364 Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE 441 (534)
T KOG2187|consen 364 NTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAE 441 (534)
T ss_pred CcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecchh
Confidence 34445667777888888889999999999999999999885 77999999999 999999999999995 5999999777
Q ss_pred eccCC--C---Ccee-EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 182 EIELP--V---TKVD-IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 182 ~~~~~--~---~~~D-~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
++-.. . .+-+ ++|.++.-.++ -..++..++..-++- ++++.+|..+
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR~Gl-----h~~~ik~l~~~~~~~-rlvyvSCn~~ 493 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPRKGL-----HMKVIKALRAYKNPR-RLVYVSCNPH 493 (534)
T ss_pred hccchhcccCCCCCceEEEECCCcccc-----cHHHHHHHHhccCcc-ceEEEEcCHH
Confidence 75311 1 2335 66667654333 234555554433233 3444444444
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=81.11 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..+|.++|||||++|+++..+.+.|+ +|+|||..+|..... .. .+|+.+..|......+.+.+|+++|+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~----~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLM----DT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhh----CC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999999988 999999777433321 11 5688988888776543578999999975
Q ss_pred cccCChhhHHHHHHHHHhcccCC
Q 016992 200 YFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
..+..+..-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 34567777778888766
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-07 Score=82.28 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
...++|||||-|.+..++...|..+++-+|.|. |++.++.. +.+++ .+....+|-+.+++.+.++|+|++.+-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 457999999999999999888888999999999 99998763 33444 367778898999998999999998743
Q ss_pred cCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++...+++..+..+...|||+|.|+-
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchh
Confidence 44446788888889999999999983
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=80.04 Aligned_cols=102 Identities=20% Similarity=0.069 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...++||-||.|.|+.+..+.+.+. +|+-||+++ +++.+++.+... ++ +.+++++.. +.+ ...++||+||++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 4558999999999999999999864 999999999 999999966542 12 256777752 211 123789999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
.. ..+.+.+.+.+.|+|||.++.+..+.+.
T Consensus 147 s~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 147 QE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 42 1256778899999999999977666554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-06 Score=77.55 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH----c-----------------------------
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----N----------------------------- 167 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~----~----------------------------- 167 (379)
...+||--|||.|.++..+|+.|. .+.|.|.|- |+-..+-.+.. +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 456999999999999999999988 999999999 87665544321 0
Q ss_pred ------CCCCcEEEEEcceeeccCCC---CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 168 ------GFSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 168 ------~~~~~i~~~~~d~~~~~~~~---~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
....++....||+.++-.+. ++||+|++ ++|+.....+-..++.+.++|||||..|
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT---~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVT---CFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEE---EEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 11245777778887775444 68999995 4677777778899999999999999776
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=76.16 Aligned_cols=98 Identities=26% Similarity=0.262 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CCC
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (379)
.-+.++.+|+||||.+|.++..+++. +. ..|+|||+.+|- .+ .+|.++++|++.-+ +..
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~-~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PI-PGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cC-CCceEEeeeccCccHHHHHHHHcCC
Confidence 34567899999999999999999994 43 359999998721 12 33899999998754 234
Q ss_pred CceeEEEEecCccccC--------ChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLL--------FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+|+|+|++....-. .......++.-...+|+|||.++
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 5579999986531111 11112345555678999999988
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=81.84 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=65.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCC-
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV- 187 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~- 187 (379)
+.......++..+||++||.|..+..+++.. ..+|+|+|.++ +++.|++.+.. .++++++++|+.++. ++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 3444556788899999999999999999953 47999999999 99999988765 368999999998764 221
Q ss_pred -CceeEEEEec
Q 016992 188 -TKVDIIISEW 197 (379)
Q Consensus 188 -~~~D~Iv~~~ 197 (379)
.++|.|++++
T Consensus 88 ~~~vDgIl~DL 98 (296)
T PRK00050 88 LGKVDGILLDL 98 (296)
T ss_pred CCccCEEEECC
Confidence 2799999874
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.4e-07 Score=85.32 Aligned_cols=204 Identities=14% Similarity=0.057 Sum_probs=134.6
Q ss_pred CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc-ccCChhhH--HHHHHHHHhccc
Q 016992 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY-FLLFENML--NTVLYARDKWLV 220 (379)
Q Consensus 145 ~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~-~l~~~~~~--~~~l~~~~~~Lk 220 (379)
..+++-.+.++ .-.+..+++-...+. +++.+..= +..+ .+.|++.++++-. .+.-...+ -.....+...+-
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Kls-n~e~vp~i---~t~~-ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G 463 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLS-NNESVPAI---MTSP-DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHG 463 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhh---hcCC-CCCceeecchhhhhccCchhheeeeeeHHHHHHhcC
Confidence 45677778887 656666666555553 24433321 1233 3558887765310 00000011 012334456788
Q ss_pred CCEEEEecCCceEEEEeecccccccccccccccccccchhhhhhh-----------ccCceEEeeCCCcccCCCeeeEee
Q 016992 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQA-----------MMEPLVDTVDQNQIVTNCQLLKTM 289 (379)
Q Consensus 221 pgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~~ls~p~~l~~~ 289 (379)
|+-++.|+.+.+.+.+.+++.++...... ..+.|||++-+.++. -++|+|+| +..++++|..++.|
T Consensus 464 ~~~~V~P~~~~L~Ai~~kF~DL~~I~S~~-G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F 540 (636)
T KOG1501|consen 464 DELRVEPHMGVLKAIPEKFEDLQNIASDV-GTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKGDAVEILRF 540 (636)
T ss_pred CceeeccccchhhhhhHHHHHHHhhcccc-cccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecCCceeEEEe
Confidence 99999999999999999998888766543 678999999887765 35799999 99999999999999
Q ss_pred eCCCCCCCC-ceEe----------------cCCcEEEecCCCC--------CCCCeeeEEEEcCCceecCCCCEEEEEEE
Q 016992 290 DISKMGPGD-ASFT----------------CHKLMGFSTGPKS--------RATHWKQTVLYLEDVLTICEGEAISGSLT 344 (379)
Q Consensus 290 df~~~~~~~-~~f~----------------~~~~~~lst~P~~--------~~~~W~q~~~~l~~p~~v~~g~~i~~~~~ 344 (379)
+|......+ .... .-+++.||||... +..|.||+||++..- +....++.+.+-
T Consensus 541 ~~~~~V~~Qk~~V~i~~~~sS~A~~mWME~~~~~~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t~--L~~~ksl~~~~~ 618 (636)
T KOG1501|consen 541 PIDGRVSSQKCVVNIDNMSSSNAIPMWMEWEFGGINLSTGLLSISSAGVPEWNKGYKQGVYFPITA--LRNDKSLCLHAL 618 (636)
T ss_pred ccCCccccceeEEEccCCCccccceeeEEeeeCceeecccceeecCCCCcccCccccceeEEEhHH--hCCCceEEEEEE
Confidence 998644332 1111 2258899997642 236889999998543 344458888888
Q ss_pred EeeCCCCCceEEEEEEEEE
Q 016992 345 VAPNKKNPRDVDIMLKYSL 363 (379)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (379)
++...++|.++|.-
T Consensus 619 -----F~~~TGDI~~qF~~ 632 (636)
T KOG1501|consen 619 -----FDKSTGDINFQFGK 632 (636)
T ss_pred -----EcCCCCceEEEecc
Confidence 55566889888853
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-06 Score=80.60 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=74.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEE 182 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--------g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~ 182 (379)
.+.......++.+|+|.+||+|.+...+.+. ....++|+|+++ ++..|+-++.-.+... ...+..+|...
T Consensus 37 l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~ 116 (311)
T PF02384_consen 37 LMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLE 116 (311)
T ss_dssp HHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTT
T ss_pred HHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccc
Confidence 3444445677889999999999998887762 456999999999 9999988876665432 24578888755
Q ss_pred ccCC--CCceeEEEEecCccccC--Chh-----------------hHHHHHHHHHhcccCCEEEE
Q 016992 183 IELP--VTKVDIIISEWMGYFLL--FEN-----------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 183 ~~~~--~~~~D~Iv~~~~~~~l~--~~~-----------------~~~~~l~~~~~~LkpgG~li 226 (379)
.+.. ..+||+|+++++ ++.. ... .--.++..+.+.|++||++.
T Consensus 117 ~~~~~~~~~~D~ii~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 117 NDKFIKNQKFDVIIGNPP-FGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp SHSCTST--EEEEEEE---CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccccccccccCCCC-ccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 4432 378999999975 3332 100 11246777889999999865
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.4e-07 Score=77.87 Aligned_cols=94 Identities=27% Similarity=0.333 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CC--CCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP--VTK 189 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~--~~~ 189 (379)
++.+||||||++|+++..+.+.+ ..+|+|+|+.++ ... ..+.++++|+.+.. +. .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999976 579999999863 111 34777788876532 11 268
Q ss_pred eeEEEEecCccccCC--------hhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+|+........ .......+..+..+|+|||.++
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 999999862221111 0112234445567899999877
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.5e-06 Score=76.42 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=75.3
Q ss_pred CCEEEEEcCCCc----hHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH-----cC------------------
Q 016992 123 DKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA-----NG------------------ 168 (379)
Q Consensus 123 ~~~VLDlGcG~G----~~~~~la~~g------~~~v~~vD~s~-~~~~a~~~~~~-----~~------------------ 168 (379)
.-+|+-+||+|| .+++.+.+.+ .-+|+|.|++. +++.|++-+-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 569999999999 6677777743 25899999999 99998754311 11
Q ss_pred -----CCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 169 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 169 -----~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+...|.|.+.|+..-....+.||+|+|..+.-++ .......++..++..|+|||.|+.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1244677777776655223789999996553333 345667999999999999999983
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.5e-07 Score=86.24 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhccCC--CCC--CEEEEEcCCCchHHHHHHHcCCCEEEEE---ecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 016992 106 RTKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAV---ECSQ-MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 106 r~~~~~~~i~~~~~~--~~~--~~VLDlGcG~G~~~~~la~~g~~~v~~v---D~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
....|.+.|.+.+.. ..| .++||+|||+|.++..+...+. .+..+ |..+ .+..|- +.|++.-+.+
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfal----eRGvpa~~~~-- 169 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFAL----ERGVPAMIGV-- 169 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhh----hcCcchhhhh--
Confidence 345666666665544 222 4799999999999999988865 22222 3333 444443 3355432221
Q ss_pred cceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
.-...+++++..||+|.|.-.. ......-..+|-++.|+|+|||+++.+...++
T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hccccccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 1245788899999999984211 11111123578889999999999997776666
|
; GO: 0008168 methyltransferase activity |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=76.30 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (379)
....|+|.-||.|+-++..|..+. .|++||+++ .+..|+.+++-.|++++|+|++||+.++- +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999999998888866 999999999 99999999999999999999999998753 333457788765
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
+...+ .+-+..-+..+...++|.|
T Consensus 173 ppwgg---p~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 173 PPWGG---PSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCC---cchhhhhhhhhhhhcchhH
Confidence 43222 2333333333445555554
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.2e-06 Score=76.07 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=67.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (379)
..+.|.......++..|||+|+|+|.++..+++.+ ++|+++|+++ +++..++.+.. ..+++++.+|+.++....
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHHh
Confidence 34445555556689999999999999999999987 7999999999 99999887652 267999999999887652
Q ss_pred --CceeEEEEecC
Q 016992 188 --TKVDIIISEWM 198 (379)
Q Consensus 188 --~~~D~Iv~~~~ 198 (379)
.....|+++.+
T Consensus 94 ~~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 LKNQPLLVVGNLP 106 (262)
T ss_dssp CSSSEEEEEEEET
T ss_pred hcCCceEEEEEec
Confidence 35678888753
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-05 Score=68.52 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=71.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (379)
..+.+|.+||-||+++|....+++. .| .+.|||||.|+ .....-..+++. .||-.+-.|+.... .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 4578899999999999999999999 45 67999999999 655444444443 56887888987532 1136899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.. ......-++.++..+||+||.++.
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEE
Confidence 9999852 224566777888899999999873
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=71.60 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHhccCCCCCC--EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc------C--CCCcEEEEEcceee
Q 016992 114 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN------G--FSNVITVLKGKIEE 182 (379)
Q Consensus 114 i~~~~~~~~~~--~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~------~--~~~~i~~~~~d~~~ 182 (379)
|.++..+.+|. +|||+-+|+|..++.++..|+ .|+++|.++ +....++++++. + +..+++++++|+.+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 44455566777 999999999999999999988 599999999 999999988874 2 22579999999877
Q ss_pred ccC-CCCceeEEEEecCc
Q 016992 183 IEL-PVTKVDIIISEWMG 199 (379)
Q Consensus 183 ~~~-~~~~~D~Iv~~~~~ 199 (379)
+-- ....||+|+.++|.
T Consensus 157 ~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHhhCCCCCcEEEECCCC
Confidence 632 12479999999873
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-06 Score=79.79 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=91.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++..++|+|||-|.....++..+...++|+|.++ -+..+.......++.++..++.+|+...++++..||.+.+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 34567779999999999999999997667999999999 88888888877788777778889999999999999999963
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....|.+....++.++.++++|||.++.
T Consensus 186 ---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 186 ---EVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ---eecccCCcHHHHHHHHhcccCCCceEEe
Confidence 3355558889999999999999999884
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=69.56 Aligned_cols=96 Identities=26% Similarity=0.336 Sum_probs=69.3
Q ss_pred EEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccC
Q 016992 126 VLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (379)
|.||||--|.+++.+.+.|. .+++++|+++ -++.|++++...|+.++|+++.+|-.+.-.+.+.+|.|+...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999764 6899999999 999999999999999999999999655423323488888766643
Q ss_pred ChhhHHHHHHHHHhcccCCEEEE
Q 016992 204 FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+..+|.+....++....||
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE
T ss_pred --HHHHHHHHhhHHHhccCCeEE
Confidence 345677777766666555565
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.3e-06 Score=67.47 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=45.1
Q ss_pred EEEcCCCchHHHHHHHc----CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEecCcc
Q 016992 127 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 200 (379)
Q Consensus 127 LDlGcG~G~~~~~la~~----g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~ 200 (379)
||+|+..|..+..+++. +..+++++|..+..+.+++.+++.++.+++++++++..+.- ++.+++|+|+.+..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888887763 22389999998754456666666777788999999987642 22478999998752
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+........+..+.+.|+|||+++...
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 112445667788889999999998653
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=65.81 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-----cCCCEEEEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcceeeccCCCCcee
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-----~g~~~v~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
..+...|+|+|||.|.++..++. ....+|++||.++ .++.+.++.+..+ +..++.+..++..+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 35678999999999999999998 4456999999999 9999999998877 54567777776655433 25667
Q ss_pred EEEE
Q 016992 192 IIIS 195 (379)
Q Consensus 192 ~Iv~ 195 (379)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 7775
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.8e-05 Score=66.64 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
.+|.+||.+|-|.|+....+.+++..+-+.||.++ .++..+...-.. ..+|.++.+-.++.. ++++.||-|+-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence 78899999999999999999888776778899999 888776543221 256888888777653 5578899999765
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. -.+-+++..+.+.+.++|||+|++-+
T Consensus 178 y---~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 Y---SELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred h---hhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 3 23336778888899999999999864
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.01 E-value=4e-05 Score=71.03 Aligned_cols=89 Identities=24% Similarity=0.219 Sum_probs=54.7
Q ss_pred HHHHHHHhccCCC-----CCCEEEEEcCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcc
Q 016992 109 SYQNVIYQNKFLF-----KDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGK 179 (379)
Q Consensus 109 ~~~~~i~~~~~~~-----~~~~VLDlGcG~G-~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d 179 (379)
.|..+|...+... ...++||||||.. +..+..++ .| .+++|.|+++ .++.|++++..| ++.++|+++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 4555555433322 2458999999986 55666666 45 5999999999 999999999999 999999998764
Q ss_pred eeecc-----CCCCceeEEEEecC
Q 016992 180 IEEIE-----LPVTKVDIIISEWM 198 (379)
Q Consensus 180 ~~~~~-----~~~~~~D~Iv~~~~ 198 (379)
-...- .+.+.||+.+|+++
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE---
T ss_pred CccccchhhhcccceeeEEecCCc
Confidence 32211 22478999999985
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=60.98 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=67.4
Q ss_pred EEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee--ccCCC-CceeEEEEecCc
Q 016992 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 199 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~Iv~~~~~ 199 (379)
++|+|||+|... .++.... ..++++|.++ ++..++......+. ..+.+...+... +++.. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999877 4444322 3899999999 88885554433211 116788888776 66664 379999433221
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+ . .. ....+..+.+.|+|+|.++...
T Consensus 130 ~-~--~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 130 H-L--LP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred h-c--CC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 1 1 12 6788999999999999988543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.9e-05 Score=64.49 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=49.6
Q ss_pred EEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee
Q 016992 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (379)
+|||+|||.|.++..+++.+. .+|+++|+++ +.+.++++++.++++ ++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999999998654 4899999999 999999999999885 48888876654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=67.67 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
..+..........+|||+|||+|.-+..+.. . ...+++++|.|+ |++.++..+....-........ ....-..+..
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRR-VLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhh-hhhcccccCC
Confidence 3344444455678999999999976655555 2 356899999999 9999998876543211111111 1111011123
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccC
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (379)
..|+|++..+..-+.. .....+++.+...+.+
T Consensus 102 ~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 102 PDDLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred CCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 4499998655455554 5567778888777766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=77.42 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHcC---------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g---------~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~ 186 (379)
.+.+|||.|||+|.+...+++.. ...++|+|+++ ++..++.++...+. ..+.+.+.|...... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45689999999999998887631 14789999999 99999999877652 225566665433211 1
Q ss_pred CCceeEEEEecC
Q 016992 187 VTKVDIIISEWM 198 (379)
Q Consensus 187 ~~~~D~Iv~~~~ 198 (379)
.++||+||++|+
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999975
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.6e-05 Score=69.79 Aligned_cols=114 Identities=16% Similarity=-0.042 Sum_probs=82.1
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCC-----CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-------
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-----AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~-----~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (379)
+.+.+|.+|||+|+.+|..+..+.+... +.|++=|.+. -+...........- .++.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 5678999999999999999988877421 3899999999 88887777755443 34555555554433
Q ss_pred --CCCCceeEEEEecCccccCC---hhh-----------------HHHHHHHHHhcccCCEEEEecCCce
Q 016992 185 --LPVTKVDIIISEWMGYFLLF---ENM-----------------LNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~---~~~-----------------~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
.....||-|+++.+|++=.. ... --.++....++||+||.+|+++|++
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 12357999999977654210 000 1367777889999999999999986
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.5e-05 Score=69.69 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHH--HH-cC--C-CCcEEEEEcceeeccC-CCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV--EA-NG--F-SNVITVLKGKIEEIEL-PVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~--~~-~~--~-~~~i~~~~~d~~~~~~-~~~~~D 191 (379)
..-.+||-+|.|.|.-+..+.+.+ ..+|+-||+++ |++.++++. .. |+ + +.+++++..|+.++-- ....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 344689999999999999999986 78999999999 999998433 22 21 2 2679999999887642 246899
Q ss_pred EEEEecCccccCChhhH--HHHHHHHHhcccCCEEEEecCCceEEE
Q 016992 192 IIISEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPDKASLYLT 235 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~~~~~~~~ 235 (379)
+||.+..+.--...+.+ ..+...+.+.|+++|.++.+..+.|..
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t 413 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT 413 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC
Confidence 99988643222111111 355666788999999999776665553
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00029 Score=66.44 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeec
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEI 183 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-----g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~ 183 (379)
...|... +.++..++|+|||+|..+..+.+. ...++++||+|. +++.+.+.+....++. .|.-+++|..+.
T Consensus 67 ~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 67 SSDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 3445533 356779999999999886665542 135799999999 9999998888444432 234488887653
Q ss_pred ----cCC--CCceeEEEEecCccccCC--hhhHHHHHHHHHh-cccCCEEEEe
Q 016992 184 ----ELP--VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK-WLVDDGIVLP 227 (379)
Q Consensus 184 ----~~~--~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~-~LkpgG~lip 227 (379)
+.+ .....+++. +|+.+.+ ......+|+.+++ .|+|||.|+.
T Consensus 145 l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 111 133566665 4444433 2345688899999 9999999874
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1e-05 Score=73.31 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..|..++|+|||.|-... ..+...++|+|++. .+..+++. +......+|+..++....+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 458899999999984422 12345799999999 88888752 21257778999999988999999998787
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++........+++++.+.|+|||...
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 888777777899999999999999866
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00026 Score=65.01 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCc-hHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHH-HcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 123 DKVVLDVGAGTG-ILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 123 ~~~VLDlGcG~G-~~~~~la~-~g-~~~v~~vD~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
.++|+=||||+= ..++.+++ .+ ...|+++|+++ +++.+++.+. ..|+..+++|+++|..+...+...||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 359999999975 55566665 34 35899999999 9999999888 66778889999999987765557899998643
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ .-........++..+.+.++||+.++.
T Consensus 201 l--Vg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 201 L--VGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred h--cccccchHHHHHHHHHhhCCCCcEEEE
Confidence 2 111123567999999999999999883
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=61.17 Aligned_cols=101 Identities=23% Similarity=0.237 Sum_probs=74.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 192 (379)
..+.+|.+||=||+.+|....+++. .|.+.|||||.|+ +....-..+.+. .||-.+.+|+.... .--+.+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence 5578999999999999999999999 5778999999998 544333333332 45777888887542 11367999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+.+.. -.....-+..+...+||+||.++
T Consensus 149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred EEEecC-----CchHHHHHHHHHHHhcccCCeEE
Confidence 998742 12445667788899999999766
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=57.69 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...+++|+|||++.|..++.++-.|++.|+++|.++ +.+..+++++.+.+-++..-. . +++-.-+.||+.+.+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWNGEYEDVDIFVMDC 100 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cccccCCCcceEEEEc
Confidence 367899999999999999999999999999999999 999999998877543322211 1 2222347789988653
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=70.41 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=80.3
Q ss_pred CCC-EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~-~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
+-. ++|-+|||.-.++..+-+.|...|+.+|.|+ .++.+...... .- .-+.+...|+..+.+++++||+|+.....
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~-~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ER-PEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CC-cceEEEEecchhccCCCcceeEEEecCcc
Confidence 344 9999999999999999999999999999999 87777654431 11 33899999999999999999999986543
Q ss_pred cccC-Chh------hHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLL-FEN------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~-~~~------~~~~~l~~~~~~LkpgG~li 226 (379)
..+. .+. .....+.++.++|++||+++
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 3332 222 23466788999999999976
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=59.02 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+..+.+|+|+|.|.+.+.+++.|...-+|+|+++ .+.+++-..-+.|+.....|...|+-..++.+-.+-+|+-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg---- 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG---- 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee----
Confidence 45458999999999999999998877889999999 9999999998999988899999999888876444333332
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+..++.+-..+..-|..|..++
T Consensus 147 ----aes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 147 ----AESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred ----hHHHHhhhHHHHHhhCcCCCeEE
Confidence 12445555566666677777777
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00037 Score=59.27 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=63.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEc-ceeecc--------CCC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LPV 187 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~~ 187 (379)
-+.|+.+|||+||.+|.++..+.+. +.+.|.|||+-. + ... ..+.++++ |+.+.. ++.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~--~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------I--EPP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------c--cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 3568999999999999999988874 567999999854 1 111 23556666 665532 456
Q ss_pred CceeEEEEecCccccCChhhH---------HHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENML---------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~---------~~~l~~~~~~LkpgG~li 226 (379)
.++|+|++++... ..+..+. ..++.-....++|+|.++
T Consensus 135 r~VdvVlSDMapn-aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 135 RPVDVVLSDMAPN-ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CcccEEEeccCCC-CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 7899999985321 1111111 223333346788999988
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.7e-05 Score=67.21 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC---------------------------C
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------S 170 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~---------------------------~ 170 (379)
...+|.++||||||+-......|..-+.+|+..|..+ -.+..++.++..+- -
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456889999999996554444433357899999988 77766555532110 0
Q ss_pred CcE-EEEEcceeecc-CCC-----CceeEEEEecCccc-cCChhhHHHHHHHHHhcccCCEEEE
Q 016992 171 NVI-TVLKGKIEEIE-LPV-----TKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 171 ~~i-~~~~~d~~~~~-~~~-----~~~D~Iv~~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..| .++.+|+.+.+ +.. ++||+|++...... -.........++++.++|||||.|+
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 113 47778887643 211 35999998543221 1234556788999999999999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=57.90 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=57.6
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCceeEEEEecCccccCChhh-------HHHHHHHHH
Q 016992 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFLLFENM-------LNTVLYARD 216 (379)
Q Consensus 147 ~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~Iv~~~~~~~l~~~~~-------~~~~l~~~~ 216 (379)
+|+|.|+.+ +++..+++++..++.+++++++..-+.+.. +.+++|+++.++ ||...+... --..++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999 999999999999998899999988887752 324899999883 554332211 236677788
Q ss_pred hcccCCEEEE
Q 016992 217 KWLVDDGIVL 226 (379)
Q Consensus 217 ~~LkpgG~li 226 (379)
++|+|||.++
T Consensus 80 ~lL~~gG~i~ 89 (140)
T PF06962_consen 80 ELLKPGGIIT 89 (140)
T ss_dssp HHEEEEEEEE
T ss_pred HhhccCCEEE
Confidence 9999999987
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00096 Score=58.54 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+.++.||||--|.+...+.+. .+..++++|+++ -++.|.+++.++++.+++++..+|....-..+..+|+|+...||
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 4556999999999999999995 568999999999 99999999999999999999999985443334579999976664
Q ss_pred cccCChhhHHHHHHHHHhccc
Q 016992 200 YFLLFENMLNTVLYARDKWLV 220 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lk 220 (379)
- ..+..+|.+....|+
T Consensus 96 G-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 96 G-----TLIREILEEGKEKLK 111 (226)
T ss_pred H-----HHHHHHHHHhhhhhc
Confidence 3 345667776666665
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=66.74 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=73.2
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcccc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (379)
...+|+|.|.|.++..+... ..+|-+++... .+..++..+. .| |+.+-+|+..- .| +-|+|+.-|+.+.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP--KGDAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC--CcCeEEEEeecccC
Confidence 68999999999998888873 45789999987 6665555554 33 77888888766 43 55799998876555
Q ss_pred CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.. .+.-++|++++..|+|||.++.
T Consensus 250 tD-edcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 250 TD-EDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred Ch-HHHHHHHHHHHHhCCCCCEEEE
Confidence 43 5677999999999999999873
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=61.46 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=65.3
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEEecCcc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 200 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~~~~ 200 (379)
.++|||||=+..... +..+.-.|+.||+++ ..-.+.+.|+.+.++| .++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 599999987543322 233445799999976 2235678899888764 68999999998888
Q ss_pred ccCChhhHHHHHHHHHhcccCCEE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~ 224 (379)
++......-.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 887777778999999999999999
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00063 Score=63.54 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=66.2
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (379)
+...+...+|..++|.=+|.|+-+..+++. +.++|+|+|.++ ++..|++.+... .+++.+++++..++. ..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC
Confidence 334455678889999999999999999884 457999999999 999999988754 368999999988764 12
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
..++|.|+.++
T Consensus 90 ~~~vDgIl~DL 100 (305)
T TIGR00006 90 VTKIDGILVDL 100 (305)
T ss_pred CCcccEEEEec
Confidence 35799999774
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=5.4e-05 Score=62.73 Aligned_cols=110 Identities=22% Similarity=0.290 Sum_probs=75.0
Q ss_pred HHhccCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcceeecc--CC
Q 016992 114 IYQNKFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIE--LP 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~--~~ 186 (379)
+.+......|..||++|.| +|..++++|. .+...|...|-++ .++-.++....|..+ .++.++..+...-. ..
T Consensus 21 ~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~e 100 (201)
T KOG3201|consen 21 ILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQE 100 (201)
T ss_pred HHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHh
Confidence 4443444567899999999 5777888877 5678999999999 999988887776332 22222222221111 12
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...||+|+|.- +++..+.-..+.+.+.++|+|.|.-+
T Consensus 101 q~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 101 QHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred hCcccEEEecc---chhHHHHHHHHHHHHHHHhCccccee
Confidence 35899999842 33334566788899999999999854
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00062 Score=62.00 Aligned_cols=121 Identities=13% Similarity=0.088 Sum_probs=71.6
Q ss_pred HHHHHHHHHhccCCC-CCCEEEEEcCCC--chHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce
Q 016992 107 TKSYQNVIYQNKFLF-KDKVVLDVGAGT--GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~-~~~~VLDlGcG~--G~~~~~la~--~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (379)
+..|.....+.+... --...||||||- -...-.+|+ .+..+|+-||.++ .+..++..+..+.- ....++++|+
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~ 130 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--T
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCC
Confidence 444443333333333 235799999994 234455555 4667999999999 99999998876642 3489999999
Q ss_pred eecc-----------CC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 181 EEIE-----------LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 181 ~~~~-----------~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
.+.. +. +..+=+++.. +.+++..+.++..++..+...|.||.+++.+.
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPVavll~~-vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPVAVLLVA-VLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCHHHHhcCHHHHhcCCCCCCeeeeeee-eeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 7642 11 3555555554 34667776789999999999999999998543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00016 Score=67.02 Aligned_cols=84 Identities=24% Similarity=0.226 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHH-------HHHHHHHHcCCC-CcEEEEEcceeeccCC-C
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-------MAKQIVEANGFS-NVITVLKGKIEEIELP-V 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~-------~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~ 187 (379)
....+|+.|+|--.|||.+...+|..|+ .|+|.|++- ++. -.+.|+++.|.. .-+.++.+|...-++. .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4568999999999999999999999987 999999998 776 346777777743 3366777887776543 4
Q ss_pred CceeEEEEecCccccC
Q 016992 188 TKVDIIISEWMGYFLL 203 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~ 203 (379)
..||.|||+++ |++.
T Consensus 283 ~~fDaIvcDPP-YGVR 297 (421)
T KOG2671|consen 283 LKFDAIVCDPP-YGVR 297 (421)
T ss_pred ceeeEEEeCCC-cchh
Confidence 68999999974 7653
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00071 Score=65.44 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeeccC-CCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-~~~~~D~Iv~~ 196 (379)
.+.+|||.=+|+|.=++-.+.- +..+|++-|+|+ +++.+++|++.|++.+ ++++.+.|+..+-. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4468999999999988888774 668999999999 9999999999999987 79999999988642 34889999988
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++ +.+..+++...+.++.||.+..
T Consensus 129 Pf-------GSp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 129 PF-------GSPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp -S-------S--HHHHHHHHHHEEEEEEEEE
T ss_pred CC-------CCccHhHHHHHHHhhcCCEEEE
Confidence 76 3456788888899999999873
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00097 Score=61.29 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-----------------------------
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV----------------------------- 172 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~----------------------------- 172 (379)
..+||--|||.|.++..+|..|. .+-|=|.|- |+-...-.+..-..++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999987 667778888 76544333311111111
Q ss_pred ----------EEEEEcceeeccCC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 173 ----------ITVLKGKIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 173 ----------i~~~~~d~~~~~~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+-.||+.+.--. .+.||+|+. ++++.....+-..++.+...|||||+.|
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvT---cfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVT---CFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEE---EEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 11122333332111 246999995 4666666777889999999999999987
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0038 Score=55.80 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=61.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~I 193 (379)
.....|++||-+|-.- ..++.+|. ...++|+.+|+++ +++..++.+++.|++ |+.+..|+.+--.+ .++||++
T Consensus 40 ~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 40 RGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred cCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 3446889999999665 55566555 3457999999999 999999999999985 99999998764221 4899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
+++++ +-+ .-+.-++......||..|
T Consensus 117 ~TDPP-yT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 117 FTDPP-YTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EE----SSH---HHHHHHHHHHHHTB-STT
T ss_pred EeCCC-CCH---HHHHHHHHHHHHHhCCCC
Confidence 99985 444 456677777777887665
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00069 Score=60.60 Aligned_cols=85 Identities=24% Similarity=0.208 Sum_probs=52.4
Q ss_pred HHhccCCCCCC--EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH---HcCC-----CCcEEEEEcceee
Q 016992 114 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE---ANGF-----SNVITVLKGKIEE 182 (379)
Q Consensus 114 i~~~~~~~~~~--~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~---~~~~-----~~~i~~~~~d~~~ 182 (379)
|.++..+.++. +|||.-+|-|.-++.+|..|. +|+++|.|+ +..+.+.-++ ...- ..+|+++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 44445455553 899999999999999998886 899999999 7665554332 2221 1479999999988
Q ss_pred cc-CCCCceeEEEEecCc
Q 016992 183 IE-LPVTKVDIIISEWMG 199 (379)
Q Consensus 183 ~~-~~~~~~D~Iv~~~~~ 199 (379)
+- .++.+||+|+.++|.
T Consensus 144 ~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp HCCCHSS--SEEEE--S-
T ss_pred HHhhcCCCCCEEEECCCC
Confidence 53 335899999999983
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=6e-05 Score=64.99 Aligned_cols=93 Identities=28% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..+.++||+|+|.|.++..++.. ..+|+|.|.|. |....++. +. .++. ..+..-.+-++|+|.|-.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~--~~ew~~t~~k~dli~clNl- 178 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLT--EIEWLQTDVKLDLILCLNL- 178 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceee--ehhhhhcCceeehHHHHHH-
Confidence 34579999999999999998875 45899999999 98877652 21 2211 1111112356999997322
Q ss_pred cccCChhhHHHHHHHHHhcccC-CEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVD-DGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkp-gG~lip 227 (379)
+...-++-++|+.++.+|.| +|.+|.
T Consensus 179 --LDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 179 --LDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred --HHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 33334567899999999999 888774
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00036 Score=61.24 Aligned_cols=92 Identities=22% Similarity=0.208 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHc--C------C--CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------C
Q 016992 124 KVVLDVGAGTGILSLFCAKA--G------A--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~--g------~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (379)
.+|+|+|+.+|.++..+++. . . +.|++||+.+|+. + ..|.-+++|++... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I-~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------I-EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------c-CceEEeecccCCHhHHHHHHHHh
Confidence 57999999999999999883 1 1 2399999977433 3 33777889987753 4
Q ss_pred CCCceeEEEEecCcc--ccCCh------hhHHHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGY--FLLFE------NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~--~l~~~------~~~~~~l~~~~~~LkpgG~li 226 (379)
..++.|+|||+.... +++.. ..+...|.-...+|||||.|+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 457999999975322 22211 112344555678999999998
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00013 Score=66.51 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCchHHH-HHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~-~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
-.+..|.|+-+|-|.+++ .+..+|++.|+|+|.++ .++..+++++.|++.++..++.+|-....+. ...|-|...++
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~AdrVnLGLl 271 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADRVNLGLL 271 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchheeeccc
Confidence 345799999999999999 77789999999999999 9999999999999888888888888776554 78899985443
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEE-EE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGI-VL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~-li 226 (379)
. ..++...... +.|||.|- ++
T Consensus 272 P---Sse~~W~~A~----k~Lk~eggsil 293 (351)
T KOG1227|consen 272 P---SSEQGWPTAI----KALKPEGGSIL 293 (351)
T ss_pred c---ccccchHHHH----HHhhhcCCcEE
Confidence 2 2334444433 55666554 44
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00094 Score=57.64 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC-------CCCcEEEEEcceeeccC---CCCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FSNVITVLKGKIEEIEL---PVTK 189 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~~---~~~~ 189 (379)
+.-.+.|||||-|.+.+.++. .+..-+.|.|+-. ..++.++++...+ + .++.+...++..... ..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhcc
Confidence 334699999999999999998 4667899999999 9999999888764 3 346677666554421 1111
Q ss_pred eeEEE-EecCccccCCh----hhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIII-SEWMGYFLLFE----NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv-~~~~~~~l~~~----~~~~~~l~~~~~~LkpgG~li 226 (379)
.+-.+ +-+-.++-... -.-..++.+..-+|++||.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 11111 11000100000 011467778888999999988
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0035 Score=54.98 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH----c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~----~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
....-.|.+.|-+. +++.|+++|.-.|+.+++.|. . +.++|+|||++- ..... .++...+..+|++++
T Consensus 18 P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~ 91 (206)
T PF04989_consen 18 PQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQ 91 (206)
T ss_dssp HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEE
T ss_pred HHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEE
Confidence 33344555555543 557999999999988887775 2 457999999964 22211 122234457899999
Q ss_pred cceeeccC--------CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 178 GKIEEIEL--------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 178 ~d~~~~~~--------~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|..+... ......+|+-+. .-.+ ......|.....++++|+++|..
T Consensus 92 Gds~d~~~~~~v~~~~~~~~~vlVilDs---~H~~-~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 92 GDSIDPEIVDQVRELASPPHPVLVILDS---SHTH-EHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp S-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred CCCCCHHHHHHHHHhhccCCceEEEECC---CccH-HHHHHHHHHhCccCCCCCEEEEE
Confidence 99876531 123445777543 1112 34456677789999999999844
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0038 Score=56.18 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+.+...+.. ...+..+|+|||||.=-++...... +...++|+|++. +++.....+...+.. .++...|...-+
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 4445555543 2345789999999998888876653 335999999999 999999999998875 556666766554
Q ss_pred CCCCceeEEEE
Q 016992 185 LPVTKVDIIIS 195 (379)
Q Consensus 185 ~~~~~~D~Iv~ 195 (379)
.+ ...|+.+.
T Consensus 168 ~~-~~~DlaLl 177 (251)
T PF07091_consen 168 PK-EPADLALL 177 (251)
T ss_dssp TT-SEESEEEE
T ss_pred CC-CCcchhhH
Confidence 43 77899985
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0027 Score=59.28 Aligned_cols=111 Identities=18% Similarity=0.096 Sum_probs=64.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeec--cCC-CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI--ELP-VT 188 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~ 188 (379)
+..........+|||+|.|+|.-...+-. .+ ...++.++.|+.+...-.-+..+-..........|+..- +++ ..
T Consensus 105 L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad 184 (484)
T COG5459 105 LQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAAD 184 (484)
T ss_pred HHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccc
Confidence 33334556667899999999876555544 23 367888999984443333344433222233333343322 222 24
Q ss_pred ceeEEEEecCccccC---ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLL---FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.|++++. ..-|. .+..+...++.+..++.|||.++.
T Consensus 185 ~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 185 LYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred eeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 5666664 22222 234455688889999999999873
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0019 Score=60.02 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=56.6
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEEEEecCccc
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYF 201 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~ 201 (379)
+|+|+.||.|.++..+.+.|...|.++|+++ +++..+.+... .++++|+.++... ...+|+++..++|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 6899999999999999889988899999999 88887776532 1567788777532 257999999887665
Q ss_pred c
Q 016992 202 L 202 (379)
Q Consensus 202 l 202 (379)
.
T Consensus 75 f 75 (275)
T cd00315 75 F 75 (275)
T ss_pred h
Confidence 4
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0026 Score=62.47 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCC--EEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
-..|+|..+|.|+++..+...+.- .|+-++-..-+.+. -..|+ |-+.+.-.+.++.-...||+|.++.+.+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vI----ydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVI----YDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhh----hhccc---chhccchhhccCCCCcchhheehhhhhh
Confidence 358999999999999998876531 22222211122222 22344 3344433344443348999999976655
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
...+.-.+..++-++.|.|+|||.+|..
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 5555556789999999999999999853
|
; GO: 0008168 methyltransferase activity |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.006 Score=56.63 Aligned_cols=95 Identities=26% Similarity=0.261 Sum_probs=65.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce--eec------cCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEI------ELP 186 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~------~~~ 186 (379)
....+|.+||-+|+|+ |.+++..|+ .|+++|+.+|+++ .++.|++ + |.. .+....... .++ .+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-VTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-EEeeccccccHHHHHHHHHhhcc
Confidence 4567899999999997 888999999 6999999999999 9999988 3 332 122221111 111 012
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...+|+.+. +++ ....++.....+++||.++
T Consensus 240 ~~~~d~~~d---CsG------~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 240 KKQPDVTFD---CSG------AEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred ccCCCeEEE---ccC------chHHHHHHHHHhccCCEEE
Confidence 345888884 222 2445566667889999976
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=55.99 Aligned_cols=91 Identities=27% Similarity=0.269 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-eeeccCCCCceeEE
Q 016992 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEIELPVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~D~I 193 (379)
....||++|+-+|+| .|.++..+|+ .| .+|+++|.++ ..+.|++.-. -.++... ......-.+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 456789999999998 2467778888 67 5999999999 9999887532 2333322 21111111349999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... . ...+....+.|++||.++
T Consensus 234 i~tv--------~--~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 234 IDTV--------G--PATLEPSLKALRRGGTLV 256 (339)
T ss_pred EECC--------C--hhhHHHHHHHHhcCCEEE
Confidence 8632 2 344556668899999988
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0064 Score=53.93 Aligned_cols=100 Identities=25% Similarity=0.284 Sum_probs=67.9
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-H----HHHHHHHHHHcCCCCcEEEEEcceeecc---CC
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-M----ANMAKQIVEANGFSNVITVLKGKIEEIE---LP 186 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~----~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~ 186 (379)
++.+.+|.+||=||+++|....+++.. | ..-|||||.|. . +..|+++ .||-.+..|+.... ..
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeee
Confidence 466789999999999999998888884 3 46899999986 4 3344332 33555555776432 11
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
-.-+|+|+++... ......+.-+...+||+||-++.+
T Consensus 224 VgmVDvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCCC-----chhhhhhhhhhhhhhccCCeEEEE
Confidence 2468999987531 122334444667899999998854
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0033 Score=60.56 Aligned_cols=94 Identities=31% Similarity=0.340 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-ee-ec-cCC-CCceeE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IE-EI-ELP-VTKVDI 192 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~-~~-~~~-~~~~D~ 192 (379)
..++.+|+-+|||+ |+++..+++ .|+.+|+++|.++ .++.|++.... +.+.....+ .. .. ... ...+|+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCE
Confidence 34555999999998 888888888 6999999999999 99999874322 111111111 10 00 111 236999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++- ..+ ....+....+.++|||.++
T Consensus 242 vie-~~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 242 VIE-AVG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred EEE-CCC--------CHHHHHHHHHHhcCCCEEE
Confidence 983 222 2346677778999999987
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.038 Score=48.41 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHH-----------------
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEA----------------- 166 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g--~~~v~~vD~s~-~~~~a~~~~~~----------------- 166 (379)
+.+.+++.. .....+-++.|-|||.|.+...+.- .+ ...|+|-|+++ +++.|++|+.-
T Consensus 38 Ei~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 38 EIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 344444432 2223445899999999988776665 22 36899999999 99999999821
Q ss_pred ------------------------cCCCCcEEEEEcceeec------cCCCCceeEEEEecCcccc--CC-----hhhHH
Q 016992 167 ------------------------NGFSNVITVLKGKIEEI------ELPVTKVDIIISEWMGYFL--LF-----ENMLN 209 (379)
Q Consensus 167 ------------------------~~~~~~i~~~~~d~~~~------~~~~~~~D~Iv~~~~~~~l--~~-----~~~~~ 209 (379)
.|-.....+.+.|+.+. +.. ...|+|+.+.+ |+- .. ..-..
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~-~~~diViTDlP-YG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAG-FTPDIVITDLP-YGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT----SEEEEE---CCCSSSTTS---HHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccC-CCCCEEEecCC-CcccccccCCCCCCcHH
Confidence 11122367777777662 222 44699999853 332 11 12357
Q ss_pred HHHHHHHhcccCCEEEE
Q 016992 210 TVLYARDKWLVDDGIVL 226 (379)
Q Consensus 210 ~~l~~~~~~LkpgG~li 226 (379)
.++..+..+|-+++++.
T Consensus 195 ~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHhhCCCCcEEE
Confidence 89999999995555544
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=57.72 Aligned_cols=114 Identities=17% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g----~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+.|.+.+.+.+..+|+|..||+|++...+++. + ...++|.|+++ ....|+-++--.|+...+....+|...-+
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~ 254 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNP 254 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCC
Confidence 344555455567779999999999888877763 2 25799999999 99999999988887533566666654433
Q ss_pred C-----CCCceeEEEEecCccccCChh----------------------hHHHHHHHHHhcccCCEE
Q 016992 185 L-----PVTKVDIIISEWMGYFLLFEN----------------------MLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 185 ~-----~~~~~D~Iv~~~~~~~l~~~~----------------------~~~~~l~~~~~~LkpgG~ 224 (379)
. ..++||.|+++++.+.....+ ....++..+...|+|||+
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 2 236799999987543111110 114677788889999773
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.025 Score=56.84 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-----------cc-
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----------IE- 184 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~- 184 (379)
..++.+|+-+|||. |..++.+|+ .|+ .|+++|.++ .++.+++ .|. +++..+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEEeccccccccccchhhhcch
Confidence 45789999999997 778888888 687 899999999 8887765 332 221111110 00
Q ss_pred ---------CC--CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ---------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ---------~~--~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+. ...+|+||... +......+..+.+...+.+||||+++.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 01 13589999642 122212233335888899999999884
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.029 Score=50.79 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHc-----CCCCcEEEEEcceeecc---CCCCc-eeE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEAN-----GFSNVITVLKGKIEEIE---LPVTK-VDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~~~~-~D~ 192 (379)
...+||++|+|+|..++.+|..+...|.--|....+...+.+...+ .+...+.+...+..... +-.+. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4568999999999999999886556899888877433333333322 22224544444443322 11233 899
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|++.-+ +..+.....++..++.+|..+|.++
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCeEE
Confidence 997543 3334555666777777888888443
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.014 Score=50.31 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=69.7
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHHH-H------HHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQM-A------NMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~~-~------~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
....+.+|.+|+|+=.|.|.++..++.. |. +.|++.=..+. . ...+...++... .+++.+-.+...+..+
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~~p 120 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALGAP 120 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccCCC
Confidence 3466789999999999999999999984 43 57887655441 1 111111111222 2355555555555533
Q ss_pred CCceeEEEEecCcc----ccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 187 VTKVDIIISEWMGY----FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~----~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+..|++......+ -..+.....++..++.+.|||||+++...
T Consensus 121 -q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 121 -QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 6667766532211 12234556788899999999999987543
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.014 Score=54.62 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L- 185 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~- 185 (379)
+...+...++..++|.--|.|+-+..+.+ .+..+|+|+|.++ +++.|++++... .+++.++++++.++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHcc
Confidence 33344567888999999999999999998 4558999999999 999998877644 478999999988764 2
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
...++|.|+.++
T Consensus 90 ~~~~~dgiL~DL 101 (310)
T PF01795_consen 90 GINKVDGILFDL 101 (310)
T ss_dssp TTS-EEEEEEE-
T ss_pred CCCccCEEEEcc
Confidence 336899999874
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=53.88 Aligned_cols=92 Identities=29% Similarity=0.287 Sum_probs=63.9
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecCcc
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWMGY 200 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~~~ 200 (379)
+++|+-||.|++++.+.++|...|.++|+++ +++.-+.+.. ....+|+.++. ++. .+|+++..++|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 6999999999999999999988999999999 8888777763 67888998876 332 599999988776
Q ss_pred ccCChh-----------hHHHHHHHHHhcccCCEEEE
Q 016992 201 FLLFEN-----------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 201 ~l~~~~-----------~~~~~l~~~~~~LkpgG~li 226 (379)
.+...+ ....+++.+ +.++|.-.++
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ 108 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLL 108 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEE
T ss_pred eEeccccccccccccchhhHHHHHHH-hhccceEEEe
Confidence 654433 122333333 4467776555
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.05 Score=50.24 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=66.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----- 185 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 185 (379)
+...+...++...+|.--|.|+.+..+... + .++++|+|.++ +++.|++.....+ +++.+++.++.++..
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 444566778899999999999999998884 3 36899999999 9999999998766 689999998877642
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+++|-|+.++
T Consensus 93 ~i~~vDGiL~DL 104 (314)
T COG0275 93 GIGKVDGILLDL 104 (314)
T ss_pred CCCceeEEEEec
Confidence 246889998763
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.018 Score=54.49 Aligned_cols=97 Identities=22% Similarity=0.173 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~ 199 (379)
..+|||.=+|+|.=++-++. .+..+|+.=|+|+ +++.+++|+..|.. ....++..|+..+-.. ...||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCCCC
Confidence 67999999999999998888 5656999999999 99999999999943 3366676887766432 3789999888764
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ +..++++..+.++.||.+..
T Consensus 132 S-------PaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 132 S-------PAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred C-------CchHHHHHHHHhhcCCEEEE
Confidence 3 44567777788888998763
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0065 Score=55.51 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHH-------HHHHH--HcCCCCcEEEEEcceeeccC-CCC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMA-------KQIVE--ANGFSNVITVLKGKIEEIEL-PVT 188 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a-------~~~~~--~~~~~~~i~~~~~d~~~~~~-~~~ 188 (379)
...+++|||+|||+|..++.+...|+..+...|.+. .++.- .-.+. .+....-..+.+.+..+..+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 468899999999999999999998878899999887 55211 00000 00010112222221111111 013
Q ss_pred --ceeEEEEecCccccCChhhHHHH-HHHHHhcccCCEEEEe
Q 016992 189 --KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 --~~D~Iv~~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lip 227 (379)
.||+|.+.-+.|-. ...+.+ +.....+++++|+++.
T Consensus 194 ~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhh
Confidence 67888764333332 333444 5666778899998763
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0028 Score=61.79 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC----CCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----VTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~D~I 193 (379)
.++-+|||.=|++|+-++..|+ . |..+|++-|.++ .++..+++++.|+..+.++..+.|+..+-.. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3456899999999999999888 3 678999999999 9999999999999988899999998765432 4789999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
=.++.| ....+|+...+.++.||.+...
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEE
Confidence 988753 3456788888888999998743
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.037 Score=50.82 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--CCC-CcEEEEEcceeecc--CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GFS-NVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~--~~~-~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
...++||-||-|.|......+++ ....+.-+|+.. .++..++..... |.. .+|.++-||...+- ...++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45679999999999998888885 346889999999 889888887653 332 56888888876542 224889999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+.-.-...... -...+...+.+.||+||+++.
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 9864221111111 124566677899999999883
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.044 Score=52.41 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
...++.+||-.|||. |.++..+++ .|+.+|+++|.++ .++.+++ .|...-+.....+..++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345788999999864 566667777 5777899999998 8887765 34321111111122222111235898884
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .+ . ...+....+.|++||.++
T Consensus 242 ~-~G-------~-~~~~~~~~~~l~~~G~iv 263 (343)
T PRK09880 242 V-SG-------H-PSSINTCLEVTRAKGVMV 263 (343)
T ss_pred C-CC-------C-HHHHHHHHHHhhcCCEEE
Confidence 2 22 1 234555667899999988
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.035 Score=49.16 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHH--HcCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcceeeccCC-----CCceeE
Q 016992 122 KDKVVLDVGAGTGILSLFCA--KAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la--~~g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~-----~~~~D~ 192 (379)
++.++||||.|.--+=-.+. ..|. +.+|.|+++ .+..|+.++..| ++...|++....-.+--++ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 45689999998753211121 2344 899999999 999999999998 7777777765432222122 588999
Q ss_pred EEEecC
Q 016992 193 IISEWM 198 (379)
Q Consensus 193 Iv~~~~ 198 (379)
+.|+++
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999985
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.099 Score=50.96 Aligned_cols=104 Identities=24% Similarity=0.228 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-eee-c-cC-CCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE-I-EL-PVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~~~ 190 (379)
....++.+||.+|||. |..+..+|+ .|..+|+++|.++ ..+.+++.. +. ..+.....+ ... + .+ ....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567889999999987 888888888 5766799999999 988887642 21 112222111 110 1 11 22468
Q ss_pred eEEEEecCccc-------------cCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYF-------------LLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~-------------l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+... +.. +...++....+....+.|+++|.++
T Consensus 256 D~vld~v-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 256 DVCIDAV-GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred CEEEECC-CCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 9888532 110 0011223456777889999999987
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.089 Score=47.86 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=70.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv 194 (379)
...|+.|+-+| -.-..+++++-.| +++|..||+++ .++...+.++..|+ ++|+.+.-|+.+. +| ..+||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCeee
Confidence 45678899999 4446666666643 57999999999 99999999999999 5689998888764 22 47899999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCC
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
.+++-.. ..+..++..--..||.-
T Consensus 227 TDPpeTi----~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPETI----KALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchhhH----HHHHHHHhccHHHhcCC
Confidence 9875222 44555665544556654
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.073 Score=48.04 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.+.+|+...|+|+.+|+++..+.+.+- .|++||.-+|.... -.. +.|+....|-..+.....+.|-.||+++
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hcc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 356899999999999999999999865 99999987743322 122 4588888888777653478999999875
Q ss_pred ccccCChhhHHHHHHHHHhcccCC
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
..+..+-..+..+|..|
T Consensus 280 -------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 -------EKPARVAALIAKWLVNG 296 (358)
T ss_pred -------cCcHHHHHHHHHHHHcc
Confidence 44556666666777654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.085 Score=49.23 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~ 166 (379)
-.+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 37899999999999999998888864 999999999 99999999864
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.15 Score=48.75 Aligned_cols=109 Identities=21% Similarity=0.173 Sum_probs=74.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEcceeec
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEI 183 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~ 183 (379)
+.......++....|+|.|-|.+..++|. .+.+.=+|+++.+ ..+.|..+.. ..|- ++.++.+++++.+-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 33335567889999999999999888887 4667778888876 5554443332 2333 35688888887654
Q ss_pred cCC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 ELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..- ....++|+++.+ .+. +.+..=+.++..-+++|.++|
T Consensus 264 ~~v~eI~~eatvi~vNN~---~Fd-p~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNV---AFD-PELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred HHHHHHhhcceEEEEecc---cCC-HHHHHhhHHHHhhCCCcceEe
Confidence 311 366899998754 222 444444457888899999988
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.077 Score=47.19 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~ 162 (379)
-.+|..|||.-||+|..+.++.+.|- +.+|+|+++ .+++|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 46799999999999999998888865 899999999 9998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.32 Score=44.26 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH----cC--CCEEEEEecHH---------------------
Q 016992 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVECSQ--------------------- 155 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~----~g--~~~v~~vD~s~--------------------- 155 (379)
...|...+..++.......-...|+|+||-.|..++.++. .+ ..++++.|.=+
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 3455666666666654333344899999999987766543 12 35788877311
Q ss_pred ------HHHHHHHHHHHcCC-CCcEEEEEcceeeccC--CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 156 ------MANMAKQIVEANGF-SNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 156 ------~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.++..++++.+.|+ .+++.++.|.+.+.-. +.+++-++..+. + .+ ......|..++..|.|||+++
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-D---lY-esT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-D---LY-ESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SH-HHHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec-c---ch-HHHHHHHHHHHhhcCCCeEEE
Confidence 22333444444453 3679999999876421 234555555442 1 11 345688899999999999999
Q ss_pred ecCCce
Q 016992 227 PDKASL 232 (379)
Q Consensus 227 p~~~~~ 232 (379)
+.....
T Consensus 210 ~DDY~~ 215 (248)
T PF05711_consen 210 FDDYGH 215 (248)
T ss_dssp ESSTTT
T ss_pred EeCCCC
Confidence 766544
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.24 Score=48.63 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+|++|+-+|+|. |.....+++ .|+ +|+.+|.++ ....|+. .|. ..+ +..+. . ..+|+|+..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~a 264 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTT 264 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEEC
Confidence 36899999999997 655555555 577 899999998 7776654 343 222 11221 1 357999853
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. +....+-....+.+|+||+++.
T Consensus 265 t--------G~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 265 T--------GNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred C--------CCHHHHHHHHHhcCCCCcEEEE
Confidence 1 1222223344788999999873
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.053 Score=51.37 Aligned_cols=71 Identities=24% Similarity=0.275 Sum_probs=54.1
Q ss_pred EEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccccC
Q 016992 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLL 203 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~ 203 (379)
|+|+-||.|+++.-+.++|...+.++|+++ +++.-+.++. + .++.+|+.++... ...+|+++..++|..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 689999999999999889987788999999 8777776642 2 4456788777532 24689999887665543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.12 Score=51.92 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee---------------
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--------------- 182 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--------------- 182 (379)
.++.+|+-+|+|. |..+..+++ .|+ .|+++|.++ .++.++. .|. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 4678999999996 666776777 576 799999999 7766654 232 222222211
Q ss_pred --------ccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 183 --------IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 183 --------~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+......+|+|+...+ +.+.+.+.-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1101256999987542 2222233335566778899999987
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.19 Score=45.27 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~ 167 (379)
.+|..|||.-||+|..+..+.+.|. +.+|+|+++ ..+.|.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 5889999999999999998888865 899999999 999998888753
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.024 Score=54.51 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=57.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcceeec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (379)
...+|..|.|+.||-|.+++.+++.+ +.|++-|.++ ++++.+.+++-|.+... |+++..|+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 34789999999999999999999987 6999999999 99999999999888755 89988887654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.066 Score=48.21 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=40.1
Q ss_pred EEEEEcceeec--cCCCCceeEEEEecCccccC-----C--------hhhHHHHHHHHHhcccCCEEEE
Q 016992 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~-----~--------~~~~~~~l~~~~~~LkpgG~li 226 (379)
++++++|+.++ .++++++|+|+.+++ |.+. + .......+.++.|+|||||.++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 46788998876 577899999999975 5431 0 1234578899999999999887
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.077 Score=49.50 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=40.8
Q ss_pred cEEEEEcceeec--cCCCCceeEEEEecCccccC--------------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 172 VITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 172 ~i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+++++|+.++ .+++++||+|+++++ |.+. +...+..++.++.++|||||.|+.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 357899999885 356689999999975 4331 012235788999999999999874
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.059 Score=41.89 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~ 155 (379)
+.....|||||+|.+.-.+..-|. .=+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 445799999999999999988776 667888643
|
; GO: 0008168 methyltransferase activity |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.18 Score=48.75 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-ecc-CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EIE-LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~-~~~~~~D~ 192 (379)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.....+.. .+. ...+.+|+
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4567889999999764 556666677 5776899999998 8877754 343211111111111 110 11236898
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+-. .+. ...+....+.|+++|.++.
T Consensus 263 vid~-~G~--------~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEM-AGS--------VPALETAYEITRRGGTTVT 288 (371)
T ss_pred EEEC-CCC--------hHHHHHHHHHHhcCCEEEE
Confidence 8842 211 1344555678999999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.31 Score=46.60 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~--~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..+|.+||-+|||. |.++..+++ .|..+|+++|.++ .++.+++ .+. ...+ + ++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hhh-hccCCcEEEE
Confidence 46789999999875 555555555 3667899999999 8888764 221 1111 1 111 1124898883
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+. ......+....++|++||+++
T Consensus 229 -~~G~-----~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 229 -CVGG-----RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred -CCCC-----CccHHHHHHHHHhCcCCcEEE
Confidence 2221 112345666678999999987
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.3 Score=40.82 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEccee
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIE 181 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~ 181 (379)
..|+..+-+.+.+..... ...|+.||||-=.-..-+......+++=||..++++.-++.+...+. ..+..++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 345555556665544322 34799999997655554432212467777776677777777776543 366889999986
Q ss_pred ec-----c---CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 182 EI-----E---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 182 ~~-----~---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+- . +.....-+++++.+..++. +.....++..+.....||+.+++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 21 0 1223456888887765553 45678899999888889999886543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.23 Score=46.10 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 123 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
+.+|.-||.|. |.-+.-+|- .|+ .|+.+|+|. .+......+. .++..+......+...-.+.|+||...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 34677788775 444444444 344 999999998 7777665543 5688888777777655578999997643
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+...+.-+.+++.+.+|||++++
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEE
Confidence 3444566667788889999999988
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.25 Score=46.47 Aligned_cols=83 Identities=25% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
.++.+||-+|||. |.++..+|+ .|+..|+++|.++ .++.|.+. . ++ |..+. ....+|+|+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~- 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDA- 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEEC-
Confidence 4577899999874 677777777 5887788899888 76666431 1 11 11110 12468988842
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+ . ...+....+.|+++|+++
T Consensus 208 ~G-------~-~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 208 SG-------D-PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred CC-------C-HHHHHHHHHhhhcCcEEE
Confidence 22 1 234556668899999988
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.7 Score=44.39 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-cc--CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (379)
....+|.+||-.|+|. |..+..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.....+..+ +. .....+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567899999999764 566666777 5776799999998 8777754 3432111111111111 10 1224589
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+- ..+ . ...+....+.|++||+++.
T Consensus 248 ~vid-~~g-------~-~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 248 VVID-AVG-------R-PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred EEEE-CCC-------C-HHHHHHHHHHhccCCEEEE
Confidence 8884 221 1 1234455678999999873
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.14 Score=48.89 Aligned_cols=74 Identities=27% Similarity=0.227 Sum_probs=56.9
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC--C-ceeEEEEecCc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEWMG 199 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~~D~Iv~~~~~ 199 (379)
.+++|+-||.|++.+-+...|..-+.++|+++ .++.-+.+... ..++..|+.++.... . .+|+++..++|
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 58999999999999999899988899999999 77776665542 356667777654321 2 78999998877
Q ss_pred cccC
Q 016992 200 YFLL 203 (379)
Q Consensus 200 ~~l~ 203 (379)
..+.
T Consensus 78 Q~FS 81 (328)
T COG0270 78 QDFS 81 (328)
T ss_pred cchh
Confidence 6553
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.21 Score=46.26 Aligned_cols=93 Identities=26% Similarity=0.213 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ceeeccCCCCceeEEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEEIELPVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~D~Iv 194 (379)
..++.+||-+|+|+ |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+..... .+.++ .....+|+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence 45889999998864 556666676 5776799999888 7777665 343211111000 00111 1124589888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-. .+ . ...+....+.|+++|+++
T Consensus 193 d~-~G-------~-~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 193 EF-SG-------A-TAAVRACLESLDVGGTAV 215 (280)
T ss_pred EC-CC-------C-hHHHHHHHHHhcCCCEEE
Confidence 42 21 1 234555668899999987
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.7 Score=41.50 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc----------CC-------CEEEEEecHH--HHHHHHHH------HHHcCCCCcEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA----------GA-------AHVYAVECSQ--MANMAKQI------VEANGFSNVITV 175 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~----------g~-------~~v~~vD~s~--~~~~a~~~------~~~~~~~~~i~~ 175 (379)
...-+|+|+||..|..++.+... .. -+|+--|.-. .-.+.+.. ....+ +--+.-
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~~f~~g 93 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-NYFVSG 93 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-SEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-eEEEEe
Confidence 44458999999999887766431 01 2677777533 22222211 11111 011333
Q ss_pred EEcceeeccCCCCceeEEEEecCccccCCh------------------------------------hhHHHHHHHHHhcc
Q 016992 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFE------------------------------------NMLNTVLYARDKWL 219 (379)
Q Consensus 176 ~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~------------------------------------~~~~~~l~~~~~~L 219 (379)
+.+.+..--+|.++.|+++|....+.|... .++..+|+...+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 455665555778999999986433333210 23357788888999
Q ss_pred cCCEEEE
Q 016992 220 VDDGIVL 226 (379)
Q Consensus 220 kpgG~li 226 (379)
+|||+++
T Consensus 174 v~GG~mv 180 (334)
T PF03492_consen 174 VPGGRMV 180 (334)
T ss_dssp EEEEEEE
T ss_pred ccCcEEE
Confidence 9999998
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.3 Score=39.05 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=65.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCc----hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-e
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-E 181 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G----~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~ 181 (379)
.|+.++. .-..-+.+++++|+.| .+++.+|. .-.+++++|-..+ .+...++.+...++.+.++|+.++. +
T Consensus 31 EfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 31 EFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred HHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 4545554 3345568888866644 23333333 3235888888887 7777788888888877789999885 3
Q ss_pred eccCCCCceeEEEEecCccccCChhhHH-HHHHHHHhcccCCEEEE
Q 016992 182 EIELPVTKVDIIISEWMGYFLLFENMLN-TVLYARDKWLVDDGIVL 226 (379)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l~~~~~~~-~~l~~~~~~LkpgG~li 226 (379)
++......+|+++.+. -. .+.. .+|+.+. +.|.|-++
T Consensus 108 ~~~~~~~~iDF~vVDc---~~---~d~~~~vl~~~~--~~~~GaVV 145 (218)
T PF07279_consen 108 EVMPGLKGIDFVVVDC---KR---EDFAARVLRAAK--LSPRGAVV 145 (218)
T ss_pred HHHhhccCCCEEEEeC---Cc---hhHHHHHHHHhc--cCCCceEE
Confidence 4433346789999653 11 2333 5665442 45556555
|
The function of this family is unknown. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.59 Score=46.62 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---------------
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 186 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------------- 186 (379)
..+++|+-||.|++++.+-..|...|.++|+++ +.+.-+.+.... .....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 458999999999999999888887889999999 777666554211 1134455666665421
Q ss_pred --CCceeEEEEecCccccC
Q 016992 187 --VTKVDIIISEWMGYFLL 203 (379)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~ 203 (379)
...+|+++..++|..+.
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred ccCCCCCEEEEcCCCCccc
Confidence 13589999887766543
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.39 Score=45.89 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~ 192 (379)
+...+|..|+|.+|..|..+.++|.. ...+++|.|.+. -++..++.+...|.+ .+..+.+|+...+.+ -+.+-.
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCCCcccccceeE
Confidence 55678899999999999999999883 357999999999 999999999999985 477779998875322 244566
Q ss_pred EEEecCcc
Q 016992 193 IISEWMGY 200 (379)
Q Consensus 193 Iv~~~~~~ 200 (379)
|++++-++
T Consensus 288 iL~DpscS 295 (413)
T KOG2360|consen 288 ILVDPSCS 295 (413)
T ss_pred EEeCCCCC
Confidence 77776443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.1 Score=43.51 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcccCCEEEEe
Q 016992 208 LNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 208 ~~~~l~~~~~~LkpgG~lip 227 (379)
+..+|+...+-|.|||.++.
T Consensus 216 ~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 216 LAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred HHHHHHHHHHHhccCcEEEE
Confidence 45778888899999999983
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.47 Score=45.50 Aligned_cols=91 Identities=24% Similarity=0.463 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEec---HH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~---s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (379)
..+|.+||-+|+|. |.++..+++ .|+ +|++++. ++ ..+.+++ .|.. .+.....+..+... ...+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~-~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKL-VGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhh-cCCCCEE
Confidence 45788999999874 666777777 576 7999986 55 6665543 4431 12111111111111 2468988
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+-. .+ . ...+....+.|++||.++
T Consensus 243 id~-~g-------~-~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 243 IEA-TG-------V-PPLAFEALPALAPNGVVI 266 (355)
T ss_pred EEC-cC-------C-HHHHHHHHHHccCCcEEE
Confidence 842 21 1 135566678899999987
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.35 Score=42.64 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+.|.+........-|.+||.|+|+++..+..+|..+...||.+. ++.-.+-..+... .+..++++|+..+.
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceeh
Confidence 344566566677789999999999999999999988999999998 8877766555443 46888889886653
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.57 Score=44.71 Aligned_cols=44 Identities=36% Similarity=0.380 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIV 164 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~ 164 (379)
..-..|+|+|+|.|.++.+++-.-.-.|+|||-|. ..+.|++.-
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHH
Confidence 44568999999999999999884234999999999 777776543
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.41 Score=44.54 Aligned_cols=73 Identities=25% Similarity=0.245 Sum_probs=51.3
Q ss_pred EEEEcCCCchHHHHH-HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-------CCCceeEEEEe
Q 016992 126 VLDVGAGTGILSLFC-AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIISE 196 (379)
Q Consensus 126 VLDlGcG~G~~~~~l-a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~Iv~~ 196 (379)
=+|||.|+-.+--.+ ++.......++|+.+ .+..|..++.++++++.|.+++....+..+ ++..||.+.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 378887764332222 222235789999999 999999999999999989988875533221 13458999998
Q ss_pred cC
Q 016992 197 WM 198 (379)
Q Consensus 197 ~~ 198 (379)
++
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 75
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.91 Score=44.11 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=56.2
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ceee-c-cCCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~ 190 (379)
....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|....+..... +..+ + .+..+.+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHhCCCC
Confidence 4567899999999864 556666677 5776899999998 8888754 343211111110 1111 1 0111368
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
|+|+-. .+ . ...+......+++| |.++
T Consensus 270 dvvid~-~G-------~-~~~~~~a~~~~~~g~G~~v 297 (381)
T PLN02740 270 DYSFEC-AG-------N-VEVLREAFLSTHDGWGLTV 297 (381)
T ss_pred CEEEEC-CC-------C-hHHHHHHHHhhhcCCCEEE
Confidence 988842 21 1 13444555678886 8766
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.72 Score=39.86 Aligned_cols=98 Identities=24% Similarity=0.279 Sum_probs=61.9
Q ss_pred EEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeeccC
Q 016992 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 125 ~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~ 185 (379)
+|.-||+|+ | .++..++..|. .|+.+|.++ .++.+++.+... + + -.++++. .|..++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH--
Confidence 467789987 3 55666677776 999999999 988887777541 1 1 1345533 344444
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
...|+|+=.. .........++.++.+.+.|+..|.-++.++
T Consensus 77 --~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 --VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 3589888432 2333566789999999999998887544443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.8 Score=41.85 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCchHHHHHHHc-C--------CCEEEEEecHH-HHHHHHHHHHHc-----CCCCcEEEEEcceeeccCCC
Q 016992 123 DKVVLDVGAGTGILSLFCAKA-G--------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~-g--------~~~v~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 187 (379)
.-+|+|+|+|+|.++..+.+. . ..+++.||.|+ +.+.-++.+... .+..+|.+.. +..+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~-~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLD-DLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEES-SGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhh-hhhccc---
Confidence 469999999999999988772 1 24899999999 888877776542 2334577732 433332
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
..-+|+++=
T Consensus 95 -~~~~iiaNE 103 (252)
T PF02636_consen 95 -FPGFIIANE 103 (252)
T ss_dssp -CCEEEEEES
T ss_pred -CCEEEEEee
Confidence 346666643
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.47 Score=45.33 Aligned_cols=98 Identities=23% Similarity=0.235 Sum_probs=56.3
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
....++.+||-.|+|+ |.++..+|+ .|+..|++++.++ ..+.+++ .|...-+.....+...+. .....+|.
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456789999998764 556666666 5776689999888 7776643 343111111111111110 12245774
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.+..+. ...+....+.|++||.++.
T Consensus 232 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 232 LILETAGV--------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEE
Confidence 44343321 2355666688899999873
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.44 Score=45.27 Aligned_cols=96 Identities=26% Similarity=0.231 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
....+|.+||-+|+|. |.++..+++ .|+++|++++.++ ..+.+++ .|...-+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4567799999998753 455556666 5776699999988 7777654 343211111111111110 12246999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+-. .+ . ...+....+.|+++|.++
T Consensus 235 vid~-~g-------~-~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIEC-SG-------N-TAARRLALEAVRPWGRLV 259 (339)
T ss_pred EEEC-CC-------C-HHHHHHHHHHhhcCCEEE
Confidence 9842 11 1 223445557899999987
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.61 Score=42.19 Aligned_cols=95 Identities=29% Similarity=0.354 Sum_probs=56.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~ 192 (379)
....++.+||..|+|+ |.....+++ .| .+|++++.++ ..+.+++. +....+.....+... + ......+|+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 3347889999999986 666666666 45 5999999988 77766542 221111111101100 0 112357999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++... + . ...+....+.|+++|.++
T Consensus 205 vi~~~-~----~----~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 205 VIDAV-G----G----PETLAQALRLLRPGGRIV 229 (271)
T ss_pred EEECC-C----C----HHHHHHHHHhcccCCEEE
Confidence 98532 1 1 134555667889999987
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.72 Score=48.45 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHH-c-------C-----CCEEEEEecHH-HHHH--------------HHHHHHH-----cC
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECSQ-MANM--------------AKQIVEA-----NG 168 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~-------g-----~~~v~~vD~s~-~~~~--------------a~~~~~~-----~~ 168 (379)
+.-+|+|+|=|+|...+.+.+ . + .-+++++|..+ ..+. +++.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999975554442 1 1 23899999754 2222 2222211 12
Q ss_pred C------CC--cEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 169 F------SN--VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 169 ~------~~--~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+ .+ .+++..+|+.+.-.. ...||+++.+.+.-.-.-+-.-..++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 01 345667787654211 2569999987643222111122689999999999999998
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.48 Score=44.17 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=37.6
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~ 163 (379)
....+|.+|.-+|+|. |+...+-|+ +|+.+++|||+++ ..+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 4568999999999997 555556666 6999999999999 88888763
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.63 Score=37.36 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=52.1
Q ss_pred CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCceeEEEEecCccccC
Q 016992 132 GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 132 G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~Iv~~~~~~~l~ 203 (379)
|.|..+..+|+ .| .+|+++|.++ ..+.+++ .|.. .++..+-.++. .+...+|+|+-. .+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEES-SS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEe-cC----
Confidence 45888888998 57 7999999999 8888765 3421 22322222111 223579999842 21
Q ss_pred ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 204 FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
. ...++....+|+++|.++..
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEEEE
Confidence 1 35667777899999998843
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.90 E-value=1.8 Score=41.12 Aligned_cols=88 Identities=17% Similarity=0.035 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....+|.+||-.|+|. |.++..+|+ .|+ +|++++.++ ..+.+++ .|... ++. ..+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc--CcccceEEE
Confidence 4567899999999753 455566666 576 799999988 7776655 44421 111 1111 124578765
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-. ... ...+....+.|++||+++
T Consensus 229 ~~---~~~------~~~~~~~~~~l~~~G~~v 251 (329)
T TIGR02822 229 LF---APA------GGLVPPALEALDRGGVLA 251 (329)
T ss_pred EC---CCc------HHHHHHHHHhhCCCcEEE
Confidence 31 111 134666678899999987
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.57 Score=44.19 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=40.4
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~ 163 (379)
......+|.+|.-+|||. |..++.-|+ .|+.+|++||+++ .+++|++.
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 335678899999999986 777777777 6999999999999 99998863
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.1 Score=43.60 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=56.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--cceee-cc-CCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-IE-LPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~~-~~~~~~ 190 (379)
....+|.+||-.|+|+ |.++..+|+ .|+..|+++|.++ ..+.|++ .|...-+.... .+..+ +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998764 555666666 5777799999888 7777644 34421111111 01111 10 111368
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
|+|+-. .+ . ...+....+.|++| |.++
T Consensus 265 d~vid~-~G-------~-~~~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 265 DYSFEC-VG-------D-TGIATTALQSCSDGWGLTV 292 (378)
T ss_pred CEEEEC-CC-------C-hHHHHHHHHhhccCCCEEE
Confidence 988842 22 1 12344556778998 9987
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.6 Score=41.41 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---eeeccCCCCceeEEEE
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~D~Iv~ 195 (379)
++.+||..|||. |..+..+++ .|..+|++++.++ ..+.+++ .+.. .++..+ ...+......+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999988765 556666666 5766899999888 7776554 2331 122111 1112111245899985
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. + . ...+....+.|+++|.++
T Consensus 238 ~~-g----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 238 AS-G----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred CC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 31 1 0 123556678899999987
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.2 Score=41.92 Aligned_cols=97 Identities=23% Similarity=0.243 Sum_probs=58.3
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCcee
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVD 191 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D 191 (379)
.....++.+||..|+|. |..+..+|+ .|. +|++++.++ ..+.+++ .|....+.....+... + ......+|
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 34467788999988763 677777777 565 799999988 8777754 3432111111001000 0 12235789
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++... + ....+....+.|+++|.++.
T Consensus 235 ~vid~~-g--------~~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 235 VIFDFV-G--------TQPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred EEEECC-C--------CHHHHHHHHHHhhcCCEEEE
Confidence 888421 1 02356667789999999873
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=90.34 E-value=4.4 Score=34.36 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeec---c-
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI---E- 184 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~- 184 (379)
.+.+.+.+. ...+.+|+-|||=+-...+.-...+..+++..|.+. ++...+ ++ .|+.-|.... +
T Consensus 14 ~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~~ 81 (162)
T PF10237_consen 14 FLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELPE 81 (162)
T ss_pred HHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhhh
Confidence 334444432 235679999999774433333123456899999986 222222 22 3444444321 1
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+ .++||+||++++ + ..+..+.+....+..++|+++.++..
T Consensus 82 ~l-~~~~d~vv~DPP-F--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 82 EL-KGKFDVVVIDPP-F--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hc-CCCceEEEECCC-C--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 2 379999999986 2 44566667777777788998888843
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.043 Score=45.52 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=39.2
Q ss_pred EEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 173 i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+.+++--..+..+.++++|+|+++-+..++.. .....+++++.++|||||++-.+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 44444444445677899999998755444432 3446889999999999999875433
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.75 E-value=8.9 Score=34.74 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~----g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
..+...+|+|+|+...+..+... | ..+++.+|+|. .+....+.+...-..-.|.-+++|.+.-- ++... --
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~R 155 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGG-RR 155 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCC-eE
Confidence 45779999999998777766552 3 36899999999 66654444433222223666777765421 22122 22
Q ss_pred EEEecCccccC--ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++- +++.+. ..+....++..+...|+||-.++.
T Consensus 156 l~~f-lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVF-LGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEE-ecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 3321 233332 245567889999999999988773
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.2 Score=41.85 Aligned_cols=84 Identities=30% Similarity=0.309 Sum_probs=51.5
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|. .+. +..+. . ...|+||+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 36899999999997 544444455 566 899999988 5433332 232 222 22222 2 457998863
Q ss_pred cCccccCChhhHHHHHH-HHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVLY-ARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~-~~~~~LkpgG~li 226 (379)
. +. ..++. .....+|+|++++
T Consensus 258 T--------G~-~~vI~~~~~~~mK~Gaili 279 (406)
T TIGR00936 258 T--------GN-KDVIRGEHFENMKDGAIVA 279 (406)
T ss_pred C--------CC-HHHHHHHHHhcCCCCcEEE
Confidence 2 12 23333 4667899999887
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.6 Score=37.13 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=59.6
Q ss_pred EEcCCCchHHHHHHH-cC-CCEEEEE--ecHH-HHHH---HHHHHHHcCCCCcEEEEEcceeeccC----CCCceeEEEE
Q 016992 128 DVGAGTGILSLFCAK-AG-AAHVYAV--ECSQ-MANM---AKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIIS 195 (379)
Q Consensus 128 DlGcG~G~~~~~la~-~g-~~~v~~v--D~s~-~~~~---a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv~ 195 (379)
=||=|.=.++..+++ .+ ...++|. |..+ ..+. +..+++...-.+.......|+..+.. ...+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 356666677777777 35 5566654 4444 3322 33444443221223345557777652 3578999998
Q ss_pred ecCcccc----------CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+..+. .+...+..++..+.++|+++|.+..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8653331 1123457888899999999999873
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=2.3 Score=41.98 Aligned_cols=83 Identities=27% Similarity=0.300 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..|++|+-+|+|. |......++ .|+ +|+.+|.++ ....+.. .|. .+. ++.+. + ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea-l--~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEA-A--ELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHH-H--hCCCEEEECC
Confidence 4899999999985 433333333 576 899999988 5443322 232 222 22222 1 4689998632
Q ss_pred CccccCChhhHHHHHH-HHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLY-ARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~-~~~~~LkpgG~li 226 (379)
+. ..++. .....+|+|++++
T Consensus 276 --------G~-~~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 276 --------GN-KDVITAEHMEAMKDGAILA 296 (425)
T ss_pred --------CC-HHHHHHHHHhcCCCCCEEE
Confidence 12 22343 5668899999887
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.6 Score=37.76 Aligned_cols=110 Identities=13% Similarity=0.227 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhccCCCCCC-EEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEcce
Q 016992 105 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKI 180 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~-~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~ 180 (379)
.|+..+...+.+.....++. .|+.||||-=.....+... +..+++-+|..++++.-++.+...+. +.+.+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 45555555555544333444 8999999988777777763 35588888887766666666666532 12345788888
Q ss_pred eecc---------CCCCceeEEEEecCccccCChhhHHHHHHHH
Q 016992 181 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYAR 215 (379)
Q Consensus 181 ~~~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~ 215 (379)
.+.. +.....-+++++.+..++. +.....+++.+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~-~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS-PEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCC-HHHHHHHHHHh
Confidence 7532 2235678888888766553 34455555543
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.6 Score=40.11 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=47.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHc------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~------g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
..+.+...+.++..++|+|||.|.++..+++. +...++.||... -.+ +...+........++=+..|+.++.
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccc
Confidence 33444444567789999999999999999983 235899999866 332 2222333221123666777888876
Q ss_pred C
Q 016992 185 L 185 (379)
Q Consensus 185 ~ 185 (379)
+
T Consensus 87 l 87 (259)
T PF05206_consen 87 L 87 (259)
T ss_pred h
Confidence 4
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.5 Score=43.52 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=54.2
Q ss_pred HHHHHhccC-CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 111 QNVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 111 ~~~i~~~~~-~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
.+.|.+... ...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|+ .++ ++.+. +
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa-l- 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDV-V- 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHH-H-
Confidence 344444332 25799999999996 433333334 566 899999988 5444322 232 222 22222 1
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...|+|+... +....+.......+|+||+++
T Consensus 308 -~~ADVVI~tT--------Gt~~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 308 -SEADIFVTTT--------GNKDIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred -hhCCEEEECC--------CCccchHHHHHhcCCCCCEEE
Confidence 4579998621 111222355567899999988
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.96 E-value=0.68 Score=45.32 Aligned_cols=101 Identities=25% Similarity=0.178 Sum_probs=58.9
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---ceee-cc--CCCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (379)
....++.+||-.|+|. |.++..+|+ .|+..|+++|.++ .++.|++ .|. + .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHcCCC
Confidence 4467888998888864 566666777 5887788888888 7777765 343 1 12211 1111 11 1224
Q ss_pred ceeEEEEecCcccc------CChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+|+++-. .+.-- .........+....+++++||.++
T Consensus 254 g~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 254 EVDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred CCcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 68988842 22100 000112246677778999999987
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.24 Score=38.74 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred ceeEEEEecCcc--cc-CChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGY--FL-LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~--~l-~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+||+|+|-.+.- +| .+..-+..+++.+...|+|||.+|
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li 41 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI 41 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE
Confidence 489999843211 11 123346789999999999999998
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.9 Score=41.31 Aligned_cols=95 Identities=21% Similarity=0.177 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceee-c-cCCCCce
Q 016992 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~~ 190 (379)
....+|.+||-.|+ | .|.++..+|+ .|+ +|++++.++ ..+.+++ ..|...-+..... +..+ + ......+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678999999998 3 5777788888 576 799999888 7666642 2344211211111 1111 1 0112468
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+-. ++ . ..+....+.|++||.++
T Consensus 230 D~v~d~-vG-------~--~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 230 DIYFDN-VG-------G--DMLDAALLNMKIHGRIA 255 (348)
T ss_pred EEEEEC-CC-------H--HHHHHHHHHhccCCEEE
Confidence 988842 21 1 24556668899999987
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.63 E-value=4.2 Score=38.25 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=57.4
Q ss_pred hccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceeec--cCCCC
Q 016992 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVT 188 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~ 188 (379)
......+|.+||-.|+ |.|..+..+|+ .|+ +|++++.++ ..+.+++ .|...-+..... +..+. .....
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCC
Confidence 3355678999999985 35677777788 566 899999888 7776643 444211111110 11110 01124
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+|+|+- .++ . ..+....+.|+++|.++
T Consensus 207 gvdvv~d-~~G-------~--~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 207 GYDCYFD-NVG-------G--EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred CeEEEEE-CCC-------H--HHHHHHHHHhCcCcEEE
Confidence 6999884 221 1 12355668899999988
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.7 Score=37.01 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
.+.+||-+|||. | ..+..+++.|.++++.+|.+ . .++.+.+++....-.-+++.+...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 457899999995 3 55667777899999999977 2 344455555543321234444433
Q ss_pred eeeccC--CCCceeEEEEe
Q 016992 180 IEEIEL--PVTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~--~~~~~D~Iv~~ 196 (379)
+....+ ....+|+|+..
T Consensus 100 i~~~~~~~~~~~~D~Vi~~ 118 (202)
T TIGR02356 100 VTAENLELLINNVDLVLDC 118 (202)
T ss_pred CCHHHHHHHHhCCCEEEEC
Confidence 322111 12578999864
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.1 Score=37.69 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHH-HHHHHHHHcCCCCcEE-EEEccee-eccCCCCceeEEEEecC
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-MAKQIVEANGFSNVIT-VLKGKIE-EIELPVTKVDIIISEWM 198 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~-~a~~~~~~~~~~~~i~-~~~~d~~-~~~~~~~~~D~Iv~~~~ 198 (379)
|++++-+|+..=..-..+.+.|+++|..||.++ -+. ..+ +++. +...|.. ++..-.++||++.|-..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 678899999876665666668999999999876 221 111 1111 1111211 11111377898877221
Q ss_pred -c-cccC-------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 -G-YFLL-------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 -~-~~l~-------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. .+|. ..+++ ..+..+.++|||||.++.
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE
Confidence 0 1111 11233 556678899999999883
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.17 E-value=2.7 Score=40.11 Aligned_cols=44 Identities=34% Similarity=0.364 Sum_probs=34.2
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~ 162 (379)
....+|.+||-.|+|. |..+..+|+ .|+ +|+++|.++ .++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567899999999965 666667777 576 799999998 8777754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.91 E-value=1.2 Score=42.57 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-ec-c-CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI-E-LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~-~-~~~~~~D 191 (379)
....++.+||-.|+|. |..+..+|+ .|...|+++|.++ ..+.+++ .|....+.....+.. .+ . .....+|
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 4567889999998763 555666677 5777899999988 7777664 343211111111110 01 0 1224689
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+.. .+ + ...+....+.|+++|.++
T Consensus 238 ~vld~-~g----~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 238 AVIIA-GG----G----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEEEC-CC----C----HHHHHHHHHHhhcCCEEE
Confidence 88842 11 1 234566678899999987
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.85 E-value=4.4 Score=38.48 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=60.2
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCCC-----CcEEEEEcceeeccCCCC
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGFS-----NVITVLKGKIEEIELPVT 188 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~~~~~~ 188 (379)
++|--||+|+ ..++..++..|. .|+..|.++ .++.++..+.. .++. .++++.. +..+. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5789999996 355666677776 999999998 77766554431 2211 2233322 22211 14
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..|+|+-.. .........++..+.+.++|+.+|--+
T Consensus 83 ~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 83 DADFIQESA----PEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred CCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 679888542 333355678888999999999855433
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=86.77 E-value=4.2 Score=39.95 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.1
Q ss_pred cCCCCCCEEEEEc-CC-CchHHHHHHHc---CCCEEEEEecHH-HHHHHHHH
Q 016992 118 KFLFKDKVVLDVG-AG-TGILSLFCAKA---GAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 118 ~~~~~~~~VLDlG-cG-~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~ 163 (379)
....+|.+||-+| +| .|.++..+|+. |+.+|+++|.++ .++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3456788999997 44 47777777774 446899999999 88888774
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.9 Score=40.27 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HH-HHHHHHHHHcCCCCcEEEEE-cceeeccCCCCceeEEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MA-NMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~-~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~Iv 194 (379)
..+|.+||-.|+|. |.++..+|+ .|+ +|++++.++ .. ..++ ..|.. .++. .+...+....+.+|+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN----RLGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH----hCCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999874 666667777 566 788888776 33 2322 34431 1221 11111111113589888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
- ..+ . ...+....+.|++||.++
T Consensus 253 d-~~g-------~-~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 253 D-TVS-------A-VHALGPLLGLLKVNGKLI 275 (360)
T ss_pred E-CCC-------C-HHHHHHHHHHhcCCcEEE
Confidence 3 221 1 224555668899999987
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.41 E-value=0.67 Score=45.74 Aligned_cols=104 Identities=17% Similarity=0.077 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-------cCCCCceeE
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-------ELPVTKVDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~D~ 192 (379)
.+..+|-+|-|.|.+...+-. .+..++++|++.+ |++.|++++.-..- ++..++-.|..+. ...+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 355789999999999888766 5667999999999 99999988743221 1223333332221 113467999
Q ss_pred EEEecCc---cccCC---hhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMG---YFLLF---ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~---~~l~~---~~~~~~~l~~~~~~LkpgG~li 226 (379)
+..+.=+ +++.- .-..+.++..+...|.|-|.++
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~ 413 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFI 413 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEE
Confidence 9976311 11110 0112577888889999999987
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.34 E-value=3.1 Score=38.61 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=56.2
Q ss_pred CCCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------C
Q 016992 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (379)
...|..||-=|.|.| .++..+|+.|+ +++..|++. -.....+.+++.| ++....+|+.+.. -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 356889999999998 56777888887 999999998 6666666666665 5788888887643 1
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
+-+.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 236789999863
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.09 E-value=0.97 Score=43.59 Aligned_cols=93 Identities=25% Similarity=0.312 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee----cc-CCCCc
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (379)
....++.+||-.|+|. |.++..+|+ .|...|+++|.++ ..+.+++ .|.. .++..+-.+ +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHhCCC
Confidence 3456788999998754 566666777 5877899999998 7776654 2321 222211111 10 11256
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+-. .+. ...+....+.|+++|.++
T Consensus 255 ~d~vld~-~g~--------~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 255 VDYALDT-TGV--------PAVIEQAVDALAPRGTLA 282 (365)
T ss_pred CcEEEEC-CCC--------cHHHHHHHHHhccCCEEE
Confidence 8988842 111 123556668889999987
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=86.05 E-value=7.2 Score=34.27 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH---H-H---------------HHHHHHHHHHcCCCCcEEEEEcce
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS---Q-M---------------ANMAKQIVEANGFSNVITVLKGKI 180 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s---~-~---------------~~~a~~~~~~~~~~~~i~~~~~d~ 180 (379)
...+|+-+|||. | ..+..+++.|.++++.+|.+ . . .+.+++.+.+..-.-+++.+..++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i 99 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI 99 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence 456899999985 3 56777788898899999987 2 1 122333333322212344444443
Q ss_pred eeccCC--CCceeEEEEecCccccCChhhHHHHHHHHHhcccC
Q 016992 181 EEIELP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (379)
Q Consensus 181 ~~~~~~--~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (379)
..-.+. ...+|+|+.. + .+......+++.+.+..+.
T Consensus 100 ~~~~~~~~~~~~DlVi~a-~----Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 100 TEENIDKFFKDADIVCEA-F----DNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred CHhHHHHHhcCCCEEEEC-C----CCHHHHHHHHHHHHHHcCC
Confidence 321111 2468999853 2 2223344556666666554
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.82 E-value=4.1 Score=37.90 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=57.2
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (379)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.+... + + ..++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899985 245555666665 899999999 888776543221 1 0 0112222 122211
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
-...|+|+.... ........++..+.+.++|+..+...+.+
T Consensus 79 --~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 --VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 145799985432 11233456677788888888766544433
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=85.79 E-value=4.4 Score=31.72 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=50.0
Q ss_pred CCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEecCcccc
Q 016992 131 AGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 202 (379)
Q Consensus 131 cG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l 202 (379)
||.|.++..+++. +...|+.+|.++ .++.+++. .+.++.+|..+.. ..-.++|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC----
Confidence 4556677776662 334899999999 77766542 2679999988754 23467898886431
Q ss_pred CChhhHHHHHHHHHhcccCCEEEE
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.......+....+-+.|...++
T Consensus 72 --~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 72 --DDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp --SHHHHHHHHHHHHHHTTTSEEE
T ss_pred --CHHHHHHHHHHHHHHCCCCeEE
Confidence 1222333334446667776665
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=2.2 Score=40.90 Aligned_cols=75 Identities=28% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
.+.+||-+|||. | .++..+++.|.++++.+|.+. .++.|++.+.+..-.-+|+.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999985 3 556677788989999999752 3455556666544323355565
Q ss_pred cceeeccCC--CCceeEEEEe
Q 016992 178 GKIEEIELP--VTKVDIIISE 196 (379)
Q Consensus 178 ~d~~~~~~~--~~~~D~Iv~~ 196 (379)
.++....+. ...+|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEc
Confidence 554321111 2568999864
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.61 E-value=6.7 Score=36.55 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=56.7
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc----------CC---------CCcEEEEEccee
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN----------GF---------SNVITVLKGKIE 181 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 181 (379)
++|.-||+|. +.++..++..|. +|+.+|.++ .++.+++.+... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 245556666776 899999999 888766544331 11 0112221 1221
Q ss_pred eccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. ....|+|+.... ........++..+.+.++|+..++
T Consensus 82 ~----~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 145798885432 222345677888888888888766
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.43 E-value=8.9 Score=35.49 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=59.2
Q ss_pred EEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHH-------HHcC-CC--------CcEEEEEcceeeccC
Q 016992 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIV-------EANG-FS--------NVITVLKGKIEEIEL 185 (379)
Q Consensus 125 ~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~-------~~~~-~~--------~~i~~~~~d~~~~~~ 185 (379)
+|--||+|. +.++..+++.|. +|+++|.++ .++.+++.+ .+.| +. .++++. .|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 578889985 456666677776 899999999 886655332 2222 11 123322 23222
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
....|+|+-.. .........++..+.+.++|+..+...+..
T Consensus 80 -~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 -LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred -hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 15679988532 111233458888898999999887654444
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.37 E-value=5.6 Score=37.00 Aligned_cols=94 Identities=21% Similarity=0.142 Sum_probs=56.8
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--------CCC---------CcEEEEEcceeec
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 183 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~ 183 (379)
.+|.-||+|.- .++..+++.|. +|+.+|.++ .++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 46888999863 44555566665 899999999 888876654211 110 223322 232221
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
....|+|+.... ........++..+...++++..+.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 146799986432 122345677888888888777664
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=85.35 E-value=8.1 Score=30.56 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=57.7
Q ss_pred CEEEEEcCCCc-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G-~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~ 201 (379)
.+|.++|.|-= ..+..+++.|. .|+++|+++. ++ + ..++++..|+.+-... -+..|+|.|-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYSi----- 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA---P--EGLRFVVDDITNPNISIYEGADLIYSI----- 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC---c--ccceEEEccCCCccHHHhhCccceeec-----
Confidence 38999998863 44666777785 9999999872 11 1 2378999998876543 3567999873
Q ss_pred cCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.-.+.+...+-.+.+.++-.-.+.|-
T Consensus 78 -RpppEl~~~ildva~aVga~l~I~pL 103 (129)
T COG1255 78 -RPPPELQSAILDVAKAVGAPLYIKPL 103 (129)
T ss_pred -CCCHHHHHHHHHHHHhhCCCEEEEec
Confidence 22255555555666666665556543
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=85.33 E-value=3.8 Score=38.40 Aligned_cols=95 Identities=23% Similarity=0.164 Sum_probs=56.8
Q ss_pred ccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCce
Q 016992 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (379)
.....+|.+||-.|+ |.|..++.+|+ .|+ +|++++.++ ..+.+++ .|...-+.....+..+ + ......+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCc
Confidence 345678899999985 34667777777 566 799999888 7777654 3442111111111111 1 0112568
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. .+ . ..+....+.|+++|.++
T Consensus 213 d~vld~-~g-------~--~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 213 DCYFDN-VG-------G--EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred EEEEEC-CC-------H--HHHHHHHHhhccCCEEE
Confidence 988842 21 1 33456678899999987
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=85.25 E-value=5.5 Score=37.74 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceee-c-cCCCCc
Q 016992 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 189 (379)
.....+|.+||-.|+ |.|..+..+|+ .|+ +|++++.++ ..+.+++. .|....+..... +..+ + ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 345678999999997 34666777777 576 788888877 76666542 343211111111 1111 0 011256
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+- .++ . ..+....+.|+++|.++
T Consensus 222 vd~v~d-~~g-------~--~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 222 IDIYFD-NVG-------G--KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred cEEEEE-CCC-------H--HHHHHHHHHhccCcEEE
Confidence 899884 221 1 33556678899999987
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.17 E-value=9.5 Score=35.52 Aligned_cols=98 Identities=20% Similarity=0.316 Sum_probs=61.5
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CCC---------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GFS---------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~~~---------~~i~~~~~d~~~~~ 184 (379)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+++.+.+. |.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 3788999996 355666677776 999999999 888876654321 110 12222 2233222
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcc-cCCEEEEecCCc
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLPDKAS 231 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~~~~ 231 (379)
...|+|+-.. .........++..+.+.+ +|+..+.-++.+
T Consensus 83 ---~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ---ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ---CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5679988543 333355567788888888 788777644433
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=5.2 Score=35.51 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH-------------------HHHHHHHHHHHHcCCCCcEEEEEcce
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------QMANMAKQIVEANGFSNVITVLKGKI 180 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (379)
...+|+-+|||. | .++..+++.|.++++.+|.+ ..++.+.+++.+..-.-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 456899999984 4 56777788899999999987 13445555565543323354454433
Q ss_pred eeccCC--CCceeEEEE
Q 016992 181 EEIELP--VTKVDIIIS 195 (379)
Q Consensus 181 ~~~~~~--~~~~D~Iv~ 195 (379)
...... -..+|+|+.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 321110 246899985
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=84.93 E-value=4.3 Score=43.00 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=66.8
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (379)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++... | + -.+|++.. |...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CHHH--
Confidence 4799999997 366666777776 999999999 888776665421 1 1 02233321 2211
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
-...|+||=.. .........++.++.++++|+.+|.-++.++-+
T Consensus 390 --~~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i 433 (714)
T TIGR02437 390 --FDNVDIVVEAV----VENPKVKAAVLAEVEQHVREDAILASNTSTISI 433 (714)
T ss_pred --hcCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 25689888432 333456679999999999999888755554433
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=84.91 E-value=4 Score=38.72 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=55.3
Q ss_pred CCCCC--CEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCce
Q 016992 119 FLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (379)
Q Consensus 119 ~~~~~--~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (379)
...++ .+||-.|+ |.|..+..+|+ .|+.+|++++.++ ..+.+++. .|....+.....+..+ + .+....+
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 34555 89999986 35677777777 5766899999887 76666542 3432111111111111 0 0112569
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. ++ . ..+....+.|+++|.++
T Consensus 226 d~vid~-~g-------~--~~~~~~~~~l~~~G~iv 251 (345)
T cd08293 226 DVYFDN-VG-------G--EISDTVISQMNENSHII 251 (345)
T ss_pred eEEEEC-CC-------c--HHHHHHHHHhccCCEEE
Confidence 999842 21 1 12355668899999988
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=84.81 E-value=3.6 Score=43.80 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=67.3
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC--------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (379)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++... | +. .+|++.. |...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-DYSGF- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CHHHh-
Confidence 4799999997 356666777776 999999999 988876666432 1 11 2343331 22222
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
...|+||=. .........+++.++.++++|+.+|.-++.++-+
T Consensus 413 ---~~aDlViEA----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 455 (737)
T TIGR02441 413 ---KNADMVIEA----VFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI 455 (737)
T ss_pred ---ccCCeehhh----ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 567988732 2344466679999999999999988755554433
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=84.74 E-value=5.1 Score=42.53 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=66.8
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (379)
++|.-||+|+ ..++..+|..|. .|+.+|.++ .++.+.+.+... | + -.+|++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 4799999998 366667777876 999999999 888776655321 1 1 1234433 222222
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
...|+||=.. .........++..+.+.++|+.+|.-++.++-
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 391 ---ERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred ---cCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 5689888432 33335667999999999999988875555443
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=84.70 E-value=8.4 Score=36.83 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=52.9
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee----ec-c-CCCCce
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE----EI-E-LPVTKV 190 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~----~~-~-~~~~~~ 190 (379)
..++.+||-.|+|. |..+..+|+ .|.++|++++.++ ....++ ..|...-+.....+.. .+ . .....+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999998653 444455566 4766899999887 666554 3444211111111110 01 0 122468
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. .+. ...+....+.|+++|+++
T Consensus 251 d~vid~-~g~--------~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 251 DVVIEA-SGH--------PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred cEEEEC-CCC--------hHHHHHHHHHhccCCEEE
Confidence 988842 111 123455568899999987
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.35 E-value=6 Score=37.25 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
..++++|-.|++.|+ ++..+++.|+ +|+.+..+. ..+.+.+.+....-..++.++..|+.+.. ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 457899999887652 3333444565 898888877 55555444443221235888999987643 01
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+..|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 25689999864
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.24 E-value=11 Score=35.20 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=59.7
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CC-C--------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GF-S--------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~~ 184 (379)
.+|.-||+|.- .++..+++.|. .|+.+|.++ .++.+.+.+..+ +. + .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 46888999863 44555666665 899999998 877765443321 21 1 123332 233221
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
...|+|+...+ ........++..+...++|+..++-.+.++
T Consensus 82 ---~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 82 ---ADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred ---cCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 46798885321 122345677788888899998777444443
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=9.7 Score=35.35 Aligned_cols=74 Identities=30% Similarity=0.456 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C----
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (379)
.++++||-.|++.|+ ++..+++.|. +|+.++.+. ..+.....+...+ .++.++.+|+.+... .
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 457899999976642 3333444565 788887653 3333333344333 357888888866421 0
Q ss_pred -CCceeEEEEec
Q 016992 187 -VTKVDIIISEW 197 (379)
Q Consensus 187 -~~~~D~Iv~~~ 197 (379)
..++|+||...
T Consensus 121 ~~~~iD~lI~~A 132 (290)
T PRK06701 121 ELGRLDILVNNA 132 (290)
T ss_pred HcCCCCEEEECC
Confidence 14689998653
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.00 E-value=6.8 Score=37.26 Aligned_cols=95 Identities=26% Similarity=0.242 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEEEcCCC--chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCc
Q 016992 117 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~--G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (379)
.....+|.+||-.|+.. |.+++.+|+ +|+ .++++-.++ ..+.+++ .|-..-|.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 45567899999999655 578888888 576 555555555 4445443 444333444444332211 12246
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+.. ++ ...+......|+++|.++
T Consensus 212 vDvv~D~-vG---------~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 212 VDVVLDT-VG---------GDTFAASLAALAPGGRLV 238 (326)
T ss_pred ceEEEEC-CC---------HHHHHHHHHHhccCCEEE
Confidence 9999853 21 234444567889999987
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.94 E-value=12 Score=36.30 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=63.3
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCc-EEEEEcceeeccCCCCceeEEEEecCccccC
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (379)
.||-++-.-|.++..++..+...+ .|.--.-...++|++.||++.. ++++.. .+ +++ +.+|+|+.-++ -
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~P----K 116 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKVP----K 116 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEeC----C
Confidence 799999999999999997544222 2221134456888999998643 555432 22 234 56999997653 2
Q ss_pred ChhhHHHHHHHHHhcccCCEEEE
Q 016992 204 FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (379)
....+...+..+...|.||+.++
T Consensus 117 ~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 117 TLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEE
Confidence 33567788889999999999977
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=83.75 E-value=1.9 Score=40.81 Aligned_cols=96 Identities=26% Similarity=0.368 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c--cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~D 191 (379)
....++.+||..|+|. |..++.+|+ .|...|++++.++ ..+.+++ .|....+.....+..+ + ..+.+.+|
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 3456788999977652 556666677 4655889998877 7666654 2321111111111111 1 01235689
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++.. .+. ...+....+.|+++|.++
T Consensus 239 ~vld~-~g~--------~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 239 CVIEA-VGF--------EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred EEEEc-cCC--------HHHHHHHHHHhhcCCEEE
Confidence 88842 211 135566668889999987
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=13 Score=33.00 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-----C
Q 016992 122 KDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (379)
++++||-.|++. .++..+++ .|. +|++++.++ ....+.+..... .++.++.+|+.+.. + .
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 567999999864 44444443 466 899999887 665554444332 24788888887532 0 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|.++...
T Consensus 79 ~~~id~ii~~a 89 (238)
T PRK05786 79 LNAIDGLVVTV 89 (238)
T ss_pred hCCCCEEEEcC
Confidence 13568888654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.59 E-value=1.5 Score=42.55 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
++.+|+-+|+|. |..+...++ .|+ +|+++|.++ .++.+.... + ..+.....+..++...-..+|+||....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 456799999874 555555444 576 799999988 655543322 1 1122111111122111246899997421
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...- ..+.-+-....+.++||++++
T Consensus 240 ~~g~---~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 IPGA---KAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred cCCC---CCCcCcCHHHHhcCCCCCEEE
Confidence 1011 111112244446679998877
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.59 E-value=1.8 Score=41.23 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-cc--CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (379)
....++.+||-.|+|. |.++..+|+ .|..+|++++.++ ..+.+++ .|...-+.....+..+ +. .....+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4567888999998642 444555556 4766899999888 7777754 2432111111111110 10 1223589
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+-.. + . ...+....+.|+++|.++
T Consensus 244 ~vid~~-g-------~-~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 244 VSFDCA-G-------V-QATLDTAIDALRPRGTAV 269 (351)
T ss_pred EEEECC-C-------C-HHHHHHHHHhccCCCEEE
Confidence 998421 1 0 124556668899999987
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.40 E-value=5.2 Score=37.96 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=56.6
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc----eeec--cCCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK----IEEI--ELPV 187 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~~~ 187 (379)
.....++.+||-.|+|. |..+..+|+ .|...|++++.++ ..+.+++. +....+.....+ ...+ ....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 35567889999987754 556666666 5765589998887 77666542 332111111111 1111 1223
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+|+|+.. .+ . ...+....+.|+++|.++
T Consensus 233 ~~~d~vld~-~g------~--~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 233 KGPDVVIEC-TG------A--ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCEEEEC-CC------C--HHHHHHHHHHhhcCCEEE
Confidence 569999842 11 0 124566678899999987
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.33 E-value=10 Score=35.55 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=56.4
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----cCCCCc
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~ 189 (379)
.....++.+||.+|+|. |..+..+|+ .|...|++++.++ ..+.+++ .+.. .++..+-.+. ......
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCC
Confidence 34567888999998652 455555666 4665589999888 7776643 2332 2222221111 112356
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+++.. .+. ...+....+.|+++|.++
T Consensus 227 vd~v~~~-~~~--------~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 227 FDVVIEA-TGV--------PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred CcEEEEC-CCC--------hHHHHHHHHHHhcCCEEE
Confidence 8999853 110 234555668889999987
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=83.20 E-value=7.1 Score=41.40 Aligned_cols=100 Identities=17% Similarity=0.116 Sum_probs=66.2
Q ss_pred CEEEEEcCCC--chHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeec
Q 016992 124 KVVLDVGAGT--GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEI 183 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la-~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~ 183 (379)
++|.-||+|+ ..++..++ ..|. .|+.+|.++ .++.+.+++... + + ..+|++.. |...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-ChHH-
Confidence 5799999998 35666666 5675 999999999 888876655431 1 1 12344432 2221
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
-...|+|+=.. .........++..+.+.++|+.+|.-++.++-
T Consensus 387 ---~~~aDlViEav----~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 387 ---FKHADVVIEAV----FEDLALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred ---hccCCEEeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 15689888432 33445667999999999999988875554443
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=83.16 E-value=7.3 Score=33.77 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=49.7
Q ss_pred EEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHH------------HHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQI------------VEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 125 ~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
+|--+|.|- | .++..+|+.|. +|+|+|+++ .++..++- +++..-..++.+. .|..+. ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hhc
Confidence 566777775 3 34455566776 999999999 77765421 1111101233332 122221 134
Q ss_pred eeEEEEec-CccccC---ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEW-MGYFLL---FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~-~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.|+++... ....-. ....+..+++.+.+.|+++-.++.
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE
Confidence 67776532 111111 123467888889999999777663
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=82.92 E-value=7.2 Score=37.83 Aligned_cols=96 Identities=26% Similarity=0.258 Sum_probs=54.8
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---c----eeeccCCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---K----IEEIELPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d----~~~~~~~~ 187 (379)
....+|.+||-.|+|. |..++.+|+ .|..+|++++.++ ..+.+++ .|....+..... + +..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3567888998887653 444455566 5766899999887 6655554 344211111110 1 0111 123
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+|+|+.. . +.....+....+.|+++|.++
T Consensus 274 ~gvDvvld~-~-------g~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 274 WGADIQVEA-A-------GAPPATIPQMEKSIAINGKIV 304 (384)
T ss_pred CCCCEEEEC-C-------CCcHHHHHHHHHHHHcCCEEE
Confidence 468988842 2 111234556667889999987
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.61 E-value=3.9 Score=39.77 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=46.4
Q ss_pred CEEEEEcCCC-ch-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEEec
Q 016992 124 KVVLDVGAGT-GI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEW 197 (379)
Q Consensus 124 ~~VLDlGcG~-G~-~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~ 197 (379)
++||-||||. |. .+..+|+.+..+|+..|.+. .++.+..... .+++.++.|+.+.+-- -..+|+|++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4799999964 32 23334555667999999997 6666554332 2588999898876310 24569999865
Q ss_pred C
Q 016992 198 M 198 (379)
Q Consensus 198 ~ 198 (379)
.
T Consensus 77 p 77 (389)
T COG1748 77 P 77 (389)
T ss_pred C
Confidence 3
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.43 E-value=3.5 Score=39.75 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=57.0
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--cceee-c-cCCCCc
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-I-ELPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~~ 189 (379)
.....+|.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.... .+..+ + ....+.
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCC
Confidence 34567899999999864 566666777 5776899999998 8887754 34321111110 01101 1 011136
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
+|+|+-. .+ . ...+....+.+++| |.++
T Consensus 256 ~d~vid~-~G-------~-~~~~~~~~~~~~~~~G~~v 284 (368)
T TIGR02818 256 VDYSFEC-IG-------N-VNVMRAALECCHKGWGESI 284 (368)
T ss_pred CCEEEEC-CC-------C-HHHHHHHHHHhhcCCCeEE
Confidence 8988842 21 1 23445556778886 8876
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.34 E-value=4.3 Score=39.49 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=33.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIV 164 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~ 164 (379)
.+.+.++.+||-|.+|.. -++.+...++++|++||+|+ .+...+=+.
T Consensus 30 aL~i~~~d~vl~ItSaG~-N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSAGC-NALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HhCCCCCCeEEEEccCCc-hHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 356789999999966544 44444555567999999999 766654433
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=82.19 E-value=13 Score=33.96 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=51.9
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcCCC--c-hH-HHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 107 TKSYQNVIYQ-NKFLFKDKVVLDVGAGT--G-IL-SLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 107 ~~~~~~~i~~-~~~~~~~~~VLDlGcG~--G-~~-~~~la~-~g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
...+.+.|.. .+.....++||-+|+|+ | .- +..+.+ .+ ...++-.|+.+.+ ++--..+.+|
T Consensus 45 YtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v------------SDa~~~~~~D 112 (299)
T PF06460_consen 45 YTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV------------SDADQSIVGD 112 (299)
T ss_dssp HHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-
T ss_pred HHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc------------cccCCceecc
Confidence 3344444433 24456788999999997 3 12 233334 32 2366677775511 1223456788
Q ss_pred eeeccCCCCceeEEEEecCc--------cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 180 IEEIELPVTKVDIIISEWMG--------YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~--------~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...+..+ .++|+|+|++-+ .-...++....+..-+...|+-||.+.
T Consensus 113 c~t~~~~-~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 113 CRTYMPP-DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp GGGEEES-S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCCC-CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 8887766 899999998631 011223344556666778899999886
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.94 E-value=1.9 Score=43.80 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cCC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceee----cc----CCCCc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE----IE----LPVTK 189 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g~-~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~----~~~~~ 189 (379)
+.++..||||||.+|.+...+++ .|. .-|+|||+-++ ..+++.++ ++.|++. .+ +..-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----------kp~~~c~t-~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----------KPIPNCDT-LVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----------ccCCccch-hhhhhhHHHHHHHHHHHHHhCC
Confidence 46788999999999999999988 453 57999999761 12222222 2234332 11 12356
Q ss_pred eeEEEEecCccccCC---hhhH-----HHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLF---ENML-----NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~---~~~~-----~~~l~~~~~~LkpgG~li 226 (379)
.|+|+++........ .... -..++.....|..||.++
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 799998754332211 1111 133444567888999876
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=81.91 E-value=9.4 Score=34.79 Aligned_cols=92 Identities=25% Similarity=0.267 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....++.+||-.|+|. |..+..+|+ .|..+|++++.++ ..+.+++. |..+.+..... .. .....+|+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---DE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---hh-hcCCCCCEEE
Confidence 4567888999998764 556666666 4764599999888 77766643 31111111110 11 1235689888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
... + . ...+....+.|+++|.++
T Consensus 165 ~~~-~----~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EAS-G----S----PSALETALRLLRDRGRVV 187 (277)
T ss_pred Ecc-C----C----hHHHHHHHHHhcCCcEEE
Confidence 421 1 0 124555667889999987
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.82 E-value=3.2 Score=39.98 Aligned_cols=95 Identities=22% Similarity=0.228 Sum_probs=55.4
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ce----eeccCCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 187 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~----~~~~~~~ 187 (379)
.....++.+||-.|+|. |..+..+|+ .|+..|++++.++ ..+.+++ .|....+..... +. ..+ ..
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHH-hC-
Confidence 34567888999988753 455555666 5776799999877 7777643 333211211111 11 111 12
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhccc-CCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li 226 (379)
+.+|+|+.. .+ . ...+....+.|+ ++|.++
T Consensus 252 ~~~d~vid~-~g-------~-~~~~~~~~~~l~~~~G~~v 282 (365)
T cd05279 252 GGVDYAFEV-IG-------S-ADTLKQALDATRLGGGTSV 282 (365)
T ss_pred CCCcEEEEC-CC-------C-HHHHHHHHHHhccCCCEEE
Confidence 568999842 21 1 234445567788 999987
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=81.74 E-value=6.8 Score=35.11 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEe-------------------cHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVE-------------------CSQ-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD-------------------~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
...+|+-+|||. | ..+..+++.|.++++.+| +-. .++.+.+++.+..-.-+|+.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 456899999984 3 556677788999998884 334 556666666654422235555544
Q ss_pred eeeccCC--CCceeEEEEe
Q 016992 180 IEEIELP--VTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~~ 196 (379)
+...... ...+|+||+.
T Consensus 100 i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 100 LDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eCHHHHHHHHhCCCEEEEc
Confidence 4221110 2468999964
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.40 E-value=8.5 Score=36.93 Aligned_cols=92 Identities=21% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+|.+||-.|+|. |.++..+|+ .|+ +|++++.++ ....+.+ ..|.. ..+...+...+......+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALE---HLGAD--DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH---hcCCc--EEecCCChHHHHHhcCCCcEEEEC
Confidence 35788999887754 566666777 466 688887766 5444322 34432 111111111111011358888742
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+ . ...+....+.|+++|.++
T Consensus 252 -~g----~----~~~~~~~~~~l~~~G~iv 272 (357)
T PLN02514 252 -VP----V----FHPLEPYLSLLKLDGKLI 272 (357)
T ss_pred -CC----c----hHHHHHHHHHhccCCEEE
Confidence 21 1 134455567899999987
|
|
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.37 E-value=14 Score=35.36 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=53.9
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec------cCCCC
Q 016992 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI------ELPVT 188 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 188 (379)
....++.+||-.|+| .|..+..+++ .|...|++++.++ ..+.+++ .+.. .++..+-..+ ..+..
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCC
Confidence 344678888877654 2455555566 4765699998887 7666643 2331 2222211111 11235
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+|+|+... + . . ..+....+.|+++|.++
T Consensus 256 ~~d~vld~v-g----~-~---~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 256 GVDVVVEAL-G----K-P---ETFKLALDVVRDGGRAV 284 (367)
T ss_pred CCCEEEEeC-C----C-H---HHHHHHHHHHhcCCEEE
Confidence 699998532 1 1 1 24556678899999987
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=81.13 E-value=9.5 Score=35.75 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..+++|+-+|+|. |......++ .|+ +|+.+|.++ ..+.++ ..|. +++. ..++...-..+|+||...
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~----~~G~----~~~~--~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARIT----EMGL----SPFH--LSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH----HcCC----eeec--HHHHHHHhCCCCEEEECC
Confidence 4689999999975 322222233 576 999999997 654443 2332 2221 112211125689999742
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. . ..+-......++||+.++
T Consensus 219 p-~--------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 219 P-A--------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred C-h--------hhhhHHHHHcCCCCcEEE
Confidence 1 1 112344556789988877
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.13 E-value=16 Score=31.86 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~----g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
..-.|.+.|-+ .+...|+++|.--|+.+++.|.. | ..+|+++|++- -++-+... . .+|.+++++
T Consensus 57 D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egs 126 (237)
T COG3510 57 DMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGS 126 (237)
T ss_pred HHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCC
Confidence 33345444443 45679999999999888887762 4 25999999987 44333221 2 469999999
Q ss_pred eeeccC-------CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 180 IEEIEL-------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 180 ~~~~~~-------~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
..+... ..+.--+.++. ++ -++....-..++...++|.-|-+++...
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvil--Ds-dHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVIL--DS-DHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEe--cC-CchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 877542 11222333332 11 2222444567778889999998887543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.90 E-value=7.1 Score=36.15 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=49.2
Q ss_pred EEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 125 ~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
+|.-||+|. |.++..+++.|. +|+++|.++ .++.+.+ .|. +.....+.. . ....|+|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~~---~-~~~aDlVilavp--- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDLS---L-LKDCDLVILALP--- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCHh---H-hcCCCEEEEcCC---
Confidence 567788875 455666666665 899999998 7766643 232 211111211 1 146799986432
Q ss_pred cCChhhHHHHHHHHHhcccCCEEE
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
......++..+...++++..+
T Consensus 67 ---~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 ---IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHHHhCCCCcEE
Confidence 133456677777777776544
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.75 E-value=12 Score=35.46 Aligned_cols=91 Identities=25% Similarity=0.328 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee----cc-CCCCcee
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTKVD 191 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~~D 191 (379)
..++.+||-.|+|. |..+..+|+ .|++.|++++.++ ..+.+++ .|.. .++...-.. +. ...+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 34788899987653 555556666 5777899999888 7766643 3431 222211111 10 1113689
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++.. .+ . ...+....+.|+++|.++
T Consensus 246 ~vid~-~g-------~-~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 246 AVIDF-VN-------N-SATASLAFDILAKGGKLV 271 (350)
T ss_pred EEEEC-CC-------C-HHHHHHHHHHhhcCCeEE
Confidence 99842 21 0 234566678889999987
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=80.63 E-value=4.2 Score=32.80 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEe
Q 016992 122 KDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G-~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~ 196 (379)
...+|+++|-|.= ..+..+++.|. .|+++|+++. .+. . .+.++..|+.+-.+. -...|+|.|-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~----g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-E----GVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-c----CcceeeecccCCCHHHhcCCcEEEEe
Confidence 3449999999974 55666777885 9999999872 111 2 366888888764432 2578999984
|
; PDB: 2K4M_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.20 E-value=5.4 Score=38.14 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=37.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc---------CCCEEEEEecHH-HHHHHHHHHHHc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECSQ-MANMAKQIVEAN 167 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~---------g~~~v~~vD~s~-~~~~a~~~~~~~ 167 (379)
....-.++++|+|+|.++..+.+. .+.++..||+|+ ....=+++++..
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344568999999999998877663 256999999999 777777777654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.09 E-value=13 Score=34.90 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=54.5
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-cCC----------CCcEEEEEcceeeccCCCCc
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-NGF----------SNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-~~~----------~~~i~~~~~d~~~~~~~~~~ 189 (379)
++|.-||+|.- .++..+++.|. +|+++|.++ .++.+++.+.. .+. ..++++. .|..+. ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH---hcc
Confidence 46888999863 44555556665 899999998 87777654321 110 0112221 122211 145
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
.|+|+.... ........++..+..+++++..++-.+
T Consensus 80 aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 80 ADLVIEAVP----EKLELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred CCEEEEecc----CcHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 799885432 111235667777777777766555333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 379 | ||||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 1e-102 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 1e-102 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 1e-102 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 1e-102 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 1e-85 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 2e-77 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 7e-77 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 4e-56 | ||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 7e-43 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 2e-41 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 2e-41 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 4e-41 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 5e-41 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 3e-40 | ||
| 4g56_A | 657 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 2e-05 | ||
| 4gqb_A | 637 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-04 |
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 657 | Back alignment and structure |
|
| >pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 637 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 379 | |||
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 1e-131 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-125 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 1e-122 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 1e-114 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-111 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-102 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 3e-47 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 3e-37 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 3e-24 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-17 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 6e-15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 2e-13 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 2e-12 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 5e-12 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 9e-12 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 4e-11 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 3e-10 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 7e-10 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 1e-09 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 9e-09 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 9e-09 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 1e-08 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 2e-08 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 6e-08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 7e-08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 9e-08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-07 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 1e-07 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 2e-07 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 3e-07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 3e-07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 3e-07 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 3e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 4e-07 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 5e-07 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 5e-07 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 6e-07 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 8e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 8e-07 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 8e-07 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 9e-07 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 1e-06 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 1e-06 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 1e-06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 2e-06 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 2e-06 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 2e-06 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 2e-06 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 3e-06 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 3e-06 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 4e-06 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 4e-06 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 4e-06 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 4e-06 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 5e-06 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 5e-06 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 5e-06 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 7e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 7e-06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 7e-06 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 7e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 8e-06 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 9e-06 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 1e-05 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 1e-05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 1e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 1e-05 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 1e-05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 2e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-05 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 2e-05 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 2e-05 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 2e-05 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 3e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 3e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 3e-05 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 5e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 5e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 5e-05 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 6e-05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 7e-05 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 1e-04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 1e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 2e-04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 2e-04 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 2e-04 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 2e-04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 2e-04 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 2e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 3e-04 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 3e-04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 3e-04 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 4e-04 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 4e-04 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 5e-04 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 5e-04 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 7e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 7e-04 |
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 379 bits (975), Expect = e-131
Identities = 181/337 (53%), Positives = 232/337 (68%), Gaps = 26/337 (7%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
A+ S +D TS DYYFDSY+HFGIHEE+LKD VRT +Y+N ++ N+ LFKDKVVLD
Sbjct: 13 QAESSEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLD 72
Query: 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188
VG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+ELPV
Sbjct: 73 VGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE 132
Query: 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 248
KVDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI
Sbjct: 133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIH 192
Query: 249 FWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------ 302
+W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT
Sbjct: 193 WWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQ 252
Query: 303 --------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGS 342
CHK GFST P+S THWKQTV Y+ED LT+ GE I G+
Sbjct: 253 VKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGT 312
Query: 343 LTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
+ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 313 IGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 362 bits (929), Expect = e-125
Identities = 154/327 (47%), Positives = 207/327 (63%), Gaps = 33/327 (10%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
DYYFDSY H+GIHEEML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
A HV V+ S + MAK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQ 264
E+M++TVLYARD +LV+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL 180
Query: 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------------- 302
+ EP+VDTV++N + T L D++ + D +F
Sbjct: 181 VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240
Query: 303 ------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 356
+ + FSTGP + THWKQT+ Y D L G+ I G L +PN+KN RD++
Sbjct: 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLN 300
Query: 357 IMLKYSLQ-----GRHSAISRIQYYKM 378
I + Y + G + Y M
Sbjct: 301 IKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 355 bits (912), Expect = e-122
Identities = 141/311 (45%), Positives = 191/311 (61%), Gaps = 27/311 (8%)
Query: 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
YF SY H+GIHEEMLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AK
Sbjct: 25 EDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAK 84
Query: 143 AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
AGA V V+ S++ A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFL
Sbjct: 85 AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 144
Query: 203 LFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIK 262
LFE+ML++VLYA++K+L G V PD ++ L A+ D D+I FW++VYGF MSC+K
Sbjct: 145 LFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMK 204
Query: 263 KQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT-------------------- 302
K + E +V+ +D +++ +K +D D F+
Sbjct: 205 KAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYF 264
Query: 303 -------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDV 355
CH + FSTGP+S THWKQTV LE ++ GEA+ G +TV NKK+PR +
Sbjct: 265 DIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSL 324
Query: 356 DIMLKYSLQGR 366
+ L + +
Sbjct: 325 TVTLTLNNSTQ 335
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 335 bits (859), Expect = e-114
Identities = 108/345 (31%), Positives = 167/345 (48%), Gaps = 42/345 (12%)
Query: 73 SMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G
Sbjct: 1 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCG 60
Query: 133 TGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDI
Sbjct: 61 SGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDI 119
Query: 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD---KIEF 249
IISE MGY L E ML + L+A+ K+L G + P ++L D + + K F
Sbjct: 120 IISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANF 178
Query: 250 W--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT- 302
W + +G D+S ++ A+ E P+VDT D ++ T++ + GD
Sbjct: 179 WYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIE 237
Query: 303 --------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEG 336
+ ST P THW Q + L G
Sbjct: 238 IPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAG 297
Query: 337 EAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAIS---RIQYYKM 378
+ +SG+ + NK+ D+ I+ + G S+ + +++
Sbjct: 298 DTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 342
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 332 bits (851), Expect = e-111
Identities = 108/349 (30%), Positives = 168/349 (48%), Gaps = 42/349 (12%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
+ S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLD
Sbjct: 105 TLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLD 164
Query: 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188
VG G+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP
Sbjct: 165 VGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-E 223
Query: 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD--- 245
+VDIIISE MGY L E ML + L+A+ K+L G + P ++L D + +
Sbjct: 224 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFT 282
Query: 246 KIEFW--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
K FW + +G D+S ++ A+ E P+VDT D ++ T++ + GD
Sbjct: 283 KANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDL 341
Query: 300 SFT---------------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLT 332
+ ST P THW Q + L
Sbjct: 342 HRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLF 401
Query: 333 ICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAIS---RIQYYKM 378
G+ +SG+ + NK+ D+ I+ + G S+ + +++
Sbjct: 402 AKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 450
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 307 bits (786), Expect = e-102
Identities = 103/357 (28%), Positives = 169/357 (47%), Gaps = 56/357 (15%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
D + YF +YS ++ML D VR +Y N ++QNK F+ K VLDVG G+GIL+
Sbjct: 19 VDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA 78
Query: 138 LFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197
++ A+AGA VYAVE ++MA+ A+ +V+AN +++ V++G +E+I LP KVD+IISEW
Sbjct: 79 IWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW 137
Query: 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK------DDKIEFWN 251
MGYFLL E+M ++V+ ARD+WL G++ P A ++L I+ D + W+
Sbjct: 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWH 197
Query: 252 NV-------YGFDMSCIKKQAMME--------PLVDTVDQNQIVTNCQLLKTMDISKMGP 296
N YG DM + K E + + ++ QI+ ++K MD
Sbjct: 198 NFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASV 257
Query: 297 GDASFT---------------------------------CHKLMGFSTGPKS-RATHWKQ 322
+ + + +T P THW Q
Sbjct: 258 SEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQ 317
Query: 323 TVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
V + + + + EG+ ++ L ++ +K+N R ++I L ++
Sbjct: 318 QVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYF 374
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 170 bits (430), Expect = 3e-47
Identities = 45/320 (14%), Positives = 88/320 (27%), Gaps = 73/320 (22%)
Query: 96 IHEEMLKDVVRTKSYQNVIYQ-----NKFLFKDKVVLDVGAGTGILSLFCAKAGA----- 145
++ +D ++ Y + K V+ +G G G + K+
Sbjct: 378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNT 437
Query: 146 ---------AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT-----KVD 191
+Y VE + A + + + + +T+++ + + + D
Sbjct: 438 FRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPD 497
Query: 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED----AEYKDDKI 247
II+SE +G F E + L +L I +P K + Y+ I K I
Sbjct: 498 IIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSI 556
Query: 248 EFWNNVYGFDMSCIKKQAMMEPL------------------VDTVDQNQIVTNCQLLKTM 289
+ + + E V + + + T
Sbjct: 557 PYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTF 616
Query: 290 DISKMGPGDASF------------TCHKLMGF-----------STGPKSRATH---WKQT 323
+ G+ S P + W
Sbjct: 617 EHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTVMLSIEPSTHTPGMVSWFPA 676
Query: 324 VLYLEDVLTICEGEAISGSL 343
V+ L D L + EG+ IS +
Sbjct: 677 VIPLRDQLRVGEGDRISLKI 696
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-37
Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 11/192 (5%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
++KT D+ + F + E + + + L + ++ D+G GTG +
Sbjct: 3 NENKTIHDFELNLICDFFSNMERQGPGSPEVTLK-ALSFIDNLTEKSLIADIGCGTGGQT 61
Query: 138 LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
+ A V ++ ++ + +G N +T + G ++++ ++D+I SE
Sbjct: 62 MVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE 121
Query: 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGF 256
Y + FE LN K+L G + + S + E + +FW + Y
Sbjct: 122 GAIYNIGFERGLN----EWRKYLKKGGYLAVSECSWF-----TDERPAEINDFWMDAYPE 172
Query: 257 DMSCIKKQAMME 268
+ + A +
Sbjct: 173 IDTIPNQVAKIH 184
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 3e-24
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 17/192 (8%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
++F+ YS +E LK + ++ F K VLD+G G G ++ A+ G
Sbjct: 11 KHFFEQYSQMPRSKEGLKAAGEWHELKKMLP----DFNQKTVLDLGCGFGWHCIYAAEHG 66
Query: 145 AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
A V ++ S +M AK+ S V+ + IE+I + ++++S L
Sbjct: 67 AKKVLGIDLSERMLTEAKR----KTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA---LH 119
Query: 204 FENMLNTVLYARDKWLVDDG-IVLPDKASLYLTAIEDAEYKDD---KIEFWNNVYGFDMS 259
+ + + L G + + ++ Y D+ K+ + + Y F+ S
Sbjct: 120 YIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRY-FNES 178
Query: 260 CIKKQAMMEPLV 271
+ E +
Sbjct: 179 MRTSHFLGEDVQ 190
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 30/193 (15%), Positives = 69/193 (35%), Gaps = 13/193 (6%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVV-RTKSYQNVIYQNKFLFKDKVVLDVGAGTGIL 136
++ + D+ F + + + ++ + + L D + D+G GTG
Sbjct: 3 NNNTSIHDFDFSF--ICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQ 60
Query: 137 SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195
+LF A + ++ + + ++ + + G ++ + ++D+I S
Sbjct: 61 TLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS 120
Query: 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYG 255
E Y + FE +N K+L G + + + +E + +FW + Y
Sbjct: 121 EGAIYNIGFERGMNEWS----KYLKKGGFIA-----VSEASWFTSERPAEIEDFWMDAYP 171
Query: 256 FDMSCIKKQAMME 268
ME
Sbjct: 172 EISVIPTCIDKME 184
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 6e-15
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
F+ + ++LDVG+ L + + G A E + A + VEA+G I V
Sbjct: 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV 70
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+V +I MG L + + K + ++L
Sbjct: 71 RLANGLAAFEETDQVSVITIAGMGGRL----IARILEEGLGKLANVERLIL 117
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-13
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
++ K++ + D+G+ L F K A+ A E A++ V ++G + I V
Sbjct: 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
KG + +D I+ MG L + + K ++L
Sbjct: 77 RKGNGLAVIEKKDAIDTIVIAGMGGTL----IRTILEEGAAKLAGVTKLIL 123
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-12
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
++ K +LDVG+ L +F + G A E A + V +G ++ I V
Sbjct: 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV 76
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+D I MG L + + + DK +VL
Sbjct: 77 RLANGLSAFEEADNIDTITICGMGGRL----IADILNNDIDKLQHVKTLVL 123
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 5e-12
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 14/126 (11%)
Query: 80 DKTSADYY--FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
DK A I+ + ++++ +F +D+G+G G LS
Sbjct: 10 DKKGAKNMDEISKTLFAPIYPIIAENIIN-----------RFGITAGTCIDIGSGPGALS 58
Query: 138 LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
+ AK + A++ S M +A + + ++ I +++G + I + D+I+S
Sbjct: 59 IALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSR 118
Query: 197 WMGYFL 202
+F
Sbjct: 119 GSVFFW 124
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 9e-12
Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 11/183 (6%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
V+ G + F + +L R ++ + + L VV
Sbjct: 72 HRLVTHQPGSGALAPLERVF-----YERLPAVLATRERHGHFRRAL--QRHLRPGCVVAS 124
Query: 129 VGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185
V G L + + ++ + A ++ + + IT+ + +++
Sbjct: 125 VPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT 184
Query: 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245
D++ S + + + + + + L G ++ + D+ +
Sbjct: 185 REG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQ 243
Query: 246 KIE 248
I+
Sbjct: 244 AID 246
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI- 183
++D+ +G GI+ L + A + VE ++A+MAK+ V N + I +++ +++I
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 184 -ELPVTKVDIIIS 195
+P + DI+
Sbjct: 113 DLIPKERADIVTC 125
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + K V DVG G+GIL++ K GA V A + S + A++ NG ++
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115
Query: 177 KGKIEEIELPVTKVDIII 194
+ +++ K D+I+
Sbjct: 116 TSLLADVD---GKFDLIV 130
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 7e-10
Identities = 22/186 (11%), Positives = 62/186 (33%), Gaps = 12/186 (6%)
Query: 80 DKTSADYYFDSY-SHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSL 138
K + + +Y ++G +D R + + F+ + VLD+G G L+L
Sbjct: 10 KKQQRKFQYGNYCKYYGYRNPSCEDG-RLRVLK------PEWFRGRDVLDLGCNVGHLTL 62
Query: 139 FCA-KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
A K G + + ++ ++ + A+Q + + + + + + +
Sbjct: 63 SIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122
Query: 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT--AIEDAEYKDDKIEFWNNVY 254
+ + + D V P+ ++ + + + ++ V
Sbjct: 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVL 182
Query: 255 GFDMSC 260
++
Sbjct: 183 CLSLTK 188
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-09
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
++D+G G G + + GA++V ++ S+ M A+ G IT + +
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADL 98
Query: 181 EEIELPVTKVDIIIS 195
+++ LP D+ S
Sbjct: 99 DKLHLPQDSFDLAYS 113
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 9e-09
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-A 146
Y H E L+ + ++ + +++ + VL+ G G G ++ AK A
Sbjct: 3 LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA 62
Query: 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
+ +++ S A++ E NG NV L+ I + + D I ++ L
Sbjct: 63 EITSIDISPESLEKARENTEKNGIKNV-KFLQANIFSLPFEDSSFDHIFVCFVLEHL 118
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 9e-09
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
L KD VV+DVG G+G +++ AK VYA++ A + KQ + N ++KG
Sbjct: 33 LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNC-QIIKG 90
Query: 179 KIEEIELPVTKVDIII 194
+ E++ L + +
Sbjct: 91 RAEDV-LDKLEFNKAF 105
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 178
+ VLDVG G G + +K VYA++ +M N A + V G NV +
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLK-S 95
Query: 179 KIEEIELPVTKVDIIIS 195
+ +I LP VD I
Sbjct: 96 EENKIPLPDNTVDFIFM 112
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 23/180 (12%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
D + DV+ ++ F+ +L++G+ G + +
Sbjct: 9 DQEIKDTAGHKYAYNFDFDVMH----PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF 64
Query: 145 AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
+ VE + + A+ ++ IT + + E+ +LP + D I+ +
Sbjct: 65 -NDITCVEASEEAISHAQGRLKDG-----ITYIHSRFEDAQLP-RRYDNIVL-----THV 112
Query: 204 FE---NMLNTVLYARDKWLVDDGIVL---PDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
E + + + D WL + G + P+ ++ +
Sbjct: 113 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-08
Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 16/177 (9%)
Query: 89 DSYSHF-GIHEEMLKDVVRTKSYQNVI--YQNKFLFKDKVVLDVGAGTGILSLFCAKAGA 145
+ Y+ F I++++++ V K + + I + LD+ GTG L+
Sbjct: 1 NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF- 59
Query: 146 AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW--MGYFL 202
+ +AV+ SQ M + A+ + G + I + + K D+I Y +
Sbjct: 60 KNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLNIN-RKFDLITCCLDSTNYII 116
Query: 203 LFENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWNNVY 254
+++ L + G+ + K S L + D+ +W N +
Sbjct: 117 DSDDLKKYFKAVS-NHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQF 172
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-08
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
K V++D G G G + + +Y ++ + K+ ++ +
Sbjct: 17 KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKFDS---------VITLS 66
Query: 181 EEIELPVTKVDIIIS 195
+ E+P VD I+
Sbjct: 67 DPKEIPDNSVDFILF 81
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 9e-08
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKD-------VVRTKSYQNVIYQNKFLFKDKVVLDVG 130
A Y+ Y F ++ +K V K +++ + FK VV+D
Sbjct: 27 AAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAF 86
Query: 131 AGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189
G G ++ A G V A++ + +A+ E G ++ I + G + K
Sbjct: 87 CGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLK 144
Query: 190 VDIII 194
D++
Sbjct: 145 ADVVF 149
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-07
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 74 MIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGT 133
M E + Y + + E L+ ++ K++ K VLD+ G
Sbjct: 1 MGFKEYYRVFPTYTDINSQEYRSRIETLEPLLM-----------KYMKKRGKVLDLACGV 49
Query: 134 GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
G S G V V+ S M A++ ++ + + + G ++ D
Sbjct: 50 GGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFEDKTFDY 106
Query: 193 IIS 195
+I
Sbjct: 107 VIF 109
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-07
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL 176
N + V+D G G GIL+ GA V A + A I A + +
Sbjct: 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA-----IETAKRNCGGVNFM 100
Query: 177 KGKIEEIELPVTKVDIIIS 195
+ EI K D I
Sbjct: 101 VADVSEISG---KYDTWIM 116
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
LD GAG G ++ A +E + +M ++ V + +E
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLE--PVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 184 ELPVTKVDIIISEWMGYFL 202
LP D+I+ +W +L
Sbjct: 153 TLPPNTYDLIVIQWTAIYL 171
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 24/156 (15%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178
L + LD+GAG G + F + + + + ++ G ++ ITV G
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 179 KIEEIELPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDK 217
EI D I S+ G + + M +
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI 199
Query: 218 WLVDDGIVLPDKASL--YLTAIEDAEYKDDKIEFWN 251
+ D I L D SL Y + ++ +
Sbjct: 200 QPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-07
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 122 KDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECS-QMANMAKQIVEAN---GFSNVITVL 176
+ + D+GAG G + A + A V E S +MA A++ +E FS I VL
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95
Query: 177 KGKIEEIE-------LPVTKVDIIIS 195
+ + LP +I
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
K+ V +DVG GTG ++L A VYA++ + A + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89
Query: 179 KIEEIELPVTKVDIII 194
E + +DI +
Sbjct: 90 DAPEALCKIPDIDIAV 105
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 15/179 (8%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA 143
A+YY Y + D V I++ + + VLD+ GTGI +L A+
Sbjct: 9 AEYYDTIYRRRIERVKAEIDFVEE------IFKEDAKREVRRVLDLACGTGIPTLELAER 62
Query: 144 GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
G V ++ + M +A++ + I L+G + EI + D + +
Sbjct: 63 G-YEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118
Query: 203 LFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED----AEYKDDKIEFWNNVYGFD 257
E L + + L G+ + D + + E K ++ + +
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVE 177
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
DK VLD GAG + L Y +E S A+ N F + + KG I
Sbjct: 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDI 80
Query: 181 EEIELPVTKVDIIISEWMGYFLLFEN 206
++ + + S + + +
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKND 106
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNV-ITVLKGK 179
KD +LD+G G G++ + A + ++ A +AK+ ++ N N I V+
Sbjct: 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110
Query: 180 IEEIELPVTKVDIIIS 195
+ E + K + II+
Sbjct: 111 LYE-NVKDRKYNKIIT 125
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 5e-07
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181
K V+ D+GAGTG S+ A G VYAVE S M +Q A V G E
Sbjct: 34 KGSVIADIGAGTGGYSVALANQG-LFVYAVEPS--IVMRQQ---AVVHPQV-EWFTGYAE 86
Query: 182 EIELPVTKVDIIIS 195
+ LP VD +IS
Sbjct: 87 NLALPDKSVDGVIS 100
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-07
Identities = 36/191 (18%), Positives = 56/191 (29%), Gaps = 39/191 (20%)
Query: 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC 153
H L +++T + VLD+GAG G +L + V+
Sbjct: 3 HHHHHHSLGLMIKTAE----------CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDA 51
Query: 154 SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS---------------EW 197
++ M +A + G NV G E + P DII E
Sbjct: 52 TKEMVEVASSFAQEKGVENVRFQQ-GTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 110
Query: 198 M------GYFLLFENM-----LNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 246
G FLL ++ + L D V S + +
Sbjct: 111 ARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 170
Query: 247 IEFWNNVYGFD 257
I+ WN +D
Sbjct: 171 IQKWNLPIQYD 181
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 27/142 (19%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLDVG G G ++ A A V + S+ N A A G +N +T ++
Sbjct: 65 VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124
Query: 185 LPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDKWLVD-- 221
D + + G + + +L + K VD
Sbjct: 125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAF 184
Query: 222 -DGIVLPDKASL--YLTAIEDA 240
G + + Y + + A
Sbjct: 185 RAGGGVLSLGGIDEYESDVRQA 206
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 8e-07
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 78 EDDKTSADYYFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGI 135
+ SA+ +DS + F +EM R+ + +++ K+ VLDVG G G
Sbjct: 10 FNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIP---FFEQYVKKEAEVLDVGCGDGY 66
Query: 136 LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194
+ ++ G V+ S M K+ E ++ +KG + + + + I+
Sbjct: 67 GTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPD----LSFIKGDLSSLPFENEQFEAIM 121
Query: 195 SEWMGYFL 202
+ +
Sbjct: 122 AINSLEWT 129
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 8e-07
Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 30/168 (17%)
Query: 75 IDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTG 134
+ G D TS DYYF F E++K R + Y + + VLD+G G G
Sbjct: 3 LSGTDIHTS-DYYFLFEEKFRGSRELVKA--RLRRY------IPYFKGCRRVLDIGCGRG 53
Query: 135 ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVD 191
C + G V+ ++ M + V+K E LP +D
Sbjct: 54 EFLELCKEEG-IESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLD 103
Query: 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVL---PDKASLYL 234
++ + +F+ L L +L + ++ P+ SLY
Sbjct: 104 GVM---ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYS 148
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 9e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183
V L++G GTG ++L G A++ M + +Q + + V++ I
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK--VQVVQADARAI 98
Query: 184 ELPVTKVDIIIS 195
LP V +I
Sbjct: 99 PLPDESVHGVIV 110
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 178
+ V+D G G + F A V+ + + + + + +T++K
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 179 KIEEIELPV-TKVDIIIS 195
+ ++ + V ++
Sbjct: 82 GHQNMDKYIDCPVKAVMF 99
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 180
+ +V+D G G + F A + VYA + + A Q + G N +L G
Sbjct: 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80
Query: 181 EEIELPVTKVDIII 194
+ I
Sbjct: 81 NLDHYVREPIRAAI 94
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VL+ G GTG L+ AG VY +E S +M +AK+ + ++ +G E
Sbjct: 49 VLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKE-----FSITEGDFLSFE 102
Query: 185 LPVTKVDIIIS 195
+P T +D I+S
Sbjct: 103 VP-TSIDTIVS 112
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 32/150 (21%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 177
F VLD+ AG+G L++ G + VE ++ A I + N T+LK
Sbjct: 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKA--QAIIQDNIIMTKAENRFTLLK 87
Query: 178 GKIEE-IELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIV---- 225
+ E I+ + D++ FL + + A L + +V
Sbjct: 88 MEAERAIDCLTGRFDLV-------FLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCET 138
Query: 226 -----LPDKASLYLTAIEDAEYKDDKIEFW 250
LP + + L ++ Y K+ +
Sbjct: 139 DKTVLLPKEIA-TLGIWKEKIYGISKVTVY 167
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ KVV D+GAGTG+LS GA V VE + A ++ + + V G
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 180 IEEIELPVTKVDIIIS 195
+ E ++VDI+I
Sbjct: 106 VSEFN---SRVDIVIM 118
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
LD+G G G SL+ A G V A + + ++I N + + +
Sbjct: 36 TLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLT 93
Query: 185 LPVTKVDIIISEWMGYFL 202
+ D I+S + FL
Sbjct: 94 FD-RQYDFILSTVVLMFL 110
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ L VLD+G G+G+L++ K G V+ M A+ + NG L
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRP--RFL 172
Query: 177 KGKIEEIELPVTKVDIII 194
+G +E LP D+++
Sbjct: 173 EGSLEA-ALPFGPFDLLV 189
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 9/160 (5%)
Query: 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV 129
ADV + + D+Y + + + ++++D T + + + VL++
Sbjct: 34 ADVLLASVGERGVLCDFYDEGAAD--TYRDLIQDADGTSEARE--FATRTGPVSGPVLEL 89
Query: 130 GAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELP 186
AG G L+ G V A+E S + ++ + + T+++G + L
Sbjct: 90 AAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD 148
Query: 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ ++ L E + + + L G L
Sbjct: 149 -KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS-------- 170
++K VL+ + TG ++ G + V +V+ SQ A ++A+Q VE N
Sbjct: 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277
Query: 171 -NVITVLKGKIEEIELPVTKVDIII 194
+V +L+ + E K D+I+
Sbjct: 278 DDVFKLLRTYRDRGE----KFDVIV 298
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEA--NGFSNVITVL 176
+ K+++DVG G G +L A+ + + S M A+ I E + + N ++
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN-VSFK 94
Query: 177 KGKIEEIE------LPVTKVDIIIS 195
++ + + K+D+I +
Sbjct: 95 ISSSDDFKFLGADSVDKQKIDMITA 119
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI-EEI 183
V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+ E
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 186
Query: 184 ELPVTKVDIIIS 195
+ +++I+S
Sbjct: 187 KEKFASIEMILS 198
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-06
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 74 MIDGEDDKTSADYYFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGA 131
M Y + +H+ KD R + + + + K +LDV
Sbjct: 1 MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVR-RHSPKAASLLDVAC 59
Query: 132 GTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190
GTG+ A + V +E S M +A++ + G + + L +
Sbjct: 60 GTGMHLRHLADSF-GTVEGLELSADMLAIARRRNPD------AVLHHGDMRDFSLG-RRF 111
Query: 191 DIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228
+ + +G+ + + ++ DG+V+ +
Sbjct: 112 SAVTCMFSSIGHLAGQAELDAALERFA-AHVLPDGVVVVE 150
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-06
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 12/206 (5%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFC 140
++Y +S G + ++ N I + + VLD+G G G L
Sbjct: 24 REHY-NSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKY 82
Query: 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW- 197
+AG Y V+ ++ N A+ + + + D+I S++
Sbjct: 83 ERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142
Query: 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
Y L+ + L G + S + + + N+ Y +
Sbjct: 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL-----ERYKQGRMSNDFYKIE 197
Query: 258 MSCIKKQAMMEPLVDTVDQNQIVTNC 283
+ ++ M V NC
Sbjct: 198 LEKMEDVPMESVREYRFTLLDSVNNC 223
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 5e-06
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
S D + + K T + +V+ K + KV LD+G G G SL+ +
Sbjct: 82 SDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKV-LDLGCGQGRNSLYLSL 140
Query: 143 AGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201
G V + + ++ + + E + I+ I + D I+S + F
Sbjct: 141 LG-YDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQ-ENYDFIVSTVVFMF 196
Query: 202 L 202
L
Sbjct: 197 L 197
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175
++ +LD+GAGTG+LS F + A V+ S+ M +AK N +
Sbjct: 40 SVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKY 96
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
++ + + K D+++S + L E+ + L + GI +
Sbjct: 97 IEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSY-SILKESGIFI 145
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
L++G G + A + ++ + A Q +S++ + I +
Sbjct: 55 GLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQ--RTKRWSHI-SWAATDILQ-F 109
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL----PDKASLYLTAIEDA 240
D+I+ + Y+L + T + K L G ++ D + A
Sbjct: 110 STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGA 169
Query: 241 EY 242
E
Sbjct: 170 ET 171
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G+G+G + A+ ++ S AK+ E G S + +
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY- 98
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 226
+ K D+ + L GI+L
Sbjct: 99 VANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIML 137
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 6e-06
Identities = 59/399 (14%), Positives = 100/399 (25%), Gaps = 158/399 (39%)
Query: 72 VSMIDGEDDKTSADYYFDSYSHFGIHEEMLKD--------VVRTKSYQNVIYQNKFLFKD 123
+S I E + S Y + + D V R + Y + + L +
Sbjct: 95 MSPIKTEQRQPSMMT--RMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKL---RQALLEL 147
Query: 124 K----VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV--ITVLK 177
+ V++D G+G + A V C + ++ F + + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWV------ALDV----CL-----SYKVQCKMDF-KIFWLNL-- 189
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 237
E ++ ML +LY D + D +S I
Sbjct: 190 KNCNSPE------TVLE------------MLQKLLYQIDP----NWTSRSDHSSNIKLRI 227
Query: 238 EDAE-----------YK------DDKIEFWNN--VYGFDMSC-IKKQAMMEPLVDTVDQN 277
+ Y+ + N F++SC I L+ T +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSCKI--------LLTTRFKQ 276
Query: 278 QIVTNCQLLKTMDISKMGPGDASFTCHKLMGF-----------------STGP------- 313
VT+ T + + T ++ +T P
Sbjct: 277 --VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 314 ---KSRATHWKQTVLYLEDVLTICEGEAISGSLTV-APN--KKN-------PRDVDI--- 357
+ W D LT I SL V P +K P I
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 358 --------------------MLKYSLQGRHSAISRIQYY 376
+ KYSL + S I
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LDVG+GTG + A G + +E + ++ +A+Q + +T G I ++
Sbjct: 45 ILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPS------VTFHHGTITDLS 97
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ +++ W + L L A + D G +L
Sbjct: 98 DSPKRWAGLLA-WYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 30/136 (22%)
Query: 76 DGEDDKTSADYYFDSYSH----------FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKV 125
K + ++D + + ++ ++ + ++L
Sbjct: 9 HHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLE-----------EYLKNPCR 57
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G GTG SLF + G V V+ S+ M +A++ V V++ K E++
Sbjct: 58 VLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVARE-------KGVKNVVEAKAEDLP 109
Query: 185 LPVTKVDIIISEWMGY 200
P + +++
Sbjct: 110 FPSGAFEAVLALGDVL 125
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 7e-06
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVIT 174
L + +L +G G LS G +V +V+ S + + +
Sbjct: 35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSS--VVVAAMQACYAHVPQLR 92
Query: 175 VLKGKIEEIELPVTKVDIIIS 195
+ +++ P D+++
Sbjct: 93 WETMDVRKLDFPSASFDVVLE 113
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K++ VLDV TG ++ A AGA V ++ S A AK+ + NG + + +
Sbjct: 213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 272
Query: 177 KG 178
G
Sbjct: 273 VG 274
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+ K VLD+G +G L + G V +E + A AK+ + V+ G I
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKE--------KLDHVVLGDI 82
Query: 181 EEIELPVT--KVDIIIS----EWMGYFLLFENMLNTVLYARDKWLVDDGIVL---PDKAS 231
E +++P + D +I E + + V+ ++ +G++L P+ +
Sbjct: 83 ETMDMPYEEEQFDCVIFGDVLEHL------FD-PWAVIEKVKPYIKQNGVILASIPNVSH 135
Query: 232 L-YLTAIEDAEY 242
+ L + +
Sbjct: 136 ISVLAPLLAGNW 147
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 9e-06
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+V L++G G + A+ V A E + A++ +E N + + G
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114
Query: 180 IEEIELPVTKVDIIIS 195
I + + D+I S
Sbjct: 115 IIK-GVVEGTFDVIFS 129
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
K + D+G GTG +L A V V+ S+ M +A++ + +
Sbjct: 33 PGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQDM 88
Query: 181 EEIELPVTKVDIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDKASLY 233
E+ELP VD I + Y ++ T A + L D G +L P K
Sbjct: 89 RELELPEP-VDAITILCDSLNYLQTEADVKQTFDSAA-RLLTDGGKLLFDVHSPYKMETL 146
Query: 234 LTAIEDAEYKDDKIEFWNNVYGFD 257
A + + W G +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEE 170
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
++ VLDV G G ++ A V A + ++ + +A+ +E NG V V G
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-GDA 94
Query: 181 EEIELPVTKVDIIIS 195
E++ + I+
Sbjct: 95 EQMPFTDERFHIVTC 109
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 24/186 (12%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
+ AD Y Y G + + +LDV GTG
Sbjct: 5 EVDHADVYDLFYLGRGKDYAAEASDIAD-------LVRSRTPEASSLLDVACGTGTHLEH 57
Query: 140 CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW- 197
K +E S+ M A++ + T+ +G + + L K ++S +
Sbjct: 58 FTKEF-GDTAGLELSEDMLTHARKRLPD------ATLHQGDMRDFRLG-RKFSAVVSMFS 109
Query: 198 -MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWN 251
+GY E + V + L G+V+ + D +D +
Sbjct: 110 SVGYLKTTEELGAAVASFA-EHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARV 168
Query: 252 NVYGFD 257
+ +
Sbjct: 169 SHSVRE 174
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182
++D G G G L L + ++ + + A+++ + L+G E
Sbjct: 26 IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDATE 83
Query: 183 IELPVTKVDIIISEW 197
IEL K DI I
Sbjct: 84 IELN-DKYDIAICHA 97
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
L + + +LD+ +G G ++ AK +V + ++ A MA++ VE N V
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEV--A 344
Query: 179 KIEEIELPVTKVDIII 194
E+ + D +I
Sbjct: 345 SDREVSVK--GFDTVI 358
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 126 VLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 183
VLDVG G G+LS+ A+ + + + S A ++ + ANG + E+
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV-FSEV 258
Query: 184 ELPVTKVDIIIS 195
+ + D+IIS
Sbjct: 259 K---GRFDMIIS 267
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIE 184
+L + G G + F A G V AV+ S + AKQ+ + G IT ++ + + +
Sbjct: 33 ILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNLADFD 89
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYAR-DKWLVDDGIVL 226
+ + I+S F + L LY + + L G+ +
Sbjct: 90 IVADAWEGIVS----IFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS------ 170
K VL++ + T S+ A GA +V+ ++ + ++ EAN
Sbjct: 208 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 267
Query: 171 ---NVITVLKGKIEEIELPVTKVDIII 194
+V K DIII
Sbjct: 268 VVMDVFDYFKYARRHHL----TYDIII 290
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYA 150
+ L K V ++GAG G++S+ AGA V A
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA 107
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLK 177
+ + D+G G+G +++ ++ E S + G S+ I V +
Sbjct: 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ 82
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYA 214
G + D+I +G L +
Sbjct: 83 GAPRAFDDVPDNPDVIF---IGGGLTAPGVFAAAWKR 116
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 33/152 (21%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 177
F + LD+ +G+G L++ G +E + A K I + V K
Sbjct: 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAA--LKVIKENIAITKEPEKFEVRK 100
Query: 178 GK----IEEIELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 226
+E+ + D++ L + L + + L ++ +++
Sbjct: 101 MDANRALEQFYEEKLQFDLV-------LLDPPYAKQEIVSQLEKM--LERQLLTNEAVIV 151
Query: 227 --------PDKASLYLTAIEDAEYKDDKIEFW 250
+ L + Y ++ +
Sbjct: 152 CETDKTVKLPETIGTLKKTRETVYGITQVTIY 183
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
L ++ VLD+G+G G ++ + AH + ++ N+ E +N I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS--NIVNMANERVSGNNKIIFEAND 110
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 226
I E P D+I S +L ++ N + KWL G +L
Sbjct: 111 ILTKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTLL 156
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 24/119 (20%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL-----FKDKVVLDVGAGTGILSL 138
A + D+ H I + + L + + VLD+G G G L
Sbjct: 21 AQAWIDAVRHGAIE------------SRRQVTDQAILLAILGRQPERVLDLGCGEGWLLR 68
Query: 139 FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVDIIIS 195
A G V+ + + + A+ A G V ++ E ++PV D+I +
Sbjct: 69 ALADRG-IEAVGVDGDRTLVDAAR----AAGAGEVHLASYAQLAEAKVPVGKDYDLICA 122
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 5e-05
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 120 LFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK 177
+ + + +G G + + + V VE +A ++++++E G V V+
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVIT 178
Query: 178 GKIEEIELPVTKVDIII 194
G + + D+++
Sbjct: 179 GDET--VIDGLEFDVLM 193
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 71 DVSMIDGEDDKTSADYY---FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVL 127
+ M DD T +Y +Y+ L + L +L
Sbjct: 2 EPDMTQAFDDDT-LRFYRGNATAYAERQPRSATLTKFLG------------ELPAGAKIL 48
Query: 128 DVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162
++G G G + AG V A + S +A A +
Sbjct: 49 ELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASR 83
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD G G G + + +K G V + + + AKQ + G + +
Sbjct: 50 ILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPE------ARWVVGDLSVDQ 102
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ T D+I+S L E+ L + L DG +
Sbjct: 103 ISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 6e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 126 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G G G + + + G V ++E ++A A++ + G+ NVI ++
Sbjct: 81 VLEIGTGCGYHAAVTAEIVGEDG--LVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 126 VLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNV--ITVLKGKIE 181
++D+G G G++ L A V V+ S MA ++ VE N + +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285
Query: 182 EIELPVTKVDIIIS 195
+ + + ++
Sbjct: 286 S-GVEPFRFNAVLC 298
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 11/178 (6%)
Query: 54 AAPVDGTAIEDEAMCDADVSMIDGED--DKTSADY--YFDSYSHFGIHEEMLKDVVRTKS 109
++ + E + D + + Y H I + +
Sbjct: 11 SSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGH--ISSIDINSSRKF-- 66
Query: 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANG 168
Q + + LD GAG G ++ V V+ AK + G
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG 126
Query: 169 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+++ D+I +W+ L +++ + + L +GI++
Sbjct: 127 KRVR-NYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK-GSLRPNGIIV 182
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 126 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G GTG ++S + G V +VE ++ +AK+ VE G NVI V
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIENVIFVC 132
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF 169
VL+ G G G + A A + S ++ +A+
Sbjct: 52 VLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADV 95
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K + + VV+D+ AG G S+ A A +YA++ + A + K+ ++ N + I +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI--ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI 248
Query: 177 KG 178
Sbjct: 249 LS 250
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 124 KVVLDVGAGTGILS-LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN----VITVLK 177
+ V+D+G G G L + + + V+ S + +A++ ++ + +++
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90
Query: 178 GKIEEIELPVTKVDIIISEWM 198
G + + D +
Sbjct: 91 GALTYQDKRFHGYDAATVIEV 111
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 122 KDKVVLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G G+G IL+ HV +VE + A++ ++ NV T
Sbjct: 77 PQSRVLEIGTGSGYQTAILAHL-----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH 131
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 180
+ + VLD+GAG G L+L A+ G A V VE + ++ +EAN L +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKA--QALHSDV 289
Query: 181 EEIELPVTKVDIIIS 195
+E + DII++
Sbjct: 290 DEALTEEARFDIIVT 304
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+ VLD+ G G +L A AA V VE + +Q NG NV T +
Sbjct: 286 PEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNV-TFYHENL 343
Query: 181 EEI 183
EE
Sbjct: 344 EED 346
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 28/124 (22%)
Query: 78 EDDKTSADYYFDSYS-----HFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
+ F+ + F +H ++ K L + +++G G
Sbjct: 7 HHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAV---------KCLLPEGRGVEIGVG 57
Query: 133 TGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191
TG ++ VE S +MA +A++ + VLKG E + L D
Sbjct: 58 TGRFAVPLKI-----KIGVEPSERMAEIARK--------RGVFVLKGTAENLPLKDESFD 104
Query: 192 IIIS 195
+
Sbjct: 105 FALM 108
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 3e-04
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMANMAKQIVE-ANGFSNVITVL--K 177
+D +L +GA G A VYA+E + + +++++ N+I +L
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYA--PRIMRELLDACAERENIIPILGDA 131
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
K +E V KVD+I + N ++ +L G +
Sbjct: 132 NKPQEYANIVEKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-NGFSNV 172
Y+++F+ + V+D+ G GI + + +E + + A A+ +
Sbjct: 86 YKSRFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKD 144
Query: 173 ITVLKGKIEEI--ELPVTKVDIIISEWM 198
+ +L G +E + D I +
Sbjct: 145 VNILTGDFKEYLPLIKTFHPDYIYVDPA 172
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
F+ + LDV + G +L G V AV+ S A A++ NG NV +
Sbjct: 208 FRGERALDVFSYAGGFAL-HLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVL 262
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 40/158 (25%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
LD AG+G L A V +E V LK +
Sbjct: 52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD---------------KTVANQLKKNL 96
Query: 181 EEIELPVTKVDII---ISEWMGYF-------LLF------ENMLNTVLY--ARDKWLVDD 222
+ ++ + ++I +++ ++F N+ + + WL +
Sbjct: 97 QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPN 156
Query: 223 GIV-------LPDKASLYLTAIEDAEYKDDKIEFWNNV 253
++ P T +++ + N+
Sbjct: 157 ALIYVETEKDKPLITPENWTLLKEKTTGIVSYRLYQNL 194
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 178
+ +++ D+G G+G +S+ AG +E ++ ++ G S + ++G
Sbjct: 53 PRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111
Query: 179 KIEEI--ELP 186
+LP
Sbjct: 112 TAPAALADLP 121
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 5e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ +D+G G + + A E M N AK+ VE N S++I V+K
Sbjct: 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP 124
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFEN 206
+ + + + + Y N
Sbjct: 125 QKTLLMD----ALKEESEIIYDFCMCN 147
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 7e-04
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VL++ +GTG + + V A++ S +M A +G NV + + +
Sbjct: 50 VLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAG----RHGLDNV-EFRQQDLFDWT 103
Query: 185 LPVTKVDIIIS 195
P + D +
Sbjct: 104 -PDRQWDAVFF 113
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 7e-04
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 126 VLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEAN--------GFSNVIT 174
VLD+G GTG +K V V+ +A++ VE + SNV
Sbjct: 87 VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV-R 145
Query: 175 VLKGKIEEI------ELPVTKVDIIISEWMGYFL 202
LKG IE + +P + VDI+IS +
Sbjct: 146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS 179
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 379 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.7 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.69 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.68 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.68 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.67 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.67 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.66 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.66 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.65 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.65 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.65 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.65 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.65 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.65 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.64 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.64 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.63 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.63 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.63 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.63 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.63 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.62 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.62 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.62 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.62 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.62 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.62 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.61 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.61 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.61 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.61 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.61 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.61 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.61 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.61 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.6 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.6 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.6 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.6 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.6 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.6 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.6 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.59 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.59 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.59 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.59 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.59 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.59 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.59 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.58 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.58 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.58 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.58 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.58 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.58 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.58 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.58 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.57 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.57 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.56 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.56 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.56 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.56 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.56 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.55 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.55 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.55 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.55 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.55 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.55 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.55 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.55 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.54 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.54 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.54 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.54 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.54 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.54 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.54 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.54 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.53 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.53 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.53 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.53 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.53 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.53 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.53 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.52 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.52 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.52 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.52 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.52 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.52 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.52 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.52 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.51 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.51 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.51 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.51 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.5 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.5 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.5 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.5 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.5 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.5 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.49 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.49 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.49 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.49 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.49 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.49 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.49 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.49 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.49 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.49 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.48 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.48 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.48 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.48 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.47 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.47 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.47 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.47 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.47 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.47 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.46 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.46 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.46 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.46 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.46 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.46 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.46 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.45 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.45 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.45 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.45 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.45 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.45 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.44 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.44 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.44 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.43 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.43 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.43 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.43 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.42 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.42 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.42 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.42 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.42 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.42 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.42 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.41 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.41 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.41 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.41 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.4 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.4 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.4 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.39 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.39 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.39 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.39 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.39 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.39 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.39 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.38 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.38 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.38 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.38 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.37 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.37 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.36 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.36 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.36 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.36 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.36 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.35 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.35 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.35 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.35 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.35 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.34 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.34 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.34 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.34 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.34 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.33 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.33 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.33 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.29 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.29 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.29 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.29 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.28 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.28 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.28 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.28 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.27 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.27 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.27 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.27 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.27 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.26 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.25 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.25 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.25 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.23 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.22 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.22 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.21 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.21 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.2 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.19 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.19 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.19 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.17 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.17 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.14 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.14 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.13 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.13 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.11 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.1 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.1 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.09 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.08 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.08 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.07 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.05 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.05 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.04 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.02 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.01 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.01 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.97 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.95 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.92 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.88 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.87 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.86 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.86 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.81 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.8 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.78 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.71 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.64 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.64 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.64 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.58 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.58 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.47 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.43 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.37 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.36 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.31 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.3 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.27 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.19 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.16 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.15 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.07 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.03 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.89 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.77 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.75 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.42 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.39 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.39 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.32 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.27 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.25 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.05 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.92 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.77 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.61 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.32 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.21 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.18 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.13 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.11 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.06 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.06 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.94 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.85 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.84 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.74 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.74 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.72 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.71 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.66 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.64 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.61 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.45 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.44 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.4 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.4 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.34 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.33 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.28 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.19 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.15 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.01 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.0 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.98 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.85 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.84 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.81 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.77 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.62 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.58 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.58 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.56 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.51 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.46 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.45 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.4 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.35 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.33 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.25 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.15 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.14 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.13 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.05 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.94 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.83 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.59 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.53 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.53 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.51 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.46 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.36 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.28 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.26 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.22 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.96 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.83 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.73 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.68 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.62 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.6 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.14 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.12 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.98 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.97 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 91.82 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.58 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.54 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.38 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.3 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 91.29 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.14 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 91.12 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.03 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.89 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 90.82 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.69 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.54 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.46 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.44 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 90.2 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.13 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.12 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 89.95 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.81 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.76 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.62 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.56 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.5 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.37 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 89.24 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 89.23 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 88.95 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 88.75 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 88.75 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.54 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 88.22 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 87.98 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 87.85 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 87.84 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 87.72 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 87.48 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 87.38 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.21 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 87.11 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.1 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 86.94 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 86.83 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 86.54 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 86.45 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 85.74 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.52 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.52 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 85.36 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 84.94 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 84.84 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 84.7 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 84.69 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 84.56 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 84.49 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 84.41 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 84.3 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 84.27 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 84.17 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 84.02 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 83.75 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 83.56 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 83.43 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 83.28 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 83.17 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 83.1 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 82.56 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 82.37 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 82.35 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 82.21 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 82.04 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 81.87 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 81.53 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 81.29 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 80.93 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 80.88 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 80.87 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 80.75 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 80.73 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 80.61 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 80.52 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 80.12 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 80.08 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.03 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-55 Score=420.11 Aligned_cols=292 Identities=40% Similarity=0.745 Sum_probs=259.8
Q ss_pred cchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHH
Q 016992 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQ 162 (379)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~ 162 (379)
.+..||++|++++.|..||+|..|+.+|.++|.++....+|++|||||||+|++++++|++|+++|+|||.|+|++.|++
T Consensus 44 ~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~ 123 (376)
T 4hc4_A 44 RDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQARE 123 (376)
T ss_dssp -----CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHH
T ss_pred chhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHH
Confidence 44689999999999999999999999999999987777899999999999999999999999999999999888899999
Q ss_pred HHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccc
Q 016992 163 IVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242 (379)
Q Consensus 163 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~ 242 (379)
+++.||+.++|+++++|++++.++ ++||+|||+++++++.++.+++.++.++.++|||||.++|+.+++|++++++..+
T Consensus 124 ~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~~l 202 (376)
T 4hc4_A 124 VVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQML 202 (376)
T ss_dssp HHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHH
T ss_pred HHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccchh
Confidence 999999999999999999999888 8999999999999999999999999999999999999999999999999998544
Q ss_pred ccccccccccc---ccccchhhhhhhc------cCceEEeeCCCcccCCCeeeEeeeCCCCCCCC---ce----Ee----
Q 016992 243 KDDKIEFWNNV---YGFDMSCIKKQAM------MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGD---AS----FT---- 302 (379)
Q Consensus 243 ~~~~~~~w~~~---~g~~~~~~~~~~~------~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~---~~----f~---- 302 (379)
..+..+|.++ |||+|+.+..... .+|+++.+++..++++|+.+++|||.++..+. .. |+
T Consensus 203 -~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~f~~~~~ 281 (376)
T 4hc4_A 203 -EWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCY 281 (376)
T ss_dssp -HHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHHHHHCEEEEEEEECC
T ss_pred -hhhhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCCCccccccccceeEEEEEec
Confidence 3456788776 9999999876542 46888999999999999999999999876432 11 11
Q ss_pred --------------------cCCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEE
Q 016992 303 --------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYS 362 (379)
Q Consensus 303 --------------------~~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 362 (379)
++.++.|||+|..+.|||+|++|+|++|+.|++|++|++++++++++.++|+++|+++|+
T Consensus 282 ~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~~n~R~~~i~i~~~ 361 (376)
T 4hc4_A 282 GSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYK 361 (376)
T ss_dssp SSEEEEEEEEEEEEEECCCC--CCEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEEE
T ss_pred CCcEEEEEEEEEEEEecCCCCCCceEEeCCCCcCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCceeEEEEEEE
Confidence 235689999999999999999999999999999999999999999999999999999999
Q ss_pred EcceeeeeeceEEeeeC
Q 016992 363 LQGRHSAISRIQYYKMR 379 (379)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ 379 (379)
+.++..+ ++.|+|+
T Consensus 362 ~~~~~~~---~~~~~~~ 375 (376)
T 4hc4_A 362 VGDQEEK---TKDFAME 375 (376)
T ss_dssp ETTSCCE---EEEEEEC
T ss_pred eCCCCcc---eEEEeCC
Confidence 9987644 4889986
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=378.66 Aligned_cols=301 Identities=59% Similarity=1.014 Sum_probs=269.9
Q ss_pred CCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHH
Q 016992 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN 158 (379)
Q Consensus 79 ~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~ 158 (379)
+.+...+.||+.|+.+..+..|++|..|+..|.++|.......++.+|||||||+|.+++.+++.|+++|+|+|+|+|++
T Consensus 23 ~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~ 102 (349)
T 3q7e_A 23 EDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD 102 (349)
T ss_dssp --------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHH
T ss_pred cccchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHH
Confidence 33445578999999999999999999999999999987767788999999999999999999999888999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEee
Q 016992 159 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (379)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (379)
.|+++++.+++.++|+++++|+++++++.++||+|+++++++++.++..+..++.++.++|||||+++|..++++..++.
T Consensus 103 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~ 182 (349)
T 3q7e_A 103 YAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIE 182 (349)
T ss_dssp HHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeec
Confidence 99999999999888999999999998877899999999998989888999999999999999999999999999999999
Q ss_pred cccccccccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe----------------
Q 016992 239 DAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------- 302 (379)
Q Consensus 239 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~---------------- 302 (379)
...+......+|.+.+|++++.+.+....+|+++.+++..++++|+.+.++||.++..+++.|.
T Consensus 183 ~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~g~ 262 (349)
T 3q7e_A 183 DRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHAL 262 (349)
T ss_dssp CHHHHHHHTGGGGCBTTBCCGGGHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEE
T ss_pred ChhhhhhhhcccccccCcchHHHhHhhhcCcEEEEEChhhEecccEEEEEEEcccCchhhcceeeeEEEEEccCCEEEEE
Confidence 9888877888999999999999999999999999999999999999999999999887776432
Q ss_pred ----------cCCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceeeeeec
Q 016992 303 ----------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISR 372 (379)
Q Consensus 303 ----------~~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (379)
++.++.|||+|..+.|||+|++|+|++|+.|++|++|++++++++++.++|+++|+++|++.|+..++-+
T Consensus 263 ~~~Fd~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 342 (349)
T 3q7e_A 263 VAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSC 342 (349)
T ss_dssp EEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCSSCEEEEEEEEEECSSCEEEE
T ss_pred EEEEEEEecCCCCccEEECCCCcCCCcceeEEEEECCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEeCCccccccc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeC
Q 016992 373 IQYYKMR 379 (379)
Q Consensus 373 ~~~~~~~ 379 (379)
+++|+||
T Consensus 343 ~~~~~~~ 349 (349)
T 3q7e_A 343 STDYRMR 349 (349)
T ss_dssp EEEEEEC
T ss_pred CceEecC
Confidence 9999996
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=371.53 Aligned_cols=294 Identities=52% Similarity=0.909 Sum_probs=271.3
Q ss_pred hhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHH
Q 016992 86 YYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVE 165 (379)
Q Consensus 86 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~ 165 (379)
.||+.|.++.+|..|++|..|+..|.++|.+.....++.+|||||||+|.+++.+++.|+.+|+|+|+++|++.|+++++
T Consensus 2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~ 81 (328)
T 1g6q_1 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHH
Confidence 58999999999999999999999999999877777788999999999999999999998889999999888999999999
Q ss_pred HcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeeccccccc
Q 016992 166 ANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245 (379)
Q Consensus 166 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~ 245 (379)
.+++.++|+++++|+.+++++.++||+|+++++++++.++..+..++.++.++|||||.++|+.+++++.+++...+...
T Consensus 82 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 161 (328)
T 1g6q_1 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDE 161 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHH
T ss_pred HcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCchhhhh
Confidence 99998889999999999887778999999999888888888999999999999999999999999999999988777666
Q ss_pred ccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe-----------------------
Q 016992 246 KIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT----------------------- 302 (379)
Q Consensus 246 ~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~----------------------- 302 (379)
...+|.+.+|++++.+.+.....|++..+++..++++|+.++++||.++..+++.|.
T Consensus 162 ~~~~w~~~~gf~~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~ 241 (328)
T 1g6q_1 162 KLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIV 241 (328)
T ss_dssp HHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEE
T ss_pred hhcccccccCcChHHHhhhhhcCCeEEEeccceeecCCEEEEEEECCCCChhHhceeeeEEEEEecCcEEEEEEEEEEEE
Confidence 677899999999999999988999999999999999999999999999876665322
Q ss_pred cC-----CcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceee-----eeec
Q 016992 303 CH-----KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHS-----AISR 372 (379)
Q Consensus 303 ~~-----~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 372 (379)
.. +++.+||+|..+.+||+|++|+|++|+.|++|++|++++++++++.++|+++|.++|+++|... ...+
T Consensus 242 ~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 321 (328)
T 1g6q_1 242 FPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKN 321 (328)
T ss_dssp CCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEEE
T ss_pred cCCCCCCCceEEECCCCcCCCcceeEEEEeCCceecCCCCEEEEEEEEEECCCCCceEEEEEEEEecCccCccccccccc
Confidence 22 3799999999999999999999999999999999999999999999999999999999999988 8889
Q ss_pred eEEeeeC
Q 016992 373 IQYYKMR 379 (379)
Q Consensus 373 ~~~~~~~ 379 (379)
+|+|+|+
T Consensus 322 ~~~~~~~ 328 (328)
T 1g6q_1 322 EGSYLMH 328 (328)
T ss_dssp EEEEEEC
T ss_pred ceeEEeC
Confidence 9999996
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=352.92 Aligned_cols=287 Identities=49% Similarity=0.862 Sum_probs=260.3
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~ 164 (379)
..||+.|....++..|++|..|+..|.++|.+.....++.+|||||||+|.+++.+++.|+.+|+|+|+++|++.|++++
T Consensus 27 ~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~ 106 (340)
T 2fyt_A 27 GVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 106 (340)
T ss_dssp ---CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHH
T ss_pred hhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHH
Confidence 45999999999999999999999999999998877889999999999999999999999878999999999899999999
Q ss_pred HHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccccc
Q 016992 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (379)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (379)
+.+++.++++++++|+.+++++.++||+|+++++++++.++.++..++.++.++|||||.++|+.+++++.++....+..
T Consensus 107 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 186 (340)
T 2fyt_A 107 RLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHA 186 (340)
T ss_dssp HHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecchhHhh
Confidence 99999888999999999988877899999999988889888999999999999999999999999999999998877777
Q ss_pred cccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe----------------------
Q 016992 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------------- 302 (379)
Q Consensus 245 ~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~---------------------- 302 (379)
....+|.+.+|++++.+.+.....|+++.+++..++++|+.+.++||.+...+++.|.
T Consensus 187 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wfd~ 266 (340)
T 2fyt_A 187 DRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDI 266 (340)
T ss_dssp HHTGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEE
T ss_pred hhhcccccccCcChHHHHHhhhcCcEEEEechhhcccCCEEEEEEECCCCcccccceEeeEEEEEccCcEEEEEEEEEEE
Confidence 7788999999999999998888899999999999999999999999998776554322
Q ss_pred -c----CCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceeeeeeceEEee
Q 016992 303 -C----HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYK 377 (379)
Q Consensus 303 -~----~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (379)
. ++++.|||+|..+.+||+|++|+|++|+.|++|++|+++++++.++.++|+++|.++|+. ++|.|+
T Consensus 267 ~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~~ 338 (340)
T 2fyt_A 267 YFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNN--------STQTYG 338 (340)
T ss_dssp EECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEETT--------EEEEEE
T ss_pred EeecCCCCCEEEECCCCcCCCccccEEEEeCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEc--------ceEEEe
Confidence 2 468999999999999999999999999999999999999999999999999999999854 368888
Q ss_pred eC
Q 016992 378 MR 379 (379)
Q Consensus 378 ~~ 379 (379)
||
T Consensus 339 ~~ 340 (340)
T 2fyt_A 339 LQ 340 (340)
T ss_dssp EC
T ss_pred cC
Confidence 86
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=350.32 Aligned_cols=286 Identities=35% Similarity=0.650 Sum_probs=255.9
Q ss_pred cchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHH
Q 016992 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQ 162 (379)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~ 162 (379)
..+.||+.|+.+..+..|++|..++..|.++|.......++.+|||||||+|.+++.+++.|+++|+|||+|+|++.|++
T Consensus 24 ~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~ 103 (376)
T 3r0q_C 24 DYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARA 103 (376)
T ss_dssp ----CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHH
Confidence 34679999999999999999999999999999988888899999999999999999999998889999999998999999
Q ss_pred HHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccc
Q 016992 163 IVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242 (379)
Q Consensus 163 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~ 242 (379)
+++.+++.++|+++++|+++++++ ++||+|+++++++++.++.++..++.++.++|||||.++|+.++++..++....+
T Consensus 104 ~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 182 (376)
T 3r0q_C 104 LVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIA 182 (376)
T ss_dssp HHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCTHH
T ss_pred HHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecchHH
Confidence 999999988899999999999887 8999999999999998888999999999999999999999999999999987755
Q ss_pred ccccc----------ccc---cccccccchhhhhh--------hccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCce-
Q 016992 243 KDDKI----------EFW---NNVYGFDMSCIKKQ--------AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS- 300 (379)
Q Consensus 243 ~~~~~----------~~w---~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~- 300 (379)
..... .+| .+.+|++++.+.+. ...+|+++.+.+..++++|+.++++||.++...++.
T Consensus 183 ~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~l~~ 262 (376)
T 3r0q_C 183 DRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEE 262 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCGGGTSE
T ss_pred hhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCHHHhcc
Confidence 43333 678 78999999999887 568999999999999999999999999998766542
Q ss_pred ----Ee--------------------c--------CCcEEEecCCC-CCCCCeeeEEEEcCCceecCCCCEEEEEEEEee
Q 016992 301 ----FT--------------------C--------HKLMGFSTGPK-SRATHWKQTVLYLEDVLTICEGEAISGSLTVAP 347 (379)
Q Consensus 301 ----f~--------------------~--------~~~~~lst~P~-~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~ 347 (379)
|+ . +.++.|||+|. .+.|||+|++|+|++|+.|++|++|++++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~ 342 (376)
T 3r0q_C 263 VRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSR 342 (376)
T ss_dssp EEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEE
T ss_pred cccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEEEEEEEE
Confidence 11 1 23589999998 468999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEcceeee
Q 016992 348 NKKNPRDVDIMLKYSLQGRHSA 369 (379)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~ 369 (379)
++.++|+++|.++|+++++..+
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~ 364 (376)
T 3r0q_C 343 SKENHRLMEIELNCEIKEASGN 364 (376)
T ss_dssp CSSCTTSEEEEEEEEEECSSSC
T ss_pred CCCCCeeEEEEEEEEecCcCCC
Confidence 9999999999999999887753
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=291.67 Aligned_cols=281 Identities=37% Similarity=0.576 Sum_probs=230.1
Q ss_pred cchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHH
Q 016992 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQ 162 (379)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~ 162 (379)
..+.||+.|.++..+..|++|..++..|.++|.......++.+|||||||+|.+++.+++.|+.+|+|+|++++++.|++
T Consensus 11 ~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~ 90 (348)
T 2y1w_A 11 SAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEV 90 (348)
T ss_dssp HHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHH
T ss_pred cHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHH
Confidence 34679999999999999999999999999999988888899999999999999999999988889999999987799999
Q ss_pred HHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccc
Q 016992 163 IVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242 (379)
Q Consensus 163 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~ 242 (379)
+++.+++.++++++++|+++++++ ++||+|+++++++++..+.. ...+..+.++|||||.++++.++++..++....+
T Consensus 91 ~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~-~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~ 168 (348)
T 2y1w_A 91 LVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERM-LESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQL 168 (348)
T ss_dssp HHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSH-HHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHH
T ss_pred HHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHH-HHHHHHHHhhcCCCeEEEEecCcEEEEEecchHH
Confidence 999999988899999999998776 78999999988776665544 4556678899999999999999999998877654
Q ss_pred ccc---ccccc--cccccccchhhhhhh----ccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCce-------Ee----
Q 016992 243 KDD---KIEFW--NNVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-------FT---- 302 (379)
Q Consensus 243 ~~~---~~~~w--~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~-------f~---- 302 (379)
..+ ...+| ....|++++.+.... +..|.++..+...... +.....+||.+....++. |+
T Consensus 169 ~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~~~~~~-~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~ 247 (348)
T 2y1w_A 169 YMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMA-KSVKYTVNFLEAKEGDLHRIEIPFKFHMLHS 247 (348)
T ss_dssp HHHHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCGGGBCB-CCEEEEEETTTCCGGGGSEEEEEEEEEBSSC
T ss_pred hhhhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECCeeecC-cceEEEEECCcCChHHhceeeeeEEEEEccC
Confidence 422 23456 357899998876654 3567777655443333 334567799887655542 11
Q ss_pred ----------------cCCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcce
Q 016992 303 ----------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR 366 (379)
Q Consensus 303 ----------------~~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (379)
++..+.+||+|..+.+||+|++|+|++|+.|++|++|+++++++.++.+ +++++++|++++.
T Consensus 248 g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~--~~~~~~~~~~~~~ 325 (348)
T 2y1w_A 248 GLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQ--SYDISIVAQVDQT 325 (348)
T ss_dssp EEEEEEEEEEEEEEECSSCEEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECTTS--SEEEEEEEEETTT
T ss_pred cEEEEEEEEEEEEEcCCCCceEEECCCCcCCCeeeeEEEeeCCceEeCCCCEEEEEEEEEECCCC--CcEEEEEEEEccc
Confidence 2347899999999999999999999999999999999999999988754 5778888888876
Q ss_pred ee
Q 016992 367 HS 368 (379)
Q Consensus 367 ~~ 368 (379)
..
T Consensus 326 ~~ 327 (348)
T 2y1w_A 326 GS 327 (348)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=310.92 Aligned_cols=260 Identities=22% Similarity=0.284 Sum_probs=218.7
Q ss_pred hhHHhhcCHHHHHHHHHHHHhcc--------CCCCCCEEEEEcCCCchHHHHHHHcC---CC--EEEEEecHHHHHHHHH
Q 016992 96 IHEEMLKDVVRTKSYQNVIYQNK--------FLFKDKVVLDVGAGTGILSLFCAKAG---AA--HVYAVECSQMANMAKQ 162 (379)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~--------~~~~~~~VLDlGcG~G~~~~~la~~g---~~--~v~~vD~s~~~~~a~~ 162 (379)
.++.+-+|..++..|.++|.+++ ....+.+|||+|||+|.++..+++++ .. +|+|||.|+++..|++
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~ 402 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLE 402 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHH
T ss_pred hhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 34557789999999999998643 22345689999999999966666543 33 7899999998889999
Q ss_pred HHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccc
Q 016992 163 IVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242 (379)
Q Consensus 163 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~ 242 (379)
....|++.++|+++++|++++.+| +++|+||||+||+++.+|.++ .++.+..++|||||.++|+.+++|++++++..+
T Consensus 403 ~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l 480 (637)
T 4gqb_A 403 NWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKL 480 (637)
T ss_dssp HHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHH
T ss_pred HHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHHH
Confidence 999999999999999999999998 899999999999999999987 789999999999999999999999999999988
Q ss_pred cccccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCC-C------ceEe-------------
Q 016992 243 KDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPG-D------ASFT------------- 302 (379)
Q Consensus 243 ~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~-~------~~f~------------- 302 (379)
+.+...+|...++++.. +..|++..+.+...+++|+.+++|||.+.... + +.|+
T Consensus 481 ~~e~~~~~~~~~~~~~~------~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~w 554 (637)
T 4gqb_A 481 YNEVRACREKDRDPEAQ------FEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGY 554 (637)
T ss_dssp HHHHHTTCCTTSCTTGG------GGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEEEEEE
T ss_pred HHHHHhcccccccchhh------cCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEEEEEE
Confidence 88877788777776542 46788888888899999999999999764432 1 1232
Q ss_pred ----cCCcEEEecCCCC---CCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceee
Q 016992 303 ----CHKLMGFSTGPKS---RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHS 368 (379)
Q Consensus 303 ----~~~~~~lst~P~~---~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (379)
+++++.|||+|.. +.|||+|++|||++|+.|++|++|+++++++.+.. .+|++|.++....
T Consensus 555 FD~~f~~~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R~~d~~-----kVWYEW~v~~p~~ 622 (637)
T 4gqb_A 555 FETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK-----KVWYEWAVTAPVC 622 (637)
T ss_dssp EEEEEETTEEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEECSS-----EEEEEEEEEESSC
T ss_pred EEEEeeCCeEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEEEEEeCCC-----ceeEEEEEeCCcC
Confidence 4578999999964 45999999999999999999999999999775542 3899999887653
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=301.04 Aligned_cols=263 Identities=17% Similarity=0.204 Sum_probs=211.5
Q ss_pred hhhHHhhcCHHHHHHHHHHHHhccCC-C----CCCEEEEEcCCCchHHHHHHHc----C----------CCEEEEEecHH
Q 016992 95 GIHEEMLKDVVRTKSYQNVIYQNKFL-F----KDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQ 155 (379)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~-~----~~~~VLDlGcG~G~~~~~la~~----g----------~~~v~~vD~s~ 155 (379)
..+..|++|..|+..|.++|.++... . .+.+|||||||+|.+++.++++ + +.+|+|||.|+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp 456 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP 456 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence 45677999999999999999887422 1 2468999999999997654332 2 24999999999
Q ss_pred -HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-----CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 156 -MANMAKQIVEANGFSNVITVLKGKIEEIELP-----VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 156 -~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
++..++... .|++.++|+++++|++++.++ .+++|+|||++||+++.+|-. +.+|..+.++|||||.+||+.
T Consensus 457 ~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~-pe~Ld~v~r~Lkp~Gi~iP~~ 534 (745)
T 3ua3_A 457 NAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELS-PECLDGVTGFLKPTTISIPQK 534 (745)
T ss_dssp HHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSH-HHHHHTTGGGSCTTCEEESCE
T ss_pred HHHHHHHHHH-hcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhcc-HHHHHHHHHhCCCCcEEECCc
Confidence 555555444 489999999999999999872 389999999999999988744 568888899999999999999
Q ss_pred CceEEEEeecccccccccccccc--ccccc-----c--------------hhhhhhhccCceEEeeCCCcccCC-CeeeE
Q 016992 230 ASLYLTAIEDAEYKDDKIEFWNN--VYGFD-----M--------------SCIKKQAMMEPLVDTVDQNQIVTN-CQLLK 287 (379)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~w~~--~~g~~-----~--------------~~~~~~~~~~~~~~~~~~~~~ls~-p~~l~ 287 (379)
+++|++++.+..++.+...++.. .+||. + .+.....+..|++..+.+..++++ |+.++
T Consensus 535 ~t~ylaPi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e~PyVv~l~~~~~Ls~~pq~vf 614 (745)
T 3ua3_A 535 YTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVF 614 (745)
T ss_dssp EEEEEEEEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHSSCEEECCCSCEESSSSCEEEE
T ss_pred cEEEEEEecCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccEEEeeccceecCCCCceEE
Confidence 99999999998876655444322 23332 1 233555678999999999999999 99999
Q ss_pred eeeCCCCCCCCce------Ee-----------------cCCcEEEecCCCCC---CCCeeeEEEEcCCceecCCCCEEEE
Q 016992 288 TMDISKMGPGDAS------FT-----------------CHKLMGFSTGPKSR---ATHWKQTVLYLEDVLTICEGEAISG 341 (379)
Q Consensus 288 ~~df~~~~~~~~~------f~-----------------~~~~~~lst~P~~~---~~~W~q~~~~l~~p~~v~~g~~i~~ 341 (379)
+||+.+....+.. |+ +.++|.|||+|.++ .+||+|++|||++|+.|++|+.|++
T Consensus 615 tFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk~V~LST~P~t~s~~mThWfQtfFPL~ePL~V~~GdeI~g 694 (745)
T 3ua3_A 615 TFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISL 694 (745)
T ss_dssp EEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEETTEEEECSSTTCCTTCCSCCCEEEEEEEEEEECTTCEEEE
T ss_pred EEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEecCCcEEecCCCCCCCCCccceeEEEecCCceEeCCCCEEEE
Confidence 9999887755543 22 34789999999876 5899999999999999999999999
Q ss_pred EEEEeeCCCCCceEEEEEEEEEc
Q 016992 342 SLTVAPNKKNPRDVDIMLKYSLQ 364 (379)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~ 364 (379)
+++++.+. ..+|++|.++
T Consensus 695 ~~~R~~d~-----~kVWYEW~v~ 712 (745)
T 3ua3_A 695 KIDRKVDN-----TGVWYEWHVE 712 (745)
T ss_dssp EEEEEEET-----TEEEEEEEEE
T ss_pred EEEEEcCC-----CCEEEEEEEE
Confidence 99976553 4589999987
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=285.28 Aligned_cols=277 Identities=36% Similarity=0.588 Sum_probs=223.7
Q ss_pred hhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHH
Q 016992 86 YYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVE 165 (379)
Q Consensus 86 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~ 165 (379)
.|++.|.....+..|+.|..+++.|.+++.......++.+|||||||+|.+++.+++.|..+|+|+|+|++++.|++++.
T Consensus 122 ~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~ 201 (480)
T 3b3j_A 122 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVK 201 (480)
T ss_dssp EEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHH
Confidence 45666666555788999999999999999987777788999999999999999999988889999999998899999999
Q ss_pred HcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeeccccccc
Q 016992 166 ANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245 (379)
Q Consensus 166 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~ 245 (379)
.+++.++|+++++|+.+++++ ++||+|+++++++++..+..+ ..+..+.++|||||.+++..++++..++....++.+
T Consensus 202 ~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~-~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e 279 (480)
T 3b3j_A 202 SNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERML-ESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYME 279 (480)
T ss_dssp HTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHH-HHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHH
T ss_pred HcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHH-HHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHH
Confidence 999988899999999988766 789999999887776665544 455578899999999999999999998877654322
Q ss_pred ---cccccc--ccccccchhhhhhh----ccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCce-----E--e-------
Q 016992 246 ---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-----F--T------- 302 (379)
Q Consensus 246 ---~~~~w~--~~~g~~~~~~~~~~----~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~-----f--~------- 302 (379)
...+|. ..+|++++.+.... +..|+++..+.....+.+. ...+||.+...+++. | +
T Consensus 280 ~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~tl-~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~ 358 (480)
T 3b3j_A 280 QFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLV 358 (480)
T ss_dssp HHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCCE-EEEEETTTCCTTTTTEEEEEEEEECSSCEEE
T ss_pred HhhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccchhh-hhhhhhhcCChhhhcceeeeEEEEEccCcEE
Confidence 234563 57899998876654 3457776655555555544 458899876655442 1 1
Q ss_pred -------------cCCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEccee
Q 016992 303 -------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH 367 (379)
Q Consensus 303 -------------~~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (379)
++..+.|||+|..+.+||+|++|+|++|+.|++|++|+++++++.++. ++++|+++|.+++..
T Consensus 359 hg~~~wFd~~~~~~~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~--~~~~v~~~~~~~~~~ 434 (480)
T 3b3j_A 359 HGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKR--QSYDISIVAQVDQTG 434 (480)
T ss_dssp EEEEEEEEEEEECSSCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTT--SSEEEEEEEEETTTC
T ss_pred EEEEEEEEEEEcCCCCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCC--CCcEEEEEEEEccCC
Confidence 234788999999999999999999999999999999999999998865 456889999988865
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-17 Score=146.69 Aligned_cols=105 Identities=17% Similarity=0.276 Sum_probs=90.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-C--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-G--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..+|.+|||||||+|.++..+++. + ..+|+|||+|+ |++.|++++...+...+|+++++|+.++++ +.||+|++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~ 145 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL 145 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--ccccccee
Confidence 578999999999999999999984 2 34999999999 999999999998888889999999998876 56999999
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.+++. ......++++++++|||||.++.
T Consensus 146 ~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii 176 (261)
T 4gek_A 146 NFTLQFLE-PSERQALLDKIYQGLNPGGALVL 176 (261)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeeeecC-chhHhHHHHHHHHHcCCCcEEEE
Confidence 76544442 34556899999999999999985
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=142.27 Aligned_cols=107 Identities=18% Similarity=0.282 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...++.++++++++|+.++++++++||+|++..
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 5577889999999999999999997555999999999 999999999999998889999999999888778999999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+.+++ ++..++.++.++|||||+++...
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 54433 47889999999999999998543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=144.60 Aligned_cols=106 Identities=20% Similarity=0.321 Sum_probs=94.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++++..+++++++++++|+.++++++++||+|++..+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 578899999999999999999998667999999999 9999999999999988899999999998877789999998765
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
.+.+ .+..++.++.++|||||+++...
T Consensus 124 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 124 IYNI----GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp GGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 4333 56889999999999999998543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=142.86 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=95.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
..+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++++|+.++++ +++|
T Consensus 26 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~f 104 (256)
T 1nkv_A 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKC 104 (256)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCC
Confidence 33444456678999999999999999999985334999999999 999999999999987789999999999877 5899
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|++..+.+ +..++..++.++.++|||||.++..
T Consensus 105 D~V~~~~~~~---~~~~~~~~l~~~~r~LkpgG~l~~~ 139 (256)
T 1nkv_A 105 DVAACVGATW---IAGGFAGAEELLAQSLKPGGIMLIG 139 (256)
T ss_dssp EEEEEESCGG---GTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred CEEEECCChH---hcCCHHHHHHHHHHHcCCCeEEEEe
Confidence 9999865433 3356789999999999999999853
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=141.76 Aligned_cols=117 Identities=20% Similarity=0.144 Sum_probs=99.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+.+.+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++++|+.++++++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 34455555566778999999999999999999985346999999999 99999999999998888999999999988877
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++||+|++..+ +.+..+...++.++.++|||||.++..
T Consensus 128 ~~fD~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~i~ 165 (273)
T 3bus_A 128 ASFDAVWALES---LHHMPDRGRALREMARVLRPGGTVAIA 165 (273)
T ss_dssp TCEEEEEEESC---TTTSSCHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCccEEEEech---hhhCCCHHHHHHHHHHHcCCCeEEEEE
Confidence 89999998655 334466789999999999999999854
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=136.15 Aligned_cols=104 Identities=26% Similarity=0.364 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
.++.+|||+|||+|.+++.++..+..+|+|+|+++ +++.|++++..+++ ++++++++|+.++. ++.++||+|++++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 57889999999999999988888888999999999 99999999999998 67999999998874 3358999999986
Q ss_pred CccccCChhhHHHHHHHHHh--cccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDK--WLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~--~LkpgG~lip 227 (379)
+ +. .....+..++..+.+ +|+|||.++.
T Consensus 122 p-~~-~~~~~~~~~l~~~~~~~~L~pgG~l~~ 151 (189)
T 3p9n_A 122 P-YN-VDSADVDAILAALGTNGWTREGTVAVV 151 (189)
T ss_dssp C-TT-SCHHHHHHHHHHHHHSSSCCTTCEEEE
T ss_pred C-CC-cchhhHHHHHHHHHhcCccCCCeEEEE
Confidence 5 22 123567889999988 9999999985
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=140.72 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=93.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
..+.......++.+|||||||+|.++..+++.+..+|+|+|+++ +++.|+++.. ..+++++++|+.++++++++|
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCe
Confidence 34555555668899999999999999999998777999999999 9999998765 256999999999998877899
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|++..+.+ +..++..+++++.++|||||.++..
T Consensus 110 D~v~~~~~l~---~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 110 NVVLSSLALH---YIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp EEEEEESCGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEchhhh---hhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 9999876533 3367889999999999999999854
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-16 Score=137.40 Aligned_cols=114 Identities=20% Similarity=0.301 Sum_probs=96.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
+.+.+.......++ +|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++...++.++++++++|+.+++++++
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 34444444444555 9999999999999999997445999999999 999999999999987789999999999988878
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+||+|++..+.+++ .++..++.++.++|+|||.++.
T Consensus 111 ~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~ 146 (219)
T 3dlc_A 111 YADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYI 146 (219)
T ss_dssp CEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred cccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEE
Confidence 99999997653433 6788999999999999999885
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-16 Score=140.79 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=91.4
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++++...+++ ++.++++|+.++++++++||+|++.
T Consensus 33 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~fD~V~~~ 110 (260)
T 1vl5_A 33 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHIVTCR 110 (260)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEEEEEE
T ss_pred hCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCEEEEEEh
Confidence 3456889999999999999999998764 999999999 999999999998885 6999999999998888899999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.+ +..++..++.++.++|||||.++.
T Consensus 111 ~~l~---~~~d~~~~l~~~~r~LkpgG~l~~ 138 (260)
T 1vl5_A 111 IAAH---HFPNPASFVSEAYRVLKKGGQLLL 138 (260)
T ss_dssp SCGG---GCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhH---hcCCHHHHHHHHHHHcCCCCEEEE
Confidence 5433 336778999999999999999985
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=148.15 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=93.6
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++++|+. +++++++|+.+++...++||+|+
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEE
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEE
Confidence 45678899999999999999999984 346999999999 999999999999985 59999999998764347899999
Q ss_pred EecCccccCC---hh----------------hHHHHHHHHHhcccCCEEEEecCCce
Q 016992 195 SEWMGYFLLF---EN----------------MLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 195 ~~~~~~~l~~---~~----------------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
+++++++... .+ ....++.++.++|||||++++++|++
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 9876544321 11 12588899999999999999877765
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=145.01 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=93.2
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----CCCce
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~ 190 (379)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+. +++++++|+.++.. ..++|
T Consensus 79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccC
Confidence 34578899999999999999999983 447999999999 999999999999985 69999999988754 24789
Q ss_pred eEEEEecCccccCC---------------hhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 191 DIIISEWMGYFLLF---------------ENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 191 D~Iv~~~~~~~l~~---------------~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
|+|+++++++++.. ......++..+.++|||||.+++++|++
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 99999976554311 1234688999999999999999877665
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=141.14 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=96.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
....+.......++.+|||||||+|.++..+++. | .+|+|+|+|+ +++.|++++...++.++++++++|+.++ +
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 3444555566788999999999999999999996 7 5999999999 9999999999999988899999999887 4
Q ss_pred CceeEEEEecCccccCC------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++||+|++..+.+++.. ...+..++.++.++|||||.++.
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 181 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL 181 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 89999999765444422 25668999999999999999985
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=137.33 Aligned_cols=114 Identities=14% Similarity=0.068 Sum_probs=94.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+...+.......++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++...+ +++++++|+.+++ ++
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-CS
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-CC
Confidence 4444455455566788999999999999999999864 999999999 9999999876643 6999999999987 45
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++||+|++..+.+++.....+..++.++.++|||||.++.
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 152 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 8999999987656665445567889999999999999984
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=141.33 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=93.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...++.+|||||||+|.++..+++. |. +|+|+|+|+ +++.|++++...++.++++++++|+.++++++++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5678899999999999999999985 65 999999999 99999999999998888999999999998887899999986
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+.+ +..++..++.++.++|||||.++..
T Consensus 158 ~~l~---~~~~~~~~l~~~~~~LkpgG~l~~~ 186 (297)
T 2o57_A 158 DAFL---HSPDKLKVFQECARVLKPRGVMAIT 186 (297)
T ss_dssp SCGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhh---hcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 5533 3356889999999999999999853
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-16 Score=136.29 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=90.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCC----cEEEEEcceeeccCCCCceeE
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN----VITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~D~ 192 (379)
...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|++++..++++. +++++++|+...+.+.++||+
T Consensus 26 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (217)
T 3jwh_A 26 KQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDA 105 (217)
T ss_dssp HHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSE
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCE
Confidence 34577899999999999999999964 46999999999 9999999998887754 799999999776665678999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|++..+.+++ ....+..+++++.++|||||.++.
T Consensus 106 v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~ 139 (217)
T 3jwh_A 106 ATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVT 139 (217)
T ss_dssp EEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9987654444 334568999999999999998774
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=142.86 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=96.2
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 112 NVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 112 ~~i~~~~~-~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
+.+..... ..++.+|||+|||+|.++..+++. + .+|+|+|+++ +++.|++++..+++.++++++++|+.+++++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 184 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG 184 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence 34555554 678899999999999999999996 5 4999999999 999999999999998889999999999888778
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+||+|++..+.+++ .+..++.++.++|||||+++.
T Consensus 185 ~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~ 219 (312)
T 3vc1_A 185 AVTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVT 219 (312)
T ss_dssp CEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CEeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEE
Confidence 99999987553333 288999999999999999984
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=131.49 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=86.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEe
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISE 196 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~ 196 (379)
...++.+|||+|||+|.++..+++. ..+|+|+|+|+ |++.|+++++.+++ +++++++.++..+. +.+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 3568899999999999999999998 56999999999 99999999999998 67999998888753 335789999987
Q ss_pred cCccccC-------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL-------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ ++... .......++.++.++|||||.++.
T Consensus 97 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 133 (185)
T 3mti_A 97 L-GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133 (185)
T ss_dssp E-C-----------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred C-CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence 3 22221 224556788999999999999984
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=141.36 Aligned_cols=105 Identities=17% Similarity=-0.046 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH----------cC------CCCcEEEEEcceee
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----------NG------FSNVITVLKGKIEE 182 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~----------~~------~~~~i~~~~~d~~~ 182 (379)
..++.+|||+|||+|..+..+++.|. +|+|||+|+ |++.|+++... .+ ...+|+++++|+.+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35788999999999999999999987 999999999 99999776431 00 12469999999999
Q ss_pred ccCCC-CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 183 IELPV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 183 ~~~~~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++.++ ++||+|++..+...+ .......+++++.++|||||+++
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEE
Confidence 88653 799999986543333 34567789999999999999986
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=137.68 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=85.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC-----------CCCcEEEEEcceeeccCC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-----------FSNVITVLKGKIEEIELP 186 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~-----------~~~~i~~~~~d~~~~~~~ 186 (379)
...++.+|||+|||+|..+..+++.|. +|+|||+|+ |++.|+++..... ...+++++++|+.+++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 346788999999999999999999876 999999999 9999998754210 024699999999998765
Q ss_pred C-CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+ ++||+|++..+.+++ .......+++++.++|||||+++
T Consensus 98 ~~~~fD~v~~~~~l~~l-~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cCCCEEEEEECcchhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 4 689999986543333 34556789999999999999844
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=136.78 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=87.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeeccC--CCCc-eeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL--PVTK-VDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~-~D~Iv~~ 196 (379)
++.+|||+|||+|.+++.++..+..+|+|+|+|+ |++.|++++..+++. ++++++++|+.++.. +.++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 6789999999999999998887777999999999 999999999999984 579999999988643 2478 9999998
Q ss_pred cCccccCChhhHHHHHHHH--HhcccCCEEEEecC
Q 016992 197 WMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPDK 229 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~~ 229 (379)
++ +. ......++..+ .++|+|||.++...
T Consensus 133 ~~-~~---~~~~~~~l~~~~~~~~LkpgG~l~i~~ 163 (201)
T 2ift_A 133 PP-FH---FNLAEQAISLLCENNWLKPNALIYVET 163 (201)
T ss_dssp CC-SS---SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CC-CC---CccHHHHHHHHHhcCccCCCcEEEEEE
Confidence 75 32 35677888888 67899999998543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=135.23 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCC----cEEEEEcceeeccCCCCceeEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN----VITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~D~I 193 (379)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++++ +++++++|+...+.+.++||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 3577899999999999999999864 36999999999 9999999998877754 7999999998777666899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++..+..++ ....+..+++++.++|||||.++.
T Consensus 107 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~ 139 (219)
T 3jwg_A 107 TVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVS 139 (219)
T ss_dssp EEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEE
Confidence 987654444 223557999999999999997763
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=139.97 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=94.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (379)
..++.+|||||||+|.++..+++.|..+|+|+|+++ +++.|++++...++..++.++++|+.++++ ++++||+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 467889999999999999999888777999999999 999999999988877789999999998876 468999999875
Q ss_pred Ccccc-CChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 MGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+++ .+...+..++.++.++|||||.++..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 43322 45677889999999999999999853
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=131.91 Aligned_cols=106 Identities=11% Similarity=0.136 Sum_probs=88.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++. ..+|+|+|+++ +++.|+++++.++++++++++++|+.+.....+.||+
T Consensus 47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~ 125 (204)
T 3njr_A 47 TLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEA 125 (204)
T ss_dssp HHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSE
T ss_pred HHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCE
Confidence 333345678899999999999999999998 55999999999 9999999999999976899999999884333368999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++.. .+ ... ++..+.++|||||+++..
T Consensus 126 v~~~~---~~----~~~-~l~~~~~~LkpgG~lv~~ 153 (204)
T 3njr_A 126 VFIGG---GG----SQA-LYDRLWEWLAPGTRIVAN 153 (204)
T ss_dssp EEECS---CC----CHH-HHHHHHHHSCTTCEEEEE
T ss_pred EEECC---cc----cHH-HHHHHHHhcCCCcEEEEE
Confidence 99754 12 345 899999999999999853
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=142.90 Aligned_cols=122 Identities=19% Similarity=0.125 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEEEEccee
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKIE 181 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~ 181 (379)
+...+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...+.. .++.+..+|+.
T Consensus 41 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~ 119 (293)
T 3thr_A 41 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 119 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence 3445555565555556788999999999999999999876 999999999 999999887544322 35789999998
Q ss_pred ecc---CCCCceeEEEEe-cCccccCC----hhhHHHHHHHHHhcccCCEEEEec
Q 016992 182 EIE---LPVTKVDIIISE-WMGYFLLF----ENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 182 ~~~---~~~~~~D~Iv~~-~~~~~l~~----~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++ +++++||+|++. .+..++.. ...+..+++++.++|||||+++..
T Consensus 120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 887 667899999985 33333332 244889999999999999999843
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-15 Score=133.46 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=93.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
+...+.......++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...+. +++++++|+.+++++ +
T Consensus 29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~ 104 (252)
T 1wzn_A 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-N 104 (252)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-S
T ss_pred HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-C
Confidence 333344334446778999999999999999999865 999999999 99999999988775 589999999998776 7
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||+|++............+..++..+.++|+|||.++..
T Consensus 105 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 8999998532223334467789999999999999999854
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=132.50 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
+.+.+.+.+.... .++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++..++ .+++++++|+.+++
T Consensus 24 ~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~ 98 (227)
T 1ve3_A 24 RIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS 98 (227)
T ss_dssp HHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC
Confidence 3445556666443 3578999999999999999999866 999999999 9999999998877 46999999999887
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.++||+|++..+ ..+.+...+..++.++.++|+|||.++.
T Consensus 99 ~~~~~~D~v~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 140 (227)
T 1ve3_A 99 FEDKTFDYVIFIDS-IVHFEPLELNQVFKEVRRVLKPSGKFIM 140 (227)
T ss_dssp SCTTCEEEEEEESC-GGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCcEEEEEEcCc-hHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 77689999999764 2234456778999999999999999984
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=134.95 Aligned_cols=105 Identities=21% Similarity=0.303 Sum_probs=92.4
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++...+++ +++++++|++++++++++||+|++.
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSFDIITCR 94 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCcEEEEEEC
Confidence 4567899999999999999999998764 999999999 999999999988885 6999999999988877899999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.+ +..++..++.++.++|||||.++.
T Consensus 95 ~~l~---~~~~~~~~l~~~~~~LkpgG~l~~ 122 (239)
T 1xxl_A 95 YAAH---HFSDVRKAVREVARVLKQDGRFLL 122 (239)
T ss_dssp SCGG---GCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred Cchh---hccCHHHHHHHHHHHcCCCcEEEE
Confidence 5433 336778999999999999999984
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=137.32 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=91.1
Q ss_pred cCCC-CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEE
Q 016992 118 KFLF-KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 118 ~~~~-~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|+++ +++.|++++..+++.++++++++|+.++. ++.++||+|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 4455 7899999999999999999997666999999999 99999999999999888999999999876 345899999
Q ss_pred EEecCcccc-----CC------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFL-----LF------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l-----~~------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++++.+.. .. ...+..++..+.++|||||+++.
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 998752221 00 12356799999999999999984
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=131.15 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~ 197 (379)
..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|+++++.+++.++++++++|+.+. +...++||+|++++
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 467889999999999999999998777999999999 9999999999999877899999999873 32236799999986
Q ss_pred CccccCChhhHHHHHHHHH--hcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARD--KWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip 227 (379)
+ +. ......++..+. ++|+|||.++.
T Consensus 109 ~-~~---~~~~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 109 P-YA---KETIVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp S-SH---HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred C-CC---cchHHHHHHHHHhCCCcCCCcEEEE
Confidence 4 21 244566677776 99999999984
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=133.21 Aligned_cols=106 Identities=26% Similarity=0.266 Sum_probs=92.6
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....++.+|||+|||+|.++..+++.+ ..+|+|+|+++ +++.|++++...+++ +++++++|+.++++++++||+|+
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIF 111 (219)
T ss_dssp HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEEE
T ss_pred hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEEE
Confidence 445788899999999999999999863 46999999999 999999999999885 69999999999888778999999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+..+.+++ .+...++.++.++|+|||.++.
T Consensus 112 ~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i 141 (219)
T 3dh0_A 112 MAFTFHEL---SEPLKFLEELKRVAKPFAYLAI 141 (219)
T ss_dssp EESCGGGC---SSHHHHHHHHHHHEEEEEEEEE
T ss_pred eehhhhhc---CCHHHHHHHHHHHhCCCeEEEE
Confidence 87653333 5678999999999999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-16 Score=151.72 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=103.9
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAK 161 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~ 161 (379)
..|..++...+....|+ +.......+|.+|||+|||+|..+..+|+. +.++|+|+|+++ +++.++
T Consensus 76 ~~~~~G~~~vQd~ss~l------------~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~ 143 (464)
T 3m6w_A 76 PFFYAGLYYIQEPSAQA------------VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL 143 (464)
T ss_dssp HHHHTTSEEECCTTTHH------------HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH
T ss_pred hHHhCCeEEEECHHHHH------------HHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 45666665554444433 222345678999999999999999999984 346999999999 999999
Q ss_pred HHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEecCccccCC---hh----------------hHHHHHHHHHhcccC
Q 016992 162 QIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFLLF---EN----------------MLNTVLYARDKWLVD 221 (379)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l~~---~~----------------~~~~~l~~~~~~Lkp 221 (379)
++++++|+. |.++++|+.++.. ..++||+|++++++++... .+ ....++..+.++|||
T Consensus 144 ~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 221 (464)
T 3m6w_A 144 ENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP 221 (464)
T ss_dssp HHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHcCCe--EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999985 9999999988752 2478999999987654311 01 126789999999999
Q ss_pred CEEEEecCCceE
Q 016992 222 DGIVLPDKASLY 233 (379)
Q Consensus 222 gG~lip~~~~~~ 233 (379)
||+|++++|++.
T Consensus 222 GG~LvysTCs~~ 233 (464)
T 3m6w_A 222 GGVLVYSTCTFA 233 (464)
T ss_dssp EEEEEEEESCCC
T ss_pred CcEEEEEeccCc
Confidence 999999888763
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=137.39 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~~ 197 (379)
.+|.+|||||||+|..+..+++.+..+|++||+++ +++.|+++....+ .+++++.+|+.++ .+++++||.|+.+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEee
Confidence 68899999999999999999987556999999999 9999999988776 4589999998775 35678999999875
Q ss_pred C--ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 M--GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~--~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+ .+.+.+..+...++.++.|+|||||+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 4 233455667889999999999999999853
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=135.57 Aligned_cols=102 Identities=14% Similarity=0.247 Sum_probs=87.1
Q ss_pred ccCCCCCCEEEEEcCCCchHH-HHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 117 NKFLFKDKVVLDVGAGTGILS-LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~-~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
...+.++.+|||||||+|.++ +.+|+....+|+|+|+++ |++.|+++++..|+ ++|+++++|+.+++ +++||+|+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~ 193 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLM 193 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEE
Confidence 356789999999999998665 566774445999999999 99999999999999 78999999999875 48999999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... .++...+++++.++|||||+++.
T Consensus 194 ~~a~------~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 194 VAAL------AEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp ECTT------CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred ECCC------ccCHHHHHHHHHHHcCCCcEEEE
Confidence 7532 25678999999999999999984
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=148.73 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=93.8
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
....++.+|||+|||+|..+..+++. +. .+|+|+|+++ +++.++++++++|+. +++++++|+.+++ +++++||+
T Consensus 255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEE
T ss_pred cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCE
Confidence 45678899999999999999999984 33 6999999999 999999999999985 5999999998876 44478999
Q ss_pred EEEecCccccCC---hhh----------------HHHHHHHHHhcccCCEEEEecCCce
Q 016992 193 IISEWMGYFLLF---ENM----------------LNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 193 Iv~~~~~~~l~~---~~~----------------~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
|++++++++... .++ ...++..+.++|||||.+++++|++
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999877654421 111 1578999999999999999877765
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=136.33 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (379)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|+++....+ .+++++++|+.++ ++++++||+|+++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence 357889999999999999999887666999999999 9999999887766 4699999999998 7777899999983
Q ss_pred cCc--cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 197 WMG--YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 197 ~~~--~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
... ....+......++.++.++|||||+++..
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 221 11122344567899999999999999854
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-15 Score=129.18 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=90.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+++ +++.|++++..+++ ++++++++|+.+.....++||
T Consensus 32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~D 110 (204)
T 3e05_A 32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPDPD 110 (204)
T ss_dssp HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCCCS
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCCCC
Confidence 4444566788999999999999999999964 57999999999 99999999999998 679999999976544347899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++.... ..+..++.++.++|+|||+++.
T Consensus 111 ~i~~~~~~------~~~~~~l~~~~~~LkpgG~l~~ 140 (204)
T 3e05_A 111 RVFIGGSG------GMLEEIIDAVDRRLKSEGVIVL 140 (204)
T ss_dssp EEEESCCT------TCHHHHHHHHHHHCCTTCEEEE
T ss_pred EEEECCCC------cCHHHHHHHHHHhcCCCeEEEE
Confidence 99986532 2577899999999999999984
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-15 Score=127.22 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=90.1
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++...+++ +++++++|+.++++ .++||+|++.
T Consensus 28 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~~D~v~~~ 104 (199)
T 2xvm_A 28 VKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-DRQYDFILST 104 (199)
T ss_dssp TTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-CCCEEEEEEE
T ss_pred hhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-CCCceEEEEc
Confidence 3345778999999999999999999865 999999999 999999999988874 59999999999877 5899999997
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+.+++ .......++.++.++|||||.++
T Consensus 105 ~~l~~~-~~~~~~~~l~~~~~~L~~gG~l~ 133 (199)
T 2xvm_A 105 VVLMFL-EAKTIPGLIANMQRCTKPGGYNL 133 (199)
T ss_dssp SCGGGS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred chhhhC-CHHHHHHHHHHHHHhcCCCeEEE
Confidence 654443 23477899999999999999976
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=137.20 Aligned_cols=102 Identities=25% Similarity=0.276 Sum_probs=89.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~ 199 (379)
++.+|||||||+|.++..+++.|. +|+|+|+++ +++.|++++...++..+++++++|+.+++ +.+++||+|++..+.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999865 999999999 99999999999888778999999999987 556899999987653
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++ ..++..++.++.++|||||.++.
T Consensus 147 ~~---~~~~~~~l~~~~~~LkpgG~l~~ 171 (285)
T 4htf_A 147 EW---VADPRSVLQTLWSVLRPGGVLSL 171 (285)
T ss_dssp GG---CSCHHHHHHHHHHTEEEEEEEEE
T ss_pred hc---ccCHHHHHHHHHHHcCCCeEEEE
Confidence 33 36778999999999999999984
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=132.44 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~~~ 199 (379)
++.+|||+|||+|.+++.+++.+..+|+|+|+++ |++.|++++..+++ ++++++++|+.+. +...++||+|+++++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 6789999999999999998887777999999999 99999999999998 5799999999874 444578999999865
Q ss_pred cccCChhhHHHHHHHHHh--cccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDK--WLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~--~LkpgG~lip~ 228 (379)
+. ......++..+.+ +|+|||+++.+
T Consensus 132 ~~---~~~~~~~l~~l~~~~~L~pgG~l~i~ 159 (202)
T 2fpo_A 132 FR---RGLLEETINLLEDNGWLADEALIYVE 159 (202)
T ss_dssp SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CC---CCcHHHHHHHHHhcCccCCCcEEEEE
Confidence 32 2456677777754 69999999854
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=141.36 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=97.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHH--HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA--KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la--~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (379)
.|.+.+. ....++.+|||||||+|.++..++ ..+..+|+|+|+++ +++.|++++...++.++++++++|+.++++
T Consensus 107 ~~~~~l~--~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (305)
T 3ocj_A 107 HFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT 184 (305)
T ss_dssp HHHHHHH--HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC
T ss_pred HHHHHHH--hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc
Confidence 3555553 345788999999999999999985 34556999999999 999999999999988889999999999988
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+ ++||+|++..+.+++........++.++.++|||||+++...
T Consensus 185 ~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 185 R-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp C-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred c-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 7 999999987655555444445568999999999999998643
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=129.60 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEE
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (379)
...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++.++++++++|+.++. ...++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3467889999999999999999985 456999999999 99999999999998778999999998875 4458999999
Q ss_pred EecCcc-------ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 195 SEWMGY-------FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 195 ~~~~~~-------~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++. + ..........++.++.++|||||+++.
T Consensus 99 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 99 FNLG-YLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp EEES-BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EcCC-cccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 9853 2 112233556799999999999999984
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=135.86 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=98.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
.+...+.......++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|++++...+++ +++++++|+.+++++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCC
Confidence 344445555556789999999999999999999963 56999999999 999999999999885 599999999999887
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++||+|++..+.+.+ .++..++.++.++|||||.++..
T Consensus 103 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 141 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVI 141 (276)
T ss_dssp TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 7899999987654433 66789999999999999999853
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=134.73 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=94.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+...+.......++.+|||||||+|.++..+++.+..+|+++|+++ +++.|++++... .+++++++|+.++++++
T Consensus 80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~ 156 (254)
T 1xtp_A 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS
T ss_pred HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCC
Confidence 34444555555667899999999999999999987667899999999 999999887654 46999999999988777
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++||+|++..+.+++. ..++..++.++.++|||||.++..
T Consensus 157 ~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 196 (254)
T 1xtp_A 157 NTYDLIVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp SCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8999999876533332 156789999999999999999854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=134.35 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=91.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
+...+... ..++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|+++... . .+++++++|+.+++++++
T Consensus 32 ~~~~l~~~--~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~~~~ 106 (215)
T 2pxx_A 32 FRALLEPE--LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDFPSA 106 (215)
T ss_dssp HHHHHGGG--CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCSCSS
T ss_pred HHHHHHHh--cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCCCCC
Confidence 44455543 367889999999999999999998766999999999 99999988764 2 469999999999887778
Q ss_pred ceeEEEEecCccccC------------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLL------------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~------------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+||+|++..+...+. +......++.++.++|||||.++.
T Consensus 107 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 157 (215)
T 2pxx_A 107 SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157 (215)
T ss_dssp CEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEE
Confidence 999999875433332 234668999999999999999884
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.6e-15 Score=133.55 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=93.0
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQ-NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~-~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
...+.+.+.. .....++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|++++ . +...+++++++|+.+++
T Consensus 23 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~ 99 (263)
T 2yqz_A 23 AGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIP 99 (263)
T ss_dssp HHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCC
T ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCC
Confidence 3344444432 2345678899999999999999999885 4999999999 999999987 2 22356999999999988
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++++||+|++..+.+ +..+...++.++.++|||||.++..
T Consensus 100 ~~~~~fD~v~~~~~l~---~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 100 LPDESVHGVIVVHLWH---LVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp SCTTCEEEEEEESCGG---GCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCeeEEEECCchh---hcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 7778999999875433 3357789999999999999999854
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=148.85 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=92.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEec
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (379)
+|.+|||+|||+|..+..+|+. + .++|+|+|+++ +++.++++++++|+. +|.++++|+.++.. ..++||+|++++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence 8899999999999999999984 3 46999999999 999999999999985 59999999988753 347899999998
Q ss_pred CccccCC---hh----------------hHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 198 MGYFLLF---EN----------------MLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 198 ~~~~l~~---~~----------------~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
++++... .+ ....++.++.++|||||+|++++|++.
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 7654311 01 124788899999999999999888764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=128.99 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----CCCceeEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv 194 (379)
..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++.++++++++|+.+... +.++||+|+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 357889999999999999999888777999999999 999999999999887789999999987431 247899999
Q ss_pred EecCccccCChhhHHHHHHHH--HhcccCCEEEEec
Q 016992 195 SEWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~ 228 (379)
++++ +.. .....++..+ .++|+|||.++..
T Consensus 122 ~~~~-~~~---~~~~~~~~~l~~~~~L~~gG~l~~~ 153 (187)
T 2fhp_A 122 LDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCE 153 (187)
T ss_dssp ECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ECCC-CCc---hhHHHHHHHHHHhcccCCCCEEEEE
Confidence 9865 332 3345566666 8899999999853
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=138.87 Aligned_cols=95 Identities=21% Similarity=0.135 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..+.+|||||||+|.++..+++.+. +|+|||+|+ |++.|++. .+|+++++|++++++++++||+|++....
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~ 109 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPASVDVAIAAQAM 109 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSCEEEEEECSCC
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCcccEEEEeeeh
Confidence 3456999999999999999999865 999999999 99887642 46999999999999998999999986543
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+. -+.+.++.++.|+|||||+|+.
T Consensus 110 h~----~~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 110 HW----FDLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp TT----CCHHHHHHHHHHHEEEEEEEEE
T ss_pred hH----hhHHHHHHHHHHHcCCCCEEEE
Confidence 22 3467899999999999999874
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.6e-15 Score=136.29 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcceeeccCCC------Cce
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELPV------TKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~--~g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~------~~~ 190 (379)
.++.+|||||||+|.++..+++ .+..+|+|+|+|+ +++.|++++... +...+++++++|+++++++. ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 5788999999999999999997 3567999999999 999999999887 44568999999999988765 799
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++..+.+++ ++..++.++.++|||||.++.
T Consensus 115 D~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 115 DMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 999997653333 778999999999999999984
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=139.31 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.+++.+++.+..+|+|+|+|+ +++.|+++++.+++.++++++++|+.++.. .++||+|+++++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 357899999999999999999998776899999999 999999999999998789999999998876 489999999765
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
. ....++..+.++|||||.++..
T Consensus 202 ~-------~~~~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 202 V-------RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp S-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred h-------hHHHHHHHHHHHCCCCeEEEEE
Confidence 2 1246777888999999999843
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-16 Score=141.88 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----------------------------
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------- 169 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~---------------------------- 169 (379)
...++.+|||||||+|.++..++..|+.+|+|+|+|+ |++.|+++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567889999999999988888777777899999999 99999987754320
Q ss_pred CCcEE-EEEcceeec-cC---CCCceeEEEEecCcccc-CChhhHHHHHHHHHhcccCCEEEEec
Q 016992 170 SNVIT-VLKGKIEEI-EL---PVTKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 170 ~~~i~-~~~~d~~~~-~~---~~~~~D~Iv~~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+|. ++++|+.+. ++ ..++||+|++..+.+++ .+..++..++.++.++|||||.|+.+
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 01354 889999874 32 24789999997654433 23356778999999999999999965
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=134.73 Aligned_cols=114 Identities=21% Similarity=0.187 Sum_probs=95.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
..+.+.......++.+|||||||+|.++..+++ .|. +|+|+|+|+ +++.|++++...++..+++++.+|+.+++
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 444556666677889999999999999999995 665 999999999 99999999998888778999999998764
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++||+|++..+..++. ...+..++.++.++|||||.++..
T Consensus 128 ~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 167 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFG-HERYDAFFSLAHRLLPADGVMLLH 167 (287)
T ss_dssp CCCSEEEEESCGGGTC-TTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCeeEEEEeCchhhcC-hHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7899999875433331 156789999999999999999853
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=134.02 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec-C
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~-~ 198 (379)
.++.+|||+|||+|.++..+++.+. +|+|+|+++ |++.|++++...+. +++++++|+.+++++ ++||+|++.. +
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~ 111 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCcc
Confidence 3778999999999999999999865 899999999 99999999988775 589999999998877 8999999864 4
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+++.....+..++.++.++|||||.++.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 34444446788999999999999999985
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-15 Score=131.89 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++...+ +++++++|+.+++++ ++||+|++..
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-CCceEEEEeC
Confidence 567889999999999999999996 356999999999 9999999876554 699999999999887 8999999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+++ .......+++++.++|||||.++.
T Consensus 118 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 146 (234)
T 3dtn_A 118 SIHHL-EDEDKKELYKRSYSILKESGIFIN 146 (234)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 54444 223334699999999999999984
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-15 Score=141.01 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=91.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHH-------HHcCCC-CcEEEEEccee
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIV-------EANGFS-NVITVLKGKIE 181 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~-------~~~~~~-~~i~~~~~d~~ 181 (379)
..+.....+.++.+|||||||+|.+++.+|. .|..+|+|||+++ ++++|++++ ..+|+. ++|+|+++|+.
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 3344556678999999999999999999987 5777899999999 999998765 345663 67999999999
Q ss_pred eccCCC--CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 182 EIELPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 182 ~~~~~~--~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++++++ ..||+|+++.+. +.+++...|.++.+.|||||+||..
T Consensus 243 ~lp~~d~~~~aDVVf~Nn~~----F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 243 SEEWRERIANTSVIFVNNFA----FGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp SHHHHHHHHTCSEEEECCTT----CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCccccccCCccEEEEcccc----cCchHHHHHHHHHHcCCCCcEEEEe
Confidence 887642 479999987542 2367788889999999999999944
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=135.39 Aligned_cols=114 Identities=26% Similarity=0.306 Sum_probs=93.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++... .+++++++|+.++++++++
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTTC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCCc
Confidence 344555566778899999999999999999995234999999999 999999876544 4699999999998887799
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
||+|++..+.+++ ...++..++.++.++|||||.++..
T Consensus 121 fD~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (266)
T 3ujc_A 121 FDLIYSRDAILAL-SLENKNKLFQKCYKWLKPTGTLLIT 158 (266)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeHHHHHHhc-ChHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999986543322 1278889999999999999999853
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-15 Score=138.54 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEcce------eecc--CC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKI------EEIE--LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~------~~~~--~~ 186 (379)
.++.+|||||||+|..+..+++.+..+|+|+|+|+ |++.|+++....+... ++++++.|+ .+++ ++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35789999999999876666666666999999999 9999999987765421 267888887 4332 34
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++||+|+|..+.+++........+++++.++|||||+++..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~ 168 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLIT 168 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 579999998755444333335689999999999999999854
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=132.51 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~ 195 (379)
.++.+|||||||+|.+++.++. .+..+|+|+|+|+ |++.|++++..++++ +++++++|+.+++.+ .++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEE
Confidence 4678999999999999999997 3456999999999 999999999999985 499999999988753 478999998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+ ..+..++..+.++|+|||.++.
T Consensus 148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 148 RAV-------ARLSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp ECC-------SCHHHHHHHHGGGEEEEEEEEE
T ss_pred ecc-------CCHHHHHHHHHHhcCCCCEEEE
Confidence 653 4578999999999999999984
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=145.13 Aligned_cols=113 Identities=17% Similarity=0.056 Sum_probs=92.5
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
....++.+|||+|||+|..+..+++.+ ..+|+|+|+++ +++.+++++..+|+. ++++++|+.+++ ++.++||+|
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 319 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRI 319 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEE
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEE
Confidence 446788999999999999999999953 36999999999 999999999999973 789999998775 444789999
Q ss_pred EEecCccccCC---hhh----------------HHHHHHHHHhcccCCEEEEecCCce
Q 016992 194 ISEWMGYFLLF---ENM----------------LNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 194 v~~~~~~~l~~---~~~----------------~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
++++++++... .++ ...++..+.++|||||++++++|++
T Consensus 320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99876654321 111 1478999999999999999877765
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-15 Score=130.88 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
.++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++...++ .+++.++++|+..+++++++||+|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 5788999999999999999999865 999999999 99999999887776 24689999999998887789999999
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.+.+........+++++.++|+|||.++.
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 139 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 76655554444455899999999999999984
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-15 Score=133.33 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~ 195 (379)
.++.+|||||||+|.+++.++.. +..+|+++|+++ +++.|++++..+++.+ |+++++|++++... .++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEE
Confidence 56789999999999999999985 667999999999 9999999999999964 99999999988642 378999999
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+ ..+..++..+.++|||||+++.
T Consensus 158 ~a~-------~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 158 RAV-------APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp ESS-------CCHHHHHHHHGGGEEEEEEEEE
T ss_pred CCc-------CCHHHHHHHHHHHcCCCeEEEE
Confidence 754 3467899999999999999883
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=129.19 Aligned_cols=118 Identities=11% Similarity=0.149 Sum_probs=94.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeec
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI 183 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~ 183 (379)
..+...+.......++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|+++++.+|+. ++|+++++|+.++
T Consensus 42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~ 121 (221)
T 3dr5_A 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV 121 (221)
T ss_dssp HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH
Confidence 344455554444344569999999999999999984 3 46999999999 999999999999997 7899999999876
Q ss_pred c--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 184 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 184 ~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
. ++.++||+|+++.. ......++..+.++|||||+++.....
T Consensus 122 l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 122 MSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp GGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3 33589999998642 144567899999999999999965543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=134.39 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.|++++..+++ +++++++|+.+++. .++||+|++..+.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVF 194 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccch
Confidence 4788999999999999999999876 999999999 99999999999887 69999999999877 4899999998764
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++ .......++.++.++|+|||.++
T Consensus 195 ~~~-~~~~~~~~l~~~~~~LkpgG~l~ 220 (286)
T 3m70_A 195 MFL-NRERVPSIIKNMKEHTNVGGYNL 220 (286)
T ss_dssp GGS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 443 34567899999999999999977
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=135.25 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=95.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
...+.+.......++.+|||||||+|.++..+++. |. +|+|+|+|+ +++.|++++...++.++++++++|+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence 34445666666778999999999999999999985 66 999999999 99999999999888778999999998774
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++||+|++..+..++ ...++..++.++.++|||||.++.
T Consensus 154 -~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp -CCCSEEEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred -CCcCEEEEeChHHhc-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 789999987543333 125788999999999999999984
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=138.07 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCC-----------------------------
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGF----------------------------- 169 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~----------------------------- 169 (379)
.++++|||||||+|.+++.+++. +..+|+|||+++ |++.|++++...+.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 47889999999999999999995 667999999999 99999998776542
Q ss_pred ----------------------------CCcEEEEEcceeecc-----CCCCceeEEEEecCccccC---ChhhHHHHHH
Q 016992 170 ----------------------------SNVITVLKGKIEEIE-----LPVTKVDIIISEWMGYFLL---FENMLNTVLY 213 (379)
Q Consensus 170 ----------------------------~~~i~~~~~d~~~~~-----~~~~~~D~Iv~~~~~~~l~---~~~~~~~~l~ 213 (379)
+.+|+++++|+.... +..++||+|+|..+..+++ +...+..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 257999999998654 3458999999976543332 3447789999
Q ss_pred HHHhcccCCEEEEe
Q 016992 214 ARDKWLVDDGIVLP 227 (379)
Q Consensus 214 ~~~~~LkpgG~lip 227 (379)
.+.++|+|||+|+.
T Consensus 205 ~~~~~LkpGG~lil 218 (292)
T 3g07_A 205 RIYRHLRPGGILVL 218 (292)
T ss_dssp HHHHHEEEEEEEEE
T ss_pred HHHHHhCCCcEEEE
Confidence 99999999999984
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=126.07 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-ccCCCC
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVT 188 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 188 (379)
..+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+++++++ ++++|+.+ ++...+
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 33444455678889999999999999999985 457999999999 999999999999987678 88888754 322227
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+||+|++... +.+ ..+++.+.++|||||.++.
T Consensus 94 ~~D~i~~~~~---~~~----~~~l~~~~~~L~~gG~l~~ 125 (178)
T 3hm2_A 94 NPDVIFIGGG---LTA----PGVFAAAWKRLPVGGRLVA 125 (178)
T ss_dssp CCSEEEECC----TTC----TTHHHHHHHTCCTTCEEEE
T ss_pred CCCEEEECCc---ccH----HHHHHHHHHhcCCCCEEEE
Confidence 8999997543 222 5788899999999999984
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=129.94 Aligned_cols=112 Identities=23% Similarity=0.316 Sum_probs=92.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+.+.+... ..++.+|||+|||+|.++..+++. .+|+|+|+|+ +++.|++++...+ .+++++++|+.+++++
T Consensus 22 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 22 EWVAWVLEQ--VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP- 94 (243)
T ss_dssp HHHHHHHHH--SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-
T ss_pred HHHHHHHHH--cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-
Confidence 445555543 346789999999999999999887 5999999999 9999999998876 3589999999998776
Q ss_pred CceeEEEEec-CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++||+|++.. +.+++.....+..+++++.++|+|||.++.
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 8999999853 334444456788999999999999999985
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=128.53 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCCchHH-HHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILS-LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~-~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||+|||+|.++ ..+++.+. +|+|+|+|+ +++.|++++...+ .+++++++|+.++++++++||+|++..
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~ 97 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYG 97 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcC
Confidence 356789999999999874 44455554 999999999 9999999988776 358999999999887778999999865
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+++ ...++..++.++.++|||||.++..
T Consensus 98 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 98 TIFHM-RKNDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43333 2367889999999999999999853
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=130.88 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=89.9
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||||||+|.++..+++.|..+|+|+|+++ +++.|+++... .+++++++|+.+++++.++||+
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceE
Confidence 344445567889999999999999999998766999999999 99999886543 3599999999998877789999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++..+ +.+..++..++.++.++|+|||.++..
T Consensus 111 v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~~~ 143 (243)
T 3bkw_A 111 AYSSLA---LHYVEDVARLFRTVHQALSPGGHFVFS 143 (243)
T ss_dssp EEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecc---ccccchHHHHHHHHHHhcCcCcEEEEE
Confidence 998754 333357889999999999999999853
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-15 Score=132.22 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++... +++++++|+.++ .++++||+|++..+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~- 112 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHV- 112 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESC-
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhH-
Confidence 5678999999999999999998865 899999999 99999987542 599999999988 45589999998755
Q ss_pred cccCChhhHHHHHHHHH-hcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARD-KWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~-~~LkpgG~lip 227 (379)
+.+..++..+++++. ++|||||.++.
T Consensus 113 --l~~~~~~~~~l~~~~~~~LkpgG~l~i 139 (250)
T 2p7i_A 113 --LEHIDDPVALLKRINDDWLAEGGRLFL 139 (250)
T ss_dssp --GGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred --HHhhcCHHHHHHHHHHHhcCCCCEEEE
Confidence 444467789999999 99999999985
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-15 Score=131.77 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||||||+|.++..+++.+..+|+|+|+++ +++.|++++...+. .+++++++|+.+++++.++||+|++..+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 6889999999999999998887667999999999 99999998876642 469999999999887767899999876533
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++. ...+..++.++.++|||||+++.
T Consensus 158 ~~~-~~~~~~~l~~~~~~LkpgG~l~i 183 (241)
T 2ex4_A 158 HLT-DQHLAEFLRRCKGSLRPNGIIVI 183 (241)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHhcCCCeEEEE
Confidence 332 23356899999999999999985
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=123.23 Aligned_cols=110 Identities=21% Similarity=0.277 Sum_probs=90.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||+|||+|.++..+++. ..+|+|+|+++ +++.|++++..+++.+ +++++++|+.+.. +.++||
T Consensus 44 l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D 121 (194)
T 1dus_A 44 LVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-KDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-TTSCEE
T ss_pred HHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc-ccCCce
Confidence 333345568889999999999999999988 55999999999 9999999999988854 5999999998743 347899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.+.+ ........++..+.++|+|||.++.
T Consensus 122 ~v~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~~ 155 (194)
T 1dus_A 122 KIITNPPIR--AGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp EEEECCCST--TCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCCcc--cchhHHHHHHHHHHHHcCCCCEEEE
Confidence 999976422 1235678999999999999999984
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-15 Score=132.79 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|+++. ...+++++++|+.++++++++||+|++..+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 125 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINS- 125 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESC-
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcCh-
Confidence 5788999999999999999999865 999999999 999998764 225699999999999887799999998654
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..++..++.++.++|+|||.++..
T Consensus 126 --l~~~~~~~~~l~~~~~~L~pgG~l~i~ 152 (242)
T 3l8d_A 126 --LEWTEEPLRALNEIKRVLKSDGYACIA 152 (242)
T ss_dssp --TTSSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred --HhhccCHHHHHHHHHHHhCCCeEEEEE
Confidence 444477789999999999999999843
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-15 Score=137.58 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...++. .+++++++|+.+++++ ++||+|++...
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD-KRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS-CCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC-CCcCEEEECCc
Confidence 344999999999999999999865 899999999 999999999876642 4699999999998874 89999986422
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
............+++++.++|||||.++..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 222333346789999999999999999853
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=132.82 Aligned_cols=109 Identities=25% Similarity=0.225 Sum_probs=89.0
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHH---cCCCCcEEEEEcceeecc-------C
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEA---NGFSNVITVLKGKIEEIE-------L 185 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~-------~ 185 (379)
....++.+|||+|||+|.+++.+++.. ..+|+|||+++ +++.|++++.. +++.++++++++|+.++. +
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 445678899999999999999999863 46999999999 99999999998 888778999999998872 4
Q ss_pred CCCceeEEEEecCccccCC----------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLF----------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~----------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.++||+|+++++ |+... ...+..++..+.++|||||.++.
T Consensus 112 ~~~~fD~Vv~nPP-y~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 112 PDEHFHHVIMNPP-YNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp CTTCEEEEEECCC-C---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCcCEEEECCC-CcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 4578999999864 33221 12367889999999999999873
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=125.55 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~ 196 (379)
.++.+|||||||+|.++..+++. +..+|+|+|+++ +++.|++++..+++ .+++++++|+.+++ ++.++||+|++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 35789999999999999999985 456999999999 99999999999998 57999999999876 666789999987
Q ss_pred cCccccC--Ch---hhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip 227 (379)
....... ++ .....++..+.++|+|||.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence 5422111 00 0236789999999999999884
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=126.24 Aligned_cols=94 Identities=22% Similarity=0.241 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||+|||+|.++..+ +..+|+|+|+++ +++.|+++. .++.++++|+.++++++++||+|++..+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 104 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTT-- 104 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESC--
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcCh--
Confidence 7889999999999998877 555999999999 999998875 3488999999998887789999998654
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+..++..++.++.++|||||.++.
T Consensus 105 -l~~~~~~~~~l~~~~~~L~pgG~l~i 130 (211)
T 2gs9_A 105 -LEFVEDVERVLLEARRVLRPGGALVV 130 (211)
T ss_dssp -TTTCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred -hhhcCCHHHHHHHHHHHcCCCCEEEE
Confidence 34446788999999999999999984
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=126.80 Aligned_cols=107 Identities=24% Similarity=0.232 Sum_probs=86.6
Q ss_pred CCCCCCEEEEEcCC-CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeEEEE
Q 016992 119 FLFKDKVVLDVGAG-TGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIIS 195 (379)
Q Consensus 119 ~~~~~~~VLDlGcG-~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~ 195 (379)
...++.+|||+||| +|.++..+++.+..+|+|+|+++ +++.|++++..+++ +++++++|+..+ ++++++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence 34688999999999 99999999997345999999999 99999999999987 599999997544 244589999999
Q ss_pred ecCcccc----------------CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFL----------------LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l----------------~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++.+.. .+...+..++..+.++|||||+++.
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 8642211 1123357899999999999999884
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=124.46 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++ +|||+|||+|.++..+++.|. +|+|+|+++ +++.|++++...+. ++.++++|+.++++++++||+|++...
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~- 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFC- 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEECC-
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEhh-
Confidence 456 999999999999999998865 999999999 99999999988776 599999999998877789999998532
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.........++.++.++|||||.++.
T Consensus 104 --~~~~~~~~~~l~~~~~~L~pgG~l~~ 129 (202)
T 2kw5_A 104 --HLPSSLRQQLYPKVYQGLKPGGVFIL 129 (202)
T ss_dssp --CCCHHHHHHHHHHHHTTCCSSEEEEE
T ss_pred --cCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 22446788999999999999999984
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=131.82 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=90.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|++++...+. +++++++|+.+++++ ++||+|+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~v~ 94 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAI 94 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcC-CCeeEEE
Confidence 34568899999999999999999985 3 36999999999 99999999887664 699999999998875 7999999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+..+.. +..+...++.++.++|||||+++....
T Consensus 95 ~~~~l~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 95 CHAFLL---HMTTPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp EESCGG---GCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECChhh---cCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence 976533 346778999999999999999985443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=133.28 Aligned_cols=138 Identities=11% Similarity=-0.028 Sum_probs=100.7
Q ss_pred ccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHH
Q 016992 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MAN 158 (379)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~ 158 (379)
.....|..++...+....|+ +...+...+|.+|||+|||+|..+..+++. +.++|+|+|+++ +++
T Consensus 74 ~~~~~~~~G~~~~Qd~~s~l------------~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~ 141 (309)
T 2b9e_A 74 HEHPLYRAGHLILQDRASCL------------PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLA 141 (309)
T ss_dssp TTSHHHHTTSEEECCTGGGH------------HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred ccChHHHCCeEEEECHHHHH------------HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 33345666665544444443 222345678999999999999999999984 457999999999 999
Q ss_pred HHHHHHHHcCCCCcEEEEEcceeeccCCC---CceeEEEEecCccccCCh--------------hh-------HHHHHHH
Q 016992 159 MAKQIVEANGFSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFE--------------NM-------LNTVLYA 214 (379)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~Iv~~~~~~~l~~~--------------~~-------~~~~l~~ 214 (379)
.++++++++|+. +++++++|+.++.... .+||.|++++++++.... .. ...+|..
T Consensus 142 ~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~ 220 (309)
T 2b9e_A 142 SMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH 220 (309)
T ss_dssp HHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-eEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHH
Confidence 999999999984 6999999998875432 479999998765443110 01 1246777
Q ss_pred HHhcccCCEEEEecCCceE
Q 016992 215 RDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 215 ~~~~LkpgG~lip~~~~~~ 233 (379)
..++|+ ||++++++|++.
T Consensus 221 a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 221 ALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp HTTCTT-CCEEEEEESCCC
T ss_pred HHhccC-CCEEEEECCCCC
Confidence 778887 999998888763
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=127.71 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-c--CCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E--LPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~Iv~~ 196 (379)
++.+|||||||+|.++..+|+. +...|+|||+++ +++.|++++..+++. +++++++|+.++ + +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 6779999999999999999985 456899999999 999999999999985 599999999885 3 566899999986
Q ss_pred cCccccCChhh-----HHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENM-----LNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~lip 227 (379)
........... .+.++..+.++|||||.++.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i 148 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHM 148 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE
Confidence 33221111010 13589999999999999884
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=127.43 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-c-CC----CCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E-LP----VTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~----~~~~D 191 (379)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++..+++.++|+++++|+.+. + +. .++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999984 2 46999999999 9999999999999988899999998664 2 22 16899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+|+++.... +......++..+ ++|||||+++...+.
T Consensus 137 ~V~~d~~~~---~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKD---RYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGG---GHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcc---cchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 999875322 223334566666 999999999976544
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=130.04 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=86.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...+...+++++++|+.+++.. ++||+|++..+.+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT-ELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS-SCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC-CCeeEEEEChhhh
Confidence 445999999999999999987654 899999999 9999999988766557799999999987744 7999999876544
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+ .......++.++.++|||||.++.
T Consensus 144 ~~-~~~~~~~~l~~~~~~LkpgG~l~~ 169 (235)
T 3lcc_A 144 AI-EPEMRPAWAKSMYELLKPDGELIT 169 (235)
T ss_dssp TS-CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHHCCCCcEEEE
Confidence 33 234788999999999999999984
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=128.33 Aligned_cols=98 Identities=27% Similarity=0.327 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++. .+++++++|+.+++++ ++||+|++..+.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l 116 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYAF 116 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESCG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcch
Confidence 4788999999999999999999865 999999999 9999998754 3589999999999887 899999997654
Q ss_pred cccCChhhHHH--HHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNT--VLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~--~l~~~~~~LkpgG~lip~ 228 (379)
+++ ..... ++.++.++|||||.++..
T Consensus 117 ~~~---~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 117 HHL---TDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp GGS---CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcC---ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 433 44444 999999999999999853
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=127.75 Aligned_cols=102 Identities=23% Similarity=0.279 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~Iv~~ 196 (379)
.++.+|||||||+|..+..+++. +..+|+++|+++ +++.|+++++..++.++++++++|+.+... ..++||+|+++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 46789999999999999999984 357999999999 999999999999998789999999987522 14889999986
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.. ......++..+.++|||||+++..
T Consensus 150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 150 AA------KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TT------SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred Cc------HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 42 144678999999999999999853
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=128.95 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCC--CCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELP--VTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~~D~Iv 194 (379)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++|+++++|+.+. +.. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 46789999999999999999985 3 57999999999 9999999999999988899999999773 321 24899999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
++.. ......++..+.++|||||+++...
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 142 IDAD------KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp ECSC------GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ECCc------hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 8642 2456788999999999999998543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=126.21 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..+|.+|||||||+|.+++.+++.+ +.+|+|+|+++ +++.|+++++.+|+.++|+++++|..+...+.++||+|+...
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 4578899999999999999999975 56899999999 999999999999998899999999988765534799988644
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+. ..+..++......|+++|.||
T Consensus 99 mGg-----~lI~~IL~~~~~~l~~~~~lI 122 (230)
T 3lec_A 99 MGG-----RLIADILNNDIDKLQHVKTLV 122 (230)
T ss_dssp ECH-----HHHHHHHHHTGGGGTTCCEEE
T ss_pred Cch-----HHHHHHHHHHHHHhCcCCEEE
Confidence 431 457788999999999999998
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=140.88 Aligned_cols=136 Identities=17% Similarity=0.032 Sum_probs=105.0
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAK 161 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~ 161 (379)
..|..++...+....|+ +...+...+|.+|||+|||+|..+..+|+. +.++|+|+|+++ +++.++
T Consensus 80 ~~~~~G~~~vQd~ss~l------------~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~ 147 (456)
T 3m4x_A 80 FLHQAGYEYSQEPSAMI------------VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS 147 (456)
T ss_dssp HHHHTTSCEECCTTTHH------------HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHH
T ss_pred hHHhCCcEEEECHHHHH------------HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 45666665555444443 223345678999999999999999999984 346999999999 999999
Q ss_pred HHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEecCccccCC---hh----------------hHHHHHHHHHhcccC
Q 016992 162 QIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFLLF---EN----------------MLNTVLYARDKWLVD 221 (379)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l~~---~~----------------~~~~~l~~~~~~Lkp 221 (379)
++++++|+. +|.++++|+.++.. ..++||+|++++++++... .+ ....++..+.++|||
T Consensus 148 ~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 226 (456)
T 3m4x_A 148 ENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN 226 (456)
T ss_dssp HHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred HHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999995 59999999988751 2378999999987654321 11 113788999999999
Q ss_pred CEEEEecCCceE
Q 016992 222 DGIVLPDKASLY 233 (379)
Q Consensus 222 gG~lip~~~~~~ 233 (379)
||.|++++|++.
T Consensus 227 GG~LvYsTCs~~ 238 (456)
T 3m4x_A 227 KGQLIYSTCTFA 238 (456)
T ss_dssp EEEEEEEESCCC
T ss_pred CcEEEEEEeecc
Confidence 999999988764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=131.16 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec-C
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~-~ 198 (379)
.++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++. +++++++|+.++++ +++||+|++.. +
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 120 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-GRRFSAVTCMFSS 120 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-SCCEEEEEECTTG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-cCCcCEEEEcCch
Confidence 4678999999999999999999865 999999999 9999998743 58999999999877 48999999864 4
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..++.....+..+++++.++|||||.++..
T Consensus 121 l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 121 IGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 444444457789999999999999999965
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=132.94 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..+|.+|||+|||+|.+++.+|+.|+++|+|+|+++ +++.++++++.|++.++|+++++|+.++... +.||.|+++++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~-~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc-cCCCEEEECCC
Confidence 468999999999999999999999888999999999 9999999999999999999999999988654 88999998865
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+. ..++..+.++||+||++.
T Consensus 202 ~~~-------~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 202 VRT-------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp SSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CcH-------HHHHHHHHHHcCCCCEEE
Confidence 332 234556668899999886
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=136.03 Aligned_cols=105 Identities=23% Similarity=0.153 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeeccCC----CCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELP----VTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~----~~~~D~Iv 194 (379)
.++.+|||+|||+|.+++.+++.|+ +|++||+|+ +++.|++++..+++.+ +++++++|+.++... .++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4678999999999999999999887 999999999 9999999999999865 599999999876421 36899999
Q ss_pred EecCccccC-------ChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++++.+... ....+..++..+.++|+|||.++
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ll 269 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 269 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEE
Confidence 987644322 23456788999999999999966
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=124.10 Aligned_cols=99 Identities=29% Similarity=0.402 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++.+ ++++++|+.+.. .++||+|++..+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~fD~i~~~~~ 134 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--DGKFDLIVANIL 134 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--CSCEEEEEEESC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--CCCceEEEECCc
Confidence 357889999999999999999998778999999999 9999999999999865 999999997753 489999998754
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. ..+..++..+.++|+|||.++.
T Consensus 135 ~------~~~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 135 A------EILLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp H------HHHHHHGGGSGGGEEEEEEEEE
T ss_pred H------HHHHHHHHHHHHhcCCCCEEEE
Confidence 2 3457889999999999999984
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=121.62 Aligned_cols=106 Identities=24% Similarity=0.273 Sum_probs=88.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-Ccee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D 191 (379)
+.......++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.|++++..+++..++.++++|+.+. ++. ++||
T Consensus 25 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D 102 (192)
T 1l3i_A 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCKIPDID 102 (192)
T ss_dssp HHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTTSCCEE
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-cccCCCCC
Confidence 3333456788999999999999999999977 7999999999 9999999999998866799999998872 232 5899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++..+ + ..+..++..+.++|+|||.++.
T Consensus 103 ~v~~~~~---~---~~~~~~l~~~~~~l~~gG~l~~ 132 (192)
T 1l3i_A 103 IAVVGGS---G---GELQEILRIIKDKLKPGGRIIV 132 (192)
T ss_dssp EEEESCC---T---TCHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEECCc---h---HHHHHHHHHHHHhcCCCcEEEE
Confidence 9998643 2 3457899999999999999984
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=123.42 Aligned_cols=104 Identities=19% Similarity=0.123 Sum_probs=85.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.|++++..+++. +++++++|+.+...+.++||+
T Consensus 69 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~ 146 (210)
T 3lbf_A 69 MTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDA 146 (210)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccE
Confidence 3344556789999999999999999999984 5999999999 999999999999885 699999999886655578999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++......+. ..+.++|||||+++..
T Consensus 147 i~~~~~~~~~~---------~~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 147 IIVTAAPPEIP---------TALMTQLDEGGILVLP 173 (210)
T ss_dssp EEESSBCSSCC---------THHHHTEEEEEEEEEE
T ss_pred EEEccchhhhh---------HHHHHhcccCcEEEEE
Confidence 99865433322 2467899999998854
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=137.06 Aligned_cols=106 Identities=27% Similarity=0.363 Sum_probs=89.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHc-----C-CC-CcEEEEEcceeec------
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEAN-----G-FS-NVITVLKGKIEEI------ 183 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~-----~-~~-~~i~~~~~d~~~~------ 183 (379)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+ | +. .+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999984 346999999999 999999998765 3 22 4799999999987
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++++++||+|++..+.+. ..++..++.++.++|||||+++..
T Consensus 161 ~~~~~~fD~V~~~~~l~~---~~d~~~~l~~~~r~LkpgG~l~i~ 202 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNL---STNKLALFKEIHRVLRDGGELYFS 202 (383)
T ss_dssp CCCTTCEEEEEEESCGGG---CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhc---CCCHHHHHHHHHHHcCCCCEEEEE
Confidence 777789999999865443 367889999999999999999853
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-14 Score=124.12 Aligned_cols=100 Identities=25% Similarity=0.243 Sum_probs=79.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----cCCCCceeE
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVDI 192 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~ 192 (379)
...+|.+|||+|||+|.++..+++. |..+|+|+|+|+ |++.+.+.++.. .++.++.+|+... ++. ++||+
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD~ 129 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVDL 129 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-cceeE
Confidence 4568899999999999999999985 446999999999 998777766653 3589999998774 344 78999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+++.. .......++.++.++|||||.++.
T Consensus 130 V~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i 159 (210)
T 1nt2_A 130 IYQDIA-----QKNQIEILKANAEFFLKEKGEVVI 159 (210)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecc-----ChhHHHHHHHHHHHHhCCCCEEEE
Confidence 998731 223445668999999999999984
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=123.45 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+.+...+.... .+..+|||||||+|.+++.++.. +..+|+|+|+|+ |++.+++++..+|...++++ .|.....
T Consensus 36 ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~ 111 (200)
T 3fzg_A 36 LNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV 111 (200)
T ss_dssp HHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH
T ss_pred HHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC
Confidence 444555555433 55779999999999999999884 445999999999 99999999999999767777 5555444
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .++||+|++.-+.+.+ .+.+..+..+.+.|+|||++|
T Consensus 112 ~-~~~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 112 Y-KGTYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp T-TSEEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEE
T ss_pred C-CCCcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEE
Confidence 3 4889999987654444 455556668899999999998
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=126.42 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..+|.+|||||||+|.+++.+++.+ ..+|+|+|+++ +++.|+++++.+|+.++|+++++|..+...+..+||+|+...
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 4578899999999999999999975 56899999999 999999999999998889999999988765434699988644
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++- ..+..++......|+++|+||.
T Consensus 99 mGg-----~lI~~IL~~~~~~L~~~~~lIl 123 (244)
T 3gnl_A 99 MGG-----TLIRTILEEGAAKLAGVTKLIL 123 (244)
T ss_dssp ECH-----HHHHHHHHHTGGGGTTCCEEEE
T ss_pred Cch-----HHHHHHHHHHHHHhCCCCEEEE
Confidence 321 4577889999999999999983
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=123.70 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|++ .+. .+++++++|+.++ ++.++||+|++..+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~ 116 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHW 116 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEech
Confidence 56778999999999999999999865 999999999 9999987 454 4699999999988 56689999999765
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+++. ......+++++.++|||||.++..
T Consensus 117 l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~ 145 (218)
T 3ou2_A 117 LAHVP-DDRFEAFWESVRSAVAPGGVVEFV 145 (218)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 44432 233589999999999999999854
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=124.81 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..+|.+|||||||+|.+++.+++.+ ..+|+|+|+++ +++.|+++++.+|+.++|+++++|..+.-.+..+||+|+...
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 4578899999999999999999975 56899999999 999999999999998889999999865322213699888644
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++ -..+..++......|+++|++|.
T Consensus 93 ~G-----g~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 93 MG-----GRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp EC-----HHHHHHHHHHTGGGCTTCCEEEE
T ss_pred CC-----hHHHHHHHHHHHHHhCCCCEEEE
Confidence 32 13468899999999999999983
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=124.54 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~ 196 (379)
.++.+|||||||+|.++..+|+. +..+|+|||+|+ +++.|++++..++++ +++++++|+.+++ +++++||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 35779999999999999999985 456999999999 999999999999884 5999999999875 556789999875
Q ss_pred cCccccC--Ch---hhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip 227 (379)
....... +. -....++..+.++|||||.++.
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence 4221110 00 0136789999999999999984
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=124.83 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++.+ ++++++|+.++. +.++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-ccCCcCEEEEecc-
Confidence 5789999999999999999984 557999999999 9999999999999865 999999998876 3478999997532
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+..++..+.++|+|||.++..
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 34678999999999999999853
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=128.13 Aligned_cols=107 Identities=22% Similarity=0.361 Sum_probs=89.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+.+.+... ..++.+|||+|||+|.+++.+++.|+ +|+|+|+++ +++.|++++..+++. ++++++|+.+. ++.
T Consensus 109 ~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~ 182 (254)
T 2nxc_A 109 LALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPF 182 (254)
T ss_dssp HHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGG
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcC
Confidence 444555543 46788999999999999999999887 999999999 999999999999885 89999998774 334
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++||+|+++.+. ..+..++..+.++|+|||+++.
T Consensus 183 ~~fD~Vv~n~~~------~~~~~~l~~~~~~LkpgG~lil 216 (254)
T 2nxc_A 183 GPFDLLVANLYA------ELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp CCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECCcH------HHHHHHHHHHHHHcCCCCEEEE
Confidence 789999987532 3467889999999999999984
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=127.91 Aligned_cols=106 Identities=24% Similarity=0.324 Sum_probs=90.4
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|+++++.++++++++++++|+.+. ++.++
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEEN 162 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCS
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCC
Confidence 3444566788999999999999999999996 4 57999999999 9999999999999987799999999876 55578
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|++++. ....++.++.++|+|||.++.
T Consensus 163 ~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~ 192 (255)
T 3mb5_A 163 VDHVILDLP--------QPERVVEHAAKALKPGGFFVA 192 (255)
T ss_dssp EEEEEECSS--------CGGGGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECCC--------CHHHHHHHHHHHcCCCCEEEE
Confidence 999998642 335678889999999999984
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-14 Score=133.57 Aligned_cols=118 Identities=21% Similarity=0.222 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcc--CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 107 TKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 107 ~~~~~~~i~~~~--~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
...+.+.+.... ...++.+|||+|||+|.++..+++.+. +|+++|+++ +++.|++++..+++. ++++++|+.+.
T Consensus 216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~ 292 (381)
T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEA 292 (381)
T ss_dssp HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTT
T ss_pred HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhc
Confidence 334444454332 235788999999999999999999865 999999999 999999999999874 89999999988
Q ss_pred cCCCCceeEEEEecCcccc--CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.++||+|+++++.+.. ........++..+.++|||||.++.
T Consensus 293 ~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 293 LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 7656899999998753321 1135678999999999999999984
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=127.48 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (379)
...++.+.+.+..... .++.+|||+|||+|.++..+++ .+..+|+|+|+|+ +++.|++++..++++ +++++++|+.
T Consensus 92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~ 169 (276)
T 2b3t_A 92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF 169 (276)
T ss_dssp CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence 3345556666655443 5678999999999999999997 4567999999999 999999999999885 6999999998
Q ss_pred eccCCCCceeEEEEecCcccc----------CCh------------hhHHHHHHHHHhcccCCEEEEec
Q 016992 182 EIELPVTKVDIIISEWMGYFL----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+. ++.++||+|+++++.... .++ ..+..++..+.++|+|||+++..
T Consensus 170 ~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 170 SA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp GG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 75 334789999998642111 011 34578899999999999999854
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=130.78 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC------CCCcEEEEEcceeecc----CC--C
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG------FSNVITVLKGKIEEIE----LP--V 187 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~------~~~~i~~~~~d~~~~~----~~--~ 187 (379)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|+++....+ ...+++++++|+.+++ ++ .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 46789999999999999999987667999999999 9999999887642 2246999999999875 43 3
Q ss_pred CceeEEEEecCcccc-CChhhHHHHHHHHHhcccCCEEEEec
Q 016992 188 TKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++||+|++..+.+++ .+...+..++.++.++|||||.++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT 154 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 589999997654444 45567789999999999999999843
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-14 Score=123.59 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++ ++.++++|+.+++ ++++||+|++..+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~ 111 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHAC 111 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCc
Confidence 45788999999999999999999865 999999999 999999876 2678889999888 5589999998754
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+++. ...+..+++++.++|||||+++..
T Consensus 112 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 112 LLHVP-RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 33332 237789999999999999999853
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=124.25 Aligned_cols=98 Identities=23% Similarity=0.271 Sum_probs=83.9
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
+.+|||+|||+|.++..+++.|. +|+|+|+++ |++.|+++. .+++++++|+.++++++++||+|++..+.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 78999999999999999999866 999999999 999998862 3589999999999887789999999755333
Q ss_pred cCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+. ..++..++.++.++|||||.++..
T Consensus 115 ~~-~~~~~~~l~~~~~~L~pgG~l~i~ 140 (203)
T 3h2b_A 115 MG-PGELPDALVALRMAVEDGGGLLMS 140 (203)
T ss_dssp CC-TTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32 247889999999999999999843
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-14 Score=127.16 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=87.1
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.++++ . .+++++++|+.+++ ++++||
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~-~~~~fD 97 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L-PNTNFGKADLATWK-PAQKAD 97 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTTCC-CSSCEE
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C-CCcEEEECChhhcC-ccCCcC
Confidence 444455667889999999999999999985 445999999999 99999887 1 45899999999887 568999
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|++..+.++ ..++..++.++.++|||||.++..
T Consensus 98 ~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 98 LLYANAVFQW---VPDHLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp EEEEESCGGG---STTHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEeCchhh---CCCHHHHHHHHHHhcCCCeEEEEE
Confidence 9998765333 367889999999999999999853
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-14 Score=118.96 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=86.2
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++ +..+|+|+|+++ +++.|++++..+++ .+++++++|+.+ +++.++||+
T Consensus 27 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~D~ 103 (183)
T 2yxd_A 27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VLDKLEFNK 103 (183)
T ss_dssp HHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HGGGCCCSE
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cccCCCCcE
Confidence 33334556888999999999999999998 567999999999 99999999999988 469999999988 555578999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++..+ ..+..++..+.++ |||.++..
T Consensus 104 i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 104 AFIGGT-------KNIEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp EEECSC-------SCHHHHHHHHHHT--TCCEEEEE
T ss_pred EEECCc-------ccHHHHHHHHhhC--CCCEEEEE
Confidence 998754 4567888888887 99998843
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-14 Score=135.36 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeeccC----CCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL----PVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~~D~Iv 194 (379)
.++.+|||+|||+|.+++.+|+.|+++|+|+|+|+ +++.|+++++.+++.+ +++++++|+.+... ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 57889999999999999999998888999999999 9999999999999965 79999999977421 135899999
Q ss_pred EecCccc----c--CChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 195 SEWMGYF----L--LFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 195 ~~~~~~~----l--~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
++++.+. . .....+..++..+.++|+|||.++.+.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9876432 1 112345567888899999999998553
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=131.33 Aligned_cols=105 Identities=31% Similarity=0.310 Sum_probs=87.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+|+ |++.|+++. +++++++|++++++++++
T Consensus 23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~~ 94 (261)
T 3ege_A 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDKS 94 (261)
T ss_dssp HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTTC
T ss_pred HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCCC
Confidence 3445544556788999999999999999999865 5999999999 999886543 599999999999887789
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|++..+.+ +..++..+++++.++|| ||.++.
T Consensus 95 fD~v~~~~~l~---~~~~~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 95 VDGVISILAIH---HFSHLEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp BSEEEEESCGG---GCSSHHHHHHHHHHHBC-SSCEEE
T ss_pred EeEEEEcchHh---hccCHHHHHHHHHHHhC-CcEEEE
Confidence 99999976533 33778899999999999 997663
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-15 Score=134.71 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.|++++..+++.++++++++|+.+++. .++||+|+++++.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-FLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG-GCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc-cCCCCEEEECCCc
Confidence 478899999999999999999987 6999999999 999999999999986689999999998874 4799999998764
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.. ......+.++.++|+|||.++..
T Consensus 155 ~~~---~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GGP---DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSG---GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCc---chhhhHHHHHHhhcCCcceeHHH
Confidence 433 33344566788999999997744
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=132.84 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=89.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCC--cEEEEEcceeeccCCCCc
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN--VITVLKGKIEEIELPVTK 189 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~ 189 (379)
+.......++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+ +++.|++++..+++.+ +++++.+|+.+. ++.++
T Consensus 214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~~~~~ 292 (375)
T 4dcm_A 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFR 292 (375)
T ss_dssp HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-CCTTC
T ss_pred HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-CCCCC
Confidence 4444555667899999999999999999964 57999999999 9999999999998753 588999999874 45579
Q ss_pred eeEEEEecCcccc--CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|+++++.+.. ........++..+.++|||||.++.
T Consensus 293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 9999998753321 1123345789999999999999984
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-14 Score=128.26 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=81.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----- 185 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 185 (379)
+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++..+ +++.++.++..
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKE 106 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGG
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccc
Confidence 3345556678899999999999999999999875 999999999 999999987643 23344444333
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..++||+|++..+.+.+ .......++..+.++| |||+++.+
T Consensus 107 ~~~~fD~Vv~~~~l~~~-~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRF-TTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp GTTCCSEEEEESCGGGS-CHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred cCCCccEEEEhhhhHhC-CHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 13789999997653333 2356778999999999 99999843
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-14 Score=129.63 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=83.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.+|||||||+|.++..+++.+ .+|+|+|+|+ |++.|+++. .++.++++|+.+++++ ++||+|++.
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~~ 124 (279)
T 3ccf_A 53 LNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVD-KPLDAVFSN 124 (279)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCS-SCEEEEEEE
T ss_pred hCCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcC-CCcCEEEEc
Confidence 345678899999999999999999954 5999999999 999998764 3588999999998875 899999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.++ ..++..++.++.++|||||.++.
T Consensus 125 ~~l~~---~~d~~~~l~~~~~~LkpgG~l~~ 152 (279)
T 3ccf_A 125 AMLHW---VKEPEAAIASIHQALKSGGRFVA 152 (279)
T ss_dssp SCGGG---CSCHHHHHHHHHHHEEEEEEEEE
T ss_pred chhhh---CcCHHHHHHHHHHhcCCCcEEEE
Confidence 55333 36778999999999999999884
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-14 Score=124.29 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CC---CCceeE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKVDI 192 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~---~~~~D~ 192 (379)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++++|+.+.. ++ .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 46789999999999999999995 3 46999999999 99999999999999888999999997642 11 157999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|+++.. ......++..+.++|+|||+++...
T Consensus 137 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 137 IFIDAD------KQNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 998653 2456788999999999999988543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=123.02 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=87.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+.+.+.... .++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++. .+++++++|+.++++ .
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~ 98 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-G 98 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-S
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-C
Confidence 3344444332 5778999999999999999999765 999999999 999998864 348999999998877 4
Q ss_pred CceeEEEEec-CccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 188 TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 188 ~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
++||+|+|.. +.+++.....+..++.++.++|+|||.++...
T Consensus 99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 8999999632 32334444677899999999999999998653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=130.07 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC------CCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP------VTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~D 191 (379)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|+++++.+++.++|+++++|+.+.... .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 46679999999999999999994 3 56999999999 9999999999999988899999999775321 37899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+|+++.. ......++..+.++|+|||+++....
T Consensus 139 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 139 FIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 9998753 24567789999999999999996543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=127.83 Aligned_cols=122 Identities=25% Similarity=0.268 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee
Q 016992 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (379)
....++.+.+.+.......++.+|||+|||+|.+++.+++.+..+|+|+|+|+ +++.|++++..+++.++++++++|+.
T Consensus 104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 104 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL 183 (284)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence 44445555555554433346679999999999999999987456999999999 99999999999999778999999998
Q ss_pred eccCCCCce---eEEEEecCccccC---------ChhhH--------HHHHHHHH-hcccCCEEEEe
Q 016992 182 EIELPVTKV---DIIISEWMGYFLL---------FENML--------NTVLYARD-KWLVDDGIVLP 227 (379)
Q Consensus 182 ~~~~~~~~~---D~Iv~~~~~~~l~---------~~~~~--------~~~l~~~~-~~LkpgG~lip 227 (379)
+. ++ ++| |+|+++++ |... +++.. ..+++.+. +.|+|||.++.
T Consensus 184 ~~-~~-~~f~~~D~IvsnPP-yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 184 EP-FK-EKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp GG-GG-GGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred hh-cc-cccCCCCEEEEcCC-CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 74 33 578 99999864 3211 22211 26788899 99999999984
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=123.57 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=84.4
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee----ccCCCCce
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IELPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~ 190 (379)
.....++.+|||+|||+|.++..+++. |..+|+|+|+++ +++.|++++..+ .++.++.+|+.+ +++. ++|
T Consensus 69 ~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCE
T ss_pred ccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccE
Confidence 344568899999999999999999985 667999999999 999999887654 569999999988 6665 789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+++. ........++.++.++|||||.++.
T Consensus 145 D~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 145 DVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp EEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEec-----CChhHHHHHHHHHHHhCCCCcEEEE
Confidence 9999543 2223457789999999999999984
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=129.71 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCchHHHHHH----H-cCCCEE--EEEecHH-HHHHHHHHHHHc-CCCCcE--EEEEcceeecc-----
Q 016992 121 FKDKVVLDVGAGTGILSLFCA----K-AGAAHV--YAVECSQ-MANMAKQIVEAN-GFSNVI--TVLKGKIEEIE----- 184 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la----~-~g~~~v--~~vD~s~-~~~~a~~~~~~~-~~~~~i--~~~~~d~~~~~----- 184 (379)
.++.+|||||||+|.++..++ . .+...| +|+|+|+ |++.|++++... ++ .++ .+..+++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence 467799999999997665332 2 233444 9999999 999999988754 44 334 44566666554
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++++||+|++..+ +.+..++..+++++.++|||||+++.
T Consensus 130 ~~~~~~fD~V~~~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i 170 (292)
T 2aot_A 130 KKELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLI 170 (292)
T ss_dssp TTCCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCCceeEEEEeee---eeecCCHHHHHHHHHHHcCCCcEEEE
Confidence 34689999998755 44447889999999999999999884
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=125.00 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCC----Ccee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~----~~~D 191 (379)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++++|+.+.. +.. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46789999999999999999984 3 57999999999 99999999999999888999999996642 111 6899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+|+++.. ......++..+.++|||||+++...
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9997642 2456788999999999999998543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=131.31 Aligned_cols=117 Identities=21% Similarity=0.159 Sum_probs=95.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+...+.......++.+|||+|||+|.+++.++.. +..+|+|+|+++ +++.|++++..+|+. +++++++|+.+++.+
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGT
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccc
Confidence 4444555566678899999999999999999995 346999999999 999999999999997 799999999998876
Q ss_pred CCceeEEEEecCccccCCh------hhHHHHHHHHHhcccCCEEEEec
Q 016992 187 VTKVDIIISEWMGYFLLFE------NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~------~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
...||+|+++++ |+.... .....++..+.++|+|||.++..
T Consensus 270 ~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 270 FPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp CCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred cCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 677999999975 433221 22367889999999999998843
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-14 Score=124.36 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCC--CCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELP--VTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~~D~Iv~ 195 (379)
.++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++...++.++++++++|+.+. +.. .++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 47789999999999999999995 456999999999 9999999999999877899999999874 221 378999998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+... .....++..+.++|+|||.++....
T Consensus 133 ~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAK------GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGG------SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCH------HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 7531 3567899999999999999986543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-14 Score=120.81 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CC--CCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP--VTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~--~~~~D~Iv~~ 196 (379)
++.+|||+|||+|.++..+++.+. .|+|+|+++ +++.|++++..+++ +++++++|+.+.. .+ .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 778999999999999999999876 599999999 99999999999887 6999999998742 11 2479999998
Q ss_pred cCccccCChhhHHHHHHHHH--hcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARD--KWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip 227 (379)
++ +. .....++..+. ++|+|||.++.
T Consensus 118 ~~-~~----~~~~~~~~~~~~~~~L~~gG~~~~ 145 (171)
T 1ws6_A 118 PP-YA----MDLAALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp CC-TT----SCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred CC-Cc----hhHHHHHHHHHhhcccCCCcEEEE
Confidence 64 22 22334455555 99999999984
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=126.28 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=89.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-------HHHHHHHHHHHcCCCCcEEEEEcc---e
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-------MANMAKQIVEANGFSNVITVLKGK---I 180 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-------~~~~a~~~~~~~~~~~~i~~~~~d---~ 180 (379)
.+.......++.+|||||||+|.++..+++. |. .+|+|+|+|+ +++.|++++...++.++++++++| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3444455678999999999999999999986 43 6999999986 799999999988887789999998 4
Q ss_pred eeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 181 ~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+++++++||+|++..+.+++ .+...++..+.++++|||.++.
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~l~~~gG~l~~ 157 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYF---ASANALALLFKNMAAVCDHVDV 157 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGS---SCHHHHHHHHHHHTTTCSEEEE
T ss_pred ccCCCCCCCEEEEEEccchhhC---CCHHHHHHHHHHHhCCCCEEEE
Confidence 5555566899999987654444 4455677778888888999884
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-15 Score=128.74 Aligned_cols=118 Identities=21% Similarity=0.102 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhccCC-CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee
Q 016992 105 VRTKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (379)
...+.+.+.+...... .++.+|||+|||+|.++..+++.+ ..+|+|+|+++ +++.|++++..+++ +++++++|+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 89 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchH
Confidence 3444555555544433 678899999999999999999964 35999999999 99999999998876 6899999998
Q ss_pred eccCCC-----CceeEEEEecCccccCCh------------------------hhHHHHHHHHHhcccCCEE-EE
Q 016992 182 EIELPV-----TKVDIIISEWMGYFLLFE------------------------NMLNTVLYARDKWLVDDGI-VL 226 (379)
Q Consensus 182 ~~~~~~-----~~~D~Iv~~~~~~~l~~~------------------------~~~~~~l~~~~~~LkpgG~-li 226 (379)
+ .++. ++||+|+++++ ++.... ..+..++..+.++|||||+ ++
T Consensus 90 ~-~~~~~~~~~~~fD~i~~npp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 90 E-WLIERAERGRPWHAIVSNPP-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp H-HHHHHHHTTCCBSEEEECCC-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred h-hhhhhhhccCcccEEEECCC-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 7 3433 78999999864 221110 1126788888999999999 55
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-14 Score=120.04 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.++++ . .+++++.+| +++++++||+|++..+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d---~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F-DSVITLSDP---KEIPDNSVDFILFANS 84 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C-TTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC---CCCCCCceEEEEEccc
Confidence 46788999999999999999999765 999999999 99999887 2 468999999 5566689999998765
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+ +..+...+++++.++|||||.++.
T Consensus 85 l~---~~~~~~~~l~~~~~~L~pgG~l~~ 110 (170)
T 3i9f_A 85 FH---DMDDKQHVISEVKRILKDDGRVII 110 (170)
T ss_dssp ST---TCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred hh---cccCHHHHHHHHHHhcCCCCEEEE
Confidence 33 336778999999999999999984
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-14 Score=126.10 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (379)
..++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ ++++++|+.++ ++++++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 45778999999999999999999866 899999999 99998864 68899999886 6667899999997
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.+++. ...+..++.++.++|||||.++.
T Consensus 109 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~ 138 (240)
T 3dli_A 109 HFVEHLD-PERLFELLSLCYSKMKYSSYIVI 138 (240)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHHBCTTCCEEE
T ss_pred CchhhCC-cHHHHHHHHHHHHHcCCCcEEEE
Confidence 6544442 23678999999999999999985
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=123.99 Aligned_cols=105 Identities=27% Similarity=0.227 Sum_probs=89.0
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcceeeccCCCCc
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+ |. .+++++++|+.+.++++++
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~~ 166 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEEAELEEAA 166 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGGCCCCTTC
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhhcCCCCCC
Confidence 444456678999999999999999999996 5 46999999999 999999999887 74 6799999999988666678
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|++++ +....++.++.++|+|||.++.
T Consensus 167 ~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~ 196 (258)
T 2pwy_A 167 YDGVALDL--------MEPWKVLEKAALALKPDRFLVA 196 (258)
T ss_dssp EEEEEEES--------SCGGGGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECC--------cCHHHHHHHHHHhCCCCCEEEE
Confidence 99999864 2334778889999999999884
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-14 Score=143.33 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeec-cCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI-ELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~D~Iv~~~ 197 (379)
.+|++|||+|||+|.+++.+++.|+.+|++||+|+ +++.|+++++.+++. ++++++++|+.++ +...++||+|++++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 47889999999999999999998888999999999 999999999999997 5899999999874 33347899999997
Q ss_pred Cccc--------cCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 198 MGYF--------LLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 198 ~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+.+. .........++..+.++|+|||.++.+.+
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 6432 12234567889999999999999995443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=127.91 Aligned_cols=106 Identities=23% Similarity=0.153 Sum_probs=86.1
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.......++.+|||||||+|.++..+++.+. .+|+|+|+++ +++.|++++..+++.+ ++++++|+.+...+.++|
T Consensus 67 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~~f 145 (317)
T 1dl5_A 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFSPY 145 (317)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCE
T ss_pred HHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCCCe
Confidence 44445667899999999999999999998532 5799999999 9999999999999865 999999998854444789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|+|++..+...+ . ..+.++|||||+++...
T Consensus 146 D~Iv~~~~~~~~---~------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 146 DVIFVTVGVDEV---P------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp EEEEECSBBSCC---C------HHHHHHEEEEEEEEEEB
T ss_pred EEEEEcCCHHHH---H------HHHHHhcCCCcEEEEEE
Confidence 999997654333 2 45678999999998653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=122.01 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=84.4
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCCCCce
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~ 190 (379)
.+.+.||.+|||+|||+|.++..+|+. | .++|+|+|+++ |++.+++++... .++..+.+|+... +...+.+
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCE
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceE
Confidence 356789999999999999999999994 4 47999999999 999998887654 3588898888654 3345789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+++.. +..+...++.++.+.|||||.++.
T Consensus 149 DvVf~d~~-----~~~~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 149 DGLYADVA-----QPEQAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp EEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEecc-----CChhHHHHHHHHHHhccCCCEEEE
Confidence 99997642 225667899999999999999874
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=121.34 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~ 196 (379)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++++|+.+. +...+ ||+|+++
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 35679999999999999999985 3 46999999999 9999999999998877899999999775 33336 9999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
.. ......++..+.++|||||+++....
T Consensus 134 ~~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 134 CD------VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp TT------TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred CC------hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 42 14567889999999999999986543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-14 Score=134.43 Aligned_cols=111 Identities=24% Similarity=0.215 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----CCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv~ 195 (379)
.++.+|||+|||+|.+++.+++.|+++|+|+|+++ +++.|++++..+++.++++++++|+.++.. ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 37889999999999999999998888999999999 999999999999986689999999987632 2468999999
Q ss_pred ecCccccCC------hhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 196 EWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 196 ~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+++.+.... ......++..+.++|+|||.++..+++
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 875332211 134567888999999999998865443
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=130.95 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=88.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHH-------HHHHHHcCCC-CcEEEEEcceee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMA-------KQIVEANGFS-NVITVLKGKIEE 182 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a-------~~~~~~~~~~-~~i~~~~~d~~~ 182 (379)
.+.......++.+|||||||+|.++..+|+ .|..+|+|||+++ +++.| ++++...|+. .+++++++|...
T Consensus 233 ~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~ 312 (433)
T 1u2z_A 233 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 312 (433)
T ss_dssp HHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence 344445667899999999999999999999 4777999999999 99999 8888888853 679999976442
Q ss_pred c--cC--CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 183 I--EL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 183 ~--~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
. ++ ..++||+|+++.. + ....+..++.++.+.|||||.++..
T Consensus 313 ~~~~~~~~~~~FDvIvvn~~---l-~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 313 DNNRVAELIPQCDVILVNNF---L-FDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TCHHHHHHGGGCSEEEECCT---T-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccccCCCCEEEEeCc---c-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence 1 11 1368999997532 2 2257778899999999999999854
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=121.57 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=83.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (379)
....++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.+.++++.+ .+++++++|+.+. +...++||
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEE
Confidence 44668899999999999999999985 347999999999 999888888776 4699999999873 33457899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++++. .......++.++.++|||||.++.
T Consensus 150 ~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i 180 (233)
T 2ipx_A 150 VIFADVA-----QPDQTRIVALNAHTFLRNGGHFVI 180 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEE
Confidence 9998753 223445678889999999999985
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=126.26 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=89.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+++.++++++++|+.+. ++.++|
T Consensus 104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 182 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDV 182 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSE
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCcc
Confidence 444456778999999999999999999986 5 57999999999 9999999999998867899999999887 555789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|++++. ....++..+.++|+|||.++..
T Consensus 183 D~V~~~~~--------~~~~~l~~~~~~L~pgG~l~~~ 212 (277)
T 1o54_A 183 DALFLDVP--------DPWNYIDKCWEALKGGGRFATV 212 (277)
T ss_dssp EEEEECCS--------CGGGTHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCc--------CHHHHHHHHHHHcCCCCEEEEE
Confidence 99998642 3347788889999999999843
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=133.46 Aligned_cols=110 Identities=20% Similarity=0.189 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-CCcEEEEEcceeeccC----CCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-SNVITVLKGKIEEIEL----PVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~----~~~~~D~Iv 194 (379)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++ .++++++++|+.++.. ...+||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 47889999999999999999998888999999999 99999999999998 6579999999987632 136899999
Q ss_pred EecCcccc------CChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 195 SEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 195 ~~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
++++.+.. ........++..+.++|+|||+++.+.+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99753221 1124567888899999999999986543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=127.06 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=85.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcceeeccCCCC
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~ 188 (379)
.+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+ |. ++++++++|+.+ .++++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISDQ 178 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCSC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcCC
Confidence 3444556778899999999999999999985 346999999999 999999999888 75 569999999987 45557
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||+|++++ +....++.++.++|||||+++..
T Consensus 179 ~fD~Vi~~~--------~~~~~~l~~~~~~LkpgG~l~i~ 210 (275)
T 1yb2_A 179 MYDAVIADI--------PDPWNHVQKIASMMKPGSVATFY 210 (275)
T ss_dssp CEEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred CccEEEEcC--------cCHHHHHHHHHHHcCCCCEEEEE
Confidence 899999853 23457889999999999999854
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=125.39 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|+++++.+++. ++.++++|+.+++. .++||+|+++
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~d 193 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIMG 193 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEEC
Confidence 3568899999999999999999996 467999999999 999999999999995 58899999998833 4789999998
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++. ....++..+.+.|+|||.++.
T Consensus 194 ~p~-------~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 194 YVH-------KTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp CCS-------SGGGGHHHHHHHEEEEEEEEE
T ss_pred Ccc-------cHHHHHHHHHHHcCCCCEEEE
Confidence 652 334577788899999999883
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=124.47 Aligned_cols=117 Identities=18% Similarity=0.293 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEec-HH-HHHHHHHHH-----HHcCCC----CcEEE
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQ-MANMAKQIV-----EANGFS----NVITV 175 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~-s~-~~~~a~~~~-----~~~~~~----~~i~~ 175 (379)
...+.+.+.......++.+|||||||+|.+++.+++.|+.+|+|+|+ ++ +++.|++++ ..+++. +++++
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 34455556655555688899999999999999999988779999999 89 999999999 555654 36888
Q ss_pred EEcceeecc--C----CCCceeEEEEecCccccCChhhHHHHHHHHHhccc---C--CEEEE
Q 016992 176 LKGKIEEIE--L----PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV---D--DGIVL 226 (379)
Q Consensus 176 ~~~d~~~~~--~----~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~li 226 (379)
+..+..+.. + +.++||+|++..+ +.+......++..+.++|+ | ||.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dv---l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~ 202 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADL---LSFHQAHDALLRSVKMLLALPANDPTAVAL 202 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESC---CSCGGGHHHHHHHHHHHBCCTTTCTTCEEE
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCc---ccChHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 866644321 1 2478999997433 4445778899999999999 9 99765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=120.76 Aligned_cols=102 Identities=21% Similarity=0.190 Sum_probs=81.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.|++++...+ +++++++|+.+.....++||+
T Consensus 62 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCccE
Confidence 4444556788999999999999999999986 6999999999 9999999987765 699999999873323478999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++..+.+.+ . ..+.++|+|||+++..
T Consensus 138 v~~~~~~~~~---~------~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 138 VVVWATAPTL---L------CKPYEQLKEGGIMILP 164 (231)
T ss_dssp EEESSBBSSC---C------HHHHHTEEEEEEEEEE
T ss_pred EEECCcHHHH---H------HHHHHHcCCCcEEEEE
Confidence 9986543322 1 3577899999998854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-14 Score=126.35 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHc---CCCCc---------------------
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEAN---GFSNV--------------------- 172 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~---~~~~~--------------------- 172 (379)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..+ ++.++
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 46779999999999999999885 345999999999 999999988766 44322
Q ss_pred ----EE-------------EEEcceeeccC-----CCCceeEEEEecCccccCC------hhhHHHHHHHHHhcccCCEE
Q 016992 173 ----IT-------------VLKGKIEEIEL-----PVTKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 173 ----i~-------------~~~~d~~~~~~-----~~~~~D~Iv~~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~ 224 (379)
++ ++++|+.+... ...+||+|+++++...... ......++..+.++|+|||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 66 99999887532 3358999999864222221 24567899999999999999
Q ss_pred EEe
Q 016992 225 VLP 227 (379)
Q Consensus 225 lip 227 (379)
++.
T Consensus 210 l~~ 212 (250)
T 1o9g_A 210 IAV 212 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=124.43 Aligned_cols=106 Identities=28% Similarity=0.377 Sum_probs=89.0
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc-C-CCCcEEEEEcceeeccCCCC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN-G-FSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~~~~ 188 (379)
+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+ + +.++++++++|+.+.+++++
T Consensus 91 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~ 170 (280)
T 1i9g_A 91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 170 (280)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred HHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCC
Confidence 444456778999999999999999999984 3 57999999999 999999999887 5 44679999999998877668
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+||+|+++.. ....++.++.++|+|||.++.
T Consensus 171 ~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~~ 201 (280)
T 1i9g_A 171 SVDRAVLDML--------APWEVLDAVSRLLVAGGVLMV 201 (280)
T ss_dssp CEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEE
T ss_pred ceeEEEECCc--------CHHHHHHHHHHhCCCCCEEEE
Confidence 8999998642 334778889999999999884
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-14 Score=128.36 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=86.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----------------------------
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------- 169 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~---------------------------- 169 (379)
...++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4467789999999999999998887666999999999 99999988765421
Q ss_pred CCcE-EEEEcceeeccC-CC---CceeEEEEecCccccC-ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 170 SNVI-TVLKGKIEEIEL-PV---TKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 170 ~~~i-~~~~~d~~~~~~-~~---~~~D~Iv~~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..++ .++++|+.+... +. ++||+|++..+.+++. +...+..++.++.++|||||.++..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 197 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMV 197 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Confidence 0127 999999988643 44 7899999865433111 4467889999999999999999854
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=127.27 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-----------------CCC------------
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-----------------GFS------------ 170 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-----------------~~~------------ 170 (379)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|++++... +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 47789999999999966655554445999999999 999998865421 100
Q ss_pred CcEEEEEcceee-ccC-----CCCceeEEEEecCccccCC-hhhHHHHHHHHHhcccCCEEEEec
Q 016992 171 NVITVLKGKIEE-IEL-----PVTKVDIIISEWMGYFLLF-ENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 171 ~~i~~~~~d~~~-~~~-----~~~~~D~Iv~~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+.++.+|+.+ +++ ++++||+|++..+.+++.. ..++..++.++.++|||||.|+..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 126788889887 543 2356999999765333221 357889999999999999999854
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=116.39 Aligned_cols=100 Identities=23% Similarity=0.272 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe-c
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-W 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~-~ 197 (379)
..++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++. ++.++++|+.+++++.++||+|++. .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEEECCc
Confidence 35788999999999999999999865 999999999 9999988652 4889999999887777899999986 3
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.++ ........++..+.++|+|||.++.
T Consensus 117 ~~~~-~~~~~~~~~l~~~~~~l~~~G~l~~ 145 (195)
T 3cgg_A 117 VMGF-LAEDGREPALANIHRALGADGRAVI 145 (195)
T ss_dssp CGGG-SCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhh-cChHHHHHHHHHHHHHhCCCCEEEE
Confidence 3222 2335668899999999999999884
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=122.09 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH------cCCCCcEEEEEcceee-cc--CCCCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA------NGFSNVITVLKGKIEE-IE--LPVTK 189 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~~~ 189 (379)
.++.+|||||||+|.++..+|+. +...|+|||+++ |++.|++++.. .++ .+|+++++|+.+ ++ ++.++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence 46679999999999999999985 456999999999 99999988764 345 469999999987 55 66689
Q ss_pred eeEEEEecCccccC--Chh---hHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLL--FEN---MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lip 227 (379)
||.|++........ +.. ....++..+.++|||||.|+.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~ 166 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence 99998753221110 000 014789999999999999984
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-13 Score=117.72 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=82.7
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC-C-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-A-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.......++.+|||+|||+|.++..+++.+ . .+|+++|+++ +++.|++++...++. +++++++|+.......++|
T Consensus 69 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 147 (215)
T 2yxe_A 69 MCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEPLAPY 147 (215)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGGGCCE
T ss_pred HHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCCCCCe
Confidence 3344456788999999999999999999953 2 6999999999 999999999988885 4999999986433224789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|++......+ . +.+.++|||||.++..
T Consensus 148 D~v~~~~~~~~~---~------~~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 148 DRIYTTAAGPKI---P------EPLIRQLKDGGKLLMP 176 (215)
T ss_dssp EEEEESSBBSSC---C------HHHHHTEEEEEEEEEE
T ss_pred eEEEECCchHHH---H------HHHHHHcCCCcEEEEE
Confidence 999986543322 1 4678999999998843
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=121.73 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=82.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCC-CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP-VT 188 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~ 188 (379)
+.......++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|+++ .++.++.+|+.++ +.. ..
T Consensus 44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~ 115 (227)
T 3e8s_A 44 ILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGK 115 (227)
T ss_dssp HHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCC
T ss_pred HHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCC
Confidence 33333345678999999999999999999865 999999999 99999876 2467888888887 333 35
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||+|++..+.+ ..++..+++++.++|||||+++..
T Consensus 116 ~fD~v~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~ 151 (227)
T 3e8s_A 116 DYDLICANFALL----HQDIIELLSAMRTLLVPGGALVIQ 151 (227)
T ss_dssp CEEEEEEESCCC----SSCCHHHHHHHHHTEEEEEEEEEE
T ss_pred CccEEEECchhh----hhhHHHHHHHHHHHhCCCeEEEEE
Confidence 699999875433 366789999999999999999854
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=122.98 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++.. .+ ++++|+.++++++++||+|++.....
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~ 125 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGAFEAVLALGDVL 125 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCCEEEEEEcchhh
Confidence 778999999999999999999865 999999999 9999988753 22 88899999888778999999853222
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+. .++..+++++.++|||||.++..
T Consensus 126 ~~~--~~~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 126 SYV--ENKDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp HHC--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcc--ccHHHHHHHHHHHcCCCeEEEEE
Confidence 221 34789999999999999999843
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=121.28 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C-----CCCce
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~ 190 (379)
.++++|||||||+|..++.+++. + ..+|+++|+++ +++.|+++++..|+.++|+++++|+.+.. + +.++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 46789999999999999999984 3 47999999999 99999999999999778999999987642 2 13789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
|+|+++.. ......+++.+.++|+|||+++...+
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99998642 24567889999999999999986543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=123.36 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-c-C-----CCCce
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E-L-----PVTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~ 190 (379)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|+++++..++.++|+++++|+.+. + + +.++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 46789999999999999999985 3 46999999999 9999999999999977899999999764 2 2 13789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|+|+++.. ......++..+.++|||||+++...
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99998642 1456788999999999999998543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-13 Score=120.92 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=88.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++. ..+|+++|+++ +++.|++++...++..+++++.+|+.+..++.++||+
T Consensus 83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 161 (248)
T 2yvl_A 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHA 161 (248)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSE
T ss_pred HHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccE
Confidence 344455678899999999999999999998 56999999999 9999999999998877899999999886534578999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|++++ +....++..+.++|+|||.++.
T Consensus 162 v~~~~--------~~~~~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 162 AFVDV--------REPWHYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp EEECS--------SCGGGGHHHHHHHBCTTCEEEE
T ss_pred EEECC--------cCHHHHHHHHHHHcCCCCEEEE
Confidence 99854 2334678888999999999884
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=116.31 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=77.6
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---CCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D 191 (379)
..+.+|.+|||+|||+|.++..+|+. | .++|+|+|+++ |++.+.+.++.. .++.++++|+..... ..++||
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceE
Confidence 34789999999999999999999984 3 57999999999 986665555443 469999999986531 136899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|+++... ......++..+.++|||||.|+..
T Consensus 149 ~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 149 VLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 99987531 123334455666699999999854
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=123.49 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eeccCC-CCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELP-VTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~~D~Iv~~~ 197 (379)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++ . .+++++++|+ ..++++ +++||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGLIVSRR 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence 5788999999999999999999865 999999999 99999987 2 4589999999 556666 68999999862
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++..++.++.++|||||.++
T Consensus 120 ---------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 ---------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---------CCSGGGGGHHHHEEEEEEEE
T ss_pred ---------CHHHHHHHHHHHcCCCcEEE
Confidence 34567788889999999998
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=135.71 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHc------CCCCcEEEEEcceeeccCCCCc
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEAN------GFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
...++.+|||||||+|.++..+++.+. .+|+|||+++ |++.|++++... ++ .+++++++|+.++++++++
T Consensus 718 ~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~s 796 (950)
T 3htx_A 718 RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHD 796 (950)
T ss_dssp HHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCS
T ss_pred cccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCC
Confidence 345788999999999999999999752 6999999999 999999877643 44 4799999999999888889
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
||+|++..+..++. ......++.++.++|||| .++
T Consensus 797 FDlVV~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LI 831 (950)
T 3htx_A 797 VDIGTCLEVIEHME-EDQACEFGEKVLSLFHPK-LLI 831 (950)
T ss_dssp CCEEEEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEE
T ss_pred eeEEEEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEE
Confidence 99999965544332 233457899999999999 555
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=117.28 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcceeeccCCCCceeE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
..++.+|||+|||+|.++..+++. |. .+|+++|+++ +++.|++++..+++ .++++++++|+.......++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 568899999999999999999985 43 5999999999 99999999988764 35799999999866544578999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|++..... .++..+.++|||||.++...
T Consensus 155 i~~~~~~~---------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAP---------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEECCchH---------HHHHHHHHhcCCCcEEEEEE
Confidence 99865422 23356789999999998643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.8e-13 Score=117.85 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=81.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (379)
....++.+|||+|||+|.++..+++. | ..+|+|+|+++ +++.++++++.+ .+++++++|+.+.. ...++||
T Consensus 69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCce
Confidence 34568899999999999999999985 4 37999999999 999999888755 46999999998742 1136899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.. .......++.++.++|||||.++.
T Consensus 146 ~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~ 176 (227)
T 1g8a_A 146 VIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EEEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEE
Confidence 9998753 223334558999999999999884
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-14 Score=123.56 Aligned_cols=105 Identities=17% Similarity=0.078 Sum_probs=79.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHH----HHcCCCCcEEEEEcceeeccCCCCceeEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIV----EANGFSNVITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~----~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (379)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.+.+.+ ...++ .+++++++|+.+++++++. |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEE
Confidence 467889999999999999999996 356999999999 998644333 23455 3699999999998877566 887
Q ss_pred EEecCccccC---ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLL---FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.... +... +..+...++.++.++|||||.++.
T Consensus 103 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 103 HVLMP-WGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp EEESC-CHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred EEEcc-chhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 74321 1111 122337889999999999999985
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=123.01 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCC---CCceeEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP---VTKVDII 193 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~---~~~~D~I 193 (379)
++.+|||+|||+|.++..+++. +..+|+|+|+++ |++.|++++..+++.++++++++|+.+. .++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5779999999999999988874 346999999999 9999999999999987899999998762 233 2589999
Q ss_pred EEecCccccCC-h------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLF-E------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~-~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++++ ++... + .....++..+.++|||||.+.+
T Consensus 145 ~~npp-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 145 MCNPP-FFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EECCC-CC-------------------------CTTTTHHHHTHHHH
T ss_pred EECCC-CccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 99975 32221 0 0112456678899999998753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-13 Score=120.02 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--------CCCCcEEEEEcceee-cc--CC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--------GFSNVITVLKGKIEE-IE--LP 186 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~--------~~~~~i~~~~~d~~~-~~--~~ 186 (379)
..++.+|||||||+|.+++.+++.+ ...|+|||+|+ +++.|++++..+ ++ .+++++++|+.+ ++ ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcc
Confidence 3567899999999999999999965 35999999999 999999998876 77 469999999987 54 55
Q ss_pred CCceeEEEEecCccccCC-----hhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.+|.|+.......... ......++..+.++|+|||.++.
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 678999986532211100 00014789999999999999984
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-13 Score=120.24 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCC----Ccee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~----~~~D 191 (379)
.++.+|||+|||+|..++.+++. + ..+|+++|+++ +++.|++++..+++.++++++++|+.+.. +.. ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 56789999999999999999984 3 56999999999 99999999999998778999999987642 211 6899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+|+++.. ......++..+.++|+|||.++...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9998753 1445788999999999999998543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=129.45 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
.+|.+|||+|||+|.+++.+++.|+. |+++|+|+ +++.|+++++.+++.. ++.++|+.++. ++ +.||+|++++
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~-~~fD~Ii~dp 288 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLE-GPFHHVLLDP 288 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCC-CCEEEEEECC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhc-CCCCEEEECC
Confidence 46899999999999999999998875 99999999 9999999999999864 46699988753 23 4499999997
Q ss_pred CccccCC------hhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 198 MGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 198 ~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+.+.... ......++..+.++|+|||.++..+++
T Consensus 289 P~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 289 PTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 5322111 123467888889999999999855443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=120.89 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-c------------
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E------------ 184 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~------------ 184 (379)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++++|+.+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 46789999999999999999985 3 46999999999 9999999999999877799999998763 1
Q ss_pred --CCC--CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 185 --LPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 185 --~~~--~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++. ++||+|+++.. ......++..+.++|+|||+++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 111 68999997632 245678899999999999999854
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=118.77 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----cCCC--Ccee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPV--TKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~--~~~D 191 (379)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++|+++.+|+.+. +..+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 46679999999999999999984 3 46999999999 9999999999999877899999998653 2222 6899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+|+++.. ......++..+.++|+|||+++....
T Consensus 151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 9998642 14567889999999999999986443
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=122.53 Aligned_cols=102 Identities=12% Similarity=-0.043 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-----CceeEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-----TKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~D~I 193 (379)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++. . .+++++++|+.+++... ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---A-ANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---C-TTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---c-cCceEEECcccccccccccccccCccEE
Confidence 56788999999999999999999866 999999999 9999998762 1 46999999998865431 248999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++..+.+++ ...+...++.++.++|||||+++.
T Consensus 129 ~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i 161 (245)
T 3ggd_A 129 YMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYL 161 (245)
T ss_dssp EEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred EEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 998664444 234778999999999999999773
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-13 Score=126.95 Aligned_cols=102 Identities=20% Similarity=0.291 Sum_probs=80.4
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcC----------CCCcEEEEEcceeec
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANG----------FSNVITVLKGKIEEI 183 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~----------~~~~i~~~~~d~~~~ 183 (379)
.....++.+|||+|||+|.++..+++. |. .+|+++|+++ +++.|++++...+ +..+++++++|+.+.
T Consensus 100 ~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~ 179 (336)
T 2b25_A 100 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 179 (336)
T ss_dssp HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence 345678999999999999999999995 55 7999999999 9999999998632 235799999999886
Q ss_pred --cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 --ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 --~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++++++||+|+++... ...++..+.++|+|||.++
T Consensus 180 ~~~~~~~~fD~V~~~~~~--------~~~~l~~~~~~LkpgG~lv 216 (336)
T 2b25_A 180 TEDIKSLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCA 216 (336)
T ss_dssp C-------EEEEEECSSS--------TTTTHHHHGGGEEEEEEEE
T ss_pred ccccCCCCeeEEEECCCC--------HHHHHHHHHHhcCCCcEEE
Confidence 3455689999986431 2237788899999999998
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=119.95 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCC---chHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----------C
Q 016992 122 KDKVVLDVGAGT---GILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 185 (379)
Q Consensus 122 ~~~~VLDlGcG~---G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 185 (379)
...+|||||||+ |.++..+++. +..+|+++|+|+ |++.|++++... .+++++++|+.+.. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence 447999999999 9888777664 446999999999 999999987432 56999999997631 3
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+..+||+|++..+.+++..+ ....+++++.+.|+|||.|+..
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 33589999987665555433 5889999999999999999854
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=130.03 Aligned_cols=108 Identities=21% Similarity=0.196 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----CCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv~~ 196 (379)
++.+|||+|||+|.+++.+++. +.+|+|+|+++ +++.|++++..+++.+ ++++++|+.++.. ...+||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7889999999999999999997 67999999999 9999999999999965 9999999987632 14789999999
Q ss_pred cCccccCC------hhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 197 WMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 197 ~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
++.+.... ......++..+.++|+|||.++.+.++
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 76433211 134567888999999999999865443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=127.19 Aligned_cols=96 Identities=19% Similarity=0.296 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|.+++. ++ ++.+|+|+|+|+ +++.|+++++.+++.++++++++|+.++. ++||+|+++++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 5788999999999999999 87 678999999999 99999999999999778999999998875 789999998653
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+. ..++..+.++|+|||.++..
T Consensus 269 ~~-------~~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 269 FA-------HKFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp TG-------GGGHHHHHHHEEEEEEEEEE
T ss_pred hH-------HHHHHHHHHHcCCCCEEEEE
Confidence 22 26777888999999998843
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=120.96 Aligned_cols=105 Identities=17% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|.++..+++. +..+++++|++.+++.|++++...++.++++++.+|+.+.+++ ..||+|++..+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~v~~~~~l 242 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG-NDYDLVLLPNFL 242 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-SCEEEEEEESCG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCcEEEEcchh
Confidence 67789999999999999999985 4569999999999999999999988877899999999887666 459999986543
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+ .......+++++.+.|+|||+++.
T Consensus 243 ~~~-~~~~~~~~l~~~~~~L~pgG~l~i 269 (335)
T 2r3s_A 243 HHF-DVATCEQLLRKIKTALAVEGKVIV 269 (335)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccC-CHHHHHHHHHHHHHhCCCCcEEEE
Confidence 332 224567999999999999998874
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=122.39 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHhccCCCC-CCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCC
Q 016992 114 IYQNKFLFK-DKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVT 188 (379)
Q Consensus 114 i~~~~~~~~-~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~ 188 (379)
+.......+ +.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++|+++.+|+.+.+ .+ +
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~ 247 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-G 247 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT-C
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC-C
Confidence 444444555 789999999999999999984 5579999999 7 99999999999998888999999998876 54 6
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.||+|++..+.+.+ .......+++++.+.|+|||+++.
T Consensus 248 ~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i 285 (352)
T 3mcz_A 248 AADVVMLNDCLHYF-DAREAREVIGHAAGLVKPGGALLI 285 (352)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CccEEEEecccccC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 79999987654333 233458999999999999999884
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-12 Score=121.63 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=90.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
.+.......++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...+++++++++.+|+.+.+++ .+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~ 257 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EA 257 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC--CC
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC--CC
Confidence 3444445667889999999999999999985 4569999999 9 9999999999999888899999999887665 34
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++..+.+.+. ......+++++.+.|||||+++.
T Consensus 258 D~v~~~~vlh~~~-d~~~~~~l~~~~~~L~pgG~l~i 293 (359)
T 1x19_A 258 DAVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLI 293 (359)
T ss_dssp SEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CEEEEechhccCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999875533331 23378999999999999999874
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=122.32 Aligned_cols=111 Identities=22% Similarity=0.171 Sum_probs=88.9
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++|+++.+|+.+ +++ ..||
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D 250 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTAD 250 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEE
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC-CCCC
Confidence 344444567889999999999999999985 3469999999 8 999999999999987789999999876 344 3599
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|++..+.+.+. ......+++++.++|+|||+++..
T Consensus 251 ~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 286 (374)
T 1qzz_A 251 VVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVL 286 (374)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeccccCCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999876543331 223358999999999999998853
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=116.30 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcceeecc---
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIE--- 184 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g------~~~v~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~--- 184 (379)
...++.+|||||||+|.++..+++.. ..+|+++|+++ +++.|++++...++ ..+++++++|+.+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 45688999999999999999999853 25999999999 99999999998873 357999999998754
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...++||+|++..... .++..+.++|||||+++.
T Consensus 157 ~~~~~~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 157 KKELGLFDAIHVGASAS---------ELPEILVDLLAENGKLII 191 (227)
T ss_dssp HHHHCCEEEEEECSBBS---------SCCHHHHHHEEEEEEEEE
T ss_pred CccCCCcCEEEECCchH---------HHHHHHHHhcCCCcEEEE
Confidence 3347899999865422 134667899999999884
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=124.18 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (379)
..+.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++|+++.+|+.+. +++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 45679999999999999999884 4569999999 8 9999999999888878899999999986 355 789999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.+.+ .......+++++.+.|||||+++.
T Consensus 256 ~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 256 QFLDCF-SEEEVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp SCSTTS-CHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred chhhhC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 653333 234556889999999999999874
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-13 Score=125.50 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=87.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||+|||+|.++..+++.+. .+|+++|+|+ +++.|++++..+++. ++++.+|+.+.. .++||
T Consensus 188 ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--~~~fD 263 (343)
T 2pjd_A 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--KGRFD 263 (343)
T ss_dssp HHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--CSCEE
T ss_pred HHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--cCCee
Confidence 44334344567999999999999999999753 5999999999 999999999998874 577888887653 47999
Q ss_pred EEEEecCcccc--CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++++.+.. .+......++.++.++|||||.++.
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 99998753321 1234568899999999999999884
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-12 Score=111.09 Aligned_cols=100 Identities=25% Similarity=0.226 Sum_probs=82.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++ +++++++|+.+++ ++||+|++++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~ 120 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNP 120 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcC
Confidence 3457889999999999999999998777999999999 99999999988887 5999999999863 5899999997
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+ ++....+....+++.+.++| ||.++
T Consensus 121 p-~~~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 121 P-FGSQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp C-CSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred C-CccccCCchHHHHHHHHHhc--CcEEE
Confidence 5 33333344467788888887 66444
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=116.30 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=80.7
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-Ccee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D 191 (379)
+.......++.+|||+|||+|.++..+++.+..+|+++|+++ +++.|++++...++.+ ++++.+|+ ...++. .+||
T Consensus 83 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~-~~~~~~~~~fD 160 (235)
T 1jg1_A 83 MLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDG-SKGFPPKAPYD 160 (235)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG-GGCCGGGCCEE
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCc-ccCCCCCCCcc
Confidence 333345678889999999999999999995326999999999 9999999999998854 99999997 333332 4599
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|++......+ ...+.+.|+|||+++..
T Consensus 161 ~Ii~~~~~~~~---------~~~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 161 VIIVTAGAPKI---------PEPLIEQLKIGGKLIIP 188 (235)
T ss_dssp EEEECSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred EEEECCcHHHH---------HHHHHHhcCCCcEEEEE
Confidence 99986532222 13567899999998843
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-13 Score=123.13 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcceeec-cCCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (379)
..+.+|||||||+|.++..+++. +..+|++||+++ +++.|++++.. .++ ..+++++++|+.+. +...++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 35689999999999999999986 668999999999 99999998865 333 35799999998774 33347899999
Q ss_pred EecCccccCChh--hHHHHHHHHHhcccCCEEEEecC
Q 016992 195 SEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 195 ~~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+++......... ....+++.+.++|+|||+++...
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 986432111001 12678899999999999999653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=124.63 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=85.1
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.... ..++.+|||+|||+|.+++.++..+. .+|+|+|+++ |++.|++++..+|+.++++++++|+.+++.++++||
T Consensus 210 l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD 288 (373)
T 3tm4_A 210 MIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVD 288 (373)
T ss_dssp HHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEE
T ss_pred HHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcC
Confidence 33334 57888999999999999999999754 4999999999 999999999999997789999999999987778999
Q ss_pred EEEEecCccccCC------hhhHHHHHHHHHhcc
Q 016992 192 IIISEWMGYFLLF------ENMLNTVLYARDKWL 219 (379)
Q Consensus 192 ~Iv~~~~~~~l~~------~~~~~~~l~~~~~~L 219 (379)
+|+++++ |+... ......+++.+.++|
T Consensus 289 ~Ii~npP-yg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 289 FAISNLP-YGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp EEEEECC-CC------CCHHHHHHHHHHHHHHHE
T ss_pred EEEECCC-CCcccCcchhHHHHHHHHHHHHHHHc
Confidence 9999975 33221 122367788888888
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=120.74 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
..+.......++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++|+++.+|+. .+++ ..
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p-~~ 268 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP-DG 268 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC-SS
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC-CC
Confidence 34444455567889999999999999999985 4569999999 8 99999999999998889999999998 4555 38
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|++..+.+.+ .......+++++.+.|+|||+++.
T Consensus 269 ~D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i 305 (369)
T 3gwz_A 269 ADVYLIKHVLHDW-DDDDVVRILRRIATAMKPDSRLLV 305 (369)
T ss_dssp CSEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ceEEEhhhhhccC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999987654333 122334899999999999999984
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-13 Score=124.65 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcceeecc--CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++... ++ ..+++++++|+.+.. .+.++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45689999999999999999986 457999999999 999999988753 44 257999999998752 334789999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++++......... ....++..+.++|+|||+++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9976422111111 1368899999999999999964
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-12 Score=120.54 Aligned_cols=105 Identities=19% Similarity=0.053 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||||||+|.++..+++ .+..+++++|+ + +++.|++++...++.++|+++.+|+. .+++ ..||+|++..
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p-~~~D~v~~~~ 243 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLP-AGAGGYVLSA 243 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCC-CSCSEEEEES
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCC-CCCcEEEEeh
Confidence 34568999999999999999988 45569999999 8 99999999999998888999999997 3455 3899999876
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+.+. ......+++++.+.|+|||+++..
T Consensus 244 vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 244 VLHDWD-DLSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hhccCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 543332 233579999999999999999853
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=119.58 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecH-H-HHHHH---HHHHHHcCCCCcEEEEEcceeeccCC-CCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-Q-MANMA---KQIVEANGFSNVITVLKGKIEEIELP-VTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s-~-~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~I 193 (379)
.++.+|||||||+|.++..+++ .+..+|+|||+| + |++.| ++++...+++ ++.++++|+++++.. ...+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence 5788999999999999999997 345689999999 6 87777 7777777874 599999999988532 2456666
Q ss_pred EEecCccccC-C-hhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLL-F-ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~-~-~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++........ + ......++.++.++|||||.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 6543211110 0 01125688999999999999986
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-13 Score=122.82 Aligned_cols=105 Identities=19% Similarity=0.152 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CC--------CCcEEEEEcceeec-cCCCC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GF--------SNVITVLKGKIEEI-ELPVT 188 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~-~~~~~ 188 (379)
.++.+|||||||+|.++..+++.+..+|++||+++ +++.|++++ .. ++ ..+++++.+|+.+. .. .+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 45689999999999999999988767999999999 999999987 33 32 36799999998764 22 47
Q ss_pred ceeEEEEecCccccCChhh--HHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENM--LNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||+|+++....... ... ...+++.+.++|+|||+++..
T Consensus 152 ~fD~Ii~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 152 GFDVIIADSTDPVGP-AKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEECCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 899999987532111 111 267889999999999999854
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=115.70 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee--ccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~Iv~~~ 197 (379)
.++.+|||+|||+|.++..+++.| .+|+|+|+++ +++.++++. .+++++|+.+ .++++++||+|++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~ 101 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGD 101 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEES
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECC
Confidence 578899999999999999999886 6999999999 999988643 3688899876 445568999999865
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+ +.+..+...++.++.++|+|||.++..
T Consensus 102 ~---l~~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 102 V---LEHLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp C---GGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred h---hhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 4 333356789999999999999999853
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-13 Score=124.50 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcceeec-cCCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (379)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++.. +++ ..+++++++|+.+. +...++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 35689999999999999999986 567999999999 99999998765 233 35799999998774 22247899999
Q ss_pred EecCccccCChhhH-HHHHHHHHhcccCCEEEEec
Q 016992 195 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lip~ 228 (379)
++............ ..+++.+.+.|+|||+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 98642211111111 68899999999999999853
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-13 Score=122.58 Aligned_cols=104 Identities=22% Similarity=0.198 Sum_probs=75.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE-EEcceeecc---CC
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV-LKGKIEEIE---LP 186 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~-~~~d~~~~~---~~ 186 (379)
.++.......++.+|||||||||.++..+++.|+.+|+|||+++ |++.+.+.- .++.. ...++..+. ++
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~~l~ 148 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPVDFT 148 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGGGCT
T ss_pred HHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchhhCC
Confidence 33444333457889999999999999999999888999999999 998854321 23332 234554443 34
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+||+|+++.... .+..++.++.++|||||.++.
T Consensus 149 ~~~fD~v~~d~sf~------sl~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 149 EGLPSFASIDVSFI------SLNLILPALAKILVDGGQVVA 183 (291)
T ss_dssp TCCCSEEEECCSSS------CGGGTHHHHHHHSCTTCEEEE
T ss_pred CCCCCEEEEEeeHh------hHHHHHHHHHHHcCcCCEEEE
Confidence 34599999875321 247889999999999999984
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=121.92 Aligned_cols=84 Identities=25% Similarity=0.350 Sum_probs=71.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.|.......++.+|||||||+|.++..+++.+. +|+|+|+++ |++.+++++...++.++++++++|+.+++++ .|
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~f 94 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FF 94 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CC
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hh
Confidence 3344455667889999999999999999999854 999999999 9999999987776656799999999987664 79
Q ss_pred eEEEEecC
Q 016992 191 DIIISEWM 198 (379)
Q Consensus 191 D~Iv~~~~ 198 (379)
|+|+++++
T Consensus 95 D~vv~nlp 102 (285)
T 1zq9_A 95 DTCVANLP 102 (285)
T ss_dssp SEEEEECC
T ss_pred cEEEEecC
Confidence 99999864
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=114.34 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||+|||+|.++..+++. +|+|+++ +++.++++ +++++++|+.+++++.++||+|++..+.+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC 113 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHh
Confidence 3789999999999998887654 9999999 99999875 37899999998887778999999875433
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+..++..++.++.++|+|||.++.
T Consensus 114 ---~~~~~~~~l~~~~~~L~pgG~l~i 137 (219)
T 1vlm_A 114 ---FVDDPERALKEAYRILKKGGYLIV 137 (219)
T ss_dssp ---GSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ---hccCHHHHHHHHHHHcCCCcEEEE
Confidence 336678999999999999999984
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-13 Score=129.39 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=86.8
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE-EEEcceeeccC
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIEL 185 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~ 185 (379)
..+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ ++..... +...++..+++
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc
Confidence 44555666666667889999999999999999999876 999999999 99998875 4322111 22344555555
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++++||+|++..+ +.+..++..+++++.++|||||+++..
T Consensus 168 ~~~~fD~I~~~~v---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 168 TEGPANVIYAANT---LCHIPYVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp HHCCEEEEEEESC---GGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEEECCh---HHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 5689999998755 444478899999999999999999853
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-12 Score=119.87 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=87.6
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
.......++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+ +++ ..||+
T Consensus 176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~ 252 (360)
T 1tw3_A 176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADA 252 (360)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEE
T ss_pred HHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC-CCccE
Confidence 33344567889999999999999999985 3469999999 8 999999999999987789999999876 344 45999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|++..+.+.+ .......+++++.+.|+|||+++.
T Consensus 253 v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i 286 (360)
T 1tw3_A 253 IILSFVLLNW-PDHDAVRILTRCAEALEPGGRILI 286 (360)
T ss_dssp EEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEcccccCC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9987653332 122336899999999999999884
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=122.62 Aligned_cols=100 Identities=11% Similarity=0.166 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-ccC-CCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IEL-PVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~Iv~ 195 (379)
..++.+|||+| |+|.+++.+++.+. .+|+++|+++ |++.|+++++.+|+. +|+++++|+.+ ++. ..++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34688999999 99999999998765 7999999999 999999999999986 79999999988 553 2368999999
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
+++ +.. .....++..+.++|||||.+
T Consensus 248 ~~p-~~~---~~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 248 DPP-ETL---EAIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCC-SSH---HHHHHHHHHHHHTBCSTTCE
T ss_pred CCC-Cch---HHHHHHHHHHHHHcccCCeE
Confidence 875 222 12578999999999999943
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=119.35 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcceeec-cCCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (379)
..+.+|||||||+|.++..+++. +..+|++||+++ +++.|++++... ++ ..+++++.+|+.+. ....++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35689999999999999999986 678999999999 999999987652 34 35799999998774 33347899999
Q ss_pred EecCccccCChh-hHHHHHHHHHhcccCCEEEEecC
Q 016992 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+++......... ....+++.+.+.|+|||+++...
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 986532111000 12578889999999999998543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=119.84 Aligned_cols=107 Identities=20% Similarity=0.101 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH---cCCCCcEEEEEcceeeccC--CCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA---NGFSNVITVLKGKIEEIEL--PVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~--~~~~~D~I 193 (379)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++.. .....+++++.+|+.++.. +.++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 46789999999999999999986 457999999999 99999998743 1123579999999988653 35889999
Q ss_pred EEecCccccCChhhH--HHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~ 228 (379)
+++....... ...+ ..+++.+.++|||||+++..
T Consensus 174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9986432211 1111 57899999999999999853
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-13 Score=124.08 Aligned_cols=109 Identities=21% Similarity=0.228 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcceeec-cCCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (379)
..+.+|||||||+|.++..+++. +..+|++||+++ +++.|++++... ++ ..+++++.+|+.+. ....++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 35679999999999999999986 457999999999 999999988653 33 36799999999774 22347899999
Q ss_pred EecCccccCChhhH-HHHHHHHHhcccCCEEEEecC
Q 016992 195 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 195 ~~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lip~~ 229 (379)
++............ ..+++.+.++|+|||+++...
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 97643211111111 688999999999999998654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-12 Score=116.08 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCch----HHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHH--------------H---------cC
Q 016992 122 KDKVVLDVGAGTGI----LSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVE--------------A---------NG 168 (379)
Q Consensus 122 ~~~~VLDlGcG~G~----~~~~la~~-g----~~~v~~vD~s~-~~~~a~~~~~--------------~---------~~ 168 (379)
++.+|||+|||||. +++.+++. | ..+|+|+|+|+ |++.|++.+. + .|
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999997 67777764 4 23899999999 9999998641 0 00
Q ss_pred -------CCCcEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 169 -------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 169 -------~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+..+|.|.++|+.+.+++ .++||+|+|..+..++ .......++..+.+.|+|||+++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 013699999999886554 4789999996553333 334558999999999999999984
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-13 Score=119.15 Aligned_cols=97 Identities=9% Similarity=0.096 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cC-CCCcee
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---EL-PVTKVD 191 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-----g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~-~~~~~D 191 (379)
++.+|||||||+|..+..+++. +..+|+|||+++ |++.|+ ++..+|+++++|+.+. +. ...+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 5679999999999999999986 346999999999 998887 2235799999999884 43 224799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHh-cccCCEEEEecCC
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDK-WLVDDGIVLPDKA 230 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~-~LkpgG~lip~~~ 230 (379)
+|+++.. + ..+..++.++.+ +|||||+++....
T Consensus 155 ~I~~d~~-~-----~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA-H-----ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS-C-----SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc-h-----HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998753 1 256788999997 9999999996543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=119.46 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
....+ .+|||+|||+|.++..+++. +..+++++|+ + +++.|++++...++.++|+++.+|+.+ +++ ++||+|++
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~ 239 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLL 239 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEE
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEE
Confidence 34445 89999999999999999984 4569999999 9 999999998887777789999999987 555 78999998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+.+.+ .......+++++.+.|+|||+++..
T Consensus 240 ~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 240 SRIIGDL-DEAASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp ESCGGGC-CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred chhccCC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7653332 2234459999999999999998854
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-12 Score=113.61 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHH-cCC------CEEEEEecHH-HHHHHHHHHHHcC-----CCCcEEEEEcceeeccC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECSQ-MANMAKQIVEANG-----FSNVITVLKGKIEEIEL 185 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~-~g~------~~v~~vD~s~-~~~~a~~~~~~~~-----~~~~i~~~~~d~~~~~~ 185 (379)
...++.+|||+|||+|.++..+++ .+. .+|+++|+++ +++.|++++...+ . .+++++++|+.+ .+
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~-~~ 158 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRK-GY 158 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGG-CC
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC-CceEEEECCccc-CC
Confidence 356788999999999999999998 443 5999999999 9999999988765 3 469999999987 33
Q ss_pred C-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ .++||+|++...... +..++.++|||||+++.
T Consensus 159 ~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi 192 (227)
T 1r18_A 159 PPNAPYNAIHVGAAAPD---------TPTELINQLASGGRLIV 192 (227)
T ss_dssp GGGCSEEEEEECSCBSS---------CCHHHHHTEEEEEEEEE
T ss_pred CcCCCccEEEECCchHH---------HHHHHHHHhcCCCEEEE
Confidence 3 268999998654322 22667899999999884
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=120.10 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=81.2
Q ss_pred CEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEecCc
Q 016992 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~ 199 (379)
.+|||||||+|.++..+++ .+..+|++||+++ +++.|++++.... ..+++++.+|+.++. .+.++||+|+++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4999999999999999999 5556999999999 9999999875432 357999999998763 335789999998643
Q ss_pred cccCChh-hHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (379)
....... ....+++.+.++|+|||+++..
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~ 199 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVAN 199 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 2211111 1268899999999999999843
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-12 Score=119.28 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcceeec-cCCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (379)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++.. .++ ..+++++.+|+.+. +...++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999986 457999999999 99999998876 344 36799999999773 33347899999
Q ss_pred EecCccccCCh-hhHHHHHHHHHhcccCCEEEEec
Q 016992 195 SEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++......... .....+++.+.++|+|||+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence 98643211000 01246889999999999999853
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=109.98 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+ |++. .++++++++|+.+ ++++++||+|+++++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~- 87 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPP- 87 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCC-
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCC-
Confidence 467799999999999999999986 999999999 9887 2568999999987 444589999999864
Q ss_pred cccCC-------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.... ......++..+.+.| |||.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~ 121 (170)
T 3q87_B 88 YVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYL 121 (170)
T ss_dssp CBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEE
T ss_pred CccCCccccccCCcchHHHHHHHHhhC-CCCEEEE
Confidence 32111 112345677777777 9999874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=120.69 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cC-C-CCcEEEEEcceeec-cCCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NG-F-SNVITVLKGKIEEI-ELPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~--~~-~-~~~i~~~~~d~~~~-~~~~~~~D~I 193 (379)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++.. .+ + ..+++++.+|+.+. +...++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999986 567999999999 99999998865 22 2 35799999999874 3334789999
Q ss_pred EEecCccc-cCC-hhh--HHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYF-LLF-ENM--LNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~-l~~-~~~--~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++..... ... ... ...+++.+.++|+|||+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 99865322 001 011 368899999999999999864
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.6e-12 Score=115.13 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeecc-CCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (379)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++...+ + ..+++++.+|+.+.. ...++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 45689999999999999999986 457999999999 9999999876432 2 257999999997742 2247899999
Q ss_pred EecCccccCChhhH--HHHHHHHHhcccCCEEEEecC
Q 016992 195 SEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 195 ~~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~~ 229 (379)
++....... ...+ ..+++.+.+.|+|||+++...
T Consensus 157 ~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGP-AETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTG-GGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 986432211 1222 688999999999999998543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=107.51 Aligned_cols=91 Identities=20% Similarity=0.103 Sum_probs=71.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++. +++++++|+.+++ ++||+|++++
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~ 118 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNP 118 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECC
Confidence 3457889999999999999999998777899999999 9999998764 4899999998864 6899999987
Q ss_pred CccccCChhhHHHHHHHHHhcc
Q 016992 198 MGYFLLFENMLNTVLYARDKWL 219 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~L 219 (379)
+.+.+.. +....+++.+.+.|
T Consensus 119 p~~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 119 PFGSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp CC--------CHHHHHHHHHHE
T ss_pred CchhccC-chhHHHHHHHHHhc
Confidence 6433322 33356788888877
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-12 Score=106.60 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=76.0
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CCC
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (379)
....++.+|||+|||+|.++..+++. |. .+|+|+|+++++. + .+++++++|+.+.+ +++
T Consensus 18 ~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----------~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----------I-VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----------C-TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----------c-CcEEEEEcccccchhhhhhhccCCC
Confidence 33578889999999999999999986 54 7999999998221 1 45999999998876 556
Q ss_pred CceeEEEEecCccccCCh--h------hHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFE--N------MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~--~------~~~~~l~~~~~~LkpgG~lip 227 (379)
++||+|+++.+.+..... . ....++..+.++|+|||.++.
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 789999997653333221 0 116889999999999999983
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-13 Score=118.28 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=70.0
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEE-Ecceeec---cCC
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL-KGKIEEI---ELP 186 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~-~~d~~~~---~~~ 186 (379)
+++.......++.+|||||||+|.++..+++.|+.+|+|+|+|+ |++.|+++..+ +... ..++..+ .++
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~~~ 100 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLADFE 100 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGGCC
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhHcC
Confidence 33444333456789999999999999999999878999999999 99987764322 2221 1122111 122
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|.+.++.+... +..++.++.++|||||.++.
T Consensus 101 ~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 101 QGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp SCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred cCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEEE
Confidence 123566665543211 26789999999999999985
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=118.94 Aligned_cols=113 Identities=21% Similarity=0.122 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI- 183 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~- 183 (379)
.++.+.+.+.......++.+|||+|||+|.+++.+++. ..+|+|+|+|+ +++.|++++..+++. +++++++|+.+.
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l 347 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHh
Confidence 35555555655555667889999999999999999998 46999999999 999999999999985 799999999873
Q ss_pred ---cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ---ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ---~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++++++||+|+++++-.++ ..++..+.+ ++|++.++.
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEE
T ss_pred hhhhhhcCCCCEEEECCCCccH------HHHHHHHHh-cCCCeEEEE
Confidence 2334689999999763332 134444433 688887763
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=118.95 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC---------------------------------------CEEE
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHVY 149 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~---------------------------------------~~v~ 149 (379)
.+..++.......++..|||+|||+|.+++.+|..+. .+|+
T Consensus 182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 4555566666777889999999999999999988532 3799
Q ss_pred EEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCC--hhhHHHHHHHHHhcccC--CEE
Q 016992 150 AVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF--ENMLNTVLYARDKWLVD--DGI 224 (379)
Q Consensus 150 ~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~~Lkp--gG~ 224 (379)
|+|+++ +++.|++++..+|+.+.|++.++|+.+++.+ .+||+|+++++ |+... ...+..+...+.+.||+ ||.
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPP-yg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPP-YGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCC-CcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999 9999999999999987899999999998766 68999999975 44322 24556677777777776 665
Q ss_pred EE
Q 016992 225 VL 226 (379)
Q Consensus 225 li 226 (379)
++
T Consensus 340 ~~ 341 (385)
T 3ldu_A 340 YY 341 (385)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=108.22 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-C--CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc------------
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-G--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE------------ 184 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g--~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------------ 184 (379)
..++.+|||+|||+|.++..+++. + ..+|+|+|++++. .. .+++++++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhcccccccc
Confidence 467889999999999999999984 4 4699999999821 12 35899999998765
Q ss_pred -------------CCCCceeEEEEecCccccCC-hhh-------HHHHHHHHHhcccCCEEEEe
Q 016992 185 -------------LPVTKVDIIISEWMGYFLLF-ENM-------LNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -------------~~~~~~D~Iv~~~~~~~l~~-~~~-------~~~~l~~~~~~LkpgG~lip 227 (379)
++.++||+|+++...+.... ..+ ...++..+.++|||||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 45578999999764332110 011 12478889999999999984
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.9e-12 Score=113.52 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|+++. .++.++.+|+.++++++++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 57789999999999999999995 345999999999 999998764 3478999999988877789999998542
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+.++.++|||||.++.
T Consensus 158 ----------~~~l~~~~~~L~pgG~l~~ 176 (269)
T 1p91_A 158 ----------PCKAEELARVVKPGGWVIT 176 (269)
T ss_dssp ----------CCCHHHHHHHEEEEEEEEE
T ss_pred ----------hhhHHHHHHhcCCCcEEEE
Confidence 1246788899999999884
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=118.64 Aligned_cols=116 Identities=13% Similarity=0.158 Sum_probs=91.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC---------------------------------------CEEE
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHVY 149 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~---------------------------------------~~v~ 149 (379)
.+..++.......++..|||++||+|.+++.+|..+. .+|+
T Consensus 188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 4455566666677889999999999999999987432 3599
Q ss_pred EEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCC--hhhHHHHHHHHHhcccC--CEE
Q 016992 150 AVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF--ENMLNTVLYARDKWLVD--DGI 224 (379)
Q Consensus 150 ~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~~Lkp--gG~ 224 (379)
|+|+++ |++.|++++..+|+.++|+++++|+.+++.+ .+||+|+++++ |+... ...+..+...+.+.||+ ||.
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPP-Yg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 345 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPP-YGERLEDEEAVRQLYREMGIVYKRMPTWS 345 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCC-CccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence 999999 9999999999999988899999999998776 68999999975 44322 23455666666666665 776
Q ss_pred EE
Q 016992 225 VL 226 (379)
Q Consensus 225 li 226 (379)
++
T Consensus 346 ~~ 347 (393)
T 3k0b_A 346 VY 347 (393)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=114.83 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=65.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.|++++..+++ ++++++++|+.++++ .+||+
T Consensus 34 i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--~~~D~ 109 (299)
T 2h1r_A 34 IIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--PKFDV 109 (299)
T ss_dssp HHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--CCCSE
T ss_pred HHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--ccCCE
Confidence 4444456788999999999999999999875 5999999999 99999999988887 569999999988765 48999
Q ss_pred EEEecC
Q 016992 193 IISEWM 198 (379)
Q Consensus 193 Iv~~~~ 198 (379)
|+++++
T Consensus 110 Vv~n~p 115 (299)
T 2h1r_A 110 CTANIP 115 (299)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 999865
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-11 Score=116.42 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=84.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (379)
.+.+.+.+.. ..++.+|||+|||+|.+++.+|+.+ .+|+|+|+++ +++.|++++..+++. ++++++|+.++..
T Consensus 278 ~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~ 351 (425)
T 2jjq_A 278 AVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV 351 (425)
T ss_dssp HHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC
T ss_pred HHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc
Confidence 3344444443 4678899999999999999999974 5999999999 999999999999984 9999999988743
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+||+|+++++-.++ ...++..+. .|+|||.++.+
T Consensus 352 --~~fD~Vv~dPPr~g~-----~~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 352 --KGFDTVIVDPPRAGL-----HPRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp --TTCSEEEECCCTTCS-----CHHHHHHHH-HHCCSEEEEEE
T ss_pred --cCCCEEEEcCCccch-----HHHHHHHHH-hcCCCcEEEEE
Confidence 389999998753222 234555554 48999998854
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-12 Score=108.56 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=72.5
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCC-----------
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP----------- 186 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----------- 186 (379)
....++.+|||||||+|.++..+++. ..+|+|||++++ ..+ .+++++++|+.+....
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~----------~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM----------EEI-AGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC----------CCC-TTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc----------ccC-CCeEEEEccccCHHHHHHHHHHhhccc
Confidence 34568899999999999999999998 459999999982 112 3589999999875421
Q ss_pred CCceeEEEEecCccccCC--------hhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~li 226 (379)
.++||+|++++....... ......++..+.++|||||.|+
T Consensus 89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 148999999864322111 1123567888899999999998
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=116.45 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=93.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC---------------------------------------CEE
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 148 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~---------------------------------------~~v 148 (379)
+.+..++.......++..|||.+||+|.+++.+|..+. .+|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 34555566666677889999999999999999987432 359
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcccc--CChhhHHHHHHHHHhcccC--CE
Q 016992 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVD--DG 223 (379)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l--~~~~~~~~~l~~~~~~Lkp--gG 223 (379)
+|+|+++ |++.|++++..+|+.+.|+++++|+.+++.+ .+||+|+++++ |+. .....+..+...+.+.||+ ||
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPP-YG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPP-YGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCC-CTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCc-hhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 9999999 9999999999999988899999999998776 68999999975 443 2335667777777777776 76
Q ss_pred EEE
Q 016992 224 IVL 226 (379)
Q Consensus 224 ~li 226 (379)
.++
T Consensus 338 ~~~ 340 (384)
T 3ldg_A 338 SQF 340 (384)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-12 Score=119.84 Aligned_cols=100 Identities=12% Similarity=-0.029 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcceeeccC--CCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIEL--PVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~--~~~~~D~Iv 194 (379)
.+|.+|||++||+|.+++.++.. |+++|+++|+++ +++.+++|++.|++.++ ++++++|+.++.. ..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999984 567999999999 99999999999999776 9999999977532 136899999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++. + ....++..+.+.|+|||.++.
T Consensus 131 lDP~--g-----~~~~~l~~a~~~Lk~gGll~~ 156 (392)
T 3axs_A 131 LDPF--G-----TPVPFIESVALSMKRGGILSL 156 (392)
T ss_dssp ECCS--S-----CCHHHHHHHHHHEEEEEEEEE
T ss_pred ECCC--c-----CHHHHHHHHHHHhCCCCEEEE
Confidence 9873 1 224577888889999997763
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=117.41 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCC------CchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-----
Q 016992 121 FKDKVVLDVGAG------TGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG------~G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----- 186 (379)
.++.+||||||| +|..++.+++ . +..+|+|||+|+ |.. ...+|+++++|+.++++.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~ 284 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIAR 284 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhc
Confidence 456899999999 7766776665 3 557999999999 831 125799999999987654
Q ss_pred -CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 187 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++||+|+++.. .+..+....+.++.++|||||+++..
T Consensus 285 ~d~sFDlVisdgs----H~~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 285 RYGPFDIVIDDGS----HINAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHCCEEEEEECSC----CCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccCCccEEEECCc----ccchhHHHHHHHHHHhcCCCeEEEEE
Confidence 589999998642 23367789999999999999999853
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-12 Score=127.81 Aligned_cols=101 Identities=24% Similarity=0.253 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~~ 197 (379)
.++.+|||||||+|.++..+|+.|+ .|+|||.++ +++.|+..+...|.. +|++.+++++++ ..++++||+|+|--
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 3567999999999999999999987 999999999 999999999888753 599999999988 34557999999955
Q ss_pred CccccCChhhHHHH--HHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTV--LYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~--l~~~~~~LkpgG~li 226 (379)
+.+++ .++..+ +..+.+.|+++|..+
T Consensus 143 ~~ehv---~~~~~~~~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 143 VFHHI---VHLHGIDEVKRLLSRLADVTQAV 170 (569)
T ss_dssp CHHHH---HHHHCHHHHHHHHHHHHHHSSEE
T ss_pred chhcC---CCHHHHHHHHHHHHHhcccccee
Confidence 53433 443322 234555677766543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=106.20 Aligned_cols=97 Identities=25% Similarity=0.256 Sum_probs=72.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc-CC---------CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEE-Ecceeecc--
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA-GA---------AHVYAVECSQ-MANMAKQIVEANGFSNVITVL-KGKIEEIE-- 184 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~-g~---------~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~-- 184 (379)
.+.++.+|||+|||+|.++..+++. |. .+|+|+|+++ + .+ .+++++ ++|+....
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTS 86 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHH
Confidence 3567899999999999999999985 64 6999999998 3 12 347888 88876643
Q ss_pred ------CCCCceeEEEEecCccccCCh-hhH-------HHHHHHHHhcccCCEEEEe
Q 016992 185 ------LPVTKVDIIISEWMGYFLLFE-NML-------NTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ------~~~~~~D~Iv~~~~~~~l~~~-~~~-------~~~l~~~~~~LkpgG~lip 227 (379)
+++++||+|+++...+...+. .+. ..++.++.++|||||.++.
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC 143 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 233689999997533322111 111 4788899999999999984
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-12 Score=118.61 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=74.6
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHcCCCCcEEEE--EcceeeccCCCCceeE
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKVDI 192 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~D~ 192 (379)
+.....++.+|||||||+|.++..+++. ++|+|||+++|+..+++.. .......++.++ ++|+.+++ +++||+
T Consensus 76 ~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~ 151 (276)
T 2wa2_A 76 ERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADT 151 (276)
T ss_dssp HTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred HcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCE
Confidence 3344568899999999999999999988 5999999998423222110 001111268899 99998875 478999
Q ss_pred EEEecCccccCChh-h-H--HHHHHHHHhcccCCE--EEEe
Q 016992 193 IISEWMGYFLLFEN-M-L--NTVLYARDKWLVDDG--IVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~-~-~--~~~l~~~~~~LkpgG--~lip 227 (379)
|+|+.. +...+.. + . ..++..+.++||||| .++.
T Consensus 152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 999865 3322211 1 1 137888999999999 8874
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=116.16 Aligned_cols=111 Identities=16% Similarity=0.082 Sum_probs=81.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-- 184 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 184 (379)
+.+...+...... .+.+|||+|||+|.+++.+|+. +.+|+|+|+++ +++.|+++++.+++ ++++++++|+.++.
T Consensus 200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHH
Confidence 3444444443332 3678999999999999999885 56999999999 99999999999999 47999999998752
Q ss_pred CCC--------------CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 185 LPV--------------TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 185 ~~~--------------~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+.. .+||+|+.+++..++ . ..+.+.|+++|.+++.+|
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~-----~----~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGL-----D----SETEKMVQAYPRILYISC 327 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC-----C----HHHHHHHTTSSEEEEEES
T ss_pred HhhccccccccccccccCCCCEEEECcCcccc-----H----HHHHHHHhCCCEEEEEEC
Confidence 111 279999999763322 1 223455668888875433
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-11 Score=105.34 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.+++.+. +..+|+|+|+++ +++.+++++..++. ...+..+|....+++ +++|+|++..+.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~-~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA-EAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC-CCcchHHHHHHH
Confidence 567799999999999999887 677999999999 99999999999885 488999999888777 799999987655
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++|.+... ...+ ++...|+++|++|
T Consensus 179 h~LE~q~~-~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 179 PLLEREQA-GSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHHST-THHH-HHHHHCBCSEEEE
T ss_pred HHhhhhch-hhHH-HHHHHhcCCCEEE
Confidence 55533222 2333 6667899999988
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=109.61 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCC---chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce
Q 016992 107 TKSYQNVIYQNKFL-FKDKVVLDVGAGT---GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (379)
Q Consensus 107 ~~~~~~~i~~~~~~-~~~~~VLDlGcG~---G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (379)
+..|.......+.. .....|||||||+ |.+...+.+ .+..+|++||.|+ |+..|++++...+. .+++++++|+
T Consensus 62 nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~ 140 (277)
T 3giw_A 62 NRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCT
T ss_pred HHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecc
Confidence 44555544433332 2346899999997 344443443 4557999999999 99999998865432 4799999999
Q ss_pred eeccC----C--CCcee-----EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 181 EEIEL----P--VTKVD-----IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 181 ~~~~~----~--~~~~D-----~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.++.. + ...|| .|+++.+.+++.....+..++..+.+.|+|||+|+.+
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls 199 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMS 199 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEE
Confidence 88521 0 13344 4677766676755444788999999999999999854
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-12 Score=118.55 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=73.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHcCCCCcEEEE--EcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~D~Iv 194 (379)
....++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......++.++ ++|+.+++ +++||+|+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 44568899999999999999999988 5999999998422222110 000111158889 89998875 47899999
Q ss_pred EecCccccCChh-h-H--HHHHHHHHhcccCCE--EEEe
Q 016992 195 SEWMGYFLLFEN-M-L--NTVLYARDKWLVDDG--IVLP 227 (379)
Q Consensus 195 ~~~~~~~l~~~~-~-~--~~~l~~~~~~LkpgG--~lip 227 (379)
|+.. +...+.. + . ..++..+.++||||| .|+.
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 9865 3322211 1 1 137888999999999 8874
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=115.76 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=80.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.+.......++.+|||||||+|.++..+++. +..+++++|+++++. ++++...++.++|+++.+|+. .+++ +||
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D 249 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HAD 249 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCS
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCC-CCCC--CCc
Confidence 3444455667889999999999999999884 456899999976444 333444456678999999996 3344 899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++..+.+.+. ......+++++.+.|||||+++.
T Consensus 250 ~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i 284 (348)
T 3lst_A 250 VHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLV 284 (348)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEE
T ss_pred EEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 999876533331 22336999999999999999984
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=108.41 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=86.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (379)
+.|...+.... .+..+|||||||+|.+++.++.. +..+|+|+|+++ |++.+++++..+|+. .++...|...-++
T Consensus 120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p 195 (281)
T 3lcv_B 120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL 195 (281)
T ss_dssp HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC
T ss_pred HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC
Confidence 34445555433 44679999999999999999885 778999999999 999999999999985 7888888776665
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+ +.+|++++..+..+|..+.. ...+ .+...|+++|++|
T Consensus 196 ~-~~~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 196 D-EPADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp C-SCCSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred C-CCcchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence 5 88999998655444422111 1334 6778899999998
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-11 Score=113.48 Aligned_cols=116 Identities=20% Similarity=0.055 Sum_probs=94.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCC-----CcEEEEEcceeecc-CCCCc
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFS-----NVITVLKGKIEEIE-LPVTK 189 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~-~~~~~ 189 (379)
+...+|.+|||+|||+|+.+.+++..+. +.|+++|+++ .+..+++++++.+.. .++.+...|...+. ...+.
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 5678999999999999999999999643 5899999999 999999999987653 46899999988764 23478
Q ss_pred eeEEEEecCcccc----CC-hh----------------hHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 190 VDIIISEWMGYFL----LF-EN----------------MLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 190 ~D~Iv~~~~~~~l----~~-~~----------------~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
||.|+++.+|++- .. .. .-..+|....++|||||+|++++|++.
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 9999999988762 00 00 114778888999999999999999963
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-11 Score=116.66 Aligned_cols=98 Identities=21% Similarity=0.156 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc---------------CCCCcEEEEEcceeecc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN---------------GFSNVITVLKGKIEEIE 184 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~~ 184 (379)
++.+|||+|||+|.+++.+++. |..+|+++|+++ +++.++++++.+ ++.+ ++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 6789999999999999999985 767899999999 999999999999 8854 999999998763
Q ss_pred CC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.. .++||+|+.++++. ...+++.+.+.|++||.++.
T Consensus 126 ~~~~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~v 162 (378)
T 2dul_A 126 AERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGV 162 (378)
T ss_dssp HHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEEE
Confidence 21 25799999887422 24678888899999997763
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-12 Score=116.67 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=72.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEec----HH-HHHHHHHHHHHcCCCCcEEEEEc-ceeeccCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC----SQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~----s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D 191 (379)
....++.+|||||||+|.++..+++. ++|+|||+ ++ +++.+. .+..+. ++|.++++ |+..++ .++||
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCC--cCCCC
Confidence 34567899999999999999999988 48999999 45 442211 111122 46999999 887764 36899
Q ss_pred EEEEecCccccCChhhH---HHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENML---NTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~---~~~l~~~~~~LkpgG~lip 227 (379)
+|+|++.........+. ..++..+.++|||||.|+.
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99998654311111111 1478888899999998874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-12 Score=114.36 Aligned_cols=95 Identities=17% Similarity=0.030 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+++|||||||+|.++..+++.+ .+|++||+++ +++.|++++.. .++ ..+++++.+|+.+.. ++||+|+++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 356799999999999999988886 8999999999 99999887532 112 257999999998764 789999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.. ++..++..+.+.|+|||+++.
T Consensus 147 ~~--------dp~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 147 QE--------PDIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp SC--------CCHHHHHHHHTTEEEEEEEEE
T ss_pred CC--------ChHHHHHHHHHhcCCCcEEEE
Confidence 42 123488999999999999984
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=109.73 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=81.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-C-----CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-A-----AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~-----~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
..++.+|||+|||+|.++..+++.. . .+|+|+|+++ +++.|+.++...|+ ++.++++|+..... .++||+
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~-~~~fD~ 204 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLL-VDPVDV 204 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCC-CCCEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccc-cCCccE
Confidence 3467899999999999999988742 1 5899999999 99999999988887 48899999876433 478999
Q ss_pred EEEecCccccCChh--------------hH-HHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFEN--------------ML-NTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~--------------~~-~~~l~~~~~~LkpgG~lip 227 (379)
|+++++........ .. ..++..+.+.|+|||++++
T Consensus 205 Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~ 254 (344)
T 2f8l_A 205 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 254 (344)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence 99997632221110 11 2578888999999998873
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=107.26 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=71.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.|.......++.+|||||||+|.++..+++.+ .+|+|||+++ +++.+++++... ++++++++|+.+++++...
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcccCC
Confidence 3445555667788999999999999999999984 5999999999 999999998742 4699999999998877667
Q ss_pred eeEEEEecC
Q 016992 190 VDIIISEWM 198 (379)
Q Consensus 190 ~D~Iv~~~~ 198 (379)
||+|+++++
T Consensus 115 fD~Iv~NlP 123 (295)
T 3gru_A 115 FNKVVANLP 123 (295)
T ss_dssp CSEEEEECC
T ss_pred ccEEEEeCc
Confidence 999999854
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-10 Score=102.84 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=67.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (379)
+.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++... ++++++++|+.+++++.
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccC
Confidence 33445555666788999999999999999999986 5999999999 999999887532 46999999999988763
Q ss_pred CceeEEEEecC
Q 016992 188 TKVDIIISEWM 198 (379)
Q Consensus 188 ~~~D~Iv~~~~ 198 (379)
..| .|+++++
T Consensus 94 ~~~-~vv~nlP 103 (244)
T 1qam_A 94 QSY-KIFGNIP 103 (244)
T ss_dssp CCC-EEEEECC
T ss_pred CCe-EEEEeCC
Confidence 345 5777753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-11 Score=104.36 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..++.+|||||||+|.++..++ .+|+|+|+++. ++.++++|+.++++++++||+|++..+.
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l 125 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL 125 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC
T ss_pred cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc
Confidence 3577899999999999988772 59999999872 3678999999988777899999986542
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+ ..++..++.++.++|+|||.++..
T Consensus 126 ---~-~~~~~~~l~~~~~~L~~gG~l~i~ 150 (215)
T 2zfu_A 126 ---M-GTNIRDFLEEANRVLKPGGLLKVA 150 (215)
T ss_dssp ---C-SSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---c-ccCHHHHHHHHHHhCCCCeEEEEE
Confidence 2 367789999999999999999853
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=109.22 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||||||+|.++..+++ .+..+++++|+ + +++.|++. .+|+++.+|+.+ +++. . |+|++..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~-~-D~v~~~~ 269 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPK-G-DAIFIKW 269 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC-C-SEEEEES
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCC-C-CEEEEec
Confidence 55678999999999999999988 45569999999 7 88877642 469999999987 5653 3 9999876
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+.+ .......+++++++.|||||+++..
T Consensus 270 vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 299 (368)
T 3reo_A 270 ICHDW-SDEHCLKLLKNCYAALPDHGKVIVA 299 (368)
T ss_dssp CGGGB-CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 54333 2344568999999999999998843
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=109.50 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=78.9
Q ss_pred HHHhccC-CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 113 VIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 113 ~i~~~~~-~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+..... ..++.+|||||||+|.++..+++. +..+++++|+ + +++.|++ . .+|+++.+|+.+ +++ .
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~-~- 267 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA-SVP-Q- 267 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT-CCC-C-
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc-CCC-C-
Confidence 3443333 456789999999999999999985 4568999999 7 9888764 2 359999999987 565 3
Q ss_pred eeEEEEecCccccCChhhHH--HHHHHHHhcccCCEEEEec
Q 016992 190 VDIIISEWMGYFLLFENMLN--TVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~--~~l~~~~~~LkpgG~lip~ 228 (379)
||+|++..+.+. ..+.. .+++++.+.|||||+++..
T Consensus 268 ~D~v~~~~~lh~---~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 268 GDAMILKAVCHN---WSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp EEEEEEESSGGG---SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeccccc---CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999998765333 34444 9999999999999998843
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=111.62 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=76.9
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.| .+++++++|+.+.... ++|
T Consensus 31 ~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~-~~f 99 (421)
T 2ih2_A 31 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG-EAF 99 (421)
T ss_dssp HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS-SCE
T ss_pred HHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCcc-CCC
Confidence 333333345679999999999999999984 456999999999 88777 3589999999887543 789
Q ss_pred eEEEEecCccccCCh---------hh------------------HHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFE---------NM------------------LNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~---------~~------------------~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+++++ ++.... .. ...++..+.++|+|||.++.
T Consensus 100 D~Ii~NPP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~ 162 (421)
T 2ih2_A 100 DLILGNPP-YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 162 (421)
T ss_dssp EEEEECCC-CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEECcC-ccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence 99999875 332211 11 12568888999999999873
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=107.84 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=77.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||||||+|.++..+++ .+..+++++|+ + +++.|++. .+|+++.+|+.+ +++. . |+|++..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~-~-D~v~~~~ 267 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPS-G-DTILMKW 267 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC-C-SEEEEES
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCC-C-CEEEehH
Confidence 56678999999999999999988 45669999999 6 88777642 569999999987 6663 3 9999876
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+.+ .......+++++++.|||||+++..
T Consensus 268 vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 268 ILHDW-SDQHCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HhccC-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 53332 2345678999999999999998843
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-12 Score=113.21 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=80.7
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-Ccee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D 191 (379)
+.......++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.|++++. + .++++++++|+.+++++. ++|
T Consensus 21 i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~~~~~~~f- 95 (245)
T 1yub_A 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQFPNKQRY- 95 (245)
T ss_dssp HHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTTCCCSSEE-
T ss_pred HHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcCcccCCCc-
Confidence 4444556788899999999999999999986 6999999999 9999988765 2 257999999999987663 678
Q ss_pred EEEEecCccccCChhhHHHHH--------------HHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVL--------------YARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l--------------~~~~~~LkpgG~lip 227 (379)
.|+++++ |... ...+..++ ..+.++|+|||.++.
T Consensus 96 ~vv~n~P-y~~~-~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 96 KIVGNIP-YHLS-TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp EEEEECC-SSSC-HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred EEEEeCC-cccc-HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 7888764 4432 22333333 457788899987653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=112.84 Aligned_cols=114 Identities=16% Similarity=0.045 Sum_probs=87.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--------------CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEE
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------------GAAHVYAVECSQ-MANMAKQIVEANGFSN-VIT 174 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--------------g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~ 174 (379)
.+.+.+.....++.+|||+|||+|.++..+++. ....++|+|+++ +++.|+.++...|+.. ++.
T Consensus 160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 344554455667889999999999999988873 235899999999 9999999998888742 578
Q ss_pred EEEcceeeccCCCCceeEEEEecCccccCChh---------------hHHHHHHHHHhcccCCEEEE
Q 016992 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLFEN---------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 175 ~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~li 226 (379)
++++|+...+.. .+||+|+++++ ++..... ....++..+.++|||||++.
T Consensus 240 i~~gD~l~~~~~-~~fD~Iv~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a 304 (445)
T 2okc_A 240 IVCEDSLEKEPS-TLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 304 (445)
T ss_dssp EEECCTTTSCCS-SCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred EeeCCCCCCccc-CCcCEEEECCC-CCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEE
Confidence 899998776554 58999999975 3221111 11367888889999999886
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=102.62 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=73.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-Cc
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TK 189 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~ 189 (379)
+.|.......++ +|||||||+|.++..+++.+ .+|+|+|+++ |++.+++++.. .+++++++|+.+++++. ..
T Consensus 37 ~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~~~~ 110 (271)
T 3fut_A 37 RRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEEVPQ 110 (271)
T ss_dssp HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGGSCT
T ss_pred HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhhccC
Confidence 334444556778 99999999999999999986 5999999999 99999988752 56999999999987653 26
Q ss_pred eeEEEEecCccccCChhhHHHHHHH
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYA 214 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~ 214 (379)
+|.|+++++ |.+. .+.+..++..
T Consensus 111 ~~~iv~NlP-y~is-s~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANLP-YHIA-TPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEEC-SSCC-HHHHHHHHHH
T ss_pred ccEEEecCc-cccc-HHHHHHHhcC
Confidence 899999964 5442 2444455543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=102.57 Aligned_cols=85 Identities=13% Similarity=0.255 Sum_probs=68.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC----
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---- 186 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---- 186 (379)
+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++++.. .++++++++|+.+++++
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhcc
Confidence 334445566788999999999999999999986 5999999999 99999998865 25699999999988764
Q ss_pred CCceeEEEEecCcccc
Q 016992 187 VTKVDIIISEWMGYFL 202 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l 202 (379)
.++|| |+++++ |.+
T Consensus 95 ~~~~~-vv~NlP-Y~i 108 (255)
T 3tqs_A 95 DKPLR-VVGNLP-YNI 108 (255)
T ss_dssp SSCEE-EEEECC-HHH
T ss_pred CCCeE-EEecCC-ccc
Confidence 24688 777753 443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=99.81 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=71.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---CCCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~I 193 (379)
....+|.+|||||||. +++|+|+ |++.|+++... +++++++|+.++++ ++++||+|
T Consensus 8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEE
Confidence 3467899999999996 2399999 99999987532 38999999999887 67899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++..+.+++ ..++..+++++.++|||||+++.
T Consensus 68 ~~~~~l~~~--~~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 68 LSGLVPGST--TLHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp EECCSTTCC--CCCCHHHHHHHHHHEEEEEEEEE
T ss_pred EECChhhhc--ccCHHHHHHHHHHHCCCCEEEEE
Confidence 986543332 14568999999999999999986
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=103.68 Aligned_cols=111 Identities=16% Similarity=0.106 Sum_probs=84.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.+..........+|||||||+|.++..+++ .+..+++..|..++++.|++++...+ .++|+++.+|+.+.+. ..+|
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--~~~D 246 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--PEAD 246 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC--CCCS
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC--CCce
Confidence 344445566778999999999999999998 46678999998449999998876544 4789999999976544 4589
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++..+.+.. .......+|+++++.|+|||+++.
T Consensus 247 ~~~~~~vlh~~-~d~~~~~iL~~~~~al~pgg~lli 281 (353)
T 4a6d_A 247 LYILARVLHDW-ADGKCSHLLERIYHTCKPGGGILV 281 (353)
T ss_dssp EEEEESSGGGS-CHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EEEeeeecccC-CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 99976553332 123456889999999999999884
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=112.92 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=88.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcC-------------------------------------------C
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-------------------------------------------A 145 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-------------------------------------------~ 145 (379)
.+..++.......++..|||.+||+|.+++.+|..+ .
T Consensus 177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 445556655666788899999999999999888742 1
Q ss_pred CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEEEEecCccccC--ChhhHHHHHHHHH---h
Q 016992 146 AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFLL--FENMLNTVLYARD---K 217 (379)
Q Consensus 146 ~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~l~--~~~~~~~~l~~~~---~ 217 (379)
.+|+|+|+++ +++.|++++..+|+.+.|++.++|+.++..+ .++||+|+++++ |+.. ....+..+...+. +
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPP-YG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPP-YGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCC-CCC---CCHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCC-ccccccchhHHHHHHHHHHHHHH
Confidence 4799999999 9999999999999988899999999987543 238999999975 5432 2334555555444 4
Q ss_pred cccCCEEEE
Q 016992 218 WLVDDGIVL 226 (379)
Q Consensus 218 ~LkpgG~li 226 (379)
.+.|||.++
T Consensus 336 ~~~~g~~~~ 344 (703)
T 3v97_A 336 NQFGGWNLS 344 (703)
T ss_dssp HHCTTCEEE
T ss_pred hhCCCCeEE
Confidence 445798865
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-10 Score=102.27 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=74.1
Q ss_pred HHHHHHHHH-hccCCCCCCEEEEEcC------CCchHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEE-E
Q 016992 107 TKSYQNVIY-QNKFLFKDKVVLDVGA------GTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITV-L 176 (379)
Q Consensus 107 ~~~~~~~i~-~~~~~~~~~~VLDlGc------G~G~~~~~la~-~g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~-~ 176 (379)
+..+...+. ......++.+|||||| |+|. ..+++ .+ ..+|+|+|+++. + .++++ +
T Consensus 47 y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i 111 (290)
T 2xyq_A 47 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTL 111 (290)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEE
T ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEE
Confidence 333444442 2345678999999999 4476 33444 55 469999999984 1 24788 9
Q ss_pred EcceeeccCCCCceeEEEEecCccc--------cCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 177 KGKIEEIELPVTKVDIIISEWMGYF--------LLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 177 ~~d~~~~~~~~~~~D~Iv~~~~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++|+.+++++ ++||+|++++.... ......+..+++.+.++|||||.|+.
T Consensus 112 ~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 112 IGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp ESCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999988765 78999999753221 11123456899999999999999984
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-10 Score=106.59 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||||||+|.++..+++. +..+++++|+ + +++.|++ . .+++++.+|+.+ +++ .||+|++..
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~p--~~D~v~~~~ 254 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT-SIP--NADAVLLKY 254 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC-CCC--CccEEEeeh
Confidence 456789999999999999999984 4569999999 8 9988765 1 349999999976 555 399999876
Q ss_pred CccccCChhhHHHHHHHHHhcccC---CEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVD---DGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkp---gG~lip~ 228 (379)
+.+.+. ......+++++.+.||| ||+++..
T Consensus 255 ~lh~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 255 ILHNWT-DKDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred hhccCC-HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 544331 12234999999999999 9998843
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-09 Score=90.41 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--CCcEEEEEcceeec---------------
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--SNVITVLKGKIEEI--------------- 183 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--------------- 183 (379)
+.++|||+|| |..++.+|+...++|++||.++ ..+.|+++++++|+ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 4579999998 5788888885357999999999 99999999999998 78999999997543
Q ss_pred c--------C-CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 184 E--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 184 ~--------~-~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+ . ..++||+|+.+.- .....+..+.++|+|||+++..
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~--------k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR--------FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS--------SHHHHHHHHHHHCSSCEEEEET
T ss_pred HHHhhhhhccccCCCCCEEEEeCC--------CchhHHHHHHHhcCCCeEEEEe
Confidence 1 1 1368999997641 1124455566899999999853
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.6e-10 Score=102.25 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=66.5
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CC---CCce
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~---~~~~ 190 (379)
+...++.+|||+|||+|..+..+++. +..+|+|+|.++ |++.|++++..++ ++++++++|+.+++ ++ ..+|
T Consensus 22 L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~ 99 (301)
T 1m6y_A 22 LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKV 99 (301)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred cCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCC
Confidence 44568899999999999999999985 456999999999 9999999998877 57999999998874 11 1579
Q ss_pred eEEEEec
Q 016992 191 DIIISEW 197 (379)
Q Consensus 191 D~Iv~~~ 197 (379)
|.|++++
T Consensus 100 D~Vl~D~ 106 (301)
T 1m6y_A 100 DGILMDL 106 (301)
T ss_dssp EEEEEEC
T ss_pred CEEEEcC
Confidence 9999886
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.1e-10 Score=106.20 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CCCCcEEEEEcceeec-cC-CCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GFSNVITVLKGKIEEI-EL-PVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~-~~-~~~~~D~Iv~~ 196 (379)
+|.+|||+|||+|..++.+++.+. +|++||+++ +++.|+++++.+ |+ ++++++++|+.+. +. +.++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 589999999999999999998764 999999999 999999999998 88 6799999999874 21 22589999998
Q ss_pred cC
Q 016992 197 WM 198 (379)
Q Consensus 197 ~~ 198 (379)
++
T Consensus 171 PP 172 (410)
T 3ll7_A 171 PA 172 (410)
T ss_dssp CE
T ss_pred CC
Confidence 75
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.88 E-value=4e-09 Score=96.72 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCC---EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~---~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
+.|.......++.+|||||||+|.++..+++.+.. +|+|+|+++ |++.++++. ..+++++++|+.++++++
T Consensus 32 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhH
Confidence 33444455678899999999999999999996442 299999999 999999883 257999999999987652
Q ss_pred C------ceeEEEEecC
Q 016992 188 T------KVDIIISEWM 198 (379)
Q Consensus 188 ~------~~D~Iv~~~~ 198 (379)
- ..+.||++++
T Consensus 107 ~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 107 IARPGDEPSLRIIGNLP 123 (279)
T ss_dssp GSCSSSSCCEEEEEECC
T ss_pred hcccccCCceEEEEccC
Confidence 1 2357888853
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-10 Score=101.64 Aligned_cols=79 Identities=27% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-H-------HHHHHHHHHHcCCCCcEEEEEcceeecc--CCC-
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-M-------ANMAKQIVEANGFSNVITVLKGKIEEIE--LPV- 187 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~-------~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~- 187 (379)
...++.+|||+|||+|.+++.+|+.|. +|+|+|+++ + ++.|+++++.+++.++|+++++|+.++. +++
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345678999999999999999999864 999999998 4 4556666666776567999999998752 333
Q ss_pred -CceeEEEEecC
Q 016992 188 -TKVDIIISEWM 198 (379)
Q Consensus 188 -~~~D~Iv~~~~ 198 (379)
++||+|+++++
T Consensus 159 ~~~fD~V~~dP~ 170 (258)
T 2r6z_A 159 QGKPDIVYLDPM 170 (258)
T ss_dssp HCCCSEEEECCC
T ss_pred CCCccEEEECCC
Confidence 58999999875
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-09 Score=100.59 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=74.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..+++. +..+++++|++.+++.|++ . .+|+++.+|+.+ +++ .||+|++..+.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~vl 261 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWVL 261 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESCG
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEcccc
Confidence 45689999999999999999985 4568999999338877664 2 349999999987 555 49999987653
Q ss_pred cccCChhhHHHHHHHHHhcccC---CEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVD---DGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkp---gG~lip 227 (379)
+.+. ......+++++.+.|+| ||+++.
T Consensus 262 h~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i 291 (358)
T 1zg3_A 262 HDWN-DEQSLKILKNSKEAISHKGKDGKVII 291 (358)
T ss_dssp GGSC-HHHHHHHHHHHHHHTGGGGGGCEEEE
T ss_pred cCCC-HHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 3331 12244999999999999 999884
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-09 Score=95.76 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=66.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC--
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-- 187 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 187 (379)
.+.|.......++.+|||||||+|.++..+++.|..+|+|+|+++ +++.++++ + ..+++++++|+.++++++
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~~ 94 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSLG 94 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGSC
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHcc
Confidence 344555556678899999999999999999998767999999999 99999876 1 256999999999887652
Q ss_pred CceeEEEEecCcccc
Q 016992 188 TKVDIIISEWMGYFL 202 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l 202 (379)
..+ .|+++++ |.+
T Consensus 95 ~~~-~vv~NlP-y~i 107 (249)
T 3ftd_A 95 KEL-KVVGNLP-YNV 107 (249)
T ss_dssp SSE-EEEEECC-TTT
T ss_pred CCc-EEEEECc-hhc
Confidence 233 7777754 443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-09 Score=95.02 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=65.7
Q ss_pred HHhccCCCCC--CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC--------CCCcEEEEEcceee
Q 016992 114 IYQNKFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG--------FSNVITVLKGKIEE 182 (379)
Q Consensus 114 i~~~~~~~~~--~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~--------~~~~i~~~~~d~~~ 182 (379)
+.+.....++ .+|||+|||+|..++.+|..|. +|++||.++ ++..++++++... +.++++++++|+.+
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 3334445566 8999999999999999999876 799999999 9888888765431 32469999999988
Q ss_pred cc--CCCCceeEEEEecC
Q 016992 183 IE--LPVTKVDIIISEWM 198 (379)
Q Consensus 183 ~~--~~~~~~D~Iv~~~~ 198 (379)
+. ++ .+||+|+++++
T Consensus 157 ~L~~~~-~~fDvV~lDP~ 173 (258)
T 2oyr_A 157 ALTDIT-PRPQVVYLDPM 173 (258)
T ss_dssp HSTTCS-SCCSEEEECCC
T ss_pred HHHhCc-ccCCEEEEcCC
Confidence 52 23 47999999986
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.5e-09 Score=103.71 Aligned_cols=113 Identities=13% Similarity=-0.027 Sum_probs=83.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc----C---------------CCEEEEEecHH-HHHHHHHHHHHcCCCC-
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECSQ-MANMAKQIVEANGFSN- 171 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~----g---------------~~~v~~vD~s~-~~~~a~~~~~~~~~~~- 171 (379)
.+.+.....++.+|||.|||+|.+++.+++. + ...++|+|+++ ++..|+.++...|+..
T Consensus 160 ~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 160 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 3444445567889999999999999888763 1 13799999999 9999999998888753
Q ss_pred ---cEEEEEcceeecc-CCCCceeEEEEecCccccCCh------------hhHHHHHHHHHhcccCCEEEE
Q 016992 172 ---VITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFE------------NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 172 ---~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~------------~~~~~~l~~~~~~LkpgG~li 226 (379)
.+.++++|....+ .+..+||+|+++++ +..... ..-..++..+.++|+|||++.
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPP-f~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 309 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 309 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCCeEeCCCcccccccccCCeEEEECCC-cccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEE
Confidence 2778999976543 23468999999975 332211 112367888889999999876
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-09 Score=96.04 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=63.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCE--EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~--v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (379)
+.|.+.....++.+|||||||+|.++. +++. .+ |+|+|+++ |++.+++++... ++++++++|+.++++++
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~~--~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVGE--RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHHT--TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHH
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhhC--CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHh
Confidence 334444556788899999999999999 7653 36 99999999 999999876532 46999999999876541
Q ss_pred ----CceeEEEEecCcccc
Q 016992 188 ----TKVDIIISEWMGYFL 202 (379)
Q Consensus 188 ----~~~D~Iv~~~~~~~l 202 (379)
+..|+|+++++ |.+
T Consensus 85 ~~~~~~~~~vvsNlP-Y~i 102 (252)
T 1qyr_A 85 AEKMGQPLRVFGNLP-YNI 102 (252)
T ss_dssp HHHHTSCEEEEEECC-TTT
T ss_pred hcccCCceEEEECCC-CCc
Confidence 23478888864 443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-08 Score=90.94 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--C-C-CCcEEEEEcceeeccC-CCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--G-F-SNVITVLKGKIEEIEL-PVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~--~-~-~~~i~~~~~d~~~~~~-~~~~~D~I 193 (379)
...++||-||.|.|..+..+.+. +..+|+.||+++ +++.|++.+... + + ..+++++.+|+..+-. ..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45679999999999999999995 568999999999 999999987542 1 1 3679999999987642 25789999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+.......... .-..+++.+.+.|+|||+++.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 9986432211111 124788899999999999984
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-08 Score=88.80 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=69.8
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..+.++.+|||||||+|.++..+++. +...|+|+|+.. +....... ...++ ++..+..++....++.++||+|+|
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~dv~~l~~~~~DlVls 146 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKTDIHRLEPVKCDTLLC 146 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC--CeEEEeccceehhcCCCCccEEEe
Confidence 55678889999999999999998874 677889998874 31000000 00011 344456666555566689999999
Q ss_pred ecCccccCChhhH-----HHHHHHHHhcccCC-EEEEe
Q 016992 196 EWMGYFLLFENML-----NTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~-----~~~l~~~~~~Lkpg-G~lip 227 (379)
+.... .+.... -.+++.+.++|+|| |.|+.
T Consensus 147 D~apn--sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 147 DIGES--SSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCCCC--CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCccC--cCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 87544 121111 13467888999999 99983
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.3e-08 Score=98.91 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=80.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--------C--------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------G--------AAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--------g--------~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (379)
.|.......++ +|||.|||+|.+.+.+++. + ...++|+|+++ ++.+|+.++...|+..++.+
T Consensus 236 lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i 314 (544)
T 3khk_A 236 LIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGK 314 (544)
T ss_dssp HHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCS
T ss_pred HHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccce
Confidence 34433344444 9999999999998877542 0 34899999999 99999999999888765555
Q ss_pred EEcceeecc-CCCCceeEEEEecCccccCC--------------------------hh-hHHHHHHHHHhcccCCEEEE
Q 016992 176 LKGKIEEIE-LPVTKVDIIISEWMGYFLLF--------------------------EN-MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 176 ~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~--------------------------~~-~~~~~l~~~~~~LkpgG~li 226 (379)
.++|....+ .+..+||+|+++++ |.... .. .--.++..+.+.|+|||++.
T Consensus 315 ~~gDtL~~~~~~~~~fD~Iv~NPP-f~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 315 KNADSFLDDQHPDLRADFVMTNPP-FNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp SSCCTTTSCSCTTCCEEEEEECCC-SSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred eccchhcCcccccccccEEEECCC-cCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 888876543 33578999999975 43210 00 01257888889999999876
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=94.74 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=82.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeec--c-CCCCce
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI--E-LPVTKV 190 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~----g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--~-~~~~~~ 190 (379)
..++.+|||.|||+|.+.+.+++. +...++|+|+++ ++.+|+.++...|+. +++.+.++|.... + ....+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 357789999999999998888874 346999999999 999999999988885 4689999998765 2 235789
Q ss_pred eEEEEecCccccCCh--------------h------h-HHHHHHHHHhccc-CCEEEE
Q 016992 191 DIIISEWMGYFLLFE--------------N------M-LNTVLYARDKWLV-DDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~--------------~------~-~~~~l~~~~~~Lk-pgG~li 226 (379)
|+|+++|+ |..... + . --.++..+.+.|+ |||++.
T Consensus 299 D~IvaNPP-f~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 299 DGVLMNPP-YSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp SEEEECCC-TTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred cEEEecCC-cCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 99999975 322110 0 0 0147888889999 999875
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=89.64 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
+.+|.+||||||++|+++..+++.|. +|+|||+.+|-..... . .+|+++++|+..+..+..+||+|+|++.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~----~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMD----T---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHT----T---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhcc----C---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 57899999999999999999999875 9999998773332221 1 4699999999988776678999999864
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.3e-07 Score=82.39 Aligned_cols=119 Identities=9% Similarity=0.075 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc------CCCEEEEEecH--------------------------
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECS-------------------------- 154 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~------g~~~v~~vD~s-------------------------- 154 (379)
...+...+...........|||+|+..|..++.++.. ...+|+++|..
T Consensus 91 ~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~ 170 (282)
T 2wk1_A 91 LENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVL 170 (282)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccc
Confidence 3333333333222344569999999999998888763 25689999953
Q ss_pred H-HHHHHHHHHHHcCCC-CcEEEEEcceeecc--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 155 Q-MANMAKQIVEANGFS-NVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 155 ~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
. .++.+++++++.|+. ++|+++.+|+.+.- ++.++||+|+.+. + . + ......+..+...|+|||+++....
T Consensus 171 ~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D--~-y-~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 171 AVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-D--L-Y-ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-C--S-H-HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred hhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-C--c-c-ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 2 467789999999984 88999999997742 3346899999764 1 1 1 2345788899999999999997654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-08 Score=88.56 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=67.8
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..+.++.+|||||||+|.++..+++ .++..|+|+|+.. +...+... ...+ .++..+..++....++..++|+|+|
T Consensus 86 ~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~~~~DvVLS 162 (282)
T 3gcz_A 86 GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNMEVIPGDTLLC 162 (282)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSCCCCCSEEEE
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcCCCCcCEEEe
Confidence 3567888999999999999999886 5778899999975 42222100 0011 1233334333333455689999999
Q ss_pred ecCccccCChhhH-----HHHHHHHHhcccCC--EEEE
Q 016992 196 EWMGYFLLFENML-----NTVLYARDKWLVDD--GIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~-----~~~l~~~~~~Lkpg--G~li 226 (379)
+.... .+.... ..+++-+.++|+|| |.|+
T Consensus 163 DmApn--sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv 198 (282)
T 3gcz_A 163 DIGES--SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFC 198 (282)
T ss_dssp CCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred cCccC--CCChHHHHHHHHHHHHHHHHHcCCCCCCcEE
Confidence 96544 221211 13577778999999 9988
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-07 Score=87.21 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=84.5
Q ss_pred HHHHHHHhcc-CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---CC----CCcEEEEEcc
Q 016992 109 SYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---GF----SNVITVLKGK 179 (379)
Q Consensus 109 ~~~~~i~~~~-~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~---~~----~~~i~~~~~d 179 (379)
.|.+.+.... ...++++||-||.|.|..+..+.+.+..+|+.||+++ +++.|++.+... .+ .++++++.+|
T Consensus 191 ~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~D 270 (381)
T 3c6k_A 191 AYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIED 270 (381)
T ss_dssp HHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESC
T ss_pred HHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHH
Confidence 3444454322 1235689999999999999999997778999999999 999999875321 11 1458999999
Q ss_pred eeecc----CCCCceeEEEEecCccccCC------h-hhHHHHHHHHHhcccCCEEEEe
Q 016992 180 IEEIE----LPVTKVDIIISEWMGYFLLF------E-NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 180 ~~~~~----~~~~~~D~Iv~~~~~~~l~~------~-~~~~~~l~~~~~~LkpgG~lip 227 (379)
+..+- ...++||+|+.+........ . -....+++.+.+.|+|||+++.
T Consensus 271 a~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 271 CIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 87653 12368999999854321110 0 1125778889999999999984
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.7e-07 Score=92.11 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C---CCEEEEEecHH-HHHHH--HHHHHHcCCC---CcEEEEEcceeecc-CCCCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECSQ-MANMA--KQIVEANGFS---NVITVLKGKIEEIE-LPVTK 189 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g---~~~v~~vD~s~-~~~~a--~~~~~~~~~~---~~i~~~~~d~~~~~-~~~~~ 189 (379)
.++.+|||.|||+|.+++.+++. + ..+++|+|+++ +++.| +.++..+++. ....+...|+.... ....+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 46789999999999999999884 3 24799999999 99999 5554432221 12355566665532 22478
Q ss_pred eeEEEEecCccccCC-hh--------------------------hHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLF-EN--------------------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~-~~--------------------------~~~~~l~~~~~~LkpgG~li 226 (379)
||+||++++ |+... .. ....++..+.++|+|||++.
T Consensus 400 FDVVIgNPP-Yg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLA 462 (878)
T 3s1s_A 400 VSVVVMNPP-YVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVIS 462 (878)
T ss_dssp EEEEEECCB-CCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEE
T ss_pred CCEEEECCC-ccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEE
Confidence 999999975 43211 00 12346777889999999976
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.2e-07 Score=80.26 Aligned_cols=106 Identities=21% Similarity=0.152 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-------CC------CEEEEEecHH---------------HHHHHHHHHHHc-----
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-------GA------AHVYAVECSQ---------------MANMAKQIVEAN----- 167 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-------g~------~~v~~vD~s~---------------~~~~a~~~~~~~----- 167 (379)
.++.+|||+|+|+|..++.+++. +. .+|+++|..+ +...|++.++..
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35579999999999887776542 22 4899999753 223566665541
Q ss_pred -----CCC---CcEEEEEcceeec-c-CCC---CceeEEEEecCccccCChh-hHHHHHHHHHhcccCCEEEEe
Q 016992 168 -----GFS---NVITVLKGKIEEI-E-LPV---TKVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 168 -----~~~---~~i~~~~~d~~~~-~-~~~---~~~D~Iv~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (379)
.+. .+++++.+|+.+. + ++. ..||+|+.+.+...- +.. .-..++..+.++|+|||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-CGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-ChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 111 3588999999874 3 221 279999987532111 112 136789999999999999983
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-07 Score=79.11 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=70.0
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~Iv 194 (379)
..+.++.+||||||++|.++..++. .|+.+|+|+|+-. -.+ --..++..|+ +.|+|.++ |+..++. .++|.|+
T Consensus 74 ~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-~P~~~~s~gw-n~v~fk~gvDv~~~~~--~~~Dtll 149 (267)
T 3p8z_A 74 NMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-EPVPMSTYGW-NIVKLMSGKDVFYLPP--EKCDTLL 149 (267)
T ss_dssp TSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCCTTT-TSEEEECSCCGGGCCC--CCCSEEE
T ss_pred cCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-CcchhhhcCc-CceEEEeccceeecCC--ccccEEE
Confidence 3667889999999999999998887 5888999999865 111 0001123455 56999999 9866543 6799999
Q ss_pred EecCccccCChhhH---HHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENML---NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~---~~~l~~~~~~LkpgG~li 226 (379)
|+.-.+.-.-+-+- -.+|+-+.++|++ |-++
T Consensus 150 cDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 150 CDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEE
T ss_pred EecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEE
Confidence 98532111101111 2367777899998 4443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-07 Score=83.36 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=68.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
+...+ ..+.++.+||||||++|.++..+++ .|+..|+|+|+.. +...... ....+. +.+.+ ..++.-..+..++
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~-~~~~di~~l~~~~ 147 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKF-KDKSNVFTMPTEP 147 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEE-ECSCCTTTSCCCC
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEe-ecCceeeecCCCC
Confidence 33344 4456889999999999999999998 4777899999864 3111000 000011 22333 3333323344578
Q ss_pred eeEEEEecCccccCChhhH-----HHHHHHHHhcccCC-EEEE
Q 016992 190 VDIIISEWMGYFLLFENML-----NTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~-----~~~l~~~~~~Lkpg-G~li 226 (379)
+|+|+|+.... .+.... ..++.-+.++|+|| |.|+
T Consensus 148 ~DlVlsD~APn--sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV 188 (300)
T 3eld_A 148 SDTLLCDIGES--SSNPLVERDRTMKVLENFERWKHVNTENFC 188 (300)
T ss_dssp CSEEEECCCCC--CSSHHHHHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred cCEEeecCcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 99999986544 222221 24577778999999 9998
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=78.51 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=62.7
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCCce
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (379)
.+.+.++..+||++||.|..+..+++. ..+|+|+|.++ +++.|++ +.. ++++++++++.++. ...+++
T Consensus 17 ~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~v 90 (285)
T 1wg8_A 17 LLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERV 90 (285)
T ss_dssp HHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred hhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCc
Confidence 345678899999999999999999998 45999999999 9999988 543 47999999998874 123579
Q ss_pred eEEEEec
Q 016992 191 DIIISEW 197 (379)
Q Consensus 191 D~Iv~~~ 197 (379)
|.|++++
T Consensus 91 DgIL~DL 97 (285)
T 1wg8_A 91 DGILADL 97 (285)
T ss_dssp EEEEEEC
T ss_pred CEEEeCC
Confidence 9999874
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.5e-06 Score=69.16 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G-~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (379)
.+.+.|.+. ..++.+|||||||+| ..+..+++ .|. .|+++|+++ .++ +++.|+.+..+
T Consensus 24 ~LaeYI~~~--~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~ 84 (153)
T 2k4m_A 24 DLAVYIIRC--SGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRM 84 (153)
T ss_dssp HHHHHHHHH--SCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCH
T ss_pred HHHHHHHhc--CCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCcc
Confidence 344455543 245679999999999 59999998 776 899999998 544 78888877443
Q ss_pred C-CCceeEEEEe
Q 016992 186 P-VTKVDIIISE 196 (379)
Q Consensus 186 ~-~~~~D~Iv~~ 196 (379)
. -+.||+|.+-
T Consensus 85 ~~Y~~~DLIYsi 96 (153)
T 2k4m_A 85 EIYRGAALIYSI 96 (153)
T ss_dssp HHHTTEEEEEEE
T ss_pred cccCCcCEEEEc
Confidence 2 1489999763
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.6e-06 Score=73.43 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=69.4
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceeeccCCCCceeE
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDI 192 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~ 192 (379)
+...+.++.+||||||++|.++..++. .|+.+|+|+|+-. -.+. -..++..++ +-|.+..+ |+..++. .++|+
T Consensus 88 ~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~~--~~~D~ 163 (321)
T 3lkz_A 88 ERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRPS--ECCDT 163 (321)
T ss_dssp HTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSCC--CCCSE
T ss_pred HhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCCC--CCCCE
Confidence 335667888999999999999998777 5888999999864 1100 000012233 34888887 8776654 67999
Q ss_pred EEEecCccccCChhhH-----HHHHHHHHhcccCC-EEEE
Q 016992 193 IISEWMGYFLLFENML-----NTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~-----~~~l~~~~~~Lkpg-G~li 226 (379)
|+|+. +..-.. ... -.+|+-+.++|++| |-|+
T Consensus 164 ivcDi-geSs~~-~~ve~~Rtl~vLel~~~wL~~~~~~f~ 201 (321)
T 3lkz_A 164 LLCDI-GESSSS-AEVEEHRTIRVLEMVEDWLHRGPREFC 201 (321)
T ss_dssp EEECC-CCCCSC-HHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEC-ccCCCC-hhhhhhHHHHHHHHHHHHhccCCCcEE
Confidence 99985 322111 111 23677778999988 6655
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.1e-06 Score=72.37 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=63.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CC----CEEEEEe--cHHHHHHHHHHHHHcCCCCcEEEEEc-ceeeccCCCCc
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA----AHVYAVE--CSQMANMAKQIVEANGFSNVITVLKG-KIEEIELPVTK 189 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~----~~v~~vD--~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 189 (379)
.-+.+|.+||||||++|.++..+++. +. +.|+|+| +.++... ..|+ +-+++.++ |+.++. ..+
T Consensus 69 ~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~------~~Gv-~~i~~~~G~Df~~~~--~~~ 139 (269)
T 2px2_A 69 RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ------SYGW-NIVTMKSGVDVFYKP--SEI 139 (269)
T ss_dssp TSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC------STTG-GGEEEECSCCGGGSC--CCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc------CCCc-eEEEeeccCCccCCC--CCC
Confidence 35678999999999999999999885 33 3455555 2221000 0121 23566667 998753 368
Q ss_pred eeEEEEecCccccCChhhHH-----HHHHHHHhcccCCE-EEE
Q 016992 190 VDIIISEWMGYFLLFENMLN-----TVLYARDKWLVDDG-IVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~-----~~l~~~~~~LkpgG-~li 226 (379)
+|+|+|++... .+....+ .+|+-+.++|+||| .|+
T Consensus 140 ~DvVLSDMAPn--SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 140 SDTLLCDIGES--SPSAEIEEQRTLRILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp CSEEEECCCCC--CSCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCEEEeCCCCC--CCccHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 99999996543 2222221 25666678999999 776
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=5e-05 Score=72.08 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHH---------c-------CCCEEEEEecHH-HHHHHHHHHHHc-----------CCCCcEE
Q 016992 123 DKVVLDVGAGTGILSLFCAK---------A-------GAAHVYAVECSQ-MANMAKQIVEAN-----------GFSNVIT 174 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~---------~-------g~~~v~~vD~s~-~~~~a~~~~~~~-----------~~~~~i~ 174 (379)
..+|+|+|||+|..++.+.. . +.-+|+.-|+.. .....-+.+... +...+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 57899999999988887732 1 124777888766 332222222211 0000111
Q ss_pred EEE---cceeeccCCCCceeEEEEecCccccCChh-----------------------------------hHHHHHHHHH
Q 016992 175 VLK---GKIEEIELPVTKVDIIISEWMGYFLLFEN-----------------------------------MLNTVLYARD 216 (379)
Q Consensus 175 ~~~---~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~-----------------------------------~~~~~l~~~~ 216 (379)
|+. +....-.+|.+++|+|+|....+.+...+ ++..+|+.+.
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 33333346779999999987656554211 5567899999
Q ss_pred hcccCCEEEEe
Q 016992 217 KWLVDDGIVLP 227 (379)
Q Consensus 217 ~~LkpgG~lip 227 (379)
+.|+|||+++.
T Consensus 213 ~eL~pGG~mvl 223 (374)
T 3b5i_A 213 AEVKRGGAMFL 223 (374)
T ss_dssp HHEEEEEEEEE
T ss_pred HHhCCCCEEEE
Confidence 99999999984
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=79.28 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=64.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc----C----------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~----g----------~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (379)
.+.+.+.....++.+|+|-+||+|.+...+.+. . ...++|+|+++ +..+|+-++--.|+. .-.+
T Consensus 206 v~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRI 284 (530)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEE
T ss_pred HHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cccc
Confidence 344455555677889999999999998877652 1 13699999999 999999888877774 3467
Q ss_pred EEcceeeccC----CCCceeEEEEecC
Q 016992 176 LKGKIEEIEL----PVTKVDIIISEWM 198 (379)
Q Consensus 176 ~~~d~~~~~~----~~~~~D~Iv~~~~ 198 (379)
.++|....+. +..+||+|+++|+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCC
T ss_pred cccccccCchhhhcccccceEEEecCC
Confidence 7777655432 1357999999975
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.3e-05 Score=71.31 Aligned_cols=47 Identities=34% Similarity=0.357 Sum_probs=43.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG 168 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~ 168 (379)
.+|..|||++||+|.+++.+++.|. +++|+|+++ +++.|++++....
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence 6889999999999999999999875 999999999 9999999997753
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=65.96 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=68.8
Q ss_pred HHHHHHHHHHh-ccCCCCCCEEEEEcC------CCchHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHcCCCCcEEEE
Q 016992 106 RTKSYQNVIYQ-NKFLFKDKVVLDVGA------GTGILSLFCAKAGA--AHVYAVECSQMANMAKQIVEANGFSNVITVL 176 (379)
Q Consensus 106 r~~~~~~~i~~-~~~~~~~~~VLDlGc------G~G~~~~~la~~g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~ 176 (379)
.+..+.+.+.. ......|.+|||+|+ .+|. ..+.+.+. ..|+++|+.++.. ..+ .++
T Consensus 92 kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s----------da~--~~I 157 (344)
T 3r24_A 92 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS----------DAD--STL 157 (344)
T ss_dssp HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC----------SSS--EEE
T ss_pred HHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc----------CCC--eEE
Confidence 34444444532 345677999999997 5676 34444433 3999999988211 112 459
Q ss_pred EcceeeccCCCCceeEEEEecCccccC--------ChhhHHHHHHHHHhcccCCEEEE
Q 016992 177 KGKIEEIELPVTKVDIIISEWMGYFLL--------FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 177 ~~d~~~~~~~~~~~D~Iv~~~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++|...+... .+||+|+|++...--. .....+.+++-+.+.|+|||.|+
T Consensus 158 qGD~~~~~~~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 158 IGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp ESCGGGEEES-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred EccccccccC-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 9998766554 8899999985322111 11235667777888999999998
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.9e-05 Score=71.23 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHc------------------CCCEEEEEecH-----------H-HHHHHHHHHHHcCCCCc
Q 016992 123 DKVVLDVGAGTGILSLFCAKA------------------GAAHVYAVECS-----------Q-MANMAKQIVEANGFSNV 172 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~------------------g~~~v~~vD~s-----------~-~~~~a~~~~~~~~~~~~ 172 (379)
..+|+|+|||+|..++.+... +.-+|+.-|+. + +.+.+ .+..|-..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~---~~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNL---EKENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHH---HHHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhh---hhhccCCCC
Confidence 478999999999888876543 11367788865 2 22221 122332112
Q ss_pred EEEEEcceee---ccCCCCceeEEEEecCccccCChh------------------------------------hHHHHHH
Q 016992 173 ITVLKGKIEE---IELPVTKVDIIISEWMGYFLLFEN------------------------------------MLNTVLY 213 (379)
Q Consensus 173 i~~~~~d~~~---~~~~~~~~D~Iv~~~~~~~l~~~~------------------------------------~~~~~l~ 213 (379)
-.|+.+.... -.++.+++|+|+|....+.+...+ ++..+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444 347789999999986555543321 1234488
Q ss_pred HHHhcccCCEEEEe
Q 016992 214 ARDKWLVDDGIVLP 227 (379)
Q Consensus 214 ~~~~~LkpgG~lip 227 (379)
.+.+.|+|||+++.
T Consensus 210 ~Ra~eL~pGG~mvl 223 (384)
T 2efj_A 210 IHSEELISRGRMLL 223 (384)
T ss_dssp HHHHHEEEEEEEEE
T ss_pred HHHHHhccCCeEEE
Confidence 88999999999984
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00027 Score=65.47 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=62.1
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CC--
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP-- 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~-- 186 (379)
+...+...+|..++|..||.|..+..+++. | .++|+|+|.++ +++.|+ ++ ..+++++++++..++. ++
T Consensus 49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhc
Confidence 334456688999999999999999999984 3 47999999999 999884 33 2368999999988864 11
Q ss_pred --CCceeEEEEec
Q 016992 187 --VTKVDIIISEW 197 (379)
Q Consensus 187 --~~~~D~Iv~~~ 197 (379)
.+++|.|+.++
T Consensus 124 g~~~~vDgILfDL 136 (347)
T 3tka_A 124 DLIGKIDGILLDL 136 (347)
T ss_dssp TCTTCEEEEEEEC
T ss_pred CCCCcccEEEECC
Confidence 13699999874
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00026 Score=63.92 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF 169 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~ 169 (379)
.+|..|||..||+|..+..+.+.|. +++|+|+++ .++.|++++..+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence 6889999999999999999999875 999999999 99999999986653
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=69.02 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHc------------C-----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce---
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--- 180 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~------------g-----~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--- 180 (379)
...+|+|+||++|..++.+... + .-+|+..|+.. ....+-+.+....-..+-.|+.+..
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3457999999999766644321 1 24788999887 6665555443211001224444443
Q ss_pred eeccCCCCceeEEEEecCccccCC------------------------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 181 EEIELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 181 ~~~~~~~~~~D~Iv~~~~~~~l~~------------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..-.++.+++|+|+|....+.+.. ..++..+|+.+.+.|+|||+++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 334577899999999765444432 12456779999999999999984
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00042 Score=65.14 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=59.1
Q ss_pred HhhcCHHHHHHHHHHHHhccCCC------CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC
Q 016992 99 EMLKDVVRTKSYQNVIYQNKFLF------KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS 170 (379)
Q Consensus 99 ~~l~d~~r~~~~~~~i~~~~~~~------~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~ 170 (379)
.+|.|..-.+...+++. +. ++..|||||.|.|.++..+++. .+++|++||++. ++...++.. . .
T Consensus 33 nFL~d~~i~~~Iv~~~~----l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~ 104 (353)
T 1i4w_A 33 KYLWNPTVYNKIFDKLD----LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---G 104 (353)
T ss_dssp CCBCCHHHHHHHHHHHC----GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---T
T ss_pred CccCCHHHHHHHHHhcc----CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---C
Confidence 35556654545444443 22 4689999999999999999985 457999999999 999988876 2 2
Q ss_pred CcEEEEEcceeecc
Q 016992 171 NVITVLKGKIEEIE 184 (379)
Q Consensus 171 ~~i~~~~~d~~~~~ 184 (379)
++++++++|+.++.
T Consensus 105 ~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 105 SPLQILKRDPYDWS 118 (353)
T ss_dssp SSCEEECSCTTCHH
T ss_pred CCEEEEECCccchh
Confidence 57999999997653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00011 Score=66.53 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=78.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-c--
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E-- 184 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-- 184 (379)
.|...|.. ..+..+||+-+|||.+++.+.+ +..+++.||.++ .++..++++.. .+++++++.|.... .
T Consensus 82 ~yf~~l~~----~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l 153 (283)
T 2oo3_A 82 EYISVIKQ----INLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNAL 153 (283)
T ss_dssp HHHHHHHH----HSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHH----hcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHh
Confidence 45555554 2355689999999999999888 457999999999 99999888864 26799999997542 1
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHh--cccCCEEEE
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDK--WLVDDGIVL 226 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~--~LkpgG~li 226 (379)
.+..+||+|+.+++ |.. ..+...++..+.+ .+.|+|+++
T Consensus 154 ~~~~~~fdLVfiDPP-Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v 195 (283)
T 2oo3_A 154 LPPPEKRGLIFIDPS-YER--KEEYKEIPYAIKNAYSKFSTGLYC 195 (283)
T ss_dssp CSCTTSCEEEEECCC-CCS--TTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred cCCCCCccEEEECCC-CCC--CcHHHHHHHHHHHhCccCCCeEEE
Confidence 23357999999974 432 1355666655544 467889887
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00092 Score=63.59 Aligned_cols=74 Identities=24% Similarity=0.099 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--------CCCceeEEE
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTKVDIII 194 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~D~Iv 194 (379)
.+|+||.||.|++++.+.++|...|.++|+++ +++..+.++. ...++++|+.++.. ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 47999999999999999999988889999999 8887776642 35788899987642 236799999
Q ss_pred EecCccccC
Q 016992 195 SEWMGYFLL 203 (379)
Q Consensus 195 ~~~~~~~l~ 203 (379)
..++|..+.
T Consensus 77 ggpPCQ~fS 85 (376)
T 3g7u_A 77 GGPPCQGFS 85 (376)
T ss_dssp ECCCCCTTC
T ss_pred ecCCCCCcc
Confidence 988776554
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00094 Score=62.30 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~ 199 (379)
.+.+|+|+.||.|.+++.+.++|...|.++|+++ +++..+.++... . ++|+.++... ...+|+|+..++|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gpPC 81 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGFPC 81 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEECCC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECCCC
Confidence 4579999999999999999999998899999999 988888876421 1 6788776422 2358999998876
Q ss_pred cccC
Q 016992 200 YFLL 203 (379)
Q Consensus 200 ~~l~ 203 (379)
..+.
T Consensus 82 Q~fS 85 (327)
T 2c7p_A 82 QAFS 85 (327)
T ss_dssp TTTC
T ss_pred CCcc
Confidence 6553
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00044 Score=65.01 Aligned_cols=73 Identities=21% Similarity=0.149 Sum_probs=55.9
Q ss_pred CEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---CCCceeEEEEec
Q 016992 124 KVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISEW 197 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~Iv~~~ 197 (379)
.+|+|+.||.|.+++.+.++| ...|+++|+++ +++..+.++.. ..++++|+.++.. +...+|+|+..+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 479999999999999999988 56899999999 98888887532 3477889888742 112689999988
Q ss_pred Ccccc
Q 016992 198 MGYFL 202 (379)
Q Consensus 198 ~~~~l 202 (379)
+|..+
T Consensus 77 PCq~f 81 (343)
T 1g55_A 77 PCQPF 81 (343)
T ss_dssp C----
T ss_pred CCcch
Confidence 75544
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0098 Score=55.50 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcC---------------
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--------------- 168 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~--------------- 168 (379)
.|+..+.+.+.+.+...+...|+.||||.......+... +...++-||..++++.-++.+...+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 355555555544332245679999999999888888763 4457888888447777777776652
Q ss_pred -----CCCcEEEEEcceeecc--------C-CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 169 -----FSNVITVLKGKIEEIE--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 169 -----~~~~i~~~~~d~~~~~--------~-~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+++..++.+|+.+.. . ......+++++.+..++. +.....+++.+...+ |+|.++
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH-NNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEE
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhC-CCcEEE
Confidence 1367999999988742 1 225679999998766654 456678888888776 677664
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0093 Score=56.38 Aligned_cols=98 Identities=23% Similarity=0.284 Sum_probs=64.7
Q ss_pred HHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-----cC
Q 016992 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----EL 185 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~ 185 (379)
+.......+|.+||.+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++. |.. .++..+-.++ ..
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHh
Confidence 33445678899999999886 778888888 5877899999998 88887643 432 1222211111 01
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.+|+|+-. .+ . ...+....+.|+++|+++.
T Consensus 255 ~~gg~D~vid~-~g----~----~~~~~~~~~~l~~~G~iv~ 287 (371)
T 1f8f_A 255 TDGGVNFALES-TG----S----PEILKQGVDALGILGKIAV 287 (371)
T ss_dssp TTSCEEEEEEC-SC----C----HHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCcEEEEC-CC----C----HHHHHHHHHHHhcCCEEEE
Confidence 12379999843 21 1 2456667789999999873
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0096 Score=57.22 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHH-Hc-C-CCEEEEEecHH-HHHHHHHHHHH--cCCC-CcEEEEEcceee
Q 016992 120 LFKDKVVLDVGAGTGILSLFCA-KA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFS-NVITVLKGKIEE 182 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la-~~-g-~~~v~~vD~s~-~~~~a~~~~~~--~~~~-~~i~~~~~d~~~ 182 (379)
..++.+|+|+||+.|..+..++ +. + .++|+++|+++ ..+..+++++. |+.. .++++++.-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 3688999999999999999888 43 4 37999999999 99999999998 4333 578888765543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0074 Score=56.16 Aligned_cols=73 Identities=8% Similarity=0.039 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHcCC--CEE-EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---CCCceeEEEE
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGA--AHV-YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIIS 195 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~--~~v-~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~Iv~ 195 (379)
..+|+|+.||.|++++.+.++|. ..| .++|+++ +++..+.++.. . ++++|+.++.. +...+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~--~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E--VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C--CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C--cccCChhhcCHHHhccCCCCEEEe
Confidence 45899999999999999999884 677 8999999 88888877632 1 56778877642 2236899999
Q ss_pred ecCcccc
Q 016992 196 EWMGYFL 202 (379)
Q Consensus 196 ~~~~~~l 202 (379)
.++|..+
T Consensus 83 gpPCQ~f 89 (327)
T 3qv2_A 83 SPPCQPY 89 (327)
T ss_dssp CCCCTTC
T ss_pred cCCccCc
Confidence 8876665
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.009 Score=57.08 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=64.1
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-----c--CC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----E--LP 186 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~--~~ 186 (379)
.....+|.+||.+|||. |.++..+|+ .|+.+|+++|.++ .++.+++ .|. .++..+-.++ . ..
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQILG 251 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHHS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHhC
Confidence 35678999999999986 788888888 6877999999998 8877754 343 2232211111 0 11
Q ss_pred CCceeEEEEecCccccC-C-----hhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLL-F-----ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~-~-----~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|+|+-. .+.... + .......+....+.|++||+++.
T Consensus 252 g~g~Dvvid~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 252 KPEVDCGVDA-VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp SSCEEEEEEC-SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred CCCCCEEEEC-CCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 2369999853 221100 0 00012356667789999999873
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=53.93 Aligned_cols=77 Identities=16% Similarity=0.035 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCE--EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC----CCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----VTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~--v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~D~I 193 (379)
..+.+|+|+-||.|++++.+.++|... |.++|+++ +++..+.+.. ...++.+|+.++... .+.+|++
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEE
Confidence 456699999999999999999998766 79999999 7776665532 245788999887521 1469999
Q ss_pred EEecCccccC
Q 016992 194 ISEWMGYFLL 203 (379)
Q Consensus 194 v~~~~~~~l~ 203 (379)
+..++|..+.
T Consensus 88 ~ggpPCQ~fS 97 (295)
T 2qrv_A 88 IGGSPCNDLS 97 (295)
T ss_dssp EECCCCGGGB
T ss_pred EecCCCcccc
Confidence 9987665543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0081 Score=55.79 Aligned_cols=72 Identities=25% Similarity=0.194 Sum_probs=57.4
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~ 201 (379)
.+||||-||.|++++.+-++|...|.++|+++ +++.-+.+. + -.++.+|+.++... ...+|+++..++|..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~ 73 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPPSQS 73 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCCCGGG
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecCCCCC
Confidence 37999999999999999899998889999999 877776653 2 25788999887532 257899998877665
Q ss_pred c
Q 016992 202 L 202 (379)
Q Consensus 202 l 202 (379)
+
T Consensus 74 f 74 (331)
T 3ubt_Y 74 W 74 (331)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0075 Score=57.09 Aligned_cols=98 Identities=22% Similarity=0.281 Sum_probs=63.4
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-cc----CCCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE----LPVT 188 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~----~~~~ 188 (379)
.....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|....+.....|..+ +. ...+
T Consensus 177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~~g 252 (370)
T 4ej6_A 177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLVPG 252 (370)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSSTT
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhccCC
Confidence 35678999999999875 777777887 5877999999999 8887765 3542111111111111 10 1124
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+|+|+-. .+. ...+....+.|++||.++.
T Consensus 253 g~Dvvid~-~G~--------~~~~~~~~~~l~~~G~vv~ 282 (370)
T 4ej6_A 253 GVDVVIEC-AGV--------AETVKQSTRLAKAGGTVVI 282 (370)
T ss_dssp CEEEEEEC-SCC--------HHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEEC-CCC--------HHHHHHHHHHhccCCEEEE
Confidence 79999853 211 2456667789999999883
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.064 Score=49.36 Aligned_cols=122 Identities=7% Similarity=0.058 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEcceee
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (379)
.|+..+.+.+...... ....|++||||-=.....+......+|+=||.-..+...++.+...+. +.+..++.+|+.+
T Consensus 86 ~Rt~~~d~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 86 VRTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHh-CCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 3444444555443322 225799999997665443331112589999953388888888876542 3678999999876
Q ss_pred cc---------CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 183 IE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 183 ~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
. +.....-+++++.+.+++.. .....+++.+...+.||+.++++.
T Consensus 165 -~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 165 -DWPPALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp -CHHHHHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred -hHHHHHHhccCCCCCCEEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEe
Confidence 2 12245577888877666654 467889999999889999988654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.017 Score=54.03 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=63.3
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CC
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LP 186 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~ 186 (379)
......+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+-.++. ..
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~ 232 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---DIINYKNGDIVEQILKATD 232 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---EEECGGGSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEEcCCCcCHHHHHHHHcC
Confidence 345678899999999875 777888888 5777899999998 8887765 3432 22221111110 12
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|+|+-. .+. ...+....+.|++||+++.
T Consensus 233 g~g~D~v~d~-~g~--------~~~~~~~~~~l~~~G~~v~ 264 (352)
T 3fpc_A 233 GKGVDKVVIA-GGD--------VHTFAQAVKMIKPGSDIGN 264 (352)
T ss_dssp TCCEEEEEEC-SSC--------TTHHHHHHHHEEEEEEEEE
T ss_pred CCCCCEEEEC-CCC--------hHHHHHHHHHHhcCCEEEE
Confidence 2469999842 211 1345566688999999883
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.023 Score=50.81 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc--------CCCEEEEEecHH-HH------------------------HHHHHHH---
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MA------------------------NMAKQIV--- 164 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~--------g~~~v~~vD~s~-~~------------------------~~a~~~~--- 164 (379)
.+| .|+|+|+-.|..++.++.. ...+|+++|.-+ +- +..++.+
T Consensus 69 vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 69 VPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp SCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 455 8999999999888876652 237999999322 11 1122222
Q ss_pred ---HHcCC-CCcEEEEEcceeecc------CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 165 ---EANGF-SNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 165 ---~~~~~-~~~i~~~~~d~~~~~------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
...+. .++|+++.+++.+.- .+..++|+|..+. +. + ......+..+...|+|||++++...
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~---Y-~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DL---Y-EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CC---H-HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cc---c-chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 12344 478999999997642 2345799999774 21 1 3345678888999999999996653
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0066 Score=56.65 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=56.1
Q ss_pred CEEEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---CCCceeEEEEec
Q 016992 124 KVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISEW 197 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~Iv~~~ 197 (379)
.+++|+.||.|++++.+.++|. ..|.++|+++ +++.-+.++.. ..++++|+.++.. +...+|+++..+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEecC
Confidence 3799999999999999988886 6789999999 87777766532 3467788887752 223689999887
Q ss_pred Ccccc
Q 016992 198 MGYFL 202 (379)
Q Consensus 198 ~~~~l 202 (379)
+|..+
T Consensus 78 PCQ~f 82 (333)
T 4h0n_A 78 PCQPF 82 (333)
T ss_dssp CCCCS
T ss_pred CCcch
Confidence 76654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.014 Score=54.35 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=62.6
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C--CCCc
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~ 189 (379)
.....+|.+||-.|+|. |.++..+++ .|+ +|+++|.++ .++.+++ .|.. .++..+-.++. + ..+.
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g~ 232 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIGG 232 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCCC
Confidence 34678999999999986 888888888 577 999999998 8887754 4542 12221111110 0 0136
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+|+-.. + -...+....+.|+++|.++.
T Consensus 233 ~d~vid~~-g--------~~~~~~~~~~~l~~~G~iv~ 261 (340)
T 3s2e_A 233 AHGVLVTA-V--------SPKAFSQAIGMVRRGGTIAL 261 (340)
T ss_dssp EEEEEESS-C--------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEeC-C--------CHHHHHHHHHHhccCCEEEE
Confidence 89888432 1 13456667789999999884
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.014 Score=54.71 Aligned_cols=95 Identities=28% Similarity=0.260 Sum_probs=62.2
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---eeec----c-C
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEI----E-L 185 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~----~-~ 185 (379)
.....+|.+||.+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+ ..++ . .
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~ 238 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQ 238 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHH
Confidence 34678899999999875 777788888 5777999999998 8777754 4542 222211 1111 0 0
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....+|+|+-. .+ . ...+....+.|++||+++.
T Consensus 239 ~~~g~D~vid~-~g----~----~~~~~~~~~~l~~~G~iv~ 271 (356)
T 1pl8_A 239 LGCKPEVTIEC-TG----A----EASIQAGIYATRSGGTLVL 271 (356)
T ss_dssp HTSCCSEEEEC-SC----C----HHHHHHHHHHSCTTCEEEE
T ss_pred hCCCCCEEEEC-CC----C----hHHHHHHHHHhcCCCEEEE
Confidence 01469999853 21 1 2345566788999999883
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.02 Score=53.85 Aligned_cols=97 Identities=22% Similarity=0.135 Sum_probs=62.6
Q ss_pred HHHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 113 VIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
++.......+|.+||-+|+|. |.++..+++ .|+ +|+++|.++ .++.+++ .|.. .++..+..++.
T Consensus 180 al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~ 251 (363)
T 3uog_A 180 ALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYA 251 (363)
T ss_dssp HHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHH
Confidence 333446678999999999875 777777777 577 999999998 8877755 3442 22222211111
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+-.. + . ..+....+.|+++|.++.
T Consensus 252 ~~~g~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~ 285 (363)
T 3uog_A 252 LTGDRGADHILEIA-G----G-----AGLGQSLKAVAPDGRISV 285 (363)
T ss_dssp HHTTCCEEEEEEET-T----S-----SCHHHHHHHEEEEEEEEE
T ss_pred HhCCCCceEEEECC-C----h-----HHHHHHHHHhhcCCEEEE
Confidence 1224799998542 2 1 124455678999999873
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.021 Score=53.71 Aligned_cols=97 Identities=24% Similarity=0.272 Sum_probs=63.8
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--eeecc------C
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEEIE------L 185 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~~~------~ 185 (379)
.....+|.+||-+|+|. |.++..+|+ .|+..|+++|.++ .++.+++. .. ..+.+...+ ..++. .
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHT
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHh
Confidence 35678899999999875 777888888 5886799999999 98888875 21 223322111 11110 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....+|+|+-. .+ . ...+....+.|++||+++.
T Consensus 249 ~g~g~Dvvid~-~g----~----~~~~~~~~~~l~~~G~iv~ 281 (363)
T 3m6i_A 249 GGIEPAVALEC-TG----V----ESSIAAAIWAVKFGGKVFV 281 (363)
T ss_dssp SSCCCSEEEEC-SC----C----HHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCCEEEEC-CC----C----hHHHHHHHHHhcCCCEEEE
Confidence 23579999853 21 1 2345666789999999884
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.039 Score=52.70 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=61.2
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCc
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTK 189 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~ 189 (379)
...+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+-.++. .....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 578899999999875 677777777 5877999999999 8888765 3432 22221111110 12246
Q ss_pred eeEEEEecCccccCCh-hhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+|+-. .+ .. .....++..+.+.++++|+++.
T Consensus 283 ~D~vid~-~g----~~~~~~~~~~~~l~~~~~~~G~iv~ 316 (404)
T 3ip1_A 283 AKLFLEA-TG----VPQLVWPQIEEVIWRARGINATVAI 316 (404)
T ss_dssp CSEEEEC-SS----CHHHHHHHHHHHHHHCSCCCCEEEE
T ss_pred CCEEEEC-CC----CcHHHHHHHHHHHHhccCCCcEEEE
Confidence 9999842 21 11 1233444444456699999884
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.035 Score=51.82 Aligned_cols=89 Identities=21% Similarity=0.141 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....+|.+||-+|+|. |.++..+|+ .|+ +|+++|.++ ..+.+++ .|.. .++ .+...+ . ..+|+|+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~--~-~~~D~vi 239 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK---HFY-TDPKQC--K-EELDFII 239 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGC--C-SCEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHH--h-cCCCEEE
Confidence 3678999999999875 777778888 577 999999999 8887754 4542 122 343322 2 3799998
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
-. .+. . ..+....+.|+++|+++.
T Consensus 240 d~-~g~----~----~~~~~~~~~l~~~G~iv~ 263 (348)
T 3two_A 240 ST-IPT----H----YDLKDYLKLLTYNGDLAL 263 (348)
T ss_dssp EC-CCS----C----CCHHHHHTTEEEEEEEEE
T ss_pred EC-CCc----H----HHHHHHHHHHhcCCEEEE
Confidence 53 221 1 134455689999999884
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.018 Score=54.85 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-----cc--CCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----IE--LPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~~--~~~ 187 (379)
....+|.+||-+|+|. |.++..+|+ .|+..|+++|.++ .++.+++ .|. .++...-.+ +. ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCC
Confidence 4678899999999876 788888888 5877899999999 8888764 454 222211111 10 112
Q ss_pred CceeEEEEecCcccc-------CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+|+|+-. .+.-. .+.......+....+.|++||+++.
T Consensus 253 ~g~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 253 PEVDCAVDA-VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp SCEEEEEEC-CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEEC-CCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 469999853 22110 0111223456677789999999873
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.02 Score=48.70 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=57.7
Q ss_pred HHhccCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|++||..|++ .|.....+++ .|+ +|+++|.++ ..+.+++ .|.. . ++ |..+..
T Consensus 30 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~-~~--d~~~~~~~~~~ 99 (198)
T 1pqw_A 30 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE--Y-VG--DSRSVDFADEI 99 (198)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS--E-EE--ETTCSTHHHHH
T ss_pred HHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--E-Ee--eCCcHHHHHHH
Confidence 3333467789999999953 3444455554 576 899999998 7766643 3431 1 12 221110
Q ss_pred ---CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... + ...+....+.|+|||+++.
T Consensus 100 ~~~~~~~~~D~vi~~~-g---------~~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 100 LELTDGYGVDVVLNSL-A---------GEAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp HHHTTTCCEEEEEECC-C---------THHHHHHHHTEEEEEEEEE
T ss_pred HHHhCCCCCeEEEECC-c---------hHHHHHHHHHhccCCEEEE
Confidence 1124699999542 2 1345667789999999884
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.068 Score=48.91 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchHHHHHH----HcC-CC--EEEEEecHH----------HHHHHHHHHHHcCC--CC--cEEEEEcce
Q 016992 122 KDKVVLDVGAGTGILSLFCA----KAG-AA--HVYAVECSQ----------MANMAKQIVEANGF--SN--VITVLKGKI 180 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la----~~g-~~--~v~~vD~s~----------~~~~a~~~~~~~~~--~~--~i~~~~~d~ 180 (379)
+.-+|||+|=|||...+... +.+ .. +++++|..+ ..+..+........ .. .+.+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34589999999997554332 222 22 567777521 12223333332210 12 256778888
Q ss_pred eecc--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 181 EEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 181 ~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+.- ++..+||+|+.+.+...-.-+-.-..+++.++++++|||.+.
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 6642 334579999988653322211122689999999999999998
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.026 Score=51.93 Aligned_cols=89 Identities=21% Similarity=0.168 Sum_probs=59.6
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
......+|.+||-+|+|. |.++..+|+ .|+ +|++++ ++ ..+.+++ .|. -.++. |...+ ...+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa---~~v~~-d~~~v---~~g~Dv 202 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGV---RHLYR-EPSQV---TQKYFA 202 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTE---EEEES-SGGGC---CSCEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCC---CEEEc-CHHHh---CCCccE
Confidence 456678999999999964 777888888 587 999999 88 8888765 343 12232 43333 478999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+-. .+. . .+....+.|+++|+++.
T Consensus 203 v~d~-~g~-----~----~~~~~~~~l~~~G~~v~ 227 (315)
T 3goh_A 203 IFDA-VNS-----Q----NAAALVPSLKANGHIIC 227 (315)
T ss_dssp EECC-----------------TTGGGEEEEEEEEE
T ss_pred EEEC-CCc-----h----hHHHHHHHhcCCCEEEE
Confidence 9832 211 1 12445689999999874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0034 Score=73.27 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cC-----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AG-----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDI 192 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g-----~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 192 (379)
.+..+||+||.|+|..+..+.+ .+ ..+++..|+|+ ..+.|+++++... +..-..|..+. .+....||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeE
Confidence 3567999999999977655544 22 24789999999 8888888776531 33322233221 112367999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
||+..+ ++....+...+.+++++|||||.++..
T Consensus 1315 via~~v---l~~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1315 LVCNCA---LATLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp EEEECC-----------------------CCEEEEE
T ss_pred EEEccc---ccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 997643 444467788899999999999998754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0029 Score=58.89 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
..+|..|||.-||+|..+..+.+.|. +.+|+|+++ .++.+++++...+.. ...++.|+.++.
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~ 312 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRIL 312 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Confidence 36889999999999999999888875 999999999 999999988766542 444555555543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.038 Score=52.23 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--eeec-----
Q 016992 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEEI----- 183 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~~----- 183 (379)
+.......+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++... -.++
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHH
Confidence 33445678899999999974 777778887 5887999999999 8887764 4542 122211 1111
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (379)
....+.+|+|+-. .+ . ...+....+.|++| |+++.
T Consensus 258 ~~~~gg~D~vid~-~g-------~-~~~~~~~~~~l~~g~G~iv~ 293 (378)
T 3uko_A 258 DLTDGGVDYSFEC-IG-------N-VSVMRAALECCHKGWGTSVI 293 (378)
T ss_dssp HHTTSCBSEEEEC-SC-------C-HHHHHHHHHTBCTTTCEEEE
T ss_pred HhcCCCCCEEEEC-CC-------C-HHHHHHHHHHhhccCCEEEE
Confidence 0112479999843 21 1 24566677899996 98873
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.022 Score=55.67 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---------------
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 186 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------------- 186 (379)
..+++|+-||.|++++.+.++|...|.++|+++ +++.-+.++... ....++++|+.++...
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhh
Confidence 358999999999999999888887899999999 777666654211 1235677888776421
Q ss_pred --CCceeEEEEecCccccC
Q 016992 187 --VTKVDIIISEWMGYFLL 203 (379)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~ 203 (379)
...+|+|+..++|..+.
T Consensus 165 ~~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 165 QHIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HHSCCCSEEEEECCCCCC-
T ss_pred hcCCCCCEEEecCCCcchh
Confidence 14689999988776554
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.024 Score=53.48 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=62.7
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce--eecc-----C
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 185 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~ 185 (379)
......+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+- .++. .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 345678899999999875 677777777 5877999999998 8877754 4542 1222110 1110 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (379)
..+.+|+|+-. .+. ...+....+.|+++ |+++.
T Consensus 258 t~gg~Dvvid~-~g~--------~~~~~~~~~~l~~~~G~iv~ 291 (373)
T 1p0f_A 258 TNGGVDYAVEC-AGR--------IETMMNALQSTYCGSGVTVV 291 (373)
T ss_dssp TTSCBSEEEEC-SCC--------HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEEC-CCC--------HHHHHHHHHHHhcCCCEEEE
Confidence 12479999843 211 23456677899999 99873
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.027 Score=53.14 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=62.3
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce--eecc-----C
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 185 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~ 185 (379)
......+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++...- .++. .
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHH
Confidence 345678899999999875 677777777 5777999999998 8887754 4542 1221110 1110 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (379)
..+.+|+|+-. .+. ...+....+.|+++ |+++.
T Consensus 259 ~~~g~D~vid~-~g~--------~~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 259 TNGGVDFSLEC-VGN--------VGVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp HTSCBSEEEEC-SCC--------HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEEC-CCC--------HHHHHHHHHHhhcCCcEEEE
Confidence 12479999853 211 23466677899999 99874
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.092 Score=49.42 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=62.3
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce--eecc-----C
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 185 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~ 185 (379)
......+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++...- .++. .
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEeccccccccHHHHHHHH
Confidence 345678899999999875 677777777 5877999999998 8887764 3442 1221110 1110 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (379)
..+.+|+|+-. .+. ...+....+.|+++ |+++.
T Consensus 257 ~~~g~D~vid~-~g~--------~~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 257 TDGGVDYSFEC-IGN--------VKVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp TTSCBSEEEEC-SCC--------HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEEC-CCc--------HHHHHHHHHhhccCCcEEEE
Confidence 12479999843 211 23456677899999 99873
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.031 Score=52.86 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=62.2
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce--eecc-----C
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 185 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~ 185 (379)
......+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+- .++. .
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITEL 261 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHH
Confidence 345678899999999874 677777777 5777999999998 8777754 4542 1221110 1110 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (379)
..+.+|+|+-. .+. ...+....+.|+++ |+++.
T Consensus 262 ~~~g~Dvvid~-~G~--------~~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 262 TAGGVDYSLDC-AGT--------AQTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp HTSCBSEEEES-SCC--------HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCccEEEEC-CCC--------HHHHHHHHHHhhcCCCEEEE
Confidence 12479999842 211 24566677899999 99874
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.036 Score=52.35 Aligned_cols=92 Identities=25% Similarity=0.224 Sum_probs=59.6
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~ 192 (379)
....+|.+||.+|+|. |.++..+|+ .|+ +|+++|.++ .++.+++ .|.. .++...-.+ . ... ..+|+
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~-~g~Dv 260 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHL-KSFDF 260 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTT-TCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHhh-cCCCE
Confidence 3577899999999975 777777887 576 799999998 8887765 3432 222211111 1 112 57999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+-. .+. . ..+....+.|+++|.++.
T Consensus 261 vid~-~g~----~----~~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 261 ILNT-VAA----P----HNLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp EEEC-CSS----C----CCHHHHHTTEEEEEEEEE
T ss_pred EEEC-CCC----H----HHHHHHHHHhccCCEEEE
Confidence 9853 221 1 123455688999999873
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.04 Score=51.36 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--eee-cc--CCCCce
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEE-IE--LPVTKV 190 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~-~~--~~~~~~ 190 (379)
...+|.+||-+|+|. |.++..+|+ .|..+|+++|.++ .++.+++ .|... ++..+ ..+ +. .....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA---AVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE---EEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE---EEcCCCcHHHHHHHHhCCCCC
Confidence 568899999999975 777888887 5667999999999 8887764 45421 22211 100 00 112379
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+-. .+ . ...+....+.|+++|+++.
T Consensus 241 d~v~d~-~G----~----~~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 241 TAVFDF-VG----A----QSTIDTAQQVVAVDGHISV 268 (345)
T ss_dssp EEEEES-SC----C----HHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEC-CC----C----HHHHHHHHHHHhcCCEEEE
Confidence 999843 21 1 2356667789999999884
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.095 Score=48.65 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=60.7
Q ss_pred HHhccCCCCCCEEEEEcCCC--chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~--G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|.+||-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++ .|.. .++...-.++.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lga~---~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR----LGAA---YVIDTSTAPLYETVME 207 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----CCCc---EEEeCCcccHHHHHHH
Confidence 33446678999999999974 677777777 577 999999998 8888765 3432 12221111110
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... +. . .. ....+.|+++|.++.
T Consensus 208 ~~~~~g~Dvvid~~-g~-----~---~~-~~~~~~l~~~G~iv~ 241 (340)
T 3gms_A 208 LTNGIGADAAIDSI-GG-----P---DG-NELAFSLRPNGHFLT 241 (340)
T ss_dssp HTTTSCEEEEEESS-CH-----H---HH-HHHHHTEEEEEEEEE
T ss_pred HhCCCCCcEEEECC-CC-----h---hH-HHHHHHhcCCCEEEE
Confidence 1224799998532 11 1 12 223378999999884
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.041 Score=51.77 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=59.5
Q ss_pred CCCEEEEEc-CCC-chHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cee-ec-cCCCCceeEE
Q 016992 122 KDKVVLDVG-AGT-GILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIE-EI-ELPVTKVDII 193 (379)
Q Consensus 122 ~~~~VLDlG-cG~-G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~-~~-~~~~~~~D~I 193 (379)
+|.+||-+| +|. |.++..+|+. +..+|+++|.++ .++.+++ .|.. .++.. +.. .+ ....+.+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHhcCCCceEE
Confidence 788999998 554 7888888885 666999999998 8887764 4542 12211 110 01 1123579988
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+-. .+ -...+....+.|+++|+++.
T Consensus 244 id~-~g--------~~~~~~~~~~~l~~~G~iv~ 268 (363)
T 4dvj_A 244 FST-TH--------TDKHAAEIADLIAPQGRFCL 268 (363)
T ss_dssp EEC-SC--------HHHHHHHHHHHSCTTCEEEE
T ss_pred EEC-CC--------chhhHHHHHHHhcCCCEEEE
Confidence 842 11 12456677789999999884
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.048 Score=50.96 Aligned_cols=94 Identities=23% Similarity=0.215 Sum_probs=60.2
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc----ee-ecc--CC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK----IE-EIE--LP 186 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d----~~-~~~--~~ 186 (379)
.....+|.+||-+|+|. |.++..+++ .|+ +|+++|.++ .++.+++ .|.. .++..+ .. .+. ..
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~ 234 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIR 234 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhc
Confidence 34578899999999875 677777777 576 599999998 8777753 4542 122211 10 110 00
Q ss_pred ---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 ---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|+|+-.. + . ...+....+.|+++|+++.
T Consensus 235 ~~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 269 (352)
T 1e3j_A 235 SAIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLML 269 (352)
T ss_dssp HHSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEE
T ss_pred cccCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 24699998532 1 1 2345666788999999883
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.77 E-value=0.097 Score=49.31 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=61.9
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce--eecc-----C
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 185 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~ 185 (379)
......+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+- .++. .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHH
Confidence 345678899999999875 677777777 5777899999998 8877753 4542 1221110 1110 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (379)
..+.+|+|+-. .+. ...+....+.|+++ |+++.
T Consensus 258 ~~~g~D~vid~-~g~--------~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 258 SNGGVDFSFEV-IGR--------LDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp TTSCBSEEEEC-SCC--------HHHHHHHHHHBCTTTCEEEE
T ss_pred hCCCCcEEEEC-CCC--------HHHHHHHHHHhhcCCcEEEE
Confidence 12479999843 211 23456667889999 99873
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.038 Score=51.16 Aligned_cols=97 Identities=20% Similarity=0.115 Sum_probs=59.1
Q ss_pred HHhccCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|++||..|++ .|..+..+++ .|+ +|+++|.++ .++.+++ .|.. ..+-..+..++.
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTVNSLEEALKK 209 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEEETTSCSCHHHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc--EEEecCCHHHHHHHHHH
Confidence 3344567889999999983 4555555555 576 999999988 7776633 3431 112111101110
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+.+|+++... + . ..+....+.|++||+++.
T Consensus 210 ~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 210 ASPDGYDCYFDNV-G-------G--EFLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp HCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEE
T ss_pred HhCCCCeEEEECC-C-------h--HHHHHHHHHHhcCCEEEE
Confidence 1124799998642 1 1 235667789999999874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.081 Score=49.00 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=61.8
Q ss_pred HHHhccCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----
Q 016992 113 VIYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (379)
++.......+|++||-.|++ .|..+..+++ .|+ +|++++.++ .++.+.+ ..|.. .++...-.++.
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVE---ELGFD---GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TTCCS---EEEETTTSCHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCC---EEEECCCHHHHHHHH
Confidence 34344667899999999983 4667777776 577 999999988 7776622 23432 12211111110
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+.+|+|+... + . ..+....+.|+++|+++.
T Consensus 213 ~~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 213 RECPKGIDVFFDNV-G-------G--EILDTVLTRIAFKARIVL 246 (336)
T ss_dssp HHCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEE
T ss_pred HhcCCCceEEEECC-C-------c--chHHHHHHHHhhCCEEEE
Confidence 1125799998532 1 1 356677789999999883
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.029 Score=51.31 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=42.4
Q ss_pred CcEEEEEcceeec-c-CCCCceeEEEEecCccccCC---------------h---hhHHHHHHHHHhcccCCEEEEecCC
Q 016992 171 NVITVLKGKIEEI-E-LPVTKVDIIISEWMGYFLLF---------------E---NMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 171 ~~i~~~~~d~~~~-~-~~~~~~D~Iv~~~~~~~l~~---------------~---~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
.+++++++|+.+. . +++++||+|+++++ |.... + ..+..++.++.++|||||.++....
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPP-Y~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPP-YWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCC-CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCC-CCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 4578999999884 2 45689999999975 43211 0 1234677889999999999876544
Q ss_pred c
Q 016992 231 S 231 (379)
Q Consensus 231 ~ 231 (379)
.
T Consensus 99 d 99 (297)
T 2zig_A 99 D 99 (297)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.059 Score=50.09 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=61.4
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCce
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (379)
.....+|.+||-.|+|. |.++..+++ .|+..++++|.++ .++.+++ .|....+.....|..+.. .....+
T Consensus 155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~~~g~ 230 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRELRFN 230 (346)
T ss_dssp HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGGGCSS
T ss_pred HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcccCCc
Confidence 35568899999999975 566777777 6888899999999 8887764 454221111111111110 112457
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+.. .+ ....+....++|++||.++.
T Consensus 231 d~v~d~-~G--------~~~~~~~~~~~l~~~G~~v~ 258 (346)
T 4a2c_A 231 QLILET-AG--------VPQTVELAVEIAGPHAQLAL 258 (346)
T ss_dssp EEEEEC-SC--------SHHHHHHHHHHCCTTCEEEE
T ss_pred cccccc-cc--------ccchhhhhhheecCCeEEEE
Confidence 887742 21 13455666788999999873
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.1 Score=48.07 Aligned_cols=96 Identities=21% Similarity=0.194 Sum_probs=60.9
Q ss_pred HHhccCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|++||-.|+ | .|..+..+++ .|+ +|++++.++ .++.+++ .|.. .++..+-.++.
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLE 203 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHH
Confidence 334456788999999993 3 4677777777 577 999999998 8887764 3432 12221111110
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... +. ..+....+.|+++|+++.
T Consensus 204 ~~~~~g~Dvvid~~-g~---------~~~~~~~~~l~~~G~iv~ 237 (325)
T 3jyn_A 204 LTDGKKCPVVYDGV-GQ---------DTWLTSLDSVAPRGLVVS 237 (325)
T ss_dssp HTTTCCEEEEEESS-CG---------GGHHHHHTTEEEEEEEEE
T ss_pred HhCCCCceEEEECC-Ch---------HHHHHHHHHhcCCCEEEE
Confidence 1224799998532 21 234556689999999884
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.1 Score=49.28 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=60.5
Q ss_pred cC-CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---eeec----c--
Q 016992 118 KF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEI----E-- 184 (379)
Q Consensus 118 ~~-~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~----~-- 184 (379)
.. ..+|.+||-+|+|. |.++..+|+ .|+.+|++++.++ .++.+++ .|.. .++..+ -.++ .
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH
Confidence 45 77899999999764 677777777 5756999999998 8777763 4542 223221 1111 0
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+-. .+. ...+....+.|+++|+++.
T Consensus 263 ~~g~g~Dvvid~-~g~--------~~~~~~~~~~l~~~G~iv~ 296 (380)
T 1vj0_A 263 THGRGADFILEA-TGD--------SRALLEGSELLRRGGFYSV 296 (380)
T ss_dssp TTTSCEEEEEEC-SSC--------TTHHHHHHHHEEEEEEEEE
T ss_pred hCCCCCcEEEEC-CCC--------HHHHHHHHHHHhcCCEEEE
Confidence 122369999853 211 1234556688999999873
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.12 Score=48.02 Aligned_cols=94 Identities=28% Similarity=0.260 Sum_probs=60.0
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (379)
.... +|.+||-+|+|. |.++..+++ .|+.+|+++|.++ .++.+++ .|. + .++..+-.++. ...
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga-~--~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGA-D--YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTC-S--EEECTTTSCHHHHHHHHTTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC-C--EEECCCCcCHHHHHHHHcCC
Confidence 3456 899999999964 666777777 5766899999998 8777764 343 1 12221111110 112
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+|+|+... + . ...+....+.|+++|+++.
T Consensus 235 ~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 265 (348)
T 2d8a_A 235 NGVDVFLEFS-G----A----PKALEQGLQAVTPAGRVSL 265 (348)
T ss_dssp SCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 4699998532 1 1 2345666788999999873
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.1 Score=48.33 Aligned_cols=95 Identities=22% Similarity=0.216 Sum_probs=60.0
Q ss_pred HhccCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------
Q 016992 115 YQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------ 184 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------ 184 (379)
.......+|++||-+|++ .|..+..+++ .|+ +|++++.++ .++.+++ .|.. .++..+-.++.
T Consensus 141 ~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 141 NEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKF 212 (334)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHH
Confidence 333467899999999942 3666777777 576 999999988 8777654 3432 12221111110
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... +. ..+....+.|++||.++.
T Consensus 213 ~~~~g~D~vid~~-g~---------~~~~~~~~~l~~~G~iv~ 245 (334)
T 3qwb_A 213 TNGKGVDASFDSV-GK---------DTFEISLAALKRKGVFVS 245 (334)
T ss_dssp TTTSCEEEEEECC-GG---------GGHHHHHHHEEEEEEEEE
T ss_pred hCCCCceEEEECC-Ch---------HHHHHHHHHhccCCEEEE
Confidence 1135799998532 21 234556678999999884
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.032 Score=52.01 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-c--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc----c-eeeccCCCC
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-A--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG----K-IEEIELPVT 188 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~----d-~~~~~~~~~ 188 (379)
.. +|.+||-+|+|. |.++..+|+ . |+ +|+++|.++ .++.+++ .|. + .++.. + ...+. ...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa-~--~vi~~~~~~~~~~~~~-~g~ 237 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGA-D--YVSEMKDAESLINKLT-DGL 237 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTC-S--EEECHHHHHHHHHHHH-TTC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCC-C--EEeccccchHHHHHhh-cCC
Confidence 56 899999999975 677777887 5 76 899999998 8887765 343 2 12211 1 11111 123
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+|+|+-.. + . ...+....+.|+++|.++.
T Consensus 238 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 267 (344)
T 2h6e_A 238 GASIAIDLV-G----T----EETTYNLGKLLAQEGAIIL 267 (344)
T ss_dssp CEEEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEECC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 799998532 1 1 2345666788999999873
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.15 Score=47.34 Aligned_cols=98 Identities=21% Similarity=0.050 Sum_probs=60.1
Q ss_pred cCCCCCCEEEEEcCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-cc--CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G-~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (379)
....+|.+||-+|+|.+ .++..+++ .+..+|+++|.++ .++.+++ .|....+.....|..+ +. .....+|
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence 45688999999999874 55555555 5677999999998 7776654 4442212222222111 00 1224577
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++.... -...+....+.|+++|.++..
T Consensus 235 ~~~~~~~---------~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 235 SAIVCAV---------ARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEECCS---------CHHHHHHHHHTEEEEEEEEEC
T ss_pred EEEEecc---------CcchhheeheeecCCceEEEE
Confidence 7774321 134556667899999998743
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.25 E-value=0.028 Score=51.33 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eeccCCCCceeEEE
Q 016992 120 LFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv 194 (379)
..+|.+||-+|+ |.|..+..+++ .|+ +|++++.++ .++.+++ .|.. .++..+- .++...-..+|+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~d~vi 194 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAWGGLDLVL 194 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHTTSEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHhcCceEEE
Confidence 788999999998 34677777777 576 999999988 7777654 4432 1222111 11110015699998
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. . +. ..+....+.|+++|+++.
T Consensus 195 d-~-g~---------~~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 195 E-V-RG---------KEVEESLGLLAHGGRLVY 216 (302)
T ss_dssp E-C-SC---------TTHHHHHTTEEEEEEEEE
T ss_pred E-C-CH---------HHHHHHHHhhccCCEEEE
Confidence 5 3 21 134566689999999873
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=48.37 Aligned_cols=96 Identities=26% Similarity=0.266 Sum_probs=62.0
Q ss_pred HHHhccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----
Q 016992 113 VIYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (379)
++.......+|.+||-.|+ |.|..+..+++ .|+ +|++++.++ .++.+++ .|.. .++..+ .++.
T Consensus 150 ~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~v~~~~-~~~~~~v~ 220 (342)
T 4eye_A 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS----VGAD---IVLPLE-EGWAKAVR 220 (342)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEESS-TTHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEecCc-hhHHHHHH
Confidence 3434456788999999997 34677777777 577 999999988 8777765 3432 222222 2111
Q ss_pred --CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... +. ..+....+.|+++|.++.
T Consensus 221 ~~~~~~g~Dvvid~~-g~---------~~~~~~~~~l~~~G~iv~ 255 (342)
T 4eye_A 221 EATGGAGVDMVVDPI-GG---------PAFDDAVRTLASEGRLLV 255 (342)
T ss_dssp HHTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCceEEEECC-ch---------hHHHHHHHhhcCCCEEEE
Confidence 1224799998532 21 135566689999999884
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.073 Score=54.59 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHc----------C---CCEEEEEecHH-HHHHHHH--------------HHHHc-----C
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA----------G---AAHVYAVECSQ-MANMAKQ--------------IVEAN-----G 168 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~----------g---~~~v~~vD~s~-~~~~a~~--------------~~~~~-----~ 168 (379)
+.-+|+|+|-|+|...+.+.+. . .-+++++|..+ ..+.+++ .+... |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 4469999999999776665442 1 14799999855 4443333 22221 1
Q ss_pred -----CC---CcEEEEEcceeecc--CC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 169 -----FS---NVITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 169 -----~~---~~i~~~~~d~~~~~--~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+. -.++++.+|+.+.- +. ...+|.++.+.+......+-....++..+.++++|||.+....
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 11 14677888886542 21 3689999987643222111123678899999999999987543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.12 Score=47.96 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=58.9
Q ss_pred cCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----c--CCC
Q 016992 118 KFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--LPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~~ 187 (379)
....++.+||..|+ |.|..+..+++ .|+ +|++++.++ .++.+++ .|. + .++...-.++ . ...
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga-~--~~~d~~~~~~~~~~~~~~~~ 233 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGA-D--ETVNYTHPDWPKEVRRLTGG 233 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTC-S--EEEETTSTTHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC-C--EEEcCCcccHHHHHHHHhCC
Confidence 45678999999998 45777777777 576 999999988 8877754 343 2 1222111111 0 112
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+|+|+... + . ..+....+.|+++|+++.
T Consensus 234 ~~~d~vi~~~-g----~-----~~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 234 KGADKVVDHT-G----A-----LYFEGVIKATANGGRIAI 263 (343)
T ss_dssp TCEEEEEESS-C----S-----SSHHHHHHHEEEEEEEEE
T ss_pred CCceEEEECC-C----H-----HHHHHHHHhhccCCEEEE
Confidence 4799998542 2 1 134555678999999873
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.066 Score=50.28 Aligned_cols=93 Identities=24% Similarity=0.217 Sum_probs=60.2
Q ss_pred ccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCC
Q 016992 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPV 187 (379)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 187 (379)
.....+|.+||-.|+ |.|..+..+++ .|+ +|++++.++ .++.+++ .|.. .++..+-.++. ...
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCT
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcC
Confidence 345678999999993 45777888887 577 899999998 7777764 4442 12221111110 112
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+|+|+... + . ..+....+.|+++|.++.
T Consensus 230 ~g~D~vid~~-g------~---~~~~~~~~~l~~~G~iv~ 259 (362)
T 2c0c_A 230 EGVDVVYESV-G------G---AMFDLAVDALATKGRLIV 259 (362)
T ss_dssp TCEEEEEECS-C------T---HHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECC-C------H---HHHHHHHHHHhcCCEEEE
Confidence 4699998532 2 1 345666788999999873
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.072 Score=49.65 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=56.8
Q ss_pred CCCEEEEEc-CCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--eee-c-cCCCCceeEE
Q 016992 122 KDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEE-I-ELPVTKVDII 193 (379)
Q Consensus 122 ~~~~VLDlG-cG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~~~~D~I 193 (379)
+|.+||-+| +|. |.++..+++ .|+ +|++++.++ .++.+++ .|.. .++..+ ..+ + ......+|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD---IVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS---EEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEEECCccHHHHHHHhCCCCccEE
Confidence 899999994 443 677777777 577 999999988 8888775 3432 122111 100 0 0123579999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.. .+ -...+....+.|+++|.++.
T Consensus 222 ~d~-~g--------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 222 FCT-FN--------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EES-SC--------HHHHHHHHHHHEEEEEEEEE
T ss_pred EEC-CC--------chHHHHHHHHHhccCCEEEE
Confidence 852 11 13455667788999999873
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.13 Score=47.72 Aligned_cols=98 Identities=18% Similarity=0.078 Sum_probs=60.5
Q ss_pred HHhccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|++||..|+ |.|..+..+++ .|+ +|++++.++ .++.+++ ..|.. ..+-..+..++.
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~~--~~~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGFD--DAFNYKEESDLTAALKR 220 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCCS--EEEETTSCSCSHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCc--eEEecCCHHHHHHHHHH
Confidence 334456788999999997 34666666666 576 999999988 7777653 23432 111111111110
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... +. ..+....+.|++||+++.
T Consensus 221 ~~~~~~d~vi~~~--------g~--~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 221 CFPNGIDIYFENV--------GG--KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp HCTTCEEEEEESS--------CH--HHHHHHHTTEEEEEEEEE
T ss_pred HhCCCCcEEEECC--------CH--HHHHHHHHHHhcCCEEEE
Confidence 1124699998542 11 256677789999999873
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.18 Score=46.38 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=57.7
Q ss_pred ccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----c--CC
Q 016992 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--LP 186 (379)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~ 186 (379)
.....++++||-.|+ |.|..+..+++ .|+ +|+++|.++ .++.+++ .|.. . ++..+-.+. . ..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~-~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW--Q-VINYREEDLVERLKEITG 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS--E-EEETTTSCHHHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--E-EEECCCccHHHHHHHHhC
Confidence 456778999999994 34555555555 576 999999998 8777765 2431 1 221111111 0 11
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|+|+... + ...+....+.|+++|+++.
T Consensus 207 ~~~~D~vi~~~-g---------~~~~~~~~~~l~~~G~iv~ 237 (327)
T 1qor_A 207 GKKVRVVYDSV-G---------RDTWERSLDCLQRRGLMVS 237 (327)
T ss_dssp TCCEEEEEECS-C---------GGGHHHHHHTEEEEEEEEE
T ss_pred CCCceEEEECC-c---------hHHHHHHHHHhcCCCEEEE
Confidence 24699998642 2 1235566688999999873
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.013 Score=54.81 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=58.7
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (379)
.... +|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++. . + .++..+-.++. ....
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhcCC
Confidence 4456 899999999864 667777777 5766899999998 77776542 1 2 11211111110 0024
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+|+|+... + . ...+....+.|+++|+++.
T Consensus 231 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 260 (343)
T 2dq4_A 231 GVEVLLEFS-G----N----EAAIHQGLMALIPGGEARI 260 (343)
T ss_dssp CEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 699998532 1 1 2345666788999999873
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.12 Score=48.53 Aligned_cols=94 Identities=19% Similarity=0.144 Sum_probs=59.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-ec--cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI--ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~~D 191 (379)
....+|.+||-+|+|. |.++..+|+ .|+ +|+++|.++ .++.+++ .|. + .++..+-. ++ .+. +.+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa-~--~v~~~~~~~~~~~~~~-~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGA-D--HYIATLEEGDWGEKYF-DTFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTC-S--EEEEGGGTSCHHHHSC-SCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCC-C--EEEcCcCchHHHHHhh-cCCC
Confidence 4677899999999864 677777777 577 799999998 8887765 343 2 22221111 11 112 5799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+... +.. . ...+....+.|++||+++.
T Consensus 246 ~vid~~-g~~--~----~~~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 246 LIVVCA-SSL--T----DIDFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp EEEECC-SCS--T----TCCTTTGGGGEEEEEEEEE
T ss_pred EEEECC-CCC--c----HHHHHHHHHHhcCCCEEEE
Confidence 998532 210 0 0123344578999999873
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.26 Score=47.81 Aligned_cols=95 Identities=21% Similarity=0.167 Sum_probs=59.6
Q ss_pred cCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-------------
Q 016992 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI------------- 180 (379)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~------------- 180 (379)
....+|.+||-+|+ | .|.++..+|+ .|+ +|++++.++ .++.+++ .|....+.....|.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~ 298 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE 298 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence 45688999999997 4 4777888888 566 888998888 8887754 34421111111111
Q ss_pred -----eecc--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 181 -----EEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 181 -----~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+. .....+|+|+-. .+ . ..+....++|++||.++.
T Consensus 299 ~~~~~~~i~~~t~g~g~Dvvid~-~G-------~--~~~~~~~~~l~~~G~iv~ 342 (456)
T 3krt_A 299 WKRFGKRIRELTGGEDIDIVFEH-PG-------R--ETFGASVFVTRKGGTITT 342 (456)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEEC-SC-------H--HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCcEEEEc-CC-------c--hhHHHHHHHhhCCcEEEE
Confidence 0000 112579998843 21 1 345666789999999884
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.083 Score=48.90 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=43.8
Q ss_pred CcEEEEEcceeec-c-CCCCceeEEEEecCccccCC------------hhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 171 NVITVLKGKIEEI-E-LPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 171 ~~i~~~~~d~~~~-~-~~~~~~D~Iv~~~~~~~l~~------------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
....++++|+.+. . +++++||+|+++++ |.... ...+...+.++.++|+|||.++....
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPP-Y~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCC-CCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 4578999998763 3 55689999999975 54331 12567888899999999999885433
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.094 Score=48.71 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCCce
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (379)
...+|.+||-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++ .|.. .++...-.++. .. ..+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHH-SSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHHh-CCC
Confidence 567899999999964 677777777 576 999999998 8777753 4542 12211101110 01 469
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+... + . ...+....+.|+++|+++.
T Consensus 232 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 232 HAAVVTA-V----S----KPAFQSAYNSIRRGGACVL 259 (339)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 9998532 1 1 2345666788999999873
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.38 Score=44.08 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=58.2
Q ss_pred hccCCCCCCEEEEEc-CCC-chHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceee-ccCCCCcee
Q 016992 116 QNKFLFKDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVD 191 (379)
Q Consensus 116 ~~~~~~~~~~VLDlG-cG~-G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D 191 (379)
......+|.+||-+| +|. |.++..+++ .|+ +|++++.++..+.++ +.|... ++..+-.+ +......+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~----~lGa~~---~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLK----ALGAEQ---CINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHH----HHTCSE---EEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHH----HcCCCE---EEeCCCcchhhhhccCCC
Confidence 446678999999997 553 788888888 577 899987443545544 355531 22222111 111125699
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+-. .+ . .. +....+.|+++|+++.
T Consensus 218 ~v~d~-~g-------~-~~-~~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 218 AVIDL-VG-------G-DV-GIQSIDCLKETGCIVS 243 (321)
T ss_dssp EEEES-SC-------H-HH-HHHHGGGEEEEEEEEE
T ss_pred EEEEC-CC-------c-HH-HHHHHHhccCCCEEEE
Confidence 98842 21 1 12 2667799999999883
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.11 Score=48.24 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=58.8
Q ss_pred cCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-cceeecc-----CCC
Q 016992 118 KFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEIE-----LPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~-----~~~ 187 (379)
....+|++||.+|++ .|..+..+++ .|+ +|+++|.++ .++.+++ .|.. . ++. .+..++. ...
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~--~-~~d~~~~~~~~~~~~~~~~ 236 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE--V-FIDFTKEKDIVGAVLKATD 236 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC--E-EEETTTCSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc--e-EEecCccHhHHHHHHHHhC
Confidence 356789999999983 4666666666 576 999999988 7776654 3432 1 221 1111110 001
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+|+|+... + ....+....+.|+++|+++.
T Consensus 237 ~~~D~vi~~~-g--------~~~~~~~~~~~l~~~G~iv~ 267 (347)
T 2hcy_A 237 GGAHGVINVS-V--------SEAAIEASTRYVRANGTTVL 267 (347)
T ss_dssp SCEEEEEECS-S--------CHHHHHHHTTSEEEEEEEEE
T ss_pred CCCCEEEECC-C--------cHHHHHHHHHHHhcCCEEEE
Confidence 2699998642 1 12456777899999999873
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.27 Score=45.87 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=59.0
Q ss_pred HHhccCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|++||-.|++ .|..+..+++ .|+ +|++++.++ .++.+++ .|.. .++..+-.++.
T Consensus 162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKK 233 (351)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHH
T ss_pred HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHH
Confidence 3334567889999999973 3566666666 576 899999988 7776543 3432 12211111110
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... + . ..+....+.|+++|+++.
T Consensus 234 ~~~~~~~D~vi~~~-G-------~--~~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 234 YVGEKGIDIIIEML-A-------N--VNLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp HHCTTCEEEEEESC-H-------H--HHHHHHHHHEEEEEEEEE
T ss_pred HcCCCCcEEEEECC-C-------h--HHHHHHHHhccCCCEEEE
Confidence 1124799998532 1 1 234566789999999874
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.098 Score=48.39 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=59.8
Q ss_pred HHhccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......++++||-.|+ |.|..+..+++ .|+ +|+++|.++ .++.+++ .|. + . ++..+-.+..
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~g~-~-~-~~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 137 LHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK----LGC-H-H-TINYSTQDFAEVVRE 208 (333)
T ss_dssp HHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTC-S-E-EEETTTSCHHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC-C-E-EEECCCHHHHHHHHH
Confidence 333456778999999995 45666666666 576 999999998 8877754 243 2 1 1211111110
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... +. ..+....+.|+++|.++.
T Consensus 209 ~~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~ 242 (333)
T 1wly_A 209 ITGGKGVDVVYDSI-GK---------DTLQKSLDCLRPRGMCAA 242 (333)
T ss_dssp HHTTCCEEEEEECS-CT---------TTHHHHHHTEEEEEEEEE
T ss_pred HhCCCCCeEEEECC-cH---------HHHHHHHHhhccCCEEEE
Confidence 1124699998542 21 234566688999999873
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.084 Score=49.39 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=58.8
Q ss_pred hccCCCCC--CEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 116 QNKFLFKD--KVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 116 ~~~~~~~~--~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
......+| ++||-.|++ .|..+..+++ .|+.+|++++.++ .++.+++. .|.. . ++..+-.++.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~-~~d~~~~~~~~~~~~ 225 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD--A-AINYKKDNVAEQLRE 225 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS--E-EEETTTSCHHHHHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc--e-EEecCchHHHHHHHH
Confidence 33566788 999999983 3555555666 5766999999988 76666532 3432 1 1211111110
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+.+|+++... + ...+....+.|+++|+++.
T Consensus 226 ~~~~~~d~vi~~~-G---------~~~~~~~~~~l~~~G~iv~ 258 (357)
T 2zb4_A 226 SCPAGVDVYFDNV-G---------GNISDTVISQMNENSHIIL 258 (357)
T ss_dssp HCTTCEEEEEESC-C---------HHHHHHHHHTEEEEEEEEE
T ss_pred hcCCCCCEEEECC-C---------HHHHHHHHHHhccCcEEEE
Confidence 1113699998542 1 1456667789999999873
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.12 Score=47.54 Aligned_cols=87 Identities=22% Similarity=0.171 Sum_probs=56.3
Q ss_pred CCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeEEEEec
Q 016992 123 DKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (379)
Q Consensus 123 ~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~ 197 (379)
+. ||-.|+ | .|.++..+|+ .|+ +|++++.++ ..+.+++ .|... .+-..+.... .+....+|+|+-.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~d~v~d~- 218 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGANR--ILSRDEFAESRPLEKQLWAGAIDT- 218 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCSE--EEEGGGSSCCCSSCCCCEEEEEES-
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCE--EEecCCHHHHHhhcCCCccEEEEC-
Confidence 45 999997 3 4788888888 577 999999998 8888865 34321 1111111111 1223579988742
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+ . ..+....+.|+++|+++.
T Consensus 219 ~g-------~--~~~~~~~~~l~~~G~iv~ 239 (324)
T 3nx4_A 219 VG-------D--KVLAKVLAQMNYGGCVAA 239 (324)
T ss_dssp SC-------H--HHHHHHHHTEEEEEEEEE
T ss_pred CC-------c--HHHHHHHHHHhcCCEEEE
Confidence 21 1 256777789999999884
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.29 Score=51.96 Aligned_cols=75 Identities=23% Similarity=0.138 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---------------cC
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---------------EL 185 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---------------~~ 185 (379)
..+++||-||.|++++.+.++|. ..|.|+|+++ +++.-+.|.. ...++.+|+.++ .+
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhhhc
Confidence 34899999999999999999987 6788999999 7776665532 245666665432 01
Q ss_pred C-CCceeEEEEecCccccC
Q 016992 186 P-VTKVDIIISEWMGYFLL 203 (379)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~ 203 (379)
+ .+.+|+|+..+++..+.
T Consensus 614 p~~~~vDll~GGpPCQ~FS 632 (1002)
T 3swr_A 614 PQKGDVEMLCGGPPCQGFS 632 (1002)
T ss_dssp CCTTTCSEEEECCCCTTCC
T ss_pred ccCCCeeEEEEcCCCcchh
Confidence 1 25799999988766554
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.38 Score=44.62 Aligned_cols=93 Identities=25% Similarity=0.293 Sum_probs=59.2
Q ss_pred cCCCCCCEEEEEcCCC--chHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-----cCCC
Q 016992 118 KFLFKDKVVLDVGAGT--GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----ELPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~--G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 187 (379)
....++++||..|+|. |..+..+++ . |+ +|+++|.++ .++.+++ .|. + ..+-..+ .+. ....
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~----~g~-~-~~~~~~~-~~~~~~~~~~~~ 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR----AGA-D-YVINASM-QDPLAEIRRITE 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH----HTC-S-EEEETTT-SCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCC-C-EEecCCC-ccHHHHHHHHhc
Confidence 5677899999999984 455566666 5 76 899999998 8877754 243 2 1121111 111 0111
Q ss_pred -CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 -TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 -~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+|+|+... +. ...+....+.|+++|.++.
T Consensus 238 ~~~~d~vi~~~-g~--------~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 238 SKGVDAVIDLN-NS--------EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp TSCEEEEEESC-CC--------HHHHTTGGGGEEEEEEEEE
T ss_pred CCCceEEEECC-CC--------HHHHHHHHHHHhcCCEEEE
Confidence 4799998542 11 2355666789999999873
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.11 Score=48.92 Aligned_cols=91 Identities=24% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeE
Q 016992 120 LFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (379)
Q Consensus 120 ~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 192 (379)
..+|.+||-.|+ | .|..+..+++ .|+ +|++++ ++ ..+.++ ..|.. .++..+-.++. .....+|+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHTSCCBSE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhhcCCCCE
Confidence 678999999993 4 4677777777 576 899998 55 655554 34542 12221111110 11146999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+-. .+. ....+....+.|++||.++.
T Consensus 252 vid~-~g~-------~~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 252 ILDN-VGG-------STETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp EEES-SCT-------THHHHGGGGBCSSSCCEEEE
T ss_pred EEEC-CCC-------hhhhhHHHHHhhcCCcEEEE
Confidence 9853 221 11234555688999999873
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.1 Score=48.81 Aligned_cols=96 Identities=24% Similarity=0.239 Sum_probs=60.0
Q ss_pred HHhccCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|.+||-.|+ | .|..+..+++ .|+ +|+++|.++ .++.+++ .|.. .++..+-.++.
T Consensus 159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~~~ 230 (353)
T 4dup_A 159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK---RGINYRSEDFAAVIKA 230 (353)
T ss_dssp HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEEeCCchHHHHHHHH
Confidence 334456788999999953 3 3667777777 576 899999998 8887765 3432 12221111110
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+... +. . .+....+.|+++|.++.
T Consensus 231 ~~~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~ 263 (353)
T 4dup_A 231 ETGQGVDIILDMI-GA-----A----YFERNIASLAKDGCLSI 263 (353)
T ss_dssp HHSSCEEEEEESC-CG-----G----GHHHHHHTEEEEEEEEE
T ss_pred HhCCCceEEEECC-CH-----H----HHHHHHHHhccCCEEEE
Confidence 0025799998532 21 1 34556688999999874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.85 Score=42.95 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+.+||.++.+-|.++..++.. .++.+.-|- .....+.|+..|++.. .+++... ... + ...+|+|+..+.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~-~~~~~~v~~~lp- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--Y-PQQPGVVLIKVP- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--C-CSSCSEEEEECC-
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--c-ccCCCEEEEEcC-
Confidence 4567999999999999888754 345553344 5567788999999864 3666532 121 2 378999997653
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.....+...|..+...|+||+.++
T Consensus 110 ---k~~~~l~~~L~~l~~~l~~~~~i~ 133 (375)
T 4dcm_A 110 ---KTLALLEQQLRALRKVVTSDTRII 133 (375)
T ss_dssp ---SCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred ---CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 333667788888999999999886
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.4 Score=44.68 Aligned_cols=94 Identities=21% Similarity=0.121 Sum_probs=57.2
Q ss_pred hccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----c--C
Q 016992 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--L 185 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~ 185 (379)
......+|++||-.|+ |.|..+..+++ .|+ +|+++|.++ .++.+++ .|. + . ++..+-.++ . .
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g~-~-~-~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK----LGA-A-A-GFNYKKEDFSEATLKFT 227 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTC-S-E-EEETTTSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC-c-E-EEecCChHHHHHHHHHh
Confidence 3456778999999985 34556666666 576 899999988 8777743 243 2 1 121111111 0 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....+|+|+... +. . .+....+.|++||.++.
T Consensus 228 ~~~~~d~vi~~~-G~-----~----~~~~~~~~l~~~G~iv~ 259 (354)
T 2j8z_A 228 KGAGVNLILDCI-GG-----S----YWEKNVNCLALDGRWVL 259 (354)
T ss_dssp TTSCEEEEEESS-CG-----G----GHHHHHHHEEEEEEEEE
T ss_pred cCCCceEEEECC-Cc-----h----HHHHHHHhccCCCEEEE
Confidence 124699998542 21 1 24455688999999873
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.46 Score=48.44 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-----------C--CCEEEEEec---HH-HHHH-----------HHHHHHHcCC--C-
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-----------G--AAHVYAVEC---SQ-MANM-----------AKQIVEANGF--S- 170 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-----------g--~~~v~~vD~---s~-~~~~-----------a~~~~~~~~~--~- 170 (379)
+.-+|||+|-|+|...+.+.+. . .-+++++|. +. .+.. +++....... +
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 3458999999999766655431 1 136899998 43 3331 2232322211 0
Q ss_pred ----------CcEEEEEcceeecc--CC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 171 ----------NVITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 171 ----------~~i~~~~~d~~~~~--~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
-.+++..+|+.+.- +. ...||+++.+.+......+-.-..++..+.++++|||.+....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 12456667765532 11 3679999987653322222123678899999999999987543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.38 Score=50.01 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHcC------CCEEEEEecHH-HHHHHHHHH
Q 016992 123 DKVVLDVGAGTGILSLFCAKAG------AAHVYAVECSQ-MANMAKQIV 164 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g------~~~v~~vD~s~-~~~~a~~~~ 164 (379)
..+||||-||.|+++.-+.++| ...+.++|+++ +++.-+.|.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3589999999999999887765 45788999999 877766664
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.58 E-value=0.26 Score=45.48 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=37.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH----HHHHHHHHHHHcC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ----MANMAKQIVEANG 168 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~----~~~~a~~~~~~~~ 168 (379)
..+|..|||.-||+|..+..+.+.|. +.+|+|+++ .++.+++++.+.+
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence 36889999999999999999988875 999999995 5677777776544
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.65 Score=43.00 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=59.3
Q ss_pred HHhccCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.......+|.+||-+|+ | .|.++..+++ .|+ +|+++ .++ .++.+++ .|.. . +. +..++.
T Consensus 142 l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~--~--i~-~~~~~~~~~~~ 210 (343)
T 3gaz_A 142 LVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT--P--ID-ASREPEDYAAE 210 (343)
T ss_dssp HTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE--E--EE-TTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC--E--ec-cCCCHHHHHHH
Confidence 334456788999999994 3 3777777777 576 89999 777 7776654 3432 1 22 211111
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+-. .+ . ..+....+.|+++|.++.
T Consensus 211 ~~~~~g~D~vid~-~g------~---~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 211 HTAGQGFDLVYDT-LG------G---PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp HHTTSCEEEEEES-SC------T---HHHHHHHHHEEEEEEEEE
T ss_pred HhcCCCceEEEEC-CC------c---HHHHHHHHHHhcCCeEEE
Confidence 122579998853 21 1 245666688999999884
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.38 E-value=0.17 Score=46.69 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=41.6
Q ss_pred CcEEEE-Ecceeec--cCCCCceeEEEEecCccccC---------ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 171 NVITVL-KGKIEEI--ELPVTKVDIIISEWMGYFLL---------FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 171 ~~i~~~-~~d~~~~--~~~~~~~D~Iv~~~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
....++ ++|+.+. .+++++||+|+++++ |... ....+...+.++.++|+|||.++..
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPP-Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 346788 9998764 245679999999975 5443 1124567788889999999998854
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.7 Score=38.58 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=60.0
Q ss_pred CEEEEEcCCCchHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 124 KVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~----g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
++||-.| + |.++..+++. |. +|++++.++ ....... .+++++.+|+.++. ...+|+||....
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCC
Confidence 5899999 4 8888888762 54 999999887 5443322 34899999999876 478999997532
Q ss_pred ccccCChhhHHHHHHHHHhcc-cCCEEEEecCCceE
Q 016992 199 GYFLLFENMLNTVLYARDKWL-VDDGIVLPDKASLY 233 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~~~~~~ 233 (379)
...........+++.+.+.- +..-.++.++..+|
T Consensus 73 -~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vy 107 (286)
T 3ius_A 73 -PDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVY 107 (286)
T ss_dssp -CBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGG
T ss_pred -ccccccHHHHHHHHHHHhhcCCceEEEEeecceec
Confidence 22122233455566555431 22334444444444
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.29 E-value=1.4 Score=39.15 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecH------------H-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS------------Q-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s------------~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
..+++||-.|++.| .++..+++.|+ +|+.+|.+ . .++.+...+...+ .++.++.+|+.+..
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA 84 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence 46789999998765 23444555576 89999976 5 5555555555554 46899999987643
Q ss_pred C-----C-----CCceeEEEEecCcccc----CChhhH-----------HHHHHHHHhcccCCEEEE
Q 016992 185 L-----P-----VTKVDIIISEWMGYFL----LFENML-----------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ~-----~-----~~~~D~Iv~~~~~~~l----~~~~~~-----------~~~l~~~~~~LkpgG~li 226 (379)
. . .+.+|++|.+. +... .....+ -.+++.+.+.++.+|.++
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nA-g~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 150 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANA-GICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASII 150 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC-CCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEECC-CcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEE
Confidence 1 0 14789999864 1111 111222 234556667777788876
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.17 Score=47.38 Aligned_cols=94 Identities=22% Similarity=0.188 Sum_probs=56.9
Q ss_pred cCCC-CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeE
Q 016992 118 KFLF-KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDI 192 (379)
Q Consensus 118 ~~~~-~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~ 192 (379)
.... +|.+||-+|+|. |.++..+++ .|+ +|++++.++ .++.+++ ..|... + +-..+...+. .. +.+|+
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~~-v-i~~~~~~~~~~~~-~g~D~ 247 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGADD-Y-VIGSDQAKMSELA-DSLDY 247 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCCSC-E-EETTCHHHHHHST-TTEEE
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCCce-e-eccccHHHHHHhc-CCCCE
Confidence 3456 899999999864 666677777 577 899999998 7776652 244322 1 1111111111 12 46999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+-. .+. .. .+....+.|+++|+++.
T Consensus 248 vid~-~g~----~~----~~~~~~~~l~~~G~iv~ 273 (357)
T 2cf5_A 248 VIDT-VPV----HH----ALEPYLSLLKLDGKLIL 273 (357)
T ss_dssp EEEC-CCS----CC----CSHHHHTTEEEEEEEEE
T ss_pred EEEC-CCC----hH----HHHHHHHHhccCCEEEE
Confidence 9853 221 11 13344578999999873
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=91.12 E-value=0.29 Score=45.77 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=55.8
Q ss_pred HHhccCCCCC-CEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc------ceee
Q 016992 114 IYQNKFLFKD-KVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG------KIEE 182 (379)
Q Consensus 114 i~~~~~~~~~-~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~------d~~~ 182 (379)
+.......+| .+||-.|+ | .|.++..+|+ .|+ +|+++..+. .+...++.++..|... ++.. ++.+
T Consensus 158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~---vi~~~~~~~~~~~~ 233 (364)
T 1gu7_A 158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ---VITEDQNNSREFGP 233 (364)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE---EEEHHHHHCGGGHH
T ss_pred HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeE---EEecCccchHHHHH
Confidence 3333456789 99999997 3 4777888888 577 777776443 3222222334456521 2221 1111
Q ss_pred -cc-C---CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 183 -IE-L---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 183 -~~-~---~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+. . ....+|+|+-. .+ . .... ...+.|+++|+++.
T Consensus 234 ~i~~~t~~~~~g~Dvvid~-~G-------~-~~~~-~~~~~l~~~G~~v~ 273 (364)
T 1gu7_A 234 TIKEWIKQSGGEAKLALNC-VG-------G-KSST-GIARKLNNNGLMLT 273 (364)
T ss_dssp HHHHHHHHHTCCEEEEEES-SC-------H-HHHH-HHHHTSCTTCEEEE
T ss_pred HHHHHhhccCCCceEEEEC-CC-------c-hhHH-HHHHHhccCCEEEE
Confidence 10 0 12469999842 21 1 1223 45689999999874
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=3.4 Score=38.18 Aligned_cols=120 Identities=9% Similarity=0.109 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCCC-CCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHHcC-------------
Q 016992 105 VRTKSYQNVIYQNKFLF-KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANG------------- 168 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~-~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~~~~~a~~~~~~~~------------- 168 (379)
.|+..+...+.+.+... +...|+-||||.=.....+... ...+++=||..+.++.=++.+...+
T Consensus 72 ~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~ 151 (334)
T 3iei_A 72 ARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSED 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhccccccc
Confidence 45555555554443322 4579999999988777776653 2357888888774444334444311
Q ss_pred ---------CCCcEEEEEcceeecc----------CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 169 ---------FSNVITVLKGKIEEIE----------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 169 ---------~~~~i~~~~~d~~~~~----------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-+.+..++..|+.+.. ++....-+++++.+..++. +.....+++.+..... +|.++
T Consensus 152 ~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~-~~~~~~ll~~ia~~f~-~~~~i 226 (334)
T 3iei_A 152 TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMT-PEQSANLLKWAANSFE-RAMFI 226 (334)
T ss_dssp SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHCS-SEEEE
T ss_pred ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCC-HHHHHHHHHHHHHhCC-CceEE
Confidence 1367889999987631 2335567899998766554 4566788888887664 45444
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=0.4 Score=44.70 Aligned_cols=95 Identities=14% Similarity=0.290 Sum_probs=56.4
Q ss_pred cCCCCC------CEEEEEcCCC-chHH-HHHH-H-cCCCEEEEEecHH----HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 118 KFLFKD------KVVLDVGAGT-GILS-LFCA-K-AGAAHVYAVECSQ----MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 118 ~~~~~~------~~VLDlGcG~-G~~~-~~la-~-~g~~~v~~vD~s~----~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
....+| .+||-+|+|. |.++ ..+| + .|+.+|+++|.++ .++.++ +.|. +.+.....|+.++
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----~lGa-~~v~~~~~~~~~i 236 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----ELDA-TYVDSRQTPVEDV 236 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----HTTC-EEEETTTSCGGGH
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----HcCC-cccCCCccCHHHH
Confidence 345678 9999999864 6777 7778 6 5776699999865 344443 4554 1120000011111
Q ss_pred -cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 -ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 -~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
... +.+|+|+-. .+ . ...+....+.|+++|+++.
T Consensus 237 ~~~~-gg~Dvvid~-~g----~----~~~~~~~~~~l~~~G~iv~ 271 (357)
T 2b5w_A 237 PDVY-EQMDFIYEA-TG----F----PKHAIQSVQALAPNGVGAL 271 (357)
T ss_dssp HHHS-CCEEEEEEC-SC----C----HHHHHHHHHHEEEEEEEEE
T ss_pred HHhC-CCCCEEEEC-CC----C----hHHHHHHHHHHhcCCEEEE
Confidence 012 379999842 21 1 2345666788999999873
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=90.82 E-value=0.47 Score=44.23 Aligned_cols=100 Identities=11% Similarity=0.154 Sum_probs=55.3
Q ss_pred HHhccCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc------ceeec
Q 016992 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG------KIEEI 183 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~------d~~~~ 183 (379)
+.......+|.+||-+|+ | .|.++..+|+ .|+..|..++.++ .-+. .+.++..|.. .++.. ++.++
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~~~~~lGa~---~vi~~~~~~~~~~~~~ 234 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKL-SDRLKSLGAE---HVITEEELRRPEMKNF 234 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHH-HHHHHHTTCS---EEEEHHHHHSGGGGGT
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHH-HHHHHhcCCc---EEEecCcchHHHHHHH
Confidence 334456789999999997 3 4788888888 5875555665543 2111 1223445642 12221 11111
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.-....+|+|+-. .+ . ... ....+.|+++|+++.
T Consensus 235 ~~~~~~~Dvvid~-~g-------~-~~~-~~~~~~l~~~G~iv~ 268 (357)
T 1zsy_A 235 FKDMPQPRLALNC-VG-------G-KSS-TELLRQLARGGTMVT 268 (357)
T ss_dssp TSSSCCCSEEEES-SC-------H-HHH-HHHHTTSCTTCEEEE
T ss_pred HhCCCCceEEEEC-CC-------c-HHH-HHHHHhhCCCCEEEE
Confidence 1111248998842 21 1 112 235689999999874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.85 Score=36.12 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=52.6
Q ss_pred CEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEe
Q 016992 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (379)
Q Consensus 124 ~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (379)
.+|+-+|+|. | .++..+.+.|. .|+++|.++ .++.+++ .| +.++.+|..+.. .....+|+|++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 4788888864 3 22333334565 999999999 7776653 22 578888876542 123578998864
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. . ......+-...+.+.|+..++
T Consensus 79 ~~-----~-~~~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 79 IP-----N-GYEAGEIVASARAKNPDIEII 102 (140)
T ss_dssp CS-----C-HHHHHHHHHHHHHHCSSSEEE
T ss_pred CC-----C-hHHHHHHHHHHHHHCCCCeEE
Confidence 21 1 111222233445667777665
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.54 E-value=1 Score=39.64 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++...+.+ + .++.++.+|+.+... .
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999998765 23444455576 899999988 665554443 2 468999999876531 0
Q ss_pred CCceeEEEEecCccccC------ChhhH-----------HHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLL------FENML-----------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~------~~~~~-----------~~~l~~~~~~LkpgG~li 226 (379)
.+.+|++|.+. +.... ....+ -.+.+.+...++++|.++
T Consensus 80 ~g~id~lv~nA-g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv 135 (255)
T 4eso_A 80 LGAIDLLHINA-GVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIV 135 (255)
T ss_dssp HSSEEEEEECC-CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred hCCCCEEEECC-CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEE
Confidence 24789999763 11110 11111 134555667777788876
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.66 Score=41.70 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|--|++.| ..+..+++.|+ +|+.+|.++ .++.+.+.+ + .++..+.+|+.+... .
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999998887 34555566677 999999998 666554333 3 457788889876431 1
Q ss_pred CCceeEEEEecCccccC------ChhhH-----------HHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLL------FENML-----------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~------~~~~~-----------~~~l~~~~~~LkpgG~li 226 (379)
.++.|++|.+. +.... .+.++ -.+.+++.+.++.+|.+|
T Consensus 101 ~G~iDiLVNNA-G~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~II 156 (273)
T 4fgs_A 101 AGRIDVLFVNA-GGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVV 156 (273)
T ss_dssp HSCEEEEEECC-CCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEE
T ss_pred cCCCCEEEECC-CCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEE
Confidence 36799999864 11110 11122 134455667788888776
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=1.7 Score=38.23 Aligned_cols=104 Identities=12% Similarity=0.091 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCC--Cc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C---
Q 016992 121 FKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG--~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (379)
..+++||-.|++ .| .++..+++.|+ +|+.++.++ ..+.+.+.....+- .++.++.+|+.+... .
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999987 44 24455556676 899999887 66666666555442 258899999876531 0
Q ss_pred --CCceeEEEEecCccc--------c-CChhhH-----------HHHHHHHHhcccCCEEEE
Q 016992 187 --VTKVDIIISEWMGYF--------L-LFENML-----------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 --~~~~D~Iv~~~~~~~--------l-~~~~~~-----------~~~l~~~~~~LkpgG~li 226 (379)
.+.+|++|...-... . .....+ ..+++.+...++++|.+|
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv 144 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIV 144 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEE
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEE
Confidence 146899997641110 0 011111 135566777888888877
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.28 Score=46.74 Aligned_cols=42 Identities=17% Similarity=-0.079 Sum_probs=35.2
Q ss_pred CEEEEEcCCCchHHHHHHHcC--CCE----EEEEecHH-HHHHHHHHHH
Q 016992 124 KVVLDVGAGTGILSLFCAKAG--AAH----VYAVECSQ-MANMAKQIVE 165 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g--~~~----v~~vD~s~-~~~~a~~~~~ 165 (379)
.+|||+.||.|+++..+-++| ..- |.++|+++ ++..-+.+..
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 489999999999999998876 345 89999999 8877777664
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.73 Score=42.39 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=67.0
Q ss_pred CCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC---------CcEEEEEcceee
Q 016992 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS---------NVITVLKGKIEE 182 (379)
Q Consensus 123 ~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~~---------~~i~~~~~d~~~ 182 (379)
..+|.-||+|+ | .++..+|..|. .|+.+|+++ .++.+.+++... + +. .+|++. .|..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~ 83 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAE 83 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHh
Confidence 45899999997 3 56677777876 999999999 888777666432 1 11 123322 12222
Q ss_pred ccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 183 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 183 ~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
. -...|+|+=. + .........++.++.++++|+.+|--++-++-
T Consensus 84 a---~~~ad~ViEa-v---~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~ 127 (319)
T 3ado_A 84 A---VEGVVHIQEC-V---PENLDLKRKIFAQLDSIVDDRVVLSSSSSCLL 127 (319)
T ss_dssp H---TTTEEEEEEC-C---CSCHHHHHHHHHHHHTTCCSSSEEEECCSSCC
T ss_pred H---hccCcEEeec-c---ccHHHHHHHHHHHHHHHhhhcceeehhhhhcc
Confidence 1 1567888732 2 34446678999999999999988875555443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.12 E-value=0.2 Score=46.08 Aligned_cols=94 Identities=21% Similarity=0.147 Sum_probs=55.8
Q ss_pred CCCCCC-EEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeE
Q 016992 119 FLFKDK-VVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDI 192 (379)
Q Consensus 119 ~~~~~~-~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 192 (379)
...++. +||-+|+ |.|.++..+++ .|+ +|++++.++ .++.+++ .|...-+.....+...+ ......+|+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~d~ 219 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWAA 219 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEEE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcEEEecCCcHHHHHHHhcCCcccE
Confidence 456665 8999997 34777778887 576 799999988 7777754 45421111111110001 112246999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+-. .+ . . .+....+.|+++|+++.
T Consensus 220 vid~-~g----~-~----~~~~~~~~l~~~G~~v~ 244 (328)
T 1xa0_A 220 AVDP-VG----G-R----TLATVLSRMRYGGAVAV 244 (328)
T ss_dssp EEEC-ST----T-T----THHHHHHTEEEEEEEEE
T ss_pred EEEC-Cc----H-H----HHHHHHHhhccCCEEEE
Confidence 8853 22 1 1 24556688999999874
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.91 Score=49.64 Aligned_cols=77 Identities=22% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---------------c
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---------------E 184 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---------------~ 184 (379)
...+++||-||.|++++.+.++|. ..|.++|+++ +++.-+.+.. ...++.+|+.++ .
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 345899999999999999999986 5788999999 7776665532 234566665422 1
Q ss_pred CC-CCceeEEEEecCccccCC
Q 016992 185 LP-VTKVDIIISEWMGYFLLF 204 (379)
Q Consensus 185 ~~-~~~~D~Iv~~~~~~~l~~ 204 (379)
++ .+.+|+|+..++|..+..
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~ 944 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSG 944 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCS
T ss_pred ccccCccceEEecCCCccccc
Confidence 11 246899999887766543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.81 E-value=0.46 Score=45.79 Aligned_cols=95 Identities=21% Similarity=0.158 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-------------
Q 016992 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI------------- 180 (379)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~------------- 180 (379)
....+|++||-.|+ | .|..+..+++ .|+ +|++++.++ .++.+++ .|....+.....|.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence 56788999999997 3 3677777777 466 889999888 7777753 45432111111111
Q ss_pred ------eecc-CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 181 ------EEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 181 ------~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+. .....+|+|+... + . ..+....+.|++||.++.
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~-G-------~--~~~~~~~~~l~~~G~iv~ 334 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHT-G-------R--VTFGLSVIVARRGGTVVT 334 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECS-C-------H--HHHHHHHHHSCTTCEEEE
T ss_pred hhhHHHHHHHHHhCCCceEEEECC-C-------c--hHHHHHHHHHhcCCEEEE
Confidence 0000 0025699998532 1 1 245666688999999884
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.76 E-value=0.24 Score=44.13 Aligned_cols=55 Identities=11% Similarity=-0.025 Sum_probs=39.2
Q ss_pred EEEEEcceeec--cCCCCceeEEEEecCccccCCh------------hhHHHHHHHHHhcccCCEEEEec
Q 016992 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLLFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+++++|+.+. .+++++||+|+++++ |..... ..+...+.++.++|+|||.++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPP-Y~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCC-CCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45788887653 244579999999975 543310 24567788889999999998743
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=1.6 Score=39.17 Aligned_cols=103 Identities=25% Similarity=0.318 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
..+++||-.|++.| .++..+++.|+ +|+.++.+. ..+.+.+.+...+ .++.++.+|+.+...
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999998765 23344455576 899998765 4444455454444 468999999876431
Q ss_pred CCCceeEEEEecCccc----cC--ChhhH-----------HHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGYF----LL--FENML-----------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~----l~--~~~~~-----------~~~l~~~~~~LkpgG~li 226 (379)
..+.+|++|.+.-... +. ....+ -.+++.+.+.++++|.+|
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv 179 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVII 179 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEE
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEE
Confidence 0247899998631111 00 11111 245566677778888776
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=3.3 Score=37.15 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCc-----hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---------
Q 016992 121 FKDKVVLDVGAGTG-----ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G-----~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (379)
..+++||-.|++.| .++..+++.|+ +|+.++.++ ..+.+++.....+ ++.++.+|+.+...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 56889999998743 34445555676 899999887 6666666555543 48889999876431
Q ss_pred -CCCceeEEEEec
Q 016992 186 -PVTKVDIIISEW 197 (379)
Q Consensus 186 -~~~~~D~Iv~~~ 197 (379)
..+++|++|.+.
T Consensus 105 ~~~g~iD~lVnnA 117 (293)
T 3grk_A 105 KKWGKLDFLVHAI 117 (293)
T ss_dssp HHTSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 125789999864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.50 E-value=0.37 Score=45.17 Aligned_cols=93 Identities=23% Similarity=0.179 Sum_probs=55.0
Q ss_pred CCC-CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceeeccCCCCceeEE
Q 016992 119 FLF-KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDII 193 (379)
Q Consensus 119 ~~~-~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~I 193 (379)
... +|.+||-+|+|. |.++..+++ .|+ +|++++.++ .++.+++ ..|.. .++.. +...+....+.+|+|
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~~~~~D~v 255 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAAAGTLDGI 255 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHTTTCEEEE
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHhhCCCCEE
Confidence 456 899999999764 566666666 576 899999988 7666542 23432 12211 111111011479999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... +.. . .+....+.|+++|.++.
T Consensus 256 id~~-g~~----~----~~~~~~~~l~~~G~iv~ 280 (366)
T 1yqd_A 256 IDTV-SAV----H----PLLPLFGLLKSHGKLIL 280 (366)
T ss_dssp EECC-SSC----C----CSHHHHHHEEEEEEEEE
T ss_pred EECC-CcH----H----HHHHHHHHHhcCCEEEE
Confidence 8532 211 1 12334577899999873
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.37 E-value=1.7 Score=38.59 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
..++++|-.|++.| .++..+++.|+ +|+.++.. . ..+...+.+...+ .++.++.+|+.+...
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 57889999998775 23444555676 78887543 3 5555555555554 458899999876431
Q ss_pred CCCceeEEEEecCccccC------ChhhH-----------HHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGYFLL------FENML-----------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~------~~~~~-----------~~~l~~~~~~LkpgG~li 226 (379)
..+++|++|.+. +.... ....+ -.+++.+.+.++++|.+|
T Consensus 106 ~~g~iD~lvnnA-g~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv 162 (271)
T 3v2g_A 106 ALGGLDILVNSA-GIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRII 162 (271)
T ss_dssp HHSCCCEEEECC-CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEE
T ss_pred HcCCCcEEEECC-CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEE
Confidence 014789999864 11110 11111 234556667777788776
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=0.25 Score=45.44 Aligned_cols=91 Identities=24% Similarity=0.219 Sum_probs=57.1
Q ss_pred CCCCCC-EEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ce-ee-c-cCCCCc
Q 016992 119 FLFKDK-VVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KI-EE-I-ELPVTK 189 (379)
Q Consensus 119 ~~~~~~-~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~-~~-~-~~~~~~ 189 (379)
...++. +||-.|+ | .|..+..+++ .|+ +|++++.++ .++.+++ .|... ++.. +. .+ + ......
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~---v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGASE---VISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCSE---EEEHHHHCSSCCCSSCCCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCcE---EEECCCchHHHHHHhhcCC
Confidence 456675 8999997 3 4677777777 576 799999988 8777764 34321 2211 11 01 1 112246
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+|+-. .+ . ..+....+.|++||+++.
T Consensus 218 ~d~vid~-~g-------~--~~~~~~~~~l~~~G~iv~ 245 (330)
T 1tt7_A 218 WQGAVDP-VG-------G--KQLASLLSKIQYGGSVAV 245 (330)
T ss_dssp EEEEEES-CC-------T--HHHHHHHTTEEEEEEEEE
T ss_pred ccEEEEC-Cc-------H--HHHHHHHHhhcCCCEEEE
Confidence 9998843 21 1 245666789999999874
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=89.23 E-value=1.2 Score=39.55 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|--|++.|+ ++..+++.|+ +|+.+|.++ .++.+.+.+...| .++.++.+|+.+... .
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999988873 4555566676 899999999 8887777777766 458899999876431 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 82 ~G~iDiLVNNA 92 (254)
T 4fn4_A 82 YSRIDVLCNNA 92 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 26789999864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.95 E-value=0.7 Score=41.07 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57899999998876 34555566677 999999998 7777767777766 35888888987642 12
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 84 ~G~iDiLVNNA 94 (255)
T 4g81_D 84 GIHVDILINNA 94 (255)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCcEEEECC
Confidence 36899999864
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=88.75 E-value=1.3 Score=39.17 Aligned_cols=103 Identities=22% Similarity=0.291 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
..++++|-.|++.|+ ++..+++.|+ +|+.++.. . ..+...+.+...+ .++.++.+|+.+...
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999987652 3444555676 88887653 4 5555555565554 458899999876431
Q ss_pred CCCceeEEEEecCccccC------ChhhH-----------HHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLL------FENML-----------NTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~------~~~~~-----------~~~l~~~~~~LkpgG~lip 227 (379)
..+..|++|.+. +.... ....+ -.+.+.+.+.++++|.+|.
T Consensus 93 ~~g~id~lvnnA-g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~ 150 (270)
T 3is3_A 93 HFGHLDIAVSNS-GVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVL 150 (270)
T ss_dssp HHSCCCEEECCC-CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred HcCCCCEEEECC-CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEE
Confidence 014689999753 11110 11111 2345566677777887763
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=88.75 E-value=0.16 Score=47.65 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
++++|+-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++.... .+..+..+..++......+|+||....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~ 239 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL 239 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCC
Confidence 458999999863 333333344 587 999999998 77777654422 222222221121100135899986431
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.... ..+.-+.....+.++|||.++-
T Consensus 240 ~~~~---~~~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 240 VPGR---RAPILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp CTTS---SCCCCBCHHHHTTSCTTCEEEE
T ss_pred cCCC---CCCeecCHHHHhhCCCCCEEEE
Confidence 1100 0000012334567899998873
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.54 E-value=2.2 Score=37.46 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=50.7
Q ss_pred CCCCCCEEEEEcCC-CchHHHH----HHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-------
Q 016992 119 FLFKDKVVLDVGAG-TGILSLF----CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL------- 185 (379)
Q Consensus 119 ~~~~~~~VLDlGcG-~G~~~~~----la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------- 185 (379)
...++++||-.|++ +|.++.. +++.|+ +|+.++.+. ..+.+++.....+ .+.++.+|+.+...
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHH
Confidence 34678899999985 2444444 444576 899998887 6666666555543 37788889876431
Q ss_pred ---CCCceeEEEEec
Q 016992 186 ---PVTKVDIIISEW 197 (379)
Q Consensus 186 ---~~~~~D~Iv~~~ 197 (379)
..+++|++|.+.
T Consensus 86 ~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHCSCEEEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 125789999864
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=1.3 Score=38.90 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCchHHHHH----HH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C----
Q 016992 122 KDKVVLDVGAGTGILSLFC----AK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~l----a~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (379)
++++||-.|++ |.++..+ ++ .|. +|++++.+. .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 3 ~~k~vlITGas-ggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 3 GIHVALVTGGN-KGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCCEEEESSCS-SHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence 56788888855 5555544 44 565 899999887 6666655565544 458889999876421 0
Q ss_pred -CCceeEEEEec
Q 016992 187 -VTKVDIIISEW 197 (379)
Q Consensus 187 -~~~~D~Iv~~~ 197 (379)
.+.+|+||...
T Consensus 79 ~~g~id~li~~A 90 (276)
T 1wma_A 79 EYGGLDVLVNNA 90 (276)
T ss_dssp HHSSEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 13789999753
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.98 E-value=2.2 Score=38.32 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecH--H-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS--Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s--~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (379)
..+++||-.|++.| .++..+++.|+ +|+.++.+ . ..+.+.+.+...+ .++.++.+|+.+...
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 36789999997765 23344445576 89988876 3 4555555555555 458899999876421
Q ss_pred -CCCceeEEEEecCccc-cC-----ChhhH-----------HHHHHHHHhcccCCEEEEe
Q 016992 186 -PVTKVDIIISEWMGYF-LL-----FENML-----------NTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 -~~~~~D~Iv~~~~~~~-l~-----~~~~~-----------~~~l~~~~~~LkpgG~lip 227 (379)
..+.+|++|.+.-... .. ....+ -.+++.+...++++|.+|.
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~ 183 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT 183 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 0147899998642111 00 11111 2445666677888888773
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.85 E-value=1.2 Score=39.21 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEE-ecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C----
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAV-ECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~v-D~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (379)
..+++||-.|++.| .++..+++.|+ +|+.+ +.+. ..+.+.+.+...+ .++.++.+|+.+... .
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999998776 23444555676 77777 6555 5555555555444 458889999876431 0
Q ss_pred -CCceeEEEEec
Q 016992 187 -VTKVDIIISEW 197 (379)
Q Consensus 187 -~~~~D~Iv~~~ 197 (379)
.+.+|++|.+.
T Consensus 83 ~~g~id~lv~nA 94 (259)
T 3edm_A 83 KFGEIHGLVHVA 94 (259)
T ss_dssp HHCSEEEEEECC
T ss_pred HhCCCCEEEECC
Confidence 14789999864
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=4.3 Score=36.29 Aligned_cols=60 Identities=18% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCCCEEEEEcCCCchHHHH----HHHcCCCEEEEEe-cHH-HHHHHHHHHH-HcCCCCcEEEEEcceeecc
Q 016992 121 FKDKVVLDVGAGTGILSLF----CAKAGAAHVYAVE-CSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~----la~~g~~~v~~vD-~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~ 184 (379)
..++++|-.|++.| ++.. +++.|+ +|+.++ .++ .++.+.+.+. ..+ .++.++.+|+.+..
T Consensus 7 l~~k~~lVTGas~G-IG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 7 PTVPVALVTGAAKR-LGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 73 (291)
T ss_dssp -CCCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCcc
Confidence 35778998887665 4444 444576 899999 887 6665555554 333 45889999987654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=3 Score=37.45 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCC--c---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C---
Q 016992 121 FKDKVVLDVGAGT--G---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~--G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (379)
..+++||-.|++. | .++..+++.|+ +|+.++.++ ..+.+.+.....+ .+.++.+|+.+... .
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 103 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLA 103 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHH
Confidence 4578999999864 4 24455555676 899999887 6666666555544 36788889876431 0
Q ss_pred --CCceeEEEEec
Q 016992 187 --VTKVDIIISEW 197 (379)
Q Consensus 187 --~~~~D~Iv~~~ 197 (379)
.+.+|++|.+.
T Consensus 104 ~~~g~iD~lVnnA 116 (296)
T 3k31_A 104 EEWGSLDFVVHAV 116 (296)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 14789999864
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.48 E-value=3 Score=40.37 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=60.4
Q ss_pred CEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C------CCcEEEEEcceeeccCC
Q 016992 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F------SNVITVLKGKIEEIELP 186 (379)
Q Consensus 124 ~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~------~~~i~~~~~d~~~~~~~ 186 (379)
++|.-||+|. | .++..+++.|. .|+.+|.++ .++.+++.+..+ | + .....+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~--- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence 5799999997 2 45556666676 899999999 888776543211 1 0 011222 3343222
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
...|+||.... ........++..+...++|+.+++-++.
T Consensus 113 -~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~snTs 151 (463)
T 1zcj_A 113 -STVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCTNTS 151 (463)
T ss_dssp -TTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred -CCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEeCCC
Confidence 46899986432 1223346778888888999887775443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=1.1 Score=42.68 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEE
Q 016992 123 DKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDII 193 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~I 193 (379)
+.+|+-+|+|. ++..+++ .|. .|++||.++ .++.+++ .| +.++.+|+.+.. .....+|+|
T Consensus 4 ~~~viIiG~Gr--~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 4 GMRVIIAGFGR--FGQITGRLLLSSGV-KMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEE
Confidence 45688888764 4444443 454 899999999 8887763 23 568899988753 223678998
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+..- . ......+-...+.+.|+..++
T Consensus 73 iv~~~-----~-~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 73 INAID-----D-PQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp EECCS-----S-HHHHHHHHHHHHHHCTTCEEE
T ss_pred EECCC-----C-hHHHHHHHHHHHHhCCCCeEE
Confidence 86421 1 223334444556677886666
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=87.11 E-value=0.18 Score=47.62 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
.++++|+-+|+|. |.....+++ .|+ +|+++|.++ .++.+++.. |.. +.....+..++......+|+|+...
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~~l~~~l~~aDvVi~~~ 239 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAYELEGAVKRADLVIGAV 239 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TTS--SEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHHHHHHHHcCCCEEEECC
Confidence 4678999999854 333333333 577 999999998 776665432 321 2222111111110014689998632
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. .-.. ....-+.....+.+||||+++-
T Consensus 240 ~-~p~~--~t~~li~~~~l~~mk~g~~iV~ 266 (377)
T 2vhw_A 240 L-VPGA--KAPKLVSNSLVAHMKPGAVLVD 266 (377)
T ss_dssp C-CTTS--CCCCCBCHHHHTTSCTTCEEEE
T ss_pred C-cCCC--CCcceecHHHHhcCCCCcEEEE
Confidence 1 1010 0000112344577899999873
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.10 E-value=2 Score=38.05 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEe-cHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVE-CSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD-~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
..++++|-.|++.| .++..+++.|+ +|+.++ .+. ..+...+.+...+ .++.++.+|+.+...
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999998776 24445555677 777664 444 5555555555554 458899999876431
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+++|++|.+.
T Consensus 102 ~~g~iD~lvnnA 113 (267)
T 3u5t_A 102 AFGGVDVLVNNA 113 (267)
T ss_dssp HHSCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 014799999864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=2.1 Score=39.19 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=56.0
Q ss_pred CCEEEEEcCCC--chHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-ccCCCCceeEEEEec
Q 016992 123 DKVVLDVGAGT--GILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDIIISEW 197 (379)
Q Consensus 123 ~~~VLDlGcG~--G~~~~~la~~g~~-~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~Iv~~~ 197 (379)
..+|.-||+|. |.++..+++.|.. +|+++|.++ .++.+.+ .|..+ -...+..+ . ....|+|+...
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~---~~~~~~~~~~---~~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EGTTSIAKVE---DFSPDFVMLSS 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EEESCTTGGG---GGCCSEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc---hhcCCHHHHh---hccCCEEEEeC
Confidence 36899999875 3455555666643 899999998 7766543 34321 12233333 1 14679998643
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. .....++..+...|++|..++
T Consensus 103 p~------~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 PV------RTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CG------GGHHHHHHHHHHHSCTTCEEE
T ss_pred CH------HHHHHHHHHHhhccCCCcEEE
Confidence 21 345677888888899987765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=1.4 Score=40.99 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=50.7
Q ss_pred CCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecH----HHHHHHHHHHHHcCCCCcEEEEEcceeeccCC------CCce
Q 016992 123 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS----QMANMAKQIVEANGFSNVITVLKGKIEEIELP------VTKV 190 (379)
Q Consensus 123 ~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s----~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~ 190 (379)
|++||-+|+|. |..+..+++ .|+ +|+++|.+ +.++.++ ..|. ..+ | .+ .+. ...+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~----~~ga----~~v--~-~~-~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIE----ETKT----NYY--N-SS-NGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHH----HHTC----EEE--E-CT-TCSHHHHHHHCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHH----HhCC----cee--c-hH-HHHHHHHHhCCCC
Confidence 99999999843 455555665 577 99999986 3334443 3343 122 2 22 111 1469
Q ss_pred eEEEEecCccccCChhhHHHHH-HHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (379)
|+|+... +. ...+ ....+.|+++|.++.
T Consensus 248 d~vid~~-g~--------~~~~~~~~~~~l~~~G~iv~ 276 (366)
T 2cdc_A 248 DVIIDAT-GA--------DVNILGNVIPLLGRNGVLGL 276 (366)
T ss_dssp EEEEECC-CC--------CTHHHHHHGGGEEEEEEEEE
T ss_pred CEEEECC-CC--------hHHHHHHHHHHHhcCCEEEE
Confidence 9998542 11 1134 667789999999874
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=86.54 E-value=0.75 Score=41.52 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=47.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (379)
-|...+........+++||-+|+|.- ..+..+++.|+.+|+.++.+. ..+...+.+...+..-.+... +..++..
T Consensus 113 G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~--~~~~l~~ 190 (283)
T 3jyo_A 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGV--DARGIED 190 (283)
T ss_dssp HHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE--CSTTHHH
T ss_pred HHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEc--CHHHHHH
Confidence 34444544333467889999999621 223344456888999999987 655444444432211123322 2222211
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
....+|+||...
T Consensus 191 ~l~~~DiVInaT 202 (283)
T 3jyo_A 191 VIAAADGVVNAT 202 (283)
T ss_dssp HHHHSSEEEECS
T ss_pred HHhcCCEEEECC
Confidence 114689999753
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=1.7 Score=42.51 Aligned_cols=85 Identities=28% Similarity=0.260 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+|++|+-+|+|. |.....+++ .|+ +|+++|.++ .+..|++ .|. .+ .+..++ + ..+|+|+..
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~-l--~~aDvVi~a 336 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMM----EGF----DV--VTVEEA-I--GDADIVVTA 336 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC----EE--CCHHHH-G--GGCSEEEEC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH-H--hCCCEEEEC
Confidence 56899999999864 433333344 576 999999998 6665543 343 22 233332 1 468999964
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.-...+ +. ....+.+|+||+++
T Consensus 337 tgt~~~-----i~---~~~l~~mk~ggilv 358 (494)
T 3ce6_A 337 TGNKDI-----IM---LEHIKAMKDHAILG 358 (494)
T ss_dssp SSSSCS-----BC---HHHHHHSCTTCEEE
T ss_pred CCCHHH-----HH---HHHHHhcCCCcEEE
Confidence 211111 11 13446689999987
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=85.74 E-value=2.7 Score=36.97 Aligned_cols=73 Identities=25% Similarity=0.294 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecH---H-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-------
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECS---Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s---~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------- 185 (379)
..+++||-.|++.| ++..+++ .|+ +|+.++.+ . .++.+.+.+...+ .++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~ 84 (262)
T 3ksu_A 9 LKNKVIVIAGGIKN-LGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDF 84 (262)
T ss_dssp CTTCEEEEETCSSH-HHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHH
Confidence 46789999998765 4444444 465 88887643 3 4444444444433 468999999876431
Q ss_pred ---CCCceeEEEEec
Q 016992 186 ---PVTKVDIIISEW 197 (379)
Q Consensus 186 ---~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 85 ~~~~~g~iD~lvnnA 99 (262)
T 3ksu_A 85 AEKEFGKVDIAINTV 99 (262)
T ss_dssp HHHHHCSEEEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 014789999864
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.52 E-value=0.85 Score=42.72 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCCcee
Q 016992 121 FKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (379)
.+|.+||-+|++ .|.++..+|+ .|+ +|+++. ++ .++.+++ .|.. .++...-.++. ...+.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc---EEEECCCchHHHHHHHHccCCcc
Confidence 788999999984 5788888888 576 888885 67 7766654 4542 22322111110 1124599
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcc-cCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip 227 (379)
+|+-. ++ . ...+....+.| ++||+++.
T Consensus 234 ~v~d~-~g----~----~~~~~~~~~~l~~~~G~iv~ 261 (371)
T 3gqv_A 234 YALDC-IT----N----VESTTFCFAAIGRAGGHYVS 261 (371)
T ss_dssp EEEES-SC----S----HHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEC-CC----c----hHHHHHHHHHhhcCCCEEEE
Confidence 99842 21 1 23445556677 69999874
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.52 E-value=1.9 Score=37.83 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C----C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----V 187 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----~ 187 (379)
..+++||-.|++.| .++..+++.|+ +|+.++.+. .++.+.+.+...+ .++.++.+|+.+... . .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 46789999998876 23444555676 899999988 7777666666654 468999999876431 0 1
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+.+|++|.+.
T Consensus 82 g~id~lv~nA 91 (252)
T 3h7a_A 82 APLEVTIFNV 91 (252)
T ss_dssp SCEEEEEECC
T ss_pred CCceEEEECC
Confidence 4789999864
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.36 E-value=2.3 Score=35.13 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----C-CCCceeE
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----L-PVTKVDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~~D~ 192 (379)
.+.+|+-+|+|. | .++..+.+. |. .|+++|.++ .++.+++ .| +.++.+|..+.. . ....+|+
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCE
Confidence 356899998864 3 223333445 65 899999998 7665543 33 456677765421 1 2356899
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+.... .......++. ..+.+.|++.++
T Consensus 109 vi~~~~-----~~~~~~~~~~-~~~~~~~~~~ii 136 (183)
T 3c85_A 109 VLLAMP-----HHQGNQTALE-QLQRRNYKGQIA 136 (183)
T ss_dssp EEECCS-----SHHHHHHHHH-HHHHTTCCSEEE
T ss_pred EEEeCC-----ChHHHHHHHH-HHHHHCCCCEEE
Confidence 986321 1122222222 344556666666
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=84.94 E-value=5 Score=36.00 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=45.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
|...+........+++||-+|+|.- ..+..+++.|+.+|+.++.+. ..+...+.+...+ .+... +..++.
T Consensus 113 ~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~~l~-- 185 (281)
T 3o8q_A 113 LVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFEQLK-- 185 (281)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGGGCC--
T ss_pred HHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHHHhc--
Confidence 3444443333457889999998721 122233445777999999887 5444433333222 24444 333332
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
..+|+||+..
T Consensus 186 -~~aDiIInaT 195 (281)
T 3o8q_A 186 -QSYDVIINST 195 (281)
T ss_dssp -SCEEEEEECS
T ss_pred -CCCCEEEEcC
Confidence 6799999753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.84 E-value=3.2 Score=36.48 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..++++|-.|++.| .++..+++.|+ +|+.++.+. .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999998876 34445555676 899999988 7777766666655 468999999876431 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|++|.+.
T Consensus 86 ~g~id~lv~nA 96 (264)
T 3ucx_A 86 YGRVDVVINNA 96 (264)
T ss_dssp TSCCSEEEECC
T ss_pred cCCCcEEEECC
Confidence 25789999864
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=5.7 Score=40.82 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=68.2
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-----------C---CCCcEEEEEcceeeccCC
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-----------G---FSNVITVLKGKIEEIELP 186 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-----------~---~~~~i~~~~~d~~~~~~~ 186 (379)
++|--||+|+- .++..++..|. .|+.+|+++ .++.+++.+... . ...++.+ ..|..++
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l--- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCGGGG---
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcHHHH---
Confidence 58999999983 56666677776 999999999 888887766432 0 1122322 2233322
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
...|+||=. + .........++.++..+++|+.+|--++-++-+
T Consensus 392 -~~aDlVIEA-V---~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i 434 (742)
T 3zwc_A 392 -STVDLVVEA-V---FEDMNLKKKVFAELSALCKPGAFLCTNTSALNV 434 (742)
T ss_dssp -GSCSEEEEC-C---CSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH
T ss_pred -hhCCEEEEe-c---cccHHHHHHHHHHHhhcCCCCceEEecCCcCCh
Confidence 457988843 2 344466789999999999999988766555433
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.69 E-value=2.9 Score=36.37 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..+++||-.|++.| .++..+++.|+ +|+.+|.+. .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999997665 23444445576 899999998 7777666666554 468899999876431 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|++|.+.
T Consensus 84 ~g~id~li~~A 94 (253)
T 3qiv_A 84 FGGIDYLVNNA 94 (253)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14789999864
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.56 E-value=3 Score=37.36 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHH----HHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---------
Q 016992 122 KDKVVLDVGAGTGILSLF----CAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~----la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (379)
.+++||-.|++.| ++.. +++.|+ .+|+.++.+. .++.+.+.+....-..++.++.+|+.+...
T Consensus 32 ~~k~~lVTGas~G-IG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGASAG-IGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred CCCEEEEecCCCh-HHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5789999998765 3333 344454 3899999988 776666656553222468899999876531
Q ss_pred -CCCceeEEEEec
Q 016992 186 -PVTKVDIIISEW 197 (379)
Q Consensus 186 -~~~~~D~Iv~~~ 197 (379)
..+.+|++|.+.
T Consensus 111 ~~~g~iD~lVnnA 123 (287)
T 3rku_A 111 QEFKDIDILVNNA 123 (287)
T ss_dssp GGGCSCCEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 124789999864
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.49 E-value=0.48 Score=44.01 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=54.7
Q ss_pred HHhccCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc-----C
Q 016992 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (379)
+.+.....+|.+||-.|++ .|.++..+|+ .|..+|++++.....+.++ .|.. .++..+ .++. .
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~-----~ga~---~~~~~~-~~~~~~~~~~ 204 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIK-----DSVT---HLFDRN-ADYVQEVKRI 204 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHG-----GGSS---EEEETT-SCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHH-----cCCc---EEEcCC-ccHHHHHHHh
Confidence 3344567899999999983 3677777777 4667999998443444443 3432 222211 1110 1
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.+|+|+-.. +. . .+....+.|+++|+++.
T Consensus 205 ~~~g~Dvv~d~~-g~-----~----~~~~~~~~l~~~G~~v~ 236 (349)
T 4a27_A 205 SAEGVDIVLDCL-CG-----D----NTGKGLSLLKPLGTYIL 236 (349)
T ss_dssp CTTCEEEEEEEC-C----------------CTTEEEEEEEEE
T ss_pred cCCCceEEEECC-Cc-----h----hHHHHHHHhhcCCEEEE
Confidence 135799998532 11 1 12556689999999873
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=84.41 E-value=2.1 Score=33.60 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEE
Q 016992 123 DKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDII 193 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~I 193 (379)
.++|+-+|+|. ++..+++ .|. +|+++|.++ .++.+++ .+ +.++.+|..+.. .....+|+|
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~~~~~d~v 74 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGK-KVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLDLEGVSAV 74 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCCcccCCEE
Confidence 45789999854 4444443 465 899999998 7766653 22 577888876642 123578998
Q ss_pred EEe
Q 016992 194 ISE 196 (379)
Q Consensus 194 v~~ 196 (379)
+..
T Consensus 75 i~~ 77 (141)
T 3llv_A 75 LIT 77 (141)
T ss_dssp EEC
T ss_pred EEe
Confidence 864
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=84.30 E-value=4.4 Score=36.50 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=58.7
Q ss_pred CEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCC-C-------------CcEEEEEcc
Q 016992 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF-S-------------NVITVLKGK 179 (379)
Q Consensus 124 ~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-------~~~-~-------------~~i~~~~~d 179 (379)
++|.-||+|. | .++..+++.|. +|+.+|.++ .++.+++.+.. .|. . .++++. .|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~ 93 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 93 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cC
Confidence 5799999986 3 35666677776 999999998 87776543321 221 0 124432 23
Q ss_pred eeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+. + ...|+||.... ........++..+...++|+..++-.
T Consensus 94 ~~~~-~--~~aD~Vi~avp----~~~~~~~~v~~~l~~~~~~~~iv~s~ 135 (302)
T 1f0y_A 94 AASV-V--HSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFASN 135 (302)
T ss_dssp HHHH-T--TSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred HHHh-h--cCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence 3211 1 46799986432 11123467778888888888766533
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.27 E-value=3.3 Score=36.63 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCchHHHHHH----HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C-----
Q 016992 122 KDKVVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (379)
.+++||-.|++. .++..++ +.|+ +|++++.++ .++...+.+...+...++.++.+|+.+... .
T Consensus 31 ~~k~vlVTGasg-gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 31 RDRLALVTGASG-GIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 577899998655 4444444 4565 899999988 766666666666655568889999876431 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|+||...
T Consensus 109 ~g~iD~vi~~A 119 (279)
T 1xg5_A 109 HSGVDICINNA 119 (279)
T ss_dssp HCCCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 13689999753
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=4.4 Score=36.18 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=59.8
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---------CCC--------CcEEEEEcceeec
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFS--------NVITVLKGKIEEI 183 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~---------~~~--------~~i~~~~~d~~~~ 183 (379)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.+... ++. .++.+ ..|..+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence 4788899886 244555666676 999999999 888776653221 110 11232 2233222
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
-...|+|+.... ........++..+...++|+..++-.+
T Consensus 83 ---~~~aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~il~s~t 121 (283)
T 4e12_A 83 ---VKDADLVIEAVP----ESLDLKRDIYTKLGELAPAKTIFATNS 121 (283)
T ss_dssp ---TTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---hccCCEEEEecc----CcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 146899986432 222356678888888899988776333
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=84.02 E-value=3 Score=38.05 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..+++||-.|++.|+ ++..+++.|+ +|++++.+. .++.+.+.+...+...++.++.+|+.+... .
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 467899999987652 3344445576 899999998 777776666665543469999999876430 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|++|.+.
T Consensus 85 ~g~id~lv~nA 95 (319)
T 3ioy_A 85 FGPVSILCNNA 95 (319)
T ss_dssp TCCEEEEEECC
T ss_pred CCCCCEEEECC
Confidence 25789999864
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=83.75 E-value=4.1 Score=36.20 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCCCchHHHHH----HHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C---
Q 016992 121 FKDKVVLDVGAGTGILSLFC----AKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~l----a~~g~~~v~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (379)
..+++||-.|++.| ++..+ ++.|+ +|++++.+. ..+.+.+.+...+ .++.++.+|+.+... .
T Consensus 27 ~~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 27 LEGKVALVTGAGRG-IGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHH
Confidence 35678998887654 44444 44566 899988764 3444444455444 358889988865420 0
Q ss_pred --CCceeEEEEec
Q 016992 187 --VTKVDIIISEW 197 (379)
Q Consensus 187 --~~~~D~Iv~~~ 197 (379)
.+.+|++|.+.
T Consensus 103 ~~~g~iD~lv~~A 115 (283)
T 1g0o_A 103 KIFGKLDIVCSNS 115 (283)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 14689999864
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=83.56 E-value=4.7 Score=38.96 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=61.1
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-H-HHHHHHHHH---HcC-CC--------CcEEEEEcceeeccCCC
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-M-ANMAKQIVE---ANG-FS--------NVITVLKGKIEEIELPV 187 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~-~~~a~~~~~---~~~-~~--------~~i~~~~~d~~~~~~~~ 187 (379)
++|.-||+|+ +.++..+++.|. .|+.+|.++ . ....++++. ..| ++ .++++. .|... +
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl~a--l-- 128 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDFHK--L-- 128 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCGGG--C--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCHHH--H--
Confidence 5899999997 366677777776 999999987 3 333322222 222 11 235443 23332 2
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
...|+||...+ ........++..+...++|+.+++-.+.+
T Consensus 129 ~~aDlVIeAVp----e~~~vk~~v~~~l~~~~~~~aIlasnTSs 168 (460)
T 3k6j_A 129 SNCDLIVESVI----EDMKLKKELFANLENICKSTCIFGTNTSS 168 (460)
T ss_dssp TTCSEEEECCC----SCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred ccCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCCEEEecCCC
Confidence 56899996432 22234567888899999999888754444
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=83.43 E-value=3.1 Score=36.48 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C-----
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (379)
..++++|-.|++.| .++..+++.|+ +|+.+|.+. .++...+.+...+ .++.++.+|+.+... .
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999998765 23444555676 899999988 7777666666655 458999999876431 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|++|.+.
T Consensus 87 ~g~id~lv~nA 97 (256)
T 3gaf_A 87 FGKITVLVNNA 97 (256)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14789999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.28 E-value=0.71 Score=43.34 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
.++++|+-+|+| .++..+++ .|+ +|+++|.++ .++.+++. .+. .+.....+..++...-..+|+|+.
T Consensus 164 l~~~~V~ViGaG--~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~---~g~--~~~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 164 VAPASVVILGGG--TVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDV---FGG--RVITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp BCCCEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TTT--SEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh---cCc--eEEEecCCHHHHHHHHhCCCEEEE
Confidence 356899999985 44444333 576 999999998 76665432 232 233222222222100146899986
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
... .........+.+...+.+++||.++-
T Consensus 236 ~~g---~~~~~~~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 236 AVL---VPGAKAPKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp CCC----------CCSCHHHHTTSCTTCEEEE
T ss_pred CCC---CCccccchhHHHHHHHhhcCCCEEEE
Confidence 431 11000001123455677899998873
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=83.17 E-value=3.4 Score=36.25 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCCchHHHHH----HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C---
Q 016992 120 LFKDKVVLDVGAGTGILSLFC----AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~l----a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (379)
...+++||-.|++.| ++..+ ++.|+ +|+.++.+. .++...+.+...+ .++.++.+|+.+... .
T Consensus 26 ~l~~k~vlITGas~g-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 26 SLSGQVAVVTGASRG-IGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp TTTTCEEEESSTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHH
Confidence 356789999987654 44444 44576 899999998 7777766666655 468999999876431 0
Q ss_pred --CCceeEEEEec
Q 016992 187 --VTKVDIIISEW 197 (379)
Q Consensus 187 --~~~~D~Iv~~~ 197 (379)
.+++|++|...
T Consensus 102 ~~~g~id~lv~~A 114 (262)
T 3rkr_A 102 AAHGRCDVLVNNA 114 (262)
T ss_dssp HHHSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 14689999864
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.10 E-value=3.6 Score=37.08 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C-----
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (379)
..+++||-.|++.| .++..+++.|+ +|++++.+. .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 56889999998865 23444455576 899999998 7777766666655 358999999876431 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|++|.+.
T Consensus 106 ~g~id~lvnnA 116 (301)
T 3tjr_A 106 LGGVDVVFSNA 116 (301)
T ss_dssp HSSCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 14789999864
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=82.56 E-value=4.3 Score=38.24 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~--------g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
..-.|+|+|+|+|.++..+.+. ...+++.||+|+ ..+.-++.+... ++|.+.. ++.+++ ...-+
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~~-~l~~lp---~~~~~ 152 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWHD-SFEDVP---EGPAV 152 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEES-SGGGSC---CSSEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEeC-ChhhcC---CCCeE
Confidence 3447999999999998877652 124899999999 666444444322 2576653 344443 12456
Q ss_pred EEEe
Q 016992 193 IISE 196 (379)
Q Consensus 193 Iv~~ 196 (379)
|+++
T Consensus 153 viAN 156 (387)
T 1zkd_A 153 ILAN 156 (387)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6664
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.37 E-value=3.5 Score=36.49 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------CC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (379)
.++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... ..
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999888765 23344455576 899999998 7777766666655 468888899876431 01
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+.+|++|.+.
T Consensus 80 g~iD~lVnnA 89 (264)
T 3tfo_A 80 GRIDVLVNNA 89 (264)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789999864
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=82.35 E-value=0.37 Score=45.41 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~ 162 (379)
++.+|+-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 678999999985 444444444 587 899999998 7777654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.21 E-value=3.1 Score=37.19 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.++++||-.|++.| .++..+++.|+ +|+.++.+. .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999998765 23344455576 999999988 7666655554433 468899999876420 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|++|.+.
T Consensus 103 ~g~iD~lVnnA 113 (283)
T 3v8b_A 103 FGHLDIVVANA 113 (283)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 24789999864
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.04 E-value=2.3 Score=39.52 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=34.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-c-CCCEEEEEecHH-HHHHHHH
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~ 162 (379)
....+|.+||-+|+|. |.++..+|+ . |+ +|+++|.++ .++.+++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~ 229 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAER 229 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH
Confidence 4567899999999863 566667777 5 76 899999998 8877754
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.87 E-value=0.46 Score=45.18 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~ 162 (379)
++.+|+-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 578999999985 444444444 577 899999999 7777654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.53 E-value=3.9 Score=35.86 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCCCEEEEEcC-CCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGA-GTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGc-G~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
..+++||-.|+ |.| .++..+++.|+ +|+.++.+. .++.+.+.+...+- .++.++.+|+.+...
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHH
Confidence 45789999998 565 34555566676 899999988 77666666654432 469999999876431
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+++|++|.+.
T Consensus 98 ~~g~id~li~~A 109 (266)
T 3o38_A 98 KAGRLDVLVNNA 109 (266)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCcEEEECC
Confidence 014789999864
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.29 E-value=4.2 Score=35.15 Aligned_cols=73 Identities=27% Similarity=0.287 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CCC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 187 (379)
.+++||-.|++.| .++..+++.|+ +|++++.++ .++...+.+...+ .++.++.+|+.+.. ...
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5678999887655 23444445576 899999998 7777776676665 35899999987643 012
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+++|++|...
T Consensus 81 ~~id~li~~A 90 (247)
T 3lyl_A 81 LAIDILVNNA 90 (247)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 5689999864
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.93 E-value=6 Score=34.85 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=50.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHH----HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---------
Q 016992 120 LFKDKVVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (379)
...+++||-.|++. .++..++ +.|. +|++++.++ .++...+.+...+ .++.++.+|+.+...
T Consensus 28 ~l~~k~vlITGasg-gIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 103 (272)
T 1yb1_A 28 SVTGEIVLITGAGH-GIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVK 103 (272)
T ss_dssp CCTTCEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHH
Confidence 35678999998765 4555444 4465 899999988 6666655565544 458999999876420
Q ss_pred -CCCceeEEEEec
Q 016992 186 -PVTKVDIIISEW 197 (379)
Q Consensus 186 -~~~~~D~Iv~~~ 197 (379)
..+.+|+||...
T Consensus 104 ~~~g~iD~li~~A 116 (272)
T 1yb1_A 104 AEIGDVSILVNNA 116 (272)
T ss_dssp HHTCCCSEEEECC
T ss_pred HHCCCCcEEEECC
Confidence 024689999864
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.88 E-value=8.8 Score=37.29 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=62.8
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCC-C--------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF-S--------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-------~~~-~--------~~i~~~~~d~~~~~ 184 (379)
++|--||+|. +.++..+++.|. .|+.+|.++ .++.+.+.+.. .|. . .++++. .|...+
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 82 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDIHAL- 82 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCGGGG-
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCHHHh-
Confidence 3677889986 355666777776 899999999 88887665432 111 0 134433 233222
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
...|+||.... ........++.++...++|+.+++-.+.++
T Consensus 83 ---~~aDlVIeAVp----e~~~vk~~v~~~l~~~~~~~~IlasntSti 123 (483)
T 3mog_A 83 ---AAADLVIEAAS----ERLEVKKALFAQLAEVCPPQTLLTTNTSSI 123 (483)
T ss_dssp ---GGCSEEEECCC----CCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred ---cCCCEEEEcCC----CcHHHHHHHHHHHHHhhccCcEEEecCCCC
Confidence 56799986432 222344678888889999998876544444
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=80.87 E-value=3.8 Score=36.38 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------CC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (379)
.++++|-.|++.| .++..+++.|+ +|++++.+. .++.+.+.+...+ .++.++.+|+.+... ..
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999997765 23444455576 899999988 7776666665544 458999999876431 01
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+++|++|.+.
T Consensus 100 g~id~lv~nA 109 (279)
T 3sju_A 100 GPIGILVNSA 109 (279)
T ss_dssp CSCCEEEECC
T ss_pred CCCcEEEECC
Confidence 4789999864
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=80.75 E-value=3.2 Score=40.36 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCCchHHHH----HHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLF----CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~----la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..|++|+-+|+| | ++.. ++..|+ +|+.+|.++ ....+.. .+. .+ .+..+. ...+|+|+.
T Consensus 263 L~GKtVvVtGaG-g-IG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~----~g~----dv--~~lee~---~~~aDvVi~ 326 (488)
T 3ond_A 263 IAGKVAVVAGYG-D-VGKGCAAALKQAGA-RVIVTEIDPICALQATM----EGL----QV--LTLEDV---VSEADIFVT 326 (488)
T ss_dssp CTTCEEEEECCS-H-HHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC----EE--CCGGGT---TTTCSEEEE
T ss_pred ccCCEEEEECCC-H-HHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----hCC----cc--CCHHHH---HHhcCEEEe
Confidence 579999999988 3 3333 334577 999999988 5544432 221 11 233222 256898885
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. + .. .. +-....+.+++|+.++
T Consensus 327 at-G--~~--~v---l~~e~l~~mk~gaiVv 349 (488)
T 3ond_A 327 TT-G--NK--DI---IMLDHMKKMKNNAIVC 349 (488)
T ss_dssp CS-S--CS--CS---BCHHHHTTSCTTEEEE
T ss_pred CC-C--Ch--hh---hhHHHHHhcCCCeEEE
Confidence 32 1 10 11 1122346789999877
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=80.73 E-value=12 Score=28.60 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHH----HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEE
Q 016992 123 DKVVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDII 193 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~I 193 (379)
+++|+-+|+| .++..++ +.|. +|+++|.++ .++.+++ ..+ +.++.+|..+.. .....+|+|
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~---~~~----~~~~~~d~~~~~~l~~~~~~~~d~v 73 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASA---EID----ALVINGDCTKIKTLEDAGIEDADMY 73 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HCS----SEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH---hcC----cEEEEcCCCCHHHHHHcCcccCCEE
Confidence 4688998875 4444443 3454 899999988 6654432 222 456667654321 112568999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+..... ......+....+.+.++ .++
T Consensus 74 i~~~~~------~~~~~~~~~~~~~~~~~-~ii 99 (140)
T 1lss_A 74 IAVTGK------EEVNLMSSLLAKSYGIN-KTI 99 (140)
T ss_dssp EECCSC------HHHHHHHHHHHHHTTCC-CEE
T ss_pred EEeeCC------chHHHHHHHHHHHcCCC-EEE
Confidence 864311 12223333444556665 444
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=80.61 E-value=6.1 Score=34.72 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCCceeE
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVDI 192 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~ 192 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.+.. +.+.+.+...+ .++.++.+|+.+.. +..+++|+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~-~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP-DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH-HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 57899999998887 34555666677 8999998641 12223344555 45888999987643 22467999
Q ss_pred EEEec
Q 016992 193 IISEW 197 (379)
Q Consensus 193 Iv~~~ 197 (379)
+|.+.
T Consensus 83 LVNNA 87 (247)
T 4hp8_A 83 LVNNA 87 (247)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99864
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.52 E-value=6.4 Score=35.91 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=40.0
Q ss_pred CCCEEEEEcCCCchHHHH----HHHcCCCEEEEEe-cHH-HHHHHHHHHH-HcCCCCcEEEEEcceeecc
Q 016992 122 KDKVVLDVGAGTGILSLF----CAKAGAAHVYAVE-CSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~----la~~g~~~v~~vD-~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~ 184 (379)
.+++||-.|++.| ++.. +++.|+ +|+.++ .++ .++.+.+.+. ..+ .++.++.+|+.+..
T Consensus 45 ~~k~~lVTGas~G-IG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~d~~ 110 (328)
T 2qhx_A 45 TVPVALVTGAAKR-LGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 110 (328)
T ss_dssp CCCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcC--CeEEEEEeeCCCch
Confidence 5678998887654 4444 444576 899999 877 6665555554 333 45889999987654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.12 E-value=4 Score=35.30 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=48.5
Q ss_pred CCCCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCC
Q 016992 119 FLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 188 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 188 (379)
...++++||-.|++.| .++..+++.|+ +|+.++.+. .++...+.+. .++.++.+|+.+.. ...+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCS
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcC
Confidence 3467889999988765 23344445575 899999988 6665544332 45888888886542 1124
Q ss_pred ceeEEEEec
Q 016992 189 KVDIIISEW 197 (379)
Q Consensus 189 ~~D~Iv~~~ 197 (379)
.+|++|...
T Consensus 84 ~id~li~~A 92 (249)
T 3f9i_A 84 NLDILVCNA 92 (249)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 789999764
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=80.08 E-value=5.5 Score=34.95 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-cCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~---------- 185 (379)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+.. .+- .++.++.+|+.+...
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999998776 33444555676 899999988 77666655554 332 348899999876431
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 84 ~~g~id~lvnnA 95 (265)
T 3lf2_A 84 TLGCASILVNNA 95 (265)
T ss_dssp HHCSCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 014789999864
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.03 E-value=4.8 Score=35.06 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (379)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+....-. .++.++.+|+.+...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 45789999998765 33444555677 899999988 776666655544211 457889999876431
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+++|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 014789999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 379 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-104 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 4e-94 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-90 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 9e-10 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 3e-09 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-08 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 7e-08 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 6e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 2e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-05 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 9e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-04 | |
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 4e-04 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 4e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.004 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 308 bits (789), Expect = e-104
Identities = 172/316 (54%), Positives = 220/316 (69%), Gaps = 26/316 (8%)
Query: 90 SYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVY 149
SY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 150 AVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLN 209
+ECS +++ A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLN
Sbjct: 61 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 210 TVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEP 269
TVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EP
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEP 180
Query: 270 LVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT--------------------------C 303
LVD VD Q+VTN L+K +DI + D +FT C
Sbjct: 181 LVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRC 240
Query: 304 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 363
HK GFST P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D +
Sbjct: 241 HKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDF 300
Query: 364 QGRHSAISRIQYYKMR 379
+G+ +S Y+MR
Sbjct: 301 KGQLCELSCSTDYRMR 316
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 282 bits (723), Expect = 4e-94
Identities = 154/327 (47%), Positives = 207/327 (63%), Gaps = 33/327 (10%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
DYYFDSY H+GIHEEML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
A HV V+ S + MAK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQ 264
E+M++TVLYARD +LV+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL 180
Query: 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------------- 302
+ EP+VDTV++N + T L D++ + D +F
Sbjct: 181 VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240
Query: 303 ------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 356
+ + FSTGP + THWKQT+ Y D L G+ I G L +PN+KN RD++
Sbjct: 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLN 300
Query: 357 IMLKYSLQ-----GRHSAISRIQYYKM 378
I + Y + G + Y M
Sbjct: 301 IKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 272 bits (695), Expect = 4e-90
Identities = 140/306 (45%), Positives = 190/306 (62%), Gaps = 27/306 (8%)
Query: 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH 147
F SY H+GIHEEMLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 148 VYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENM 207
V V+ S++ A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFLLFE+M
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120
Query: 208 LNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMM 267
L++VLYA++K+L G V PD ++ L A+ D D+I FW++VYGF MSC+KK +
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIP 180
Query: 268 EPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------------------------- 302
E +V+ +D +++ +K +D D F+
Sbjct: 181 EAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFE 240
Query: 303 --CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 360
CH + FSTGP+S THWKQTV LE ++ GEA+ G +TV NKK+PR + + L
Sbjct: 241 KNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLT 300
Query: 361 YSLQGR 366
+ +
Sbjct: 301 LNNSTQ 306
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 56.5 bits (135), Expect = 9e-10
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 7/146 (4%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175
+ + VLD+G G G L +AG Y V+ ++ N A+ +
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 176 LKGKI--EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI---VLPDKA 230
++L I Y L+ + L G +P +
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138
Query: 231 SLYLTAIEDAEYKDDKIEFWNNVYGF 256
+ L + +D +
Sbjct: 139 VI-LERYKQGRMSNDFYKIELEKMED 163
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.8 bits (131), Expect = 3e-09
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K D++V+D+ AG G LSL A G A V A+E + + N + ++
Sbjct: 103 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162
Query: 177 KGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTA 236
+ D I+ MGY + + L D I+ + T
Sbjct: 163 NMDNRDFP-GENIADRIL---MGYVVRTHEFIPKAL----SIAKDGAIIH-----YHNTV 209
Query: 237 IEDAEYKD--DKIEFWNNVYGFDMSCIKK 263
E ++ + + YG+D+ + +
Sbjct: 210 PEKLMPREPFETFKRITKEYGYDVEKLNE 238
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 52.1 bits (124), Expect = 1e-08
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 1/129 (0%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
K+ V +DVG GTG ++L A + + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
E + +DI + G L + ++ I+L + + + D
Sbjct: 91 APEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL-ETKFEAMECLRD 149
Query: 240 AEYKDDKIE 248
+ + E
Sbjct: 150 LGFDVNITE 158
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 49.1 bits (116), Expect = 7e-08
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL--KG 178
F VLD+ AG+G L++ G + VE ++ A Q + L
Sbjct: 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME 72
Query: 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL--------PDKA 230
I+ + D++ + + + A L + +V+ K
Sbjct: 73 AERAIDCLTGRFDLVFLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCETDKTVLLPKE 130
Query: 231 SLYLTAIEDAEYKDDKIEFWNN 252
L ++ Y K+ + N
Sbjct: 131 IATLGIWKEKIYGISKVTVYVN 152
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 47.7 bits (112), Expect = 6e-07
Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 11/179 (6%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ--NKFLFKDKVVLDVGAGTGILSLFCAKAG 144
++ ++H I++++++ V K + + I + + LD+ GTG L+
Sbjct: 2 CYNKFAH--IYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF 59
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
+M + A+ + G + I + + I +++
Sbjct: 60 KNTWAVDLSQEMLSEAENKFRSQGLKPRL--ACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 205 ENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 258
+ L A L + G+ + K S L + D+ +W N + D+
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDL 176
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 84 ADYYFDSYSHFGIHEEMLKDV-VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
D Y D + + + + D RT Y+ + VLDV GTG+ S+ +
Sbjct: 18 PDQYADGEAAR-VWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE 76
Query: 143 AGAAHVYAVECSQMANMAKQIVEANGFSNVI 173
G + +M A +
Sbjct: 77 EGFSVTSVDASDKMLKYALKERWNRRKEPAF 107
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.9 bits (102), Expect = 1e-05
Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 5/170 (2%)
Query: 87 YFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
+ + + I+ ++ V + I++ + + VLD+ GTGI +L A+
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-R 62
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
V ++ + + + + + D + +
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFL--QGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVY 254
E L + + L G+ + D + + +++ V
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 8/133 (6%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA 143
Y +Y F ++++ + ++D+G+G I + A
Sbjct: 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACD 72
Query: 144 GAAHVYAVECS-QMANMAKQIVEANGFSN-------VITVLKGKIEEIELPVTKVDIIIS 195
+ + + + ++ ++ + L+G E K+ +
Sbjct: 73 SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVK 132
Query: 196 EWMGYFLLFENML 208
+ + N L
Sbjct: 133 RVLKCDVHLGNPL 145
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
VLD+GAG G +L + V+ ++ + +G E +
Sbjct: 20 VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
P DII Y + + + + L DG L
Sbjct: 79 PDDSFDII---TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.9 bits (95), Expect = 9e-05
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSN 171
+ V+D G G GIL+ GA V A + A AK+ F
Sbjct: 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 98
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
+ +LD+G+G+G + A+ ++ S + + +
Sbjct: 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 90
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ K D+ +G + + L GI+L
Sbjct: 91 DAAGYVANEKCDVAAC--VGATWIAGGFAGAEELLA-QSLKPGGIML 134
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
F+ +L++G+ G + + + VE S+ A Q +G +
Sbjct: 18 FFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITY-------I 69
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG---IVLPDKASLY 233
E ++ + + D WL + G +V P+ ++
Sbjct: 70 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 126
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
L ++ VLDV G G ++ A V A + ++ + + ++G
Sbjct: 13 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD 71
Query: 180 IEEIELPVTKVDIIISEWM---------------------GYFLLFENMLNT-----VLY 213
E++ + I+ G LL +N V Y
Sbjct: 72 AEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFY 131
Query: 214 ARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
+ D K S +L +E+A ++ +++ ++ + F+
Sbjct: 132 NYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFE 175
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 39.6 bits (92), Expect = 4e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNV 172
+ K+VLD + TGI + A A V+ + S+ A + K+ V N +
Sbjct: 43 ILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 97
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 38.8 bits (89), Expect = 4e-04
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
+Y+ + Y H ++L + LD+G G G SL+ A G
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAK--------------VVAPGRTLDLGCGNGRNSLYLAANG 52
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
+ ++I A G N+ T L + D I+S + FL
Sbjct: 53 YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT--LTFDGEYDFILSTVVMMFLEA 110
Query: 205 ENMLNTVLYARDKWLVDDGIVL 226
+ + ++ + G L
Sbjct: 111 QT-IPGLIANMQRCTKPGGYNL 131
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (91), Expect = 5e-04
Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177
L K +D+G+G G + A G A + E +++ E + ++
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273
Query: 178 GKIEEIELPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT 235
E L + + ++ +N L+ D + I+ K +
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVIL---VNNFLFDEDLNKKVEKILQTAKVGCKII 330
Query: 236 AIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVD 272
+++ +I F+N F+ +++ + E V
Sbjct: 331 SLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVS 367
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 38.1 bits (88), Expect = 0.001
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
L +L+VG G+G +S + A G + VE A + +
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 142
Query: 177 KGKI 180
+ I
Sbjct: 143 RSDI 146
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176
+ VL+ G+G+G +SLF +KA V + E + ++AK+ + S ++ +
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155
Query: 177 KGKIEEIELPVTKVD 191
+ + ++ +
Sbjct: 156 EEWPDNVDFIHKDIS 170
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.8 bits (84), Expect = 0.003
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 102 KDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
+D+ Y + + + + K ++D G G G L L +
Sbjct: 6 RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 65
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+ E + K DI I FLL T+L +
Sbjct: 66 AEARELFRLLPYDSEFLEGDATEIELNDKYDIAIC---HAFLLHMTTPETMLQKMIHSVK 122
Query: 221 DDGIVL---PDKASLYLTAIEDAEYKDDKIEFW 250
G ++ P S + + D E + + I+
Sbjct: 123 KGGKIICFEPHWISNMASYLLDGEKQSEFIQLG 155
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 36.2 bits (83), Expect = 0.004
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 179
+D +L +GA G A VYA+E ++ I K
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+E V KVD + + N ++ +L G +
Sbjct: 134 PQEYANIVEKVD-----VIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 35.8 bits (82), Expect = 0.004
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVE-CSQMANMAKQIVEANGFSNVIT 174
L D+ VL +GA +G A +YAVE ++ ++V +
Sbjct: 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLL 110
Query: 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
K + V KVD+I + + +N + + + +L + G V+
Sbjct: 111 FDASKPWKYSGIVEKVDLIYQD-----IAQKNQIEILKANAEFFLKEKGEVV 157
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 379 | |||
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.8 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.75 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.74 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.73 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.71 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.69 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.68 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.68 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.67 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.65 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.65 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.62 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.62 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.6 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.6 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.59 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.59 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.59 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.58 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.56 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.54 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.54 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.54 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.53 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.53 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.53 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.53 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.51 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.5 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.49 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.46 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.46 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.46 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.45 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.45 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.44 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.44 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.43 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.42 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.41 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.41 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.4 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.4 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.39 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.38 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.37 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.35 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.34 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.33 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.33 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.33 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.21 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.2 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.18 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.17 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.16 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.11 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.04 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.99 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.92 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.86 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.85 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.82 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.76 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.73 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.7 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.69 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.67 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.64 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.59 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.57 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.56 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.56 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.53 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.53 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.52 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.44 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.38 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.34 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.24 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.17 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.08 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.06 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.77 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.69 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.55 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.48 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.43 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.41 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.41 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.24 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.22 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.2 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.14 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.98 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.97 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.91 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.85 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.83 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.53 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.52 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.3 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.29 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.17 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.11 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.94 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.86 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.72 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.65 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.28 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.24 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.2 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.05 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.02 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.95 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.9 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.86 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.76 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.6 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.52 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.49 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.12 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.04 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.79 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.61 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.29 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.5 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.36 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.3 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.03 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.75 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 91.51 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.1 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.97 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.91 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.9 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.7 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.58 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.42 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.95 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 89.85 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.71 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.43 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.13 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.06 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.92 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 88.7 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.62 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.26 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.84 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 87.63 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.52 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 87.45 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.1 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.1 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 86.71 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 86.15 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.77 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 85.71 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 85.49 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.29 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.97 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 83.9 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.16 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 82.98 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 82.51 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.4 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.25 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 82.22 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 82.03 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 81.11 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 80.96 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.27 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.1e-52 Score=390.62 Aligned_cols=290 Identities=59% Similarity=1.006 Sum_probs=270.0
Q ss_pred ccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC
Q 016992 90 SYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF 169 (379)
Q Consensus 90 ~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~ 169 (379)
+|++++.|..||+|..|+..|.++|.++....+|++|||||||+|.+++.+|++|+++|+|+|.++++..+++++..+++
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~ 80 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL 80 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC
Confidence 46678899999999999999999998777778999999999999999999999999999999999944777888999999
Q ss_pred CCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeeccccccccccc
Q 016992 170 SNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEF 249 (379)
Q Consensus 170 ~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~ 249 (379)
.++|+++++|+.+++++.++||+|+++++++++.++..++.++.++.++|||||.++|+.+++|++++++..++.....+
T Consensus 81 ~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~~~~~~~~~ 160 (316)
T d1oria_ 81 DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHW 160 (316)
T ss_dssp TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTTT
T ss_pred ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHHHHhhhccc
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999988888899
Q ss_pred ccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe--------------------------c
Q 016992 250 WNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT--------------------------C 303 (379)
Q Consensus 250 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~--------------------------~ 303 (379)
|.+.+|++++.+......+|.+....+..++++|+.+.++||.+...+++.++ +
T Consensus 161 ~~~~~g~d~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~ 240 (316)
T d1oria_ 161 WENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRC 240 (316)
T ss_dssp TTCBTTBCCHHHHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTS
T ss_pred ccccccccchhhhhhhccccEEEEecCceEeeCCEEeEEEcCCCCcccCccEEEEEEEeecCCceEEEEEEEEEEEeeCC
Confidence 99999999999999988899999999999999999999999998876665322 3
Q ss_pred CCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceeeeeeceEEeeeC
Q 016992 304 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379 (379)
Q Consensus 304 ~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
++++.|||+|..+.|||+|++|+|++|+.|++|+.|.+++++.+++.++|+++|+++|++.|+..+...++.|+||
T Consensus 241 ~~~v~lST~P~~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~~ 316 (316)
T d1oria_ 241 HKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 316 (316)
T ss_dssp SSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCCeEEECCCCcCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEecCeeeccccceeeecC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999997
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.1e-51 Score=384.17 Aligned_cols=294 Identities=52% Similarity=0.918 Sum_probs=270.6
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~ 164 (379)
+.||+.|.++..|..|++|..|+..|.++|.++....+|++|||||||+|.+++.+|++|+++|+|+|.++++..|++++
T Consensus 1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~ 80 (328)
T d1g6q1_ 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELV 80 (328)
T ss_dssp CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHH
T ss_pred CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 46999999999999999999999999999988777789999999999999999999999999999999988778999999
Q ss_pred HHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccccc
Q 016992 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (379)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (379)
+.+++.++++++++|+.++++++++||+|+++++++++.++..+..++.++.++|||||.++|+.+++|++++++..++.
T Consensus 81 ~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~ 160 (328)
T d1g6q1_ 81 ELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKD 160 (328)
T ss_dssp HHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe----------------------
Q 016992 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------------- 302 (379)
Q Consensus 245 ~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~---------------------- 302 (379)
....+|...+|++++.+......+|++..+.+..+++.|..+..++|......++.+.
T Consensus 161 ~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~ 240 (328)
T d1g6q1_ 161 EKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240 (328)
T ss_dssp HHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEE
T ss_pred HhccccccccccccchhhhhhccCcEEEEecCceeecCceeEEEecccccchhhcceeeeEEEEecCCcEEEEEEEEEEE
Confidence 8888999999999999999999999999999999999999999999998887765432
Q ss_pred -c-----CCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEccee-----eeee
Q 016992 303 -C-----HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH-----SAIS 371 (379)
Q Consensus 303 -~-----~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 371 (379)
. ..++.|||+|..+.|||+|++|+|++|+.|++||+|++++++.+++.+.|+++|+++|.++..+ .+.-
T Consensus 241 ~l~~~~~~~~i~lST~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~ 320 (328)
T d1g6q1_ 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRK 320 (328)
T ss_dssp ECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEE
T ss_pred EccCCCCCCceEEeCCCCCCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEecCCCCccccee
Confidence 1 2358999999999999999999999999999999999999999999999999999999866444 4456
Q ss_pred ceEEeee
Q 016992 372 RIQYYKM 378 (379)
Q Consensus 372 ~~~~~~~ 378 (379)
++++|-|
T Consensus 321 ~~~~~~~ 327 (328)
T d1g6q1_ 321 NEGSYLM 327 (328)
T ss_dssp EEEEEEE
T ss_pred ccceEec
Confidence 6678877
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.2e-49 Score=367.13 Aligned_cols=279 Identities=50% Similarity=0.881 Sum_probs=256.5
Q ss_pred hhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 016992 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (379)
Q Consensus 88 ~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~ 166 (379)
|+.|+.+..|..|++|..|+..|.++|.++....+|++|||||||+|.+++.+|++|+++|+|+|.|+ +. .+++.+..
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~ 79 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRL 79 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHH
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHH
Confidence 67888999999999999999999999998888889999999999999999999999999999999999 65 56777888
Q ss_pred cCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccccccc
Q 016992 167 NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 246 (379)
Q Consensus 167 ~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~ 246 (379)
+++.++|.++++|+.++.++.++||+|+++++++++.++..++.++.++.++|||||.++|+.+++|++++++..++...
T Consensus 80 ~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~~~~~~ 159 (311)
T d2fyta1 80 NKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADR 159 (311)
T ss_dssp TTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHH
T ss_pred hCCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHHHHHhh
Confidence 88888999999999999888889999999999999999999999999999999999999999999999999999888888
Q ss_pred cccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe------------------------
Q 016992 247 IEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------------------------ 302 (379)
Q Consensus 247 ~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~------------------------ 302 (379)
..+|.+.+|++++.+.+....++++...++..++++|+.+.++||.+....++.++
T Consensus 160 ~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~Wfd~~f 239 (311)
T d2fyta1 160 IAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYF 239 (311)
T ss_dssp TGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEE
T ss_pred hccccccccccccchhhccccccEEEecChhheecCCEeEEEeccCcCccccccEEEEEEeeecCCcceEEEEEEEEEEE
Confidence 88999999999999999888899999999999999999999999998776654321
Q ss_pred ---cCCcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEccee
Q 016992 303 ---CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH 367 (379)
Q Consensus 303 ---~~~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (379)
+++++.+||+|..+.+||+|++|+|++|++|++||+|++++++.+++.+.|+++|+++++..+..
T Consensus 240 ~~~~~~~~~lST~P~~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 307 (311)
T d2fyta1 240 EKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQT 307 (311)
T ss_dssp CTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEETTEEEE
T ss_pred ECCCCCceEEeCCCCcCCCccccEEEEeCCceEeCCCCEEEEEEEEEECCCCCEEEEEEEEEeCCcEE
Confidence 35789999999999999999999999999999999999999999999999999998887655443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=1e-19 Score=161.59 Aligned_cols=111 Identities=20% Similarity=0.302 Sum_probs=98.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
..+.+...+++|.+|||||||+|.++..+++.+ .+|+|||+|+ |++.|++++..+++ +++.++++|++++++++++|
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccc-cccccccccccccccccccc
Confidence 346666788999999999999999999999986 4999999999 99999999999988 45999999999999988999
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+|..+ +.+..++..+++++.++|||||+++.
T Consensus 84 D~v~~~~~---l~~~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 84 DIITCRYA---AHHFSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp EEEEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ceeeeece---eecccCHHHHHHHHHHeeCCCcEEEE
Confidence 99998654 44447789999999999999999875
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=3.7e-19 Score=159.32 Aligned_cols=119 Identities=21% Similarity=0.318 Sum_probs=98.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+...+.......++++|||||||+|.++..+++.|+ +|+|||+|+ |++.|++++...++ +++++++|+++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~- 103 (251)
T d1wzna1 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK- 103 (251)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhcccc-
Confidence 3444455445566778999999999999999999986 999999999 99999999998876 499999999999987
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
++||+|+|........+..++..+|+++.++|||||+++.+...
T Consensus 104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 79999998532233344567789999999999999999865433
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=3.9e-19 Score=157.17 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=95.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.+...+.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...++ ++++++++|++++++++++||+
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD~ 84 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHI 84 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEE
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc-cccccccccccccccccccccc
Confidence 33446678999999999999999999999875 999999999 99999999999988 4699999999999988899999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|..+ +.+..++..+++++.++|||||+++.
T Consensus 85 v~~~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i 116 (231)
T d1vl5a_ 85 VTCRIA---AHHFPNPASFVSEAYRVLKKGGQLLL 116 (231)
T ss_dssp EEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccc---ccccCCHHHHHHHHHHhcCCCcEEEE
Confidence 998654 44447788999999999999999885
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.8e-19 Score=157.84 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=98.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
...+.....+.+|.+|||||||+|.++..+++....+|+|||+|+ |++.|++++...|++++|+++++|+.++. ++++
T Consensus 22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~~~ 100 (245)
T d1nkva_ 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEK 100 (245)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSSC
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-ccCc
Confidence 344666678899999999999999999999885335999999999 99999999999999999999999999984 5589
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
||+|+|..+.+ +..++..++.++.++|||||++++.
T Consensus 101 fD~v~~~~~~~---~~~d~~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 101 CDVAACVGATW---IAGGFAGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp EEEEEEESCGG---GTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred eeEEEEEehhh---ccCCHHHHHHHHHHHcCcCcEEEEE
Confidence 99999875533 3467789999999999999999864
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.78 E-value=7.1e-19 Score=160.61 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+.+.+.+.....+.++.+|||||||+|.++..+++....+|+|||+|+ |++.|+++....|+.++++++++|+++++++
T Consensus 53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE 132 (282)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccc
Confidence 345556666677889999999999999999999985234999999999 9999999999999998999999999999988
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++||+|++..+ +.|.+++..++.++.++|||||+++.
T Consensus 133 ~~sfD~V~~~~~---l~h~~d~~~~l~~~~~~LkpgG~l~~ 170 (282)
T d2o57a1 133 DNSYDFIWSQDA---FLHSPDKLKVFQECARVLKPRGVMAI 170 (282)
T ss_dssp TTCEEEEEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccchhhccch---hhhccCHHHHHHHHHHhcCCCcEEEE
Confidence 899999998654 34446788999999999999999884
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=4.2e-18 Score=149.59 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...+. .+.++++|+.++++++++||+|+|..+.
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--cccccccccccccccCcCceEEEEecch
Confidence 5778999999999999999999865 899999999 99999999988774 4788999999999888999999997654
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++. ..++..+++++.++|||||.++.
T Consensus 113 ~~~~-~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 113 VHFE-PLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp GGCC-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhCC-hhHHHHHHHHHHHHcCcCcEEEE
Confidence 4432 34678899999999999999874
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.74 E-value=2.8e-18 Score=153.36 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec-C
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~-~ 198 (379)
.++++|||||||+|.++..+++.|. +|+|||+|+ |++.|++++...++ +++++++|+.+++++ ++||+|+|-. .
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhccc-ccccccceeeee
Confidence 4567999999999999999999976 999999999 99999999988886 499999999999876 7999999831 2
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+++.+..++..+++++.++|||||.|+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 23455667888999999999999999985
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.73 E-value=7.6e-18 Score=144.15 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=93.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.+.....+.+|.+|||+|||+|.+++.+|+.+ .+|+|+|+++ +++.|+++++++|+.++++++++|+.+...+.+.||
T Consensus 24 ~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D 102 (186)
T d1l3ia_ 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID 102 (186)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred HHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence 35555677899999999999999999999864 5999999999 999999999999998899999999998877778999
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++.... ..+..++..+.+.|||||+++.
T Consensus 103 ~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 103 IAVVGGSG------GELQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp EEEESCCT------TCHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeCcc------ccchHHHHHHHHHhCcCCEEEE
Confidence 99986421 3456789999999999999874
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.71 E-value=3.1e-17 Score=147.11 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEe
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISE 196 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~ 196 (379)
...++++|||||||+|..+..+++.|.++|+|||+|+ |++.|++++...+...++.++++|+...++. .++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 3568899999999999999999998888999999999 9999999998888777899999999766553 5789999997
Q ss_pred cCccc-cCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.++ +..+..+..++.++.++|||||+++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~ 132 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 132 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence 65444 34556788999999999999999884
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1.6e-17 Score=147.62 Aligned_cols=99 Identities=26% Similarity=0.378 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|+++. . ..++.+|++++++++++||+|+|..
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~- 110 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALG- 110 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECS-
T ss_pred cCCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----c---cccccccccccccccccccceeeec-
Confidence 45778999999999999999999876 999999999 999998752 2 2367899999998889999999832
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+.+..++..+++++.++|||||.++.+
T Consensus 111 -~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 111 -DVLSYVENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp -SHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -chhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence 33444467889999999999999999853
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=1e-16 Score=138.36 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||||||+|..+..+++.|. +|+|||+|+ |++.|++++...+++ ++++...|+..+.++ ++||+|++..+.+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFD-GEYDFILSTVVMM 106 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCC-CCEEEEEEESCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheeccccccc-ccccEEEEeeeee
Confidence 445999999999999999999976 999999999 999999999999985 699999999988775 8999999976644
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++ .......+++++.++|+|||+++.
T Consensus 107 ~~-~~~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 107 FL-EAQTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp GS-CTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 44 335678999999999999999884
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=1.5e-16 Score=136.80 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=91.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D 191 (379)
+.+.+...++.+|||+|||+|.+++.+++.+ .+|+++|+|+ +++.|+++++.+++.+ +++++.+|+.+ .+++++||
T Consensus 44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD 121 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEE
T ss_pred HHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCce
Confidence 3444567789999999999999999998875 5999999999 9999999999999864 69999999877 45568999
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+++++.+. .......+++.+.++|||||.++
T Consensus 122 ~Ii~~~p~~~--~~~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 122 KIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp EEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcccEEe--cchhhhhHHHHHHHhcCcCcEEE
Confidence 9999876332 23446789999999999999986
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.9e-17 Score=143.56 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||||||+|.++..+++.+..+|+|||+|+ |++.|++++...+. .+++++++|+++++++.++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccc
Confidence 3456789999999999999988765567999999999 99999999888776 468999999999988789999999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+++. ...+..+++++.++|||||.++..
T Consensus 136 ~l~h~~-~~~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 136 VIGHLT-DQHLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccch-hhhhhhHHHHHHHhcCCcceEEEE
Confidence 544442 234568999999999999999853
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=9.7e-17 Score=143.25 Aligned_cols=110 Identities=23% Similarity=0.366 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+....+++... ..+|++|||+|||+|.+++.+++.|. +|+|+|+|+ |++.|+++++.+++. ++++++|+.+.
T Consensus 106 TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~- 179 (254)
T d2nxca1 106 TTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA- 179 (254)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-
T ss_pred hhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc-
Confidence 355566666643 47899999999999999999999875 899999999 999999999999985 57889998764
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.++||+|+++... ..+..++..+.+.|||||+++.
T Consensus 180 ~~~~~fD~V~ani~~------~~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 180 LPFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp GGGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhhcccc------ccHHHHHHHHHHhcCCCcEEEE
Confidence 344899999987532 4567888999999999999984
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.65 E-value=2.7e-16 Score=138.40 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..++.+|||||||+|..+..+++. +..+|+|+|+|+ |++.|+++++..+...++.+..+|+.+++. ..+|+|++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~--~~~d~i~~ 114 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI--KNASMVIL 114 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC--CSEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc--ccceeeEE
Confidence 468889999999999999999983 345999999999 999999999988877789999988877654 67899998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.++ .+..++..++++++++|||||.++.
T Consensus 115 ~~~l~~-~~~~d~~~~l~~i~~~LkpgG~li~ 145 (225)
T d1im8a_ 115 NFTLQF-LPPEDRIALLTKIYEGLNPNGVLVL 145 (225)
T ss_dssp ESCGGG-SCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccc-cChhhHHHHHHHHHHhCCCCceeec
Confidence 755443 3456788999999999999999985
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=5e-16 Score=140.92 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=96.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
.+.+...+.+.+|.+|||||||+|.++..+++. |. +|+|||+|+ +++.|++++++.++..++.+...|..+++ +
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---~ 116 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---E 116 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---C
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---c
Confidence 344666678899999999999999999999985 65 999999999 99999999999999888999988877653 7
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||.|++..+..++ +....+.+++++.++|||||+++.+
T Consensus 117 ~fD~i~si~~~eh~-~~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 117 PVDRIVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCSEEEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred chhhhhHhhHHHHh-hhhhHHHHHHHHHhccCCCceEEEE
Confidence 89999997664443 2356789999999999999999853
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1e-15 Score=139.33 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=95.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
.+.+...+.+.+|.+|||||||.|.+++.+|+ .|+ +|+||++|+ .++.|++++...|+.+++.+...|... .++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~---~~~ 125 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---FDE 125 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---CCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc---ccc
Confidence 44566677889999999999999999999887 675 999999999 999999999999999999998888653 348
Q ss_pred ceeEEEEecCccccCC------hhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||.|+|.-|..++.. ....+.+++.+.++|||||+++.+
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 8999999655433321 245789999999999999999854
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1e-15 Score=138.89 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=97.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
..+.+.+.+.+.+|.+|||||||.|.+++.+|+ .|+ +|+||++|+ .++.|+++++..|+.+++++..+|..+++
T Consensus 50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 125 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 125 (285)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence 345567778889999999999999999999888 675 999999999 99999999999999999999999988764
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++||.|++-.+..++.+ .....+++++.++|||||+++.+
T Consensus 126 ~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 68999999665444322 45678999999999999999854
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.62 E-value=9.2e-16 Score=139.54 Aligned_cols=114 Identities=20% Similarity=0.234 Sum_probs=93.0
Q ss_pred HHHHHHHhc-cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 109 SYQNVIYQN-KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 109 ~~~~~i~~~-~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.|.+.+... ....++.+|||+|||+|.++..+++. + ..+|+|+|+|+ +++.|++++...+. +++++++|+.+++
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~ 90 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE 90 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc
Confidence 344444432 24567789999999999999999884 3 35899999999 99999999988775 5999999999988
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++ ++||+|+|..+. .+..++..+++++.++|||||.++..
T Consensus 91 ~~-~~fD~v~~~~~l---~~~~d~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 91 LN-DKYDIAICHAFL---LHMTTPETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp CS-SCEEEEEEESCG---GGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc-CCceEEEEehhh---hcCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 76 689999987653 44467889999999999999998843
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.62 E-value=9e-16 Score=137.49 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=90.0
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.+.....++.+|||+|||+|.++..++..+...|++||+|+ |++.|++++... .+++++++|+.++++++++||+
T Consensus 85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEE
T ss_pred HHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccce
Confidence 333445567789999999999999987765456999999999 999999876533 4589999999999888789999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|++.++.+++. ..++..+++++.++|+|||.++.
T Consensus 162 I~~~~vl~hl~-d~d~~~~l~~~~~~LkpgG~iii 195 (254)
T d1xtpa_ 162 IVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeeccccccc-hhhhHHHHHHHHHhcCCCcEEEE
Confidence 99987655543 23466899999999999999885
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=4.5e-16 Score=133.39 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=86.2
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-----------CCcEEEEEcceeeccC
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-----------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~~ 185 (379)
+.+.+|.+|||+|||+|..+..+|+.|. +|+|+|+|+ |++.|+++++..+. ...+.++++|+.+++.
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 4568999999999999999999999987 999999999 99999998865432 1235788888877653
Q ss_pred C-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. ...||+|++..+..++ .......+++.+.++|||||.++
T Consensus 95 ~~~~~~D~i~~~~~l~~l-~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp HHHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccccceeEEEEEeeeEec-chhhhHHHHHHHHHhcCCCcEEE
Confidence 2 3679999987654443 33556789999999999999987
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.4e-15 Score=131.91 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..++ +++|||+|+ |++.|+++ ++.++++|++++++++++||+|++..+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~- 100 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTT- 100 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESC-
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccc-
Confidence 456689999999999877663 569999999 99999863 489999999999988899999998755
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..++..++.++.++|+|||.++..
T Consensus 101 --l~h~~d~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 101 --ICFVDDPERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp --GGGSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred --cccccccccchhhhhhcCCCCceEEEE
Confidence 444467889999999999999998843
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=1.7e-15 Score=135.39 Aligned_cols=105 Identities=28% Similarity=0.344 Sum_probs=91.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc--CCCCcEEEEEcceeeccCCCC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN--GFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~ 188 (379)
|.....+.||.+|||+|||+|.++..+|+. | .++|+++|+++ +++.|+++++.. +..+++.++++|+.+..++++
T Consensus 88 Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~ 167 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 167 (264)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCC
Confidence 555678899999999999999999999994 4 57999999999 999999999874 445789999999999888889
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.||.|+.+. +++..++.++.++|||||+++
T Consensus 168 ~fDaV~ldl--------p~P~~~l~~~~~~LkpGG~lv 197 (264)
T d1i9ga_ 168 SVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLM 197 (264)
T ss_dssp CEEEEEEES--------SCGGGGHHHHHHHEEEEEEEE
T ss_pred CcceEEEec--------CCHHHHHHHHHhccCCCCEEE
Confidence 999999764 445678889999999999987
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.59 E-value=1e-15 Score=134.70 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..+++.|. +|+|||+|+ +++.|+++.. ++++++++++.+++++ ++||+|++..+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~-~~fD~I~~~~v- 90 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLP-RRYDNIVLTHV- 90 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCS-SCEEEEEEESC-
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----cccccccccccccccc-cccccccccce-
Confidence 5677899999999999999998875 899999999 9999987642 4699999999998776 89999998654
Q ss_pred cccCChhhHHHHHHHHH-hcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARD-KWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~-~~LkpgG~lip 227 (379)
+.|..++..++.++. ++|+|||.++.
T Consensus 91 --leh~~d~~~~l~~i~~~~Lk~gG~l~i 117 (225)
T d2p7ia1 91 --LEHIDDPVALLKRINDDWLAEGGRLFL 117 (225)
T ss_dssp --GGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred --eEecCCHHHHHHHHHHHhcCCCceEEE
Confidence 445577888898887 79999999984
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=1.2e-15 Score=139.56 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=84.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEEEEcceeecc-
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKIEEIE- 184 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~- 184 (379)
+..++...+...++.+|||+|||+|.++..+++.|. +|+|||+|+ |++.|+++....+.. ....+...++..++
T Consensus 44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T d1xvaa_ 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 122 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence 334444444445678999999999999999999986 899999999 999999998877643 12334445543322
Q ss_pred -C-CCCceeEEEEec-CccccC----ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -L-PVTKVDIIISEW-MGYFLL----FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~-~~~~~D~Iv~~~-~~~~l~----~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ ..++||+|+|.. ...++. ...++..+++++.++|||||+|++
T Consensus 123 ~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 123 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence 1 247899999842 112222 124678899999999999999985
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.59 E-value=1.1e-15 Score=135.71 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=88.1
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.|.....+.+|.+|||+|||+|.++..+|+. +.++|+++|.++ +++.|++++++++..+++++..+|+.+. ++++.
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 3555678899999999999999999999984 457999999999 9999999999887668899999999887 44588
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||.|+.+. .++..++..+.++|||||+++.
T Consensus 155 fD~V~ld~--------p~p~~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 155 YDAVIADI--------PDPWNHVQKIASMMKPGSVATF 184 (250)
T ss_dssp EEEEEECC--------SCGGGSHHHHHHTEEEEEEEEE
T ss_pred eeeeeecC--------CchHHHHHHHHHhcCCCceEEE
Confidence 99999764 2345678899999999999984
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=3e-15 Score=138.61 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=93.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv 194 (379)
..+|++|||+|||+|.+++.++..|+++|+++|+|+ +++.|++++..||+.++++++++|+.+.. ....+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 367999999999999999999999989999999999 99999999999999888999999987642 2347899999
Q ss_pred EecCccccCCh------hhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 195 SEWMGYFLLFE------NMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 195 ~~~~~~~l~~~------~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
++++.+..... .....++....++|+|||.|+.++|+.
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99864433221 134567888889999999999765553
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.58 E-value=1.1e-15 Score=126.03 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~ 197 (379)
..+|++|||+|||+|.+++.++..|+++|++||.++ +++.++++++.+++.++++++++|+..+ ....++||+|+++|
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 357999999999999999999999999999999999 9999999999999999999999999874 33358899999997
Q ss_pred CccccCChhhHHHHHHHHH--hcccCCEEEEec
Q 016992 198 MGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (379)
+ |. .......+..+. ++|+|||.++.+
T Consensus 92 P-y~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 92 P-YA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp S-SH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred h-hc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 5 32 244455555543 679999999854
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.6e-15 Score=132.44 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~~ 197 (379)
.+|.+|||||||+|..+..+++.+..+|+|||+|+ +++.|++++...+ .++.++..++... .+++++||.|+.+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecc
Confidence 57889999999999999999997666999999999 9999999987765 4588888887654 45678999999764
Q ss_pred C--ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 M--GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~--~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ .+.+.+..+...+++++.++|||||+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 3 33445556788999999999999999874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.5e-15 Score=130.26 Aligned_cols=116 Identities=14% Similarity=-0.087 Sum_probs=91.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC----------------CCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG----------------FSN 171 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~----------------~~~ 171 (379)
.+.+.+.+.....++.+|||+|||+|..+..+|+.|. +|+|||+|+ +++.|++.....+ ...
T Consensus 32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (229)
T d2bzga1 32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG 110 (229)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence 3344454445567889999999999999999999987 999999999 9999988764321 124
Q ss_pred cEEEEEcceeecc-CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 172 VITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 172 ~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++++++|+.+++ ...+.||+|+...+.+++ +......++..+.++|||||.++
T Consensus 111 ~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 111 NISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-NPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp SEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred cEEEEEcchhhccccccCceeEEEEEEEEEec-cchhhHHHHHHHHhhcCCcceEE
Confidence 6899999998875 335789999986543333 34667899999999999999977
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.54 E-value=1.3e-14 Score=125.86 Aligned_cols=103 Identities=25% Similarity=0.226 Sum_probs=84.7
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCcee
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVD 191 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D 191 (379)
.+.+.||.+|||+|||+|..+.++++ .+.++|+|||+|+ |++.|+++++.. +++.++.+|+...... ...+|
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEE
Confidence 35678999999999999999999999 4667999999999 999999998876 3699999999876543 24566
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++ +.+......++.++.++|||||.++.
T Consensus 128 ~v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 128 LIYQD-----IAQKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp EEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEec-----ccChhhHHHHHHHHHHHhccCCeEEE
Confidence 66654 23336678899999999999999873
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=2.3e-14 Score=124.68 Aligned_cols=104 Identities=23% Similarity=0.172 Sum_probs=84.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.+.+.+|.+|||||||+|.++..+|+. | ..+|+++|+++ +++.|+++++..++ +++.++++|..+.....++|
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCE
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccccccch
Confidence 445567899999999999999999999984 4 46999999999 99999999999998 46889999998876666789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++... +.+. + +.+.+.|||||+++.
T Consensus 146 D~I~~~~~---~~~~--p----~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 146 DVIFVTVG---VDEV--P----ETWFTQLKEGGRVIV 173 (213)
T ss_dssp EEEEECSB---BSCC--C----HHHHHHEEEEEEEEE
T ss_pred hhhhhhcc---HHHh--H----HHHHHhcCCCcEEEE
Confidence 99998643 2221 1 245577999999873
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2e-14 Score=129.17 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=102.9
Q ss_pred chhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCC
Q 016992 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN 171 (379)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~ 171 (379)
+......+-++..++.+.+...... ...+.+|||+|||+|.+++.++. .+..+|+|+|+|+ +++.|++|++.+++ .
T Consensus 81 ~~v~~~VlIPRpeTE~lv~~~l~~~-~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~ 158 (274)
T d2b3ta1 81 LFVSPATLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-K 158 (274)
T ss_dssp EECCTTSCCCCTTHHHHHHHHHHHS-CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-C
T ss_pred EEEeccccccccchhhhhhhHhhhh-cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-c
Confidence 3445556777788888877665543 34567899999999999999988 5667999999999 99999999999999 4
Q ss_pred cEEEEEcceeeccCCCCceeEEEEecCccccCC-----------h------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 172 VITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 172 ~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++++|+.+. +++.+||+|+|+++ |.-.. + ..+..++....++|+|||.++.
T Consensus 159 ~v~~~~~d~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 159 NIHILQSDWFSA-LAGQQFAMIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp SEEEECCSTTGG-GTTCCEEEEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cceeeecccccc-cCCCceeEEEecch-hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 699999998764 44479999999975 43221 1 2246788889999999999985
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=7.5e-15 Score=135.46 Aligned_cols=109 Identities=23% Similarity=0.236 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----cCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~Iv~ 195 (379)
.+|++|||+|||+|.+++.+|+ |+++|+++|+|+ +++.|+++++.||+. +++++++|+.++ ....++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4789999999999999999886 456999999999 999999999999994 699999998774 233478999999
Q ss_pred ecCccccCC------hhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 196 EWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 196 ~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+++.+.... ......++..+.++|+|||.|+.++|+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 987554332 123456788889999999999976554
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.53 E-value=4.1e-14 Score=126.45 Aligned_cols=112 Identities=22% Similarity=0.241 Sum_probs=90.4
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.+.........++|||||||+|.++..+++. +..+++++|+.++++.+++++...++.++|+++.+|+.+. .+ .+||
T Consensus 71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~D 148 (253)
T d1tw3a2 71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RKAD 148 (253)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SCEE
T ss_pred HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cc-cchh
Confidence 3444456677789999999999999999984 5579999998339999999999999999999999998653 33 6799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++..+.+.+. ......+|+++++.|||||+++.
T Consensus 149 ~v~~~~vlh~~~-d~~~~~~L~~~~~~LkPGG~l~i 183 (253)
T d1tw3a2 149 AIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILI 183 (253)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred heeeccccccCC-chhhHHHHHHHHHhcCCCcEEEE
Confidence 999876544332 23456889999999999999884
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=8.6e-15 Score=131.03 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..+|.+|||+|||+|.+++.+|+.|+++|+|+|+++ +++.++++++.|++.++|+++++|+.++... ..||.|+++++
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~-~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC-CCCCEEEECCC
Confidence 468999999999999999999998878999999999 9999999999999999999999999988654 78999998765
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+. ..++....++|++||++.
T Consensus 184 ~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 184 VRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp SSG-------GGGHHHHHHHEEEEEEEE
T ss_pred Cch-------HHHHHHHHhhcCCCCEEE
Confidence 332 234556678899999885
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=1.3e-14 Score=130.12 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=90.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.|.....+.+|.+|||+|||+|.++..+|+. +.++|+++|+++ +++.|+++++..++.+++.+...|+... ++...
T Consensus 94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~~~~~ 172 (266)
T d1o54a_ 94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKD 172 (266)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCS
T ss_pred HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-ccccc
Confidence 3566678899999999999999999999984 347999999999 9999999999999988999999997554 34478
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||.|+.+. +++..++.++.++|||||+++.
T Consensus 173 ~D~V~~d~--------p~p~~~l~~~~~~LKpGG~lv~ 202 (266)
T d1o54a_ 173 VDALFLDV--------PDPWNYIDKCWEALKGGGRFAT 202 (266)
T ss_dssp EEEEEECC--------SCGGGTHHHHHHHEEEEEEEEE
T ss_pred eeeeEecC--------CCHHHHHHHHHhhcCCCCEEEE
Confidence 99998653 4566789999999999999983
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.51 E-value=2.9e-14 Score=131.18 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=92.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeecc----CCCCceeEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~D~I 193 (379)
..+|++|||++||+|.+++.++..|+.+|++||+|+ +++.|+++++.|++. ++++++++|+.+.- ...++||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 457899999999999999999998999999999999 999999999999985 57999999997642 234789999
Q ss_pred EEecCccccC------ChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 194 ISEWMGYFLL------FENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 194 v~~~~~~~l~------~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+++++.+.-. ...+...++....++|+|||.++.++|+
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9998643211 1234567888999999999999976554
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=3.2e-14 Score=128.23 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||||||+|.++..+++.+ ..+++|+|+|+ |++.|+++. .++.++++|+.++++++++||+|++..
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~ 155 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIY 155 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecC
Confidence 4567899999999999999999963 46999999999 999998753 358999999999999989999999854
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. +.+ +.++.|+|||||.++.
T Consensus 156 ~---~~~-------~~e~~rvLkpgG~l~~ 175 (268)
T d1p91a_ 156 A---PCK-------AEELARVVKPGGWVIT 175 (268)
T ss_dssp C---CCC-------HHHHHHHEEEEEEEEE
T ss_pred C---HHH-------HHHHHHHhCCCcEEEE
Confidence 3 221 4678899999999984
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=8e-14 Score=120.09 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
++..|||||||+|..+..+|+ .+...++|||++. ++..|.+++...++. ||.++++|+..+. ++++++|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccc
Confidence 455899999999999999998 4667999999999 999999999999994 6999999998875 6678999998754
Q ss_pred CccccCChh-----hHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFEN-----MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~-----~~~~~l~~~~~~LkpgG~lip 227 (379)
+........ .-+.++..+.++|||||.|+.
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i 142 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 142 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence 433221110 015789999999999999874
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=7.7e-14 Score=117.01 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee--ccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~Iv~~ 196 (379)
..+|.+|||+|||+|.+++.++..|+ +|+++|.++ +++.++++++.+++.+++....+|... .....++||+|+++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 46788999999999999999999987 899999999 999999999999997766555554321 12334789999999
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++ |.......+..++. ..+|+|||+++.
T Consensus 118 PP-Y~~~~~~~l~~l~~--~~ll~~~g~ivi 145 (171)
T d1ws6a1 118 PP-YAMDLAALFGELLA--SGLVEAGGLYVL 145 (171)
T ss_dssp CC-TTSCTTHHHHHHHH--HTCEEEEEEEEE
T ss_pred cc-cccCHHHHHHHHHH--cCCcCCCeEEEE
Confidence 75 44332333333433 368999999884
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.5e-14 Score=128.39 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=84.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc----------CCCCcEEEEEcce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN----------GFSNVITVLKGKI 180 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~----------~~~~~i~~~~~d~ 180 (379)
|...+.+.+|.+|||+|||+|.++..+|+. | .++|+++|+++ +++.|+++++.. ++.+++.++++|+
T Consensus 90 Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di 169 (324)
T d2b25a1 90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 169 (324)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence 555577899999999999999999999994 4 47999999999 999999999864 3457899999998
Q ss_pred eecc--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 181 EEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 181 ~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+.. ++...||.|+.+++ .+..++.++.++|||||+++
T Consensus 170 ~~~~~~~~~~~fD~V~LD~p--------~P~~~l~~~~~~LKpGG~lv 209 (324)
T d2b25a1 170 SGATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCA 209 (324)
T ss_dssp TCCC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEE
T ss_pred hhcccccCCCCcceEeecCc--------CHHHHHHHHHHhccCCCEEE
Confidence 8764 34578999997642 33457889999999999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.3e-14 Score=129.86 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=89.0
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-------CC-CCcEEEEEccee
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-------GF-SNVITVLKGKIE 181 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~-------~~-~~~i~~~~~d~~ 181 (379)
..+.+...+.++.+|||||||+|.+++.+|+ .|.++++|||+++ +++.|+++.+.. |+ ..+|+++++|+.
T Consensus 141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 3455557788999999999999999999988 5778999999999 999998876653 22 246999999999
Q ss_pred eccCCCC--ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 182 EIELPVT--KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 182 ~~~~~~~--~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.++.+. .+|+|+++.+ .+...+...+.++.+.|||||++|.
T Consensus 221 ~~~~~~~~~~advi~~~~~----~f~~~~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 221 SEEWRERIANTSVIFVNNF----AFGPEVDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp SHHHHHHHHHCSEEEECCT----TTCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccccccccCcceEEEEcce----ecchHHHHHHHHHHHhCCCCcEEEE
Confidence 8775432 3578886542 2336778899999999999999984
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=1e-13 Score=121.66 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=81.3
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEE
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (379)
...+.+|.+|||||||+|..+.++|+. +.+.|+|||+|+ |++.+++++... .++.++.+|..... ..+..+|++
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeE
Confidence 356789999999999999999999995 457999999999 999999887654 45778888877654 223445554
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.. .+.+......++.++.+.|||||.++.
T Consensus 146 ~i~~---~~~~~~~~~~~l~~~~r~LKpgG~~~i 176 (230)
T d1g8sa_ 146 VIYE---DVAQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp EEEE---CCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred Eeec---cccchHHHHHHHHHHHHhcccCceEEE
Confidence 4321 233446778899999999999999873
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.4e-13 Score=118.91 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCC----CcEEEEEcceeeccCCCCcee
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~D 191 (379)
...+|.+|||||||+|..+..+|+. + ..+|+++|.++ +++.|++++++.++. +++.++.+|......+...||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 5689999999999999999999984 4 56999999999 999999999876642 568999999988776668899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|++... +.+ +..++.+.|||||+++.
T Consensus 153 ~I~~~~~---~~~------ip~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 153 AIHVGAA---APV------VPQALIDQLKPGGRLIL 179 (224)
T ss_dssp EEEECSB---BSS------CCHHHHHTEEEEEEEEE
T ss_pred hhhhhcc---hhh------cCHHHHhhcCCCcEEEE
Confidence 9997643 221 12345688999999873
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.44 E-value=1.3e-13 Score=125.24 Aligned_cols=121 Identities=20% Similarity=0.109 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcce
Q 016992 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKI 180 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~ 180 (379)
|...+..+...... ...++.+|||++||+|.+++.++..|+ +|++||.|+ +++.|++|+..|++.+ +++++++|+
T Consensus 115 dqr~nr~~~~~~~~--~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~ 191 (309)
T d2igta1 115 EQIVHWEWLKNAVE--TADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA 191 (309)
T ss_dssp GGHHHHHHHHHHHH--HSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH
T ss_pred chhHHHHHHHHHHh--hccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH
Confidence 44445444443332 235788999999999999999999887 899999999 9999999999999874 699999999
Q ss_pred eecc----CCCCceeEEEEecCccccCC-------hhhHHHHHHHHHhcccCCEEEE
Q 016992 181 EEIE----LPVTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 181 ~~~~----~~~~~~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~li 226 (379)
.++- ....+||+||++++.+.... +..+..++..+.++|+|||.++
T Consensus 192 ~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 192 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred HHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 7652 12478999999987543221 2345677788889999999755
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.44 E-value=7.3e-13 Score=118.35 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=90.1
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+..........+|||||||+|.++..+++. +..+++++|+.++++.+++++...++.+++.++.+|+.+ +.+ ..+|+
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~ 150 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADV 150 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEE
T ss_pred HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchh
Confidence 444445567789999999999999999994 567999999854999999999999999999999999875 344 56999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++..+.+.+ .......+|+++++.|||||+++..
T Consensus 151 v~~~~vLh~~-~d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 151 VLLSFVLLNW-SDEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp EEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcccccccc-CcHHHHHHHHHHHhhcCCcceeEEE
Confidence 9987654433 2244568899999999999998843
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.3e-13 Score=123.31 Aligned_cols=138 Identities=12% Similarity=-0.028 Sum_probs=102.8
Q ss_pred cchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHH
Q 016992 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMA 160 (379)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a 160 (379)
....|.+++...+...+++ +...+...+|.+|||+|+|+|+.+.+++.. ..+.|+++|.++ .+...
T Consensus 75 ~~~~~~~G~~~vQD~sS~l------------~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l 142 (284)
T d1sqga2 75 ALPGFEDGWVTVQDASAQG------------CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRV 142 (284)
T ss_dssp GSTTGGGTSEEECCHHHHT------------HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHH
T ss_pred hChhhhccEEEeccccccc------------cccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhH
Confidence 3345666666666555554 223356789999999999999999999985 346899999999 99999
Q ss_pred HHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCccccCCh---hh----------------HHHHHHHHHhccc
Q 016992 161 KQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFE---NM----------------LNTVLYARDKWLV 220 (379)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~---~~----------------~~~~l~~~~~~Lk 220 (379)
++++++.|+.+ +.+...|..... ...+.||.|+.+++|++.... ++ -..+|....++||
T Consensus 143 ~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk 221 (284)
T d1sqga2 143 YDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 221 (284)
T ss_dssp HHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE
T ss_pred hhhhhcccccc-eeeeccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcC
Confidence 99999999854 555554443222 223789999999988765321 11 1478888999999
Q ss_pred CCEEEEecCCceE
Q 016992 221 DDGIVLPDKASLY 233 (379)
Q Consensus 221 pgG~lip~~~~~~ 233 (379)
|||+|++++|++.
T Consensus 222 ~gG~lvYsTCS~~ 234 (284)
T d1sqga2 222 TGGTLVYATCSVL 234 (284)
T ss_dssp EEEEEEEEESCCC
T ss_pred CCceEEEeeecCc
Confidence 9999999999863
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.42 E-value=6.5e-13 Score=114.27 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
.+..|||||||+|..+..+|+ .+...++|||+++ ++..|.+++...+++ +|.++++|+.++. +++.++|.|++..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhcccc
Confidence 345899999999999999998 4667999999999 999999999999995 6999999998875 5678899998754
Q ss_pred CccccC--Chh---hHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLL--FEN---MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lip 227 (379)
+....- |.. .-+.+++.+.++|||||.|+.
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i 144 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 144 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence 322111 000 126889999999999999974
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.41 E-value=1.4e-13 Score=120.12 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=79.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.+.+.+.+|.+|||||||+|.++..+|+.+ .+|+++|.++ +++.|++++... .++.++.+|......+.++||+
T Consensus 62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHH
Confidence 4455678999999999999999999999984 5999999999 999999887643 5799999998765444578999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|++... +.+ +...+.+.|||||+|+.
T Consensus 138 Iiv~~a---~~~------ip~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 138 VVVWAT---APT------LLCKPYEQLKEGGIMIL 163 (224)
T ss_dssp EEESSB---BSS------CCHHHHHTEEEEEEEEE
T ss_pred HHhhcc---hhh------hhHHHHHhcCCCCEEEE
Confidence 997542 221 12344578999999873
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.41 E-value=5.5e-13 Score=112.78 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv 194 (379)
..+|.+|||++||+|.+++.++..|+.+|++||.+. +++.++++++..+..++++++++|+...- ....+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 457899999999999999999999999999999999 99999999999998888999999987642 2346899999
Q ss_pred EecCccccCChhhHHHHHHHHH--hcccCCEEEEec
Q 016992 195 SEWMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (379)
++|+ |.. .....++..+. .+|+|+|.++.+
T Consensus 119 lDPP-Y~~---~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echh-hhh---hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 9985 432 34455666554 579999998853
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=9.9e-14 Score=123.81 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=78.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-------------------------
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV------------------------- 172 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~------------------------- 172 (379)
...+|.+|||||||+|.++..++..+..+|+|+|+|+ |++.|++++...+....
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3467889999999999998888777677899999999 99999999876543210
Q ss_pred ---E-EEEEcce----eeccCCCCceeEEEEecCccccC-ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 173 ---I-TVLKGKI----EEIELPVTKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 173 ---i-~~~~~d~----~~~~~~~~~~D~Iv~~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ .....+. ...+++.++||+|++..+.+++. ...++..+++++.++|||||.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~ 191 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 191 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEE
Confidence 0 1111111 11234468899999865433332 234678899999999999999984
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=2.7e-13 Score=118.51 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=83.5
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCce
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (379)
...+.||.+|||+|||+|.++.++|+. | .++|+|+|+++ |++.++++++..+ ++..+..|+.... .....+
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCCE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccce
Confidence 356789999999999999999999994 4 57999999999 9999999876553 4777888875543 334789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+++.. +......++.++.+.|||||.++.
T Consensus 145 D~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 145 DVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEE
Confidence 99987632 235677899999999999999874
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=3.8e-13 Score=123.41 Aligned_cols=139 Identities=14% Similarity=0.034 Sum_probs=107.6
Q ss_pred ccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHH
Q 016992 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MAN 158 (379)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~ 158 (379)
.....|.+++..++...+++ ....+...+|.+|||+|||+|+.+.+++.. +.+.++++|.++ .+.
T Consensus 88 ~~~~~~~~G~~~vQD~aS~l------------~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~ 155 (313)
T d1ixka_ 88 TSTPEFLTGLIYIQEASSMY------------PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLR 155 (313)
T ss_dssp GGSHHHHTTSEEECCHHHHH------------HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHH
T ss_pred ccCHhhhhceEEEecccccc------------hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHH
Confidence 33456667776655544443 223355789999999999999999999884 346899999999 999
Q ss_pred HHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCCh------------hh-------HHHHHHHHHhcc
Q 016992 159 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE------------NM-------LNTVLYARDKWL 219 (379)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~------------~~-------~~~~l~~~~~~L 219 (379)
.+++++++.|+. ++.+...|...++.....||.|+.+++|++.... .. ...+|....++|
T Consensus 156 ~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l 234 (313)
T d1ixka_ 156 ETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL 234 (313)
T ss_dssp HHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhh-ccccccccccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhee
Confidence 999999999995 5788888887776555889999999887765321 11 147788889999
Q ss_pred cCCEEEEecCCceE
Q 016992 220 VDDGIVLPDKASLY 233 (379)
Q Consensus 220 kpgG~lip~~~~~~ 233 (379)
||||.+|+++|++.
T Consensus 235 k~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 235 KPGGILVYSTCSLE 248 (313)
T ss_dssp EEEEEEEEEESCCC
T ss_pred CCCcEEEEeeccCC
Confidence 99999999999863
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=9.5e-13 Score=111.49 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (379)
..+.+|||++||+|.+++.++..|+.+|++||.+. +++.+++++...+. .+++++++|+.++. ....+||+|+++|+
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCc
Confidence 46789999999999999999999999999999999 99999999999887 45899999987653 33578999999975
Q ss_pred ccccCChhhHHHHHHHHH--hcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARD--KWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~--~~LkpgG~lip 227 (379)
|.. .....++..+. .+|+++|.++.
T Consensus 121 -Y~~---~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 121 -FRR---GLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp -SST---TTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -ccc---chHHHHHHHHHHCCCCCCCeEEEE
Confidence 432 34555666554 47999999884
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=8.2e-13 Score=118.14 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=99.7
Q ss_pred hhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 016992 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (379)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (379)
......|-++..++.+.+.+.......+..+|+|+|||+|.+++.+++.+..+|+|+|+|+ ++..|++|++.+++.+++
T Consensus 83 ~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~ 162 (271)
T d1nv8a_ 83 LVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF 162 (271)
T ss_dssp ECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred EEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCcee
Confidence 3444567777888888877765544445568999999999999999887778999999999 999999999999999899
Q ss_pred EEEEcceeeccC-CCCceeEEEEecCccccC---------ChhhH---------HHHHHHHHhcccCCEEEEec
Q 016992 174 TVLKGKIEEIEL-PVTKVDIIISEWMGYFLL---------FENML---------NTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 174 ~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l~---------~~~~~---------~~~l~~~~~~LkpgG~lip~ 228 (379)
.++.+|..+... ..++||+|||+++ |.-. +++.. ..+.+-+.++|+|||.++..
T Consensus 163 ~i~~~~~~~~~~~~~~~fDlIVsNPP-YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 163 FVRKGEFLEPFKEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp EEEESSTTGGGGGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEeecccccccccccCcccEEEEccc-ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 999999876532 2378999999974 3321 12111 12222245789999998843
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.35 E-value=4.6e-13 Score=115.92 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=83.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.+.+.+.+|.+|||||||+|..+..+|+. | .+|+++|.++ +++.|++++...++ +++.++++|..+...+..+||
T Consensus 70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pfD 147 (215)
T d1jg1a_ 70 MLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYD 147 (215)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEE
T ss_pred HHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCcce
Confidence 445567899999999999999999999985 5 4899999999 99999999999998 569999999988655568899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.|++... +. ..+.. +...|+|||+++
T Consensus 148 ~Iiv~~a---~~--~ip~~----l~~qL~~gGrLv 173 (215)
T d1jg1a_ 148 VIIVTAG---AP--KIPEP----LIEQLKIGGKLI 173 (215)
T ss_dssp EEEECSB---BS--SCCHH----HHHTEEEEEEEE
T ss_pred eEEeecc---cc--cCCHH----HHHhcCCCCEEE
Confidence 9997542 22 12223 346799999987
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.9e-12 Score=116.03 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=77.6
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC--------------------------
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-------------------------- 170 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-------------------------- 170 (379)
....+|.+|||||||+|.++...+.....+|+|+|+|+ |++.+++.+...+..
T Consensus 50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 34567899999999999887665554456999999999 999999877543211
Q ss_pred ---CcEEEEEcceeec------cCCCCceeEEEEecCccccC-ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 171 ---NVITVLKGKIEEI------ELPVTKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 171 ---~~i~~~~~d~~~~------~~~~~~~D~Iv~~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..-.++..|+..- ....++||+|++..+.+.+. +...+..+++++.++|||||.++.
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~ 196 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 196 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0112344454332 12246899999865544432 234678999999999999999983
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=1.8e-12 Score=110.46 Aligned_cols=71 Identities=25% Similarity=0.248 Sum_probs=62.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
....|++|||+|||+|.+++.++..|+.+|+|||+++ +++.|++++. ++.++++|+.+++ ++||+|++++
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhcC---CcceEEEeCc
Confidence 4568999999999999999999999988999999999 9999998753 4789999998764 7899999997
Q ss_pred C
Q 016992 198 M 198 (379)
Q Consensus 198 ~ 198 (379)
+
T Consensus 116 P 116 (197)
T d1ne2a_ 116 P 116 (197)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=2.8e-12 Score=120.82 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=82.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC-------CC-CcEEE-EEcc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FS-NVITV-LKGK 179 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~-------~~-~~i~~-~~~d 179 (379)
...|.+...+.+|.+|||||||+|.+++.+|+ .|.++|+|||+++ +++.|+++++..+ .. ..+.+ ..++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 33455567789999999999999999999987 5778999999999 9999999887642 11 12333 3333
Q ss_pred eeeccC---CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 180 IEEIEL---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 180 ~~~~~~---~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.+. ....+|+|+++. ..+.+.+...+.++.+.|||||+||.
T Consensus 285 f~~~~~~d~~~~~adVV~inn----~~f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNN----FLFDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECC----TTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred hhhccccccccccceEEEEec----ccCchHHHHHHHHHHHhcCCCcEEEE
Confidence 332211 124578888753 22347788999999999999999984
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.8e-12 Score=117.17 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-----CC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEE--EEEcceeec------c
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-----GA--AHVYAVECSQ-MANMAKQIVEANGFSNVIT--VLKGKIEEI------E 184 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-----g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~--~~~~d~~~~------~ 184 (379)
.++.+|||||||+|.++..+++. +. .+++|||+|+ |++.|+++++......++. +.+.+++++ .
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44458999999999988877652 11 3689999999 9999999887644323344 445444432 2
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++++||+|++..+ +.+..++..+++++.++|+|||.++.
T Consensus 119 ~~~~~fD~I~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~i 158 (280)
T d1jqea_ 119 KELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLI 158 (280)
T ss_dssp SSCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCceeEEEEccc---eecCCCHHHHHHHHHhhCCCCCEEEE
Confidence 44689999998654 44447789999999999999999873
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=5.6e-12 Score=108.19 Aligned_cols=76 Identities=30% Similarity=0.338 Sum_probs=67.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....+|++|||+|||+|.+++.++..|+.+|+|+|+++ +++.|++++..++. +++++.+|+..+. ++||+|+++
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~---~~fD~Vi~n 116 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMN 116 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEEC
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC---CcCcEEEEc
Confidence 45568999999999999999999999888999999999 99999999998885 4889999987763 789999999
Q ss_pred cC
Q 016992 197 WM 198 (379)
Q Consensus 197 ~~ 198 (379)
++
T Consensus 117 PP 118 (201)
T d1wy7a1 117 PP 118 (201)
T ss_dssp CC
T ss_pred Cc
Confidence 86
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4.7e-12 Score=115.03 Aligned_cols=139 Identities=12% Similarity=-0.013 Sum_probs=100.4
Q ss_pred CccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HH
Q 016992 81 KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MA 157 (379)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~ 157 (379)
+.....|-.++..++...+++ ....+...+|.+|||+|||+|+.+.++|.. +...|+++|+++ .+
T Consensus 65 l~~~~~~~~G~~~~QD~sS~l------------~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~ 132 (293)
T d2b9ea1 65 LHEHPLYRAGHLILQDRASCL------------PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL 132 (293)
T ss_dssp CTTSHHHHTTSEEECCTGGGH------------HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred cccChHHhCcEEEEcCCcccc------------cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH
Confidence 333345666665555444443 222245688999999999999999999873 457999999999 99
Q ss_pred HHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEEecCccccCCh------------h-----hH----HHHHH
Q 016992 158 NMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGYFLLFE------------N-----ML----NTVLY 213 (379)
Q Consensus 158 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~~~~~l~~~------------~-----~~----~~~l~ 213 (379)
..+++++++.|+. ++.+...|...+... .++||.|+.+++|++.... . .+ ..++.
T Consensus 133 ~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~ 211 (293)
T d2b9ea1 133 ASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALC 211 (293)
T ss_dssp HHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ceeeeehhhhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHH
Confidence 9999999999995 599999998876533 2679999999887765210 0 01 23444
Q ss_pred HHHhcccCCEEEEecCCceE
Q 016992 214 ARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 214 ~~~~~LkpgG~lip~~~~~~ 233 (379)
... .|+|||.+++++|++.
T Consensus 212 ~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 212 HAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp HHT-TCTTCCEEEEEESCCC
T ss_pred Hhh-hcccccEEEEeeccCC
Confidence 444 4799999999999863
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=7.6e-12 Score=108.93 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc-C------CCEEEEEecHH-HHHHHHHHHHHc-----CCCCcEEEEEcceeeccC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA-G------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~-g------~~~v~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~ 185 (379)
.+.++.+|||||||+|..+..+++. | ..+|+++|.++ +++.|++++... ++ .++.++++|..+...
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYP 155 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEecccccccc
Confidence 5689999999999999999988884 2 24899999999 999999887543 33 469999999988665
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.++||.|++... +.. .+ ..+.+.|||||+++
T Consensus 156 ~~~~fD~Iiv~~a---~~~--~p----~~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 156 PNAPYNAIHVGAA---APD--TP----TELINQLASGGRLI 187 (223)
T ss_dssp GGCSEEEEEECSC---BSS--CC----HHHHHTEEEEEEEE
T ss_pred cccceeeEEEEee---chh--ch----HHHHHhcCCCcEEE
Confidence 5678999998543 221 11 23468899999987
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=2.6e-11 Score=104.88 Aligned_cols=105 Identities=20% Similarity=0.365 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D 191 (379)
.+.++|||+|||+|..++.+|+. + .++|+++|.++ +++.|++++...|+.++|+++.+|+.++- ....+||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 35579999999999999999984 3 46999999999 99999999999999999999999998752 2346799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+|+.+.- .........+.+..++|+|||+++...
T Consensus 135 ~ifiD~~----~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLDHW----KDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEECSC----GGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeeccc----ccccccHHHHHHHhCccCCCcEEEEeC
Confidence 9997531 111112234566778999999988654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.18 E-value=5.4e-11 Score=100.42 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeecc---CCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIE---LPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~---~~~~~~D~Iv~ 195 (379)
..+.+|||+.||||.+++.++..|+.+|+.||.+. .++.++++++..++.+ ...++..|+.+.. ....+||+|++
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 36789999999999999999999999999999999 9999999999988754 5777777765532 22457999999
Q ss_pred ecCccccCChhhHHHHHHHHH--hcccCCEEEEec
Q 016992 196 EWMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (379)
+|+ |.. .....++..+. .+|+++|.++.+
T Consensus 122 DPP-Y~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPP-FHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCC-SSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chh-Hhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 985 433 44566666664 479999999853
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=8.8e-11 Score=103.97 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC------CCCceeEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL------PVTKVDII 193 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~I 193 (379)
+..+|||+|||+|.+++.++. .+..+++|+|+++ +++.|+++++.+++.+++.+++.+.....+ ..++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 446999999999999999888 4556999999999 999999999999999999999876544321 24689999
Q ss_pred EEecC
Q 016992 194 ISEWM 198 (379)
Q Consensus 194 v~~~~ 198 (379)
+|+++
T Consensus 141 vsNPP 145 (250)
T d2h00a1 141 MCNPP 145 (250)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 99985
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=4.8e-11 Score=101.21 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=87.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (379)
+...+...++..+||++||+|..+..+++ .+..+|+|+|.++ |++.|+++++..+ +++.++++++.++. +.
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcC
Confidence 33445578999999999999999999988 4567999999999 9999999987765 67999999987753 33
Q ss_pred CCceeEEEEecCcccc-------CChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.++||.|+.+. |..- .........+..+.++|+|||.++
T Consensus 93 ~~~vdgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 93 IEKVDGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp CSCEEEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred CCCcceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 57899999773 2110 123456788999999999999987
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.6e-10 Score=100.07 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=89.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (379)
.+...+.+. ...++|||||||+|..++.+|+. + .++|+++|.++ ..+.|++++...|+.++++++.+|+.+..
T Consensus 49 ~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~ 125 (219)
T d2avda1 49 QLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD 125 (219)
T ss_dssp HHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence 444444432 56689999999999999999984 3 46999999999 99999999999999999999999986642
Q ss_pred -----CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 185 -----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 185 -----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
...++||+|+.+.- .......+..+.++|+|||.++...
T Consensus 126 ~~~~~~~~~~fD~ifiD~d------k~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 126 ELLAAGEAGTFDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp HHHHTTCTTCEEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhhhhcccCCccEEEEeCC------HHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 12478999997631 1345677788889999999998543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=5e-10 Score=95.72 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|+|+|+|.|.-++.+|- .+..+|+.+|.+. .+...++.+...++. ++++++.+++++... .+||+|+|..+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~-~~fD~V~sRA~ 141 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSE-PPFDGVISRAF 141 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCC-SCEEEEECSCS
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhccc-cccceehhhhh
Confidence 4567999999999999999998 4667999999999 999999999999994 699999999987543 78999999875
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+..++.-+..++++||.++.
T Consensus 142 -------~~~~~ll~~~~~~l~~~g~~~~ 163 (207)
T d1jsxa_ 142 -------ASLNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEE
T ss_pred -------cCHHHHHHHHHHhcCCCcEEEE
Confidence 4567899999999999999984
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.99 E-value=5.8e-10 Score=96.88 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C-----CCCce
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~ 190 (379)
...++||+||+++|..++.+|+ .+ .++|+.+|.++ ..+.|++++.+.|+.++|+++.+++.+.- + ..++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3567999999999999999998 33 47999999999 99999999999999999999999997642 1 13689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
|+|+.+.- .......+..+.++|+|||.++....
T Consensus 138 D~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 138 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred eEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 99997641 14456778888899999999996543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=5.5e-09 Score=97.22 Aligned_cols=96 Identities=20% Similarity=0.117 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
...+.+.+.+.+.....++.+|||+.||+|.+++.+|+. .++|+|+|.++ +++.|+++++.||+. +++++.+++++.
T Consensus 195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~ 272 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSC
T ss_pred hhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhh
Confidence 345566666766667778899999999999999999987 46999999999 999999999999995 699999998764
Q ss_pred cC----CCCceeEEEEecCcccc
Q 016992 184 EL----PVTKVDIIISEWMGYFL 202 (379)
Q Consensus 184 ~~----~~~~~D~Iv~~~~~~~l 202 (379)
.. ...++|+||.+++-.++
T Consensus 273 ~~~~~~~~~~~d~vilDPPR~G~ 295 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLLDPARAGA 295 (358)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCC
T ss_pred hhhhhhhhccCceEEeCCCCccH
Confidence 31 13679999999986664
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=1e-08 Score=89.05 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~ 196 (379)
.+.+|+|||+|.|.-++.+|- .+..+|+.+|.+. .+...+......++. ++.+++..++++... .++||+|+|.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEEh
Confidence 567999999999999999998 5778999999999 999999999999995 699999999887532 3689999998
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+ ..+..++.-...++++||.++.
T Consensus 149 Av-------a~l~~ll~~~~~~l~~~g~~i~ 172 (239)
T d1xdza_ 149 AV-------ARLSVLSELCLPLVKKNGLFVA 172 (239)
T ss_dssp CC-------SCHHHHHHHHGGGEEEEEEEEE
T ss_pred hh-------hCHHHHHHHHhhhcccCCEEEE
Confidence 76 5678899999999999999984
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.85 E-value=4.5e-09 Score=91.73 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=71.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
..+.|.......++++|||||||+|.++..+++.+ ++|+|||+++ +++.++++.... ++++++++|+.+++++..
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccc
Confidence 44556777778899999999999999999999985 4999999999 999998876543 579999999999887645
Q ss_pred ceeEEEEecCcccc
Q 016992 189 KVDIIISEWMGYFL 202 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l 202 (379)
....||++. .|.+
T Consensus 85 ~~~~vv~NL-PYnI 97 (235)
T d1qama_ 85 QSYKIFGNI-PYNI 97 (235)
T ss_dssp CCCEEEEEC-CGGG
T ss_pred ccceeeeee-hhhh
Confidence 555678885 4654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=2.4e-09 Score=95.89 Aligned_cols=106 Identities=19% Similarity=0.133 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---------CCCCcEEEEEcceeeccCCCCce
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
.+.++||.||+|.|..+..+.+.+..+|++||+++ +++.|++.+..+ .-..+++++.+|+..+.-..++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 45679999999999999998887778999999999 999999866322 22468999999997654335789
Q ss_pred eEEEEecCccccCChhh--HHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENM--LNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+++.....- .... -..+++.+.+.|+|||+++.
T Consensus 151 DvIi~D~~~~~~-~~~~L~t~eF~~~~~~~L~~~Gv~v~ 188 (276)
T d1mjfa_ 151 DVIIADSTDPVG-PAKVLFSEEFYRYVYDALNNPGIYVT 188 (276)
T ss_dssp EEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEeCCCCCC-CcccccCHHHHHhhHhhcCCCceEEE
Confidence 999998753211 1111 15788999999999999983
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.76 E-value=1.5e-08 Score=92.96 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=80.9
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~------g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
...+.......++.+|||.|||+|.++..+.+. ....++|+|+++ ++..|+.++...+.. ..+.++|....
T Consensus 106 ~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~~ 183 (328)
T d2f8la1 106 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLAN 183 (328)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhccccccc
Confidence 333444445567789999999999998888652 123799999999 999999998887753 56777776554
Q ss_pred cCCCCceeEEEEecCccccCChh----------------hHHHHHHHHHhcccCCEEEE
Q 016992 184 ELPVTKVDIIISEWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~li 226 (379)
.. ..+||+|+++++ ++..... ....++..+.+.|+|||+++
T Consensus 184 ~~-~~~fD~vi~NPP-y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 184 LL-VDPVDVVISDLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp CC-CCCEEEEEEECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred cc-cccccccccCCC-CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 33 378999999986 3321111 11346788889999999876
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=8.2e-09 Score=93.83 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--C--CCCcEEEEEcceeecc-CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--G--FSNVITVLKGKIEEIE-LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (379)
...++||.||.|.|..+..+.+. +..+|++||+++ +++.|++.+... + -..+++++.+|+.+.- ....+||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45679999999999999999885 567999999999 999999987542 1 1367999999998763 224789999
Q ss_pred EEecCccccCChh--h--HHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFEN--M--LNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~--~--~~~~l~~~~~~LkpgG~lip 227 (379)
+++.......... . -..+++.+.+.|+|||+++.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 9986433221111 1 25788999999999999984
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.70 E-value=1.1e-08 Score=92.01 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeeccC-CCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIEL-PVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~-~~~~~D~Iv 194 (379)
...++||-||.|.|..+..+.+. +..+|++||+++ +++.|++.+..+. + ..+++++.+|+...-- ..++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34579999999999999999985 567999999999 9999999876532 1 3689999999987642 247899999
Q ss_pred EecCccccCChh--hHHHHHHHHHhcccCCEEEEec
Q 016992 195 SEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++.......... .-..+++.+.+.|+|||+++..
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 986432110001 1257889999999999999843
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.69 E-value=1.3e-09 Score=95.65 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=70.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.|.+.....++.+|||||||+|.++..+++.+ ++|+|||+++ +++.+++++... .+++++++|+.+++++...++
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~~~~~~~ 95 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc---cchhhhhhhhhccccccceee
Confidence 35555667889999999999999999999985 5999999999 998887665432 579999999999988877788
Q ss_pred EEEEecCccccC
Q 016992 192 IIISEWMGYFLL 203 (379)
Q Consensus 192 ~Iv~~~~~~~l~ 203 (379)
.|+++.+ |.+.
T Consensus 96 ~vv~NLP-Y~Is 106 (245)
T d1yuba_ 96 KIVGNIP-YHLS 106 (245)
T ss_dssp EEEEECC-SSSC
T ss_pred eEeeeee-hhhh
Confidence 8888864 6553
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.67 E-value=9.3e-08 Score=80.74 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCCch----HHHHHHHc-C----CCEEEEEecHH-HHHHHHHHH--------------HH----cCCC--
Q 016992 121 FKDKVVLDVGAGTGI----LSLFCAKA-G----AAHVYAVECSQ-MANMAKQIV--------------EA----NGFS-- 170 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~----~~~~la~~-g----~~~v~~vD~s~-~~~~a~~~~--------------~~----~~~~-- 170 (379)
.+..+|+++|||+|. +++.+.+. + .-+|+|+|+++ +++.|++.. .+ .+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999995 45555543 1 12799999999 999987432 11 0100
Q ss_pred ----------CcEEEEEcceeecc-CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 171 ----------NVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 171 ----------~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.+...+..... .+.++||+|+|..+..++ .......+++.+.+.|+|||.|+.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 11334444433322 224789999997664443 345567999999999999999884
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.64 E-value=1.8e-07 Score=81.90 Aligned_cols=105 Identities=15% Similarity=0.065 Sum_probs=77.5
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 112 NVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 112 ~~i~~~~~-~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
..+.+... .....+|||||||+|.++..+++ .+..+++..|+.+.++ ..+..++|+++.+|+.+- .+ .
T Consensus 70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~ri~~~~gd~~~~-~p--~ 139 (244)
T d1fp1d2 70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAPPLSGIEHVGGDMFAS-VP--Q 139 (244)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCCTTEEEEECCTTTC-CC--C
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccCCCCCeEEecCCcccc-cc--c
Confidence 34444444 35567999999999999999988 5667999999866433 334457899999998653 33 4
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.|+++...+.+.. .......+|+++++.|+|||+++.
T Consensus 140 ~D~~~l~~vLh~~-~de~~~~iL~~~~~aL~pgg~llI 176 (244)
T d1fp1d2 140 GDAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVII 176 (244)
T ss_dssp EEEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEEehhhhhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 5999976554433 234466899999999999999884
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.59 E-value=1.2e-07 Score=84.89 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC---CCCcEEEEEcceeecc--CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
...++||-||.|.|..+..+.+. +..+|++||+++ +++.|++.+..+. -..+++++.+|+...- ...++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 45579999999999999999986 567999999999 9999999775422 2377999999987654 334689999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+.......... .-..+++.+.+.|+|||+++..
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 9986532211111 1257889999999999999954
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=9.3e-08 Score=84.99 Aligned_cols=89 Identities=25% Similarity=0.350 Sum_probs=73.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
..+.|.......++..|||||+|+|.++..+++.+ ++|++||+++ +++..++.+......++++++.+|+...+++
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-- 85 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-- 85 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--
Confidence 34445555667789999999999999999999986 4999999999 9999999887766657899999999888764
Q ss_pred ceeEEEEecCcccc
Q 016992 189 KVDIIISEWMGYFL 202 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l 202 (379)
.++.||++.+ |.+
T Consensus 86 ~~~~vV~NLP-Y~I 98 (278)
T d1zq9a1 86 FFDTCVANLP-YQI 98 (278)
T ss_dssp CCSEEEEECC-GGG
T ss_pred hhhhhhcchH-HHH
Confidence 4578888864 544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.8e-08 Score=87.37 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC---CCCcEEEEEcceeecc-CCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIE-LPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (379)
...++||-||.|.|..+..+.+. +..+|+.||+++ +++.|++.+..+. -..+++++.+|+...- ...++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45579999999999999999985 578999999999 9999999875421 1368999999987753 2347899999
Q ss_pred EecCccccCChh-hHHHHHHHHHhcccCCEEEEe
Q 016992 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (379)
++.....-.... .-..+++.+.+.|+|||+++.
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 190 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 190 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence 986532111101 113678889999999999984
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.56 E-value=4.6e-08 Score=87.07 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeecc-CCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (379)
...++||-||.|.|..+..+.+. +..+|+.||+++ +++.|++.+..+. + ..+++++.+|+...- ...++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45679999999999999999985 678999999999 9999999875421 1 367999999987753 2357899999
Q ss_pred EecCccccCChh-hHHHHHHHHHhcccCCEEEEec
Q 016992 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+.....-.... .-..+++.+.+.|+|||+++..
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 986432211111 1357888999999999999843
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.53 E-value=1.1e-07 Score=81.74 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=74.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.+.+.......++.+|||.|||+|.++..+.+ . ....++|+|+++ .+..+ ....++++|.......
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~~~~~~- 76 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG- 76 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS-
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehhccccc-
Confidence 34455556677889999999999998888776 3 346899999998 65443 3367788888776544
Q ss_pred CceeEEEEecCccccCChh--------------------------hHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFEN--------------------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~--------------------------~~~~~l~~~~~~LkpgG~li 226 (379)
.+||+|+++++........ ....++....++|+|||++.
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~ 141 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 141 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceE
Confidence 8899999997522111000 12355667778999999976
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.53 E-value=3.5e-08 Score=88.98 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCC---CCcEEEEEcceeecc-CCCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIE-LPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (379)
...++||-||.|.|..+..+.+. +..+|+.||+++ +++.|++.+..+.- ..+++++.+|+...- ...++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 45679999999999999999995 457999999999 99999998754321 267999999998753 2247899999
Q ss_pred EecCccccCChh-hHHHHHHHHHhcccCCEEEEec
Q 016992 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++.......... .-..+++.+.+.|+|||+++..
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 986432111100 1257788999999999999854
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.52 E-value=9e-08 Score=88.85 Aligned_cols=99 Identities=20% Similarity=0.116 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCC--------------cEEEEEcceeeccC
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN--------------VITVLKGKIEEIEL 185 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~--------------~i~~~~~d~~~~~~ 185 (379)
++.+|||..||+|..++.+|. .|+.+|+++|+|+ .++.+++|++.|++.+ .+.+.+.|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 678999999999999997666 7888999999999 9999999999998643 36667777654432
Q ss_pred -CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 -PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 -~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.||+|..++++. ...+++...+.++.||.+..
T Consensus 125 ~~~~~fDvIDiDPfGs-------~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 125 ERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEE
T ss_pred hhcCcCCcccCCCCCC-------cHHHHHHHHHHhccCCEEEE
Confidence 236799999998532 34578888888999999873
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=2.4e-07 Score=77.07 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CCCC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVT 188 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 188 (379)
-..++.+||||||++|.++..+++. +...|+++|+.++ ..+ .++.++++|..+.. ....
T Consensus 19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPI-VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCC-TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------ccc-CCceEeecccccchhhhhhhhhccCc
Confidence 3578899999999999999998873 3479999998762 123 45899999987642 1247
Q ss_pred ceeEEEEecCccccCChhh---------HHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENM---------LNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~---------~~~~l~~~~~~LkpgG~li 226 (379)
++|+|+|+..... .+... ....+.-+.++|++||.+|
T Consensus 88 ~~DlVlSD~ap~~-sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV 133 (180)
T d1ej0a_ 88 KVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp CEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEecccchh-cccchhHHHHHHHHHHHHHHhhhhccCCCCcEE
Confidence 8999999964332 22222 2355566679999999998
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=8.3e-07 Score=73.77 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=79.8
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCC
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (379)
...+...+|..++|..+|.|+.+..+.+.+ ++|+|+|.++ ++..|++. ...++.+++.+..++. ...+
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCC
Confidence 334557899999999999999999998874 5999999999 99888764 2257999999887764 2347
Q ss_pred ceeEEEEecCccccCC-------hhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~li 226 (379)
++|.|+.++ |..... ...+...|.....+|+|||.++
T Consensus 85 ~vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ 128 (182)
T d1wg8a2 85 RVDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLV 128 (182)
T ss_dssp CEEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEE
Confidence 899999874 221110 1234567888889999999987
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.34 E-value=8.2e-07 Score=77.53 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
...+|||||||+|.++..+++ .+..+++..|..+.++ ..+..++|+++.+|+.+- . ..+|+++...+.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~rv~~~~gD~f~~-~--p~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE-------NLSGSNNLTYVGGDMFTS-I--PNADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCBTTEEEEECCTTTC-C--CCCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH-------hCcccCceEEEecCcccC-C--CCCcEEEEEeecc
Confidence 446899999999999999988 5667999999976443 334558899999998753 2 4579999765533
Q ss_pred ccCChhhHHHHHHHHHhcccCC---EEEE
Q 016992 201 FLLFENMLNTVLYARDKWLVDD---GIVL 226 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~Lkpg---G~li 226 (379)
.. .......+|+++++.|+|| |+++
T Consensus 150 dw-~d~~~~~iL~~~~~al~pgg~~~~ll 177 (244)
T d1fp2a2 150 NW-TDKDCLRILKKCKEAVTNDGKRGKVT 177 (244)
T ss_dssp GS-CHHHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred cC-ChHHHHHHHHHHHHHcCcccCCcEEE
Confidence 32 2344568999999999998 6665
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=2.5e-06 Score=74.39 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=72.9
Q ss_pred HHHhccCC-CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 113 VIYQNKFL-FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 113 ~i~~~~~~-~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
.+...... ....+|||||||+|.+++.+++ .+..++++.|+.+.++. ....++++++.+|+.+- .| ..
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~r~~~~~~d~~~~-~P--~a 140 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-------APSYPGVEHVGGDMFVS-IP--KA 140 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-------CCCCTTEEEEECCTTTC-CC--CC
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-------cccCCceEEeccccccc-CC--Cc
Confidence 34443333 3357999999999999999999 56679999999764332 23347899999998653 33 34
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+++...+.+. ........+|+++++.|+|||.++.
T Consensus 141 d~~~l~~vlh~-~~d~~~~~iL~~~~~al~pgg~~li 176 (243)
T d1kyza2 141 DAVFMKWICHD-WSDEHCLKFLKNCYEALPDNGKVIV 176 (243)
T ss_dssp SCEECSSSSTT-SCHHHHHHHHHHHHHHCCSSSCEEE
T ss_pred ceEEEEEEeec-CCHHHHHHHHHHHHHhcCCCceEEE
Confidence 66664333222 2234567899999999999998874
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.19 E-value=3.1e-06 Score=80.00 Aligned_cols=115 Identities=16% Similarity=0.050 Sum_probs=83.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc----C----------CCEEEEEecHH-HHHHHHHHHHHcCCC-CcE
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQ-MANMAKQIVEANGFS-NVI 173 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~----g----------~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i 173 (379)
..+.+.......++.+|+|.+||+|.+...+.+. + ...++|+|+++ +...|+-++.-.|+. ...
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 3344555555677889999999999999888763 1 12599999999 999999888877764 235
Q ss_pred EEEEcceeeccCCCCceeEEEEecCccccCChh---------------hHHHHHHHHHhcccCCEEEE
Q 016992 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN---------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~li 226 (379)
.+..+|...... ..+||+|+++++ ++..... .-..++..+.++|++||++.
T Consensus 230 ~i~~~d~l~~~~-~~~fD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 295 (425)
T d2okca1 230 PIVCEDSLEKEP-STLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 295 (425)
T ss_dssp SEEECCTTTSCC-SSCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred eeecCchhhhhc-ccccceEEecCC-CCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence 667777665443 478999999975 4332111 11357788889999999876
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=5e-07 Score=79.13 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=64.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC---
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--- 187 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 187 (379)
+.|.......++..|||||||+|.++..+++.+ ++|++||+++ +++..++..... ++++++.+|+.++++..
T Consensus 11 ~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 11 DSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhccccccc
Confidence 345555566789999999999999999999985 5999999999 999987744322 57999999999876431
Q ss_pred --CceeEEEEecCcccc
Q 016992 188 --TKVDIIISEWMGYFL 202 (379)
Q Consensus 188 --~~~D~Iv~~~~~~~l 202 (379)
...-.|+++. .|.+
T Consensus 87 ~~~~~~~vvgNl-PY~I 102 (252)
T d1qyra_ 87 KMGQPLRVFGNL-PYNI 102 (252)
T ss_dssp HHTSCEEEEEEC-CTTT
T ss_pred ccCCCeEEEecc-hHHH
Confidence 1223677775 3554
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.08 E-value=3.5e-06 Score=73.09 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=60.3
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------CCcEEEEEcceeeccC-CCCceeEE
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------SNVITVLKGKIEEIEL-PVTKVDII 193 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~--------~~~i~~~~~d~~~~~~-~~~~~D~I 193 (379)
.+|||+-||.|..++.+|..|. +|+++|.++ +....+..+.+... ..+++++++|+.++-. ...+||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999986 899999999 87777766654321 2479999999877532 24679999
Q ss_pred EEecCc
Q 016992 194 ISEWMG 199 (379)
Q Consensus 194 v~~~~~ 199 (379)
+.++|.
T Consensus 169 YlDPMF 174 (250)
T d2oyra1 169 YLDPMF 174 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999974
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.06 E-value=4e-06 Score=72.26 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=73.8
Q ss_pred hhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 016992 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (379)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-----g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (379)
++........|.+.|.+. ++++||+||++.|..+.+++.. ..++|+++|+.+ ....+.. ..++|
T Consensus 62 ~~k~p~d~~~~~eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I 131 (232)
T d2bm8a1 62 MLKDPDTQAVYHDMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENI 131 (232)
T ss_dssp CCSCHHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTE
T ss_pred cccCHHHHHHHHHHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccce
Confidence 344444455555555532 5679999999999887777642 246999999976 4433221 12579
Q ss_pred EEEEcceeecc----CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 174 TVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 174 ~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+++++|..+.. +....+|+|+.+.- ..++..+..+ +...+|++||++|...
T Consensus 132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~---H~~~~v~~~~--~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA---HANTFNIMKW--AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEECCSSCSGGGGGGSSSCSSEEEEESS---CSSHHHHHHH--HHHHTCCTTCEEEECS
T ss_pred eeeecccccHHHHHHHHhcCCCEEEEcCC---cchHHHHHHH--HHhcccCcCCEEEEEc
Confidence 99999986543 22346788886642 2233333332 3568999999998654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.77 E-value=6.3e-06 Score=70.68 Aligned_cols=107 Identities=16% Similarity=0.260 Sum_probs=63.7
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH---HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ---MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
|.+.....++.+|+|||||+|.++..++... ...|.|+++-- +.... ...++. +-+++...+... .++.+.
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~---~~~~~~-ni~~~~~~~dv~-~l~~~~ 132 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGW-NLVRLQSGVDVF-FIPPER 132 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTG-GGEEEECSCCTT-TSCCCC
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcc---cccccc-ccccchhhhhHH-hcCCCc
Confidence 3333456788899999999999999999853 34777777631 10000 011111 234444333221 233588
Q ss_pred eeEEEEecCccccCCh----hhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFE----NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~----~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+|+...+ -.+. .-.-.++..+.++|+|||.|+
T Consensus 133 ~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~Fv 172 (257)
T d2p41a1 133 CDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFC 172 (257)
T ss_dssp CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEE
Confidence 99999995322 1110 111266777789999999876
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=2.2e-05 Score=75.93 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=75.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc----C---------------CCEEEEEecHH-HHHHHHHHHHHcCCC
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECSQ-MANMAKQIVEANGFS 170 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~----g---------------~~~v~~vD~s~-~~~~a~~~~~~~~~~ 170 (379)
.+.|.......++.+|+|.+||+|.+...+.+. . ...++|+|+++ +...|+-++--.+..
T Consensus 153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~ 232 (524)
T d2ar0a1 153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 232 (524)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence 344555556678889999999999998877662 1 12689999999 999999888665543
Q ss_pred CcE----EEEEcceeecc-CCCCceeEEEEecCccccCChh------------hHHHHHHHHHhcccCCEEEE
Q 016992 171 NVI----TVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFEN------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 171 ~~i----~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~li 226 (379)
..+ .+...+....+ ....+||+|+++|+ ++..... .--.++..+.+.|+|||++.
T Consensus 233 ~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 233 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhhhhhhhhhcccccccceeEEecCC-ccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 211 12222222111 12368999999975 4322111 11247788889999999865
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.55 E-value=5.6e-05 Score=62.32 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=65.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-----
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----- 183 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----- 183 (379)
.++.+.....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ .++.|++ .|...-+.....+..+.
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~ 93 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIM 93 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccceEEEeccccchHHHHHHHH
Confidence 3455555678999999999985 778888888 5878999999999 8888865 34321111111111111
Q ss_pred c-CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 E-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .....+|+|+-. .+. +..+....+.|++||+++
T Consensus 94 ~~~~~~g~Dvvid~-vG~--------~~~~~~a~~~l~~~G~iv 128 (182)
T d1vj0a2 94 DITHGRGADFILEA-TGD--------SRALLEGSELLRRGGFYS 128 (182)
T ss_dssp HHTTTSCEEEEEEC-SSC--------TTHHHHHHHHEEEEEEEE
T ss_pred HhhCCCCceEEeec-CCc--------hhHHHHHHHHhcCCCEEE
Confidence 0 112569998842 221 234455668899999987
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.48 E-value=0.00027 Score=57.63 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=66.1
Q ss_pred HHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C
Q 016992 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (379)
+.......+|.+||-+|||. |.++..+++ .|+..|+++|.++ .++.+++. |.. .++..+-.+.. +
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI 92 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHHH
Confidence 34445678999999999985 556667777 5888999999999 88888763 432 33433222221 2
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++.+|+|+-. .+ -...++...++++|+|+++.
T Consensus 93 t~gg~D~vid~-~G--------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 93 TDGGVNFALES-TG--------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp TTSCEEEEEEC-SC--------CHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCcEEEEc-CC--------cHHHHHHHHhcccCceEEEE
Confidence 23679998842 21 13455667789999999873
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.43 E-value=0.00015 Score=60.46 Aligned_cols=102 Identities=22% Similarity=0.128 Sum_probs=67.1
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (379)
.....+|.+||.+|||. |.++..+++ .|+.+|+++|.++ .++.|++. |. -.++...-.++. ...
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALLGE 92 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHHSS
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHHhCC
Confidence 35788999999999998 667777777 6888999999999 88888753 43 122211111110 123
Q ss_pred CceeEEEEecCccc-------cCChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYF-------LLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~-------l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+|+++-. .+.- ..........++...+.++|||+++
T Consensus 93 ~g~D~vid~-vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~ 137 (195)
T d1kola2 93 PEVDCAVDA-VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIG 137 (195)
T ss_dssp SCEEEEEEC-CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEC-ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEE
Confidence 568998842 2210 0001112467888889999999987
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.41 E-value=0.00024 Score=57.99 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=66.7
Q ss_pred HHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------
Q 016992 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------ 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------ 184 (379)
+.+...+.+|.+||-+|||. |.+++.+++ .|+..|+++|.++ .++.|++ .|.. .++...-.+..
T Consensus 20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---cccCCccchhhhhhhHh
Confidence 33446678999999999998 888888888 6888999999999 8888776 4442 22221111100
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (379)
.....+|+++-. .+ . +..+....+.|++| |.++.
T Consensus 93 ~~~~~G~d~vie~-~G-------~-~~~~~~a~~~~~~g~G~~v~ 128 (174)
T d1e3ia2 93 ELTAGGVDYSLDC-AG-------T-AQTLKAAVDCTVLGWGSCTV 128 (174)
T ss_dssp HHHTSCBSEEEES-SC-------C-HHHHHHHHHTBCTTTCEEEE
T ss_pred hhhcCCCcEEEEe-cc-------c-chHHHHHHHHhhcCCeEEEe
Confidence 113678999842 21 1 34567777889996 88873
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.41 E-value=0.00013 Score=59.74 Aligned_cols=94 Identities=26% Similarity=0.269 Sum_probs=64.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 188 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 188 (379)
....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ .++.|++ .|.. .++.-.-.++. ....
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---DILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---EEECGGGSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---ccccccchhHHHHHHHHhhcc
Confidence 5678999999999997 888888888 5888999999999 8888875 3432 22322111111 1235
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+|+|+-. .+. ...++...+.|+|+|.++.
T Consensus 96 G~D~vid~-~g~--------~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 96 GVDRVIMA-GGG--------SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp CEEEEEEC-SSC--------TTHHHHHHHHEEEEEEEEE
T ss_pred CcceEEEc-cCC--------HHHHHHHHHHHhcCCEEEE
Confidence 59998843 221 2344556688999999884
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=0.00023 Score=64.10 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=57.5
Q ss_pred hhcCHHHHHHHHHHHH--hccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE
Q 016992 100 MLKDVVRTKSYQNVIY--QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (379)
Q Consensus 100 ~l~d~~r~~~~~~~i~--~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (379)
++.|..-.+...+.+. ......++..|||||+|.|.++..+.+. ++++|+++|+++ +++..++.+.. +++++
T Consensus 19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~i 94 (322)
T d1i4wa_ 19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQI 94 (322)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEE
T ss_pred ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEE
Confidence 3445544444444432 1112235779999999999999999885 467999999999 99998876542 56899
Q ss_pred EEcceeec
Q 016992 176 LKGKIEEI 183 (379)
Q Consensus 176 ~~~d~~~~ 183 (379)
+++|+..+
T Consensus 95 i~~D~l~~ 102 (322)
T d1i4wa_ 95 LKRDPYDW 102 (322)
T ss_dssp ECSCTTCH
T ss_pred EeCchhhc
Confidence 99998654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00022 Score=57.91 Aligned_cols=94 Identities=27% Similarity=0.233 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--------CC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------LP 186 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 186 (379)
....+|.+||-+|||+ |.++..+++ .|+.+|+++|.++ .++.|++ .|.. .++..+-.+.. ..
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---ccccccccccccccccccccC
Confidence 4568899999999986 566667777 5888999999999 8888875 3442 12221111110 01
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|+|+-. .+ . +..+....+++++||+++.
T Consensus 95 g~g~Dvvid~-~G-------~-~~~~~~a~~~~~~gG~iv~ 126 (171)
T d1pl8a2 95 GCKPEVTIEC-TG-------A-EASIQAGIYATRSGGTLVL 126 (171)
T ss_dssp TSCCSEEEEC-SC-------C-HHHHHHHHHHSCTTCEEEE
T ss_pred CCCceEEEec-cC-------C-chhHHHHHHHhcCCCEEEE
Confidence 2578998842 21 1 3456677789999999873
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.20 E-value=0.00057 Score=55.63 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=39.8
Q ss_pred HHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 016992 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~ 162 (379)
+.+.....+|.+||-+|||. |..+..+++ .|+.+|+++|.++ .++.|++
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 33446689999999999986 466666777 6888999999999 9988875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.14 E-value=0.00083 Score=54.73 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=62.3
Q ss_pred HHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-cceeec-----c
Q 016992 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEI-----E 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~-----~ 184 (379)
+.+.....+|.+||-+|||. |.++..+++ .|+++|+++|.++ .++.|++. |.. .++. .+.... .
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~---~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT---ECISPKDSTKPISEVLS 93 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc---EEECccccchHHHHHHH
Confidence 44445678999999999986 566667777 5888999999999 99998875 321 2222 111110 0
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.....+|+++-.. +....+...+..+++.+|+++
T Consensus 94 ~~~g~G~d~vi~~~--------g~~~~~~~a~~~~~~~~G~~v 128 (176)
T d1d1ta2 94 EMTGNNVGYTFEVI--------GHLETMIDALASCHMNYGTSV 128 (176)
T ss_dssp HHHTSCCCEEEECS--------CCHHHHHHHHTTSCTTTCEEE
T ss_pred HhccccceEEEEeC--------CchHHHHHHHHHhhcCCeEEE
Confidence 1136799888432 223344445555666768876
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.98 E-value=0.0016 Score=55.85 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=75.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcC-----------------------------------------CCEEEEEecHH-
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-----------------------------------------AAHVYAVECSQ- 155 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g-----------------------------------------~~~v~~vD~s~- 155 (379)
.....+..++|-.||+|.+.+.+|-.. ...++|.|+++
T Consensus 46 ~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ 125 (249)
T d1o9ga_ 46 LPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE 125 (249)
T ss_dssp SSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred hcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHH
Confidence 333455679999999999988877420 01467999999
Q ss_pred HHHHH---HHHHHHcCCCCcEEEEEcceeeccC-----CCCceeEEEEecCccccCCh-------hhHHHHHHHHHhccc
Q 016992 156 MANMA---KQIVEANGFSNVITVLKGKIEEIEL-----PVTKVDIIISEWMGYFLLFE-------NMLNTVLYARDKWLV 220 (379)
Q Consensus 156 ~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~D~Iv~~~~~~~l~~~-------~~~~~~l~~~~~~Lk 220 (379)
+++.| ++++...|+.+.|.+.+.|+.+... +....++||++++ |+-.-. ..+..+...+.+.|.
T Consensus 126 ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP-YGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 126 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP-YGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC-GGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC-ccccccccccchHHHHHHHHHHHHccCC
Confidence 99888 5689999999899999999865431 1356799999974 553321 235566666777775
Q ss_pred CCEEEE
Q 016992 221 DDGIVL 226 (379)
Q Consensus 221 pgG~li 226 (379)
....++
T Consensus 205 ~~s~~~ 210 (249)
T d1o9ga_ 205 AHAVIA 210 (249)
T ss_dssp TTCEEE
T ss_pred CCcEEE
Confidence 444444
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.97 E-value=0.002 Score=52.06 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCCce
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (379)
...+|.+||-+|+|. |.++..+++ .|+..|+++|.++ .++.+++ .|.. .++..+-.... .....+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---eeecCcccHHHHHHHhhCCCCc
Confidence 357899999999986 566667776 6888999999999 8888775 3331 33332211111 123569
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|+-.. + . ...+....+.|++||+++.
T Consensus 102 d~vid~~-g-------~-~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 102 NVAMDFV-G-------S-QATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp EEEEESS-C-------C-HHHHHHGGGGEEEEEEEEE
T ss_pred eEEEEec-C-------c-chHHHHHHHHHhCCCEEEE
Confidence 9888432 1 1 2356667789999999884
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.91 E-value=0.0012 Score=53.05 Aligned_cols=94 Identities=22% Similarity=0.233 Sum_probs=61.8
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-ec-------c-C
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI-------E-L 185 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~-------~-~ 185 (379)
....+|.+||-+|||+ |.++..+++ .|+ +|+++|.++ .++.|++. |. + ..+...... +. . .
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga-~-~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GA-D-VTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TC-S-EEEECCTTTSCHHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CC-c-EEEeccccccccchhhhhhhcc
Confidence 4578999999999984 777777888 575 999999999 88888763 32 1 222221111 10 0 0
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....+|+|+-. .+ . +..+....++|+|+|+++.
T Consensus 95 ~g~g~D~vid~-~g----~----~~~~~~a~~~~~~~G~iv~ 127 (170)
T d1e3ja2 95 IGDLPNVTIDC-SG----N----EKCITIGINITRTGGTLML 127 (170)
T ss_dssp SSSCCSEEEEC-SC----C----HHHHHHHHHHSCTTCEEEE
T ss_pred cccCCceeeec-CC----C----hHHHHHHHHHHhcCCceEE
Confidence 12568988742 21 1 3456666689999999883
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00073 Score=54.80 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=62.7
Q ss_pred HHhccCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCC
Q 016992 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~ 186 (379)
+.....+.+|.+||-.|+ | .|.+++.+++ .|+ +|++++.++ ..+.+++ .|....+..-..|..+- ...
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVG 94 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHC
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCcccccccccccHHHHhhhhhc
Confidence 444456789999999997 3 4677888888 576 899998888 7777654 55532111111111110 012
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|+|+... + ...+....+.|+|+|.++.
T Consensus 95 ~~g~d~v~d~~--------g--~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 95 EKGIDIIIEML--------A--NVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp TTCEEEEEESC--------H--HHHHHHHHHHEEEEEEEEE
T ss_pred cCCceEEeecc--------c--HHHHHHHHhccCCCCEEEE
Confidence 46799998531 1 2346666789999999884
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00016 Score=58.68 Aligned_cols=95 Identities=19% Similarity=0.131 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-cceeec-cCCCCceeE
Q 016992 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEI-ELPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~-~~~~~~~D~ 192 (379)
....+|.+||.+|+| .|.++..+++ .|+ +|+++|.++ .++.|++ .|.. .++. .+-.+. ....+.+|+
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYFDTFDL 94 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc----cCCc---EEeeccchHHHHHhhhcccce
Confidence 467899999999998 4777888887 576 899999999 8888876 3432 2222 111111 111367998
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+.. .+.. ... .+....+.|+|+|+++.
T Consensus 95 vi~~-~~~~--~~~----~~~~~~~~l~~~G~iv~ 122 (168)
T d1piwa2 95 IVVC-ASSL--TDI----DFNIMPKAMKVGGRIVS 122 (168)
T ss_dssp EEEC-CSCS--TTC----CTTTGGGGEEEEEEEEE
T ss_pred EEEE-ecCC--ccc----hHHHHHHHhhccceEEE
Confidence 8852 1111 100 12334688999999884
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.53 E-value=0.0033 Score=50.19 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=58.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCCc
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 189 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~ 189 (379)
....+|.+||-+|+|. |.++..+++ .| .+|+++|.++ .++.+++ .|.. .++..+-.+.. ...+.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhcCC
Confidence 4578999999999986 677777888 56 5999999999 8887765 4542 23322221111 11133
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+|++.. . ...+....+.|+|||+++.
T Consensus 95 ~~~i~~~~----~------~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 95 HGVLVTAV----S------NSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp EEEEECCS----C------HHHHHHHHTTEEEEEEEEE
T ss_pred cccccccc----c------chHHHHHHHHhcCCcEEEE
Confidence 34444211 1 2345667789999999884
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.52 E-value=0.00048 Score=55.27 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
++.+|+-||+|. |.-++..|+ .|+ .|+++|.+. .++..+..... ++++...+-..+...-...|+||...+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeee
Confidence 567999999996 666777776 676 999999999 88877766543 356665554444322256899998643
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+...+.-+-+++.+.+|||.+++
T Consensus 105 ---ipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 105 ---VPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp ---CTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred ---cCCcccCeeecHHHHhhcCCCcEEE
Confidence 2222333334456678899999998
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.30 E-value=0.0063 Score=48.66 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=62.2
Q ss_pred cCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCC
Q 016992 118 KFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (379)
....++.+||-+||+ .|.++..+++ .|...|+++|.++ .++.+++. |.. .++..+-.+.. ...
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHHhhc
Confidence 567899999999973 3566666666 6878999999999 88888763 432 23332222211 123
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+|+|+... + -...++...+.|+|||+++.
T Consensus 96 ~~~d~vid~~-g--------~~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 96 KGVDAVIDLN-N--------SEKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp SCEEEEEESC-C--------CHHHHTTGGGGEEEEEEEEE
T ss_pred ccchhhhccc-c--------cchHHHhhhhhcccCCEEEE
Confidence 6699888532 1 13445566789999999873
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0039 Score=49.97 Aligned_cols=93 Identities=25% Similarity=0.219 Sum_probs=59.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-ccCCCCceeEE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~I 193 (379)
....+|.+||-+|||. |.++..+++ .|+ +++++|.++ ..+.+++ .|.. .++...-.+ .......+|++
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTTTCEEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHhcCCCcee
Confidence 5678999999999985 777788888 576 777899888 7777664 3432 222221111 11223679998
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+-.. + .. ..+....+.|+++|+++.
T Consensus 98 id~~-g----~~----~~~~~~~~~l~~~G~iv~ 122 (168)
T d1uufa2 98 LNTV-A----AP----HNLDDFTTLLKRDGTMTL 122 (168)
T ss_dssp EECC-S----SC----CCHHHHHTTEEEEEEEEE
T ss_pred eeee-e----cc----hhHHHHHHHHhcCCEEEE
Confidence 8532 1 11 123445589999999884
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.17 E-value=0.0076 Score=48.36 Aligned_cols=97 Identities=21% Similarity=0.172 Sum_probs=61.8
Q ss_pred HHhccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-eeec------
Q 016992 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEI------ 183 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~------ 183 (379)
+.+.....+|.+||-.|||. |.++..+++ .|+..|+++|.++ ..+.+++ .|.. .++..+ ..+.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc---EEEeCCchhhHHHHHHH
Confidence 44446678999999999984 456666666 6888999999999 8888775 3432 222211 1110
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
......+|+|+-. ++ . ...+.....++++||.++
T Consensus 93 ~~~~~g~D~vid~-~G-------~-~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 93 EMTDGGVDYSFEC-IG-------N-VKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHTTSCBSEEEEC-SC-------C-HHHHHHHHHTBCTTTCEE
T ss_pred HHcCCCCcEeeec-CC-------C-HHHHHHHHHhhcCCceeE
Confidence 0113679999853 21 1 245566678888886654
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.11 E-value=0.0058 Score=53.96 Aligned_cols=73 Identities=25% Similarity=0.173 Sum_probs=57.1
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~ 201 (379)
.+|||+-||.|++++.+-++|...+.++|+++ +++.-+.+. ++ .++.+|+.++... ...+|+++..++|..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~~--~~~~~Di~~~~~~~~~~~dll~~g~PCq~ 73 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKISSDEFPKCDGIIGGPPCQS 73 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----CS--EEEESCTTTSCGGGSCCCSEEEECCCCTT
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----CC--CCccCChhhCCHhHcccccEEeecccccc
Confidence 37999999999999988888987888999999 777766653 22 4677899887532 357899999877665
Q ss_pred cC
Q 016992 202 LL 203 (379)
Q Consensus 202 l~ 203 (379)
+.
T Consensus 74 fS 75 (324)
T d1dcta_ 74 WS 75 (324)
T ss_dssp TS
T ss_pred cc
Confidence 53
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.94 E-value=0.0062 Score=54.10 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (379)
..+.+||||-||.|++++.+-++|...|.++|+++ +++..+.+... ..++|+.++... ...+|+++..++
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeecccc
Confidence 35689999999999999999889987888999999 88888877632 125788776533 256899999887
Q ss_pred ccccC
Q 016992 199 GYFLL 203 (379)
Q Consensus 199 ~~~l~ 203 (379)
|..+.
T Consensus 81 Cq~fS 85 (327)
T d2c7pa1 81 CQAFS 85 (327)
T ss_dssp CTTTC
T ss_pred cchhh
Confidence 66553
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.02 Score=49.07 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
.+|++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.++..+.+.++.++++|+.+.. -.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999999887 34445556687 899999999 88888888888777678899999987642 01
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 87 ~g~iD~lVnnA 97 (257)
T d1xg5a_ 87 HSGVDICINNA 97 (257)
T ss_dssp HCCCSEEEECC
T ss_pred cCCCCEEEecc
Confidence 36789999864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.72 E-value=0.004 Score=49.69 Aligned_cols=92 Identities=18% Similarity=0.127 Sum_probs=56.9
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CCCCc
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 189 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~ 189 (379)
....+|.+||-.|+|+ |.++..+++. |+ +|+++|.++ .++.+++ .|.. .++...-.+.. ...+.
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~~ 94 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGV 94 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCCC
Confidence 4568999999999987 5666667774 55 899999999 8877765 4542 12211111110 11233
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+|+ +.. -...+....+.|+|+|.++.
T Consensus 95 ~~~v~-~~~---------~~~~~~~a~~~l~~~G~i~~ 122 (168)
T d1rjwa2 95 HAAVV-TAV---------SKPAFQSAYNSIRRGGACVL 122 (168)
T ss_dssp EEEEE-SSC---------CHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEe-ecC---------CHHHHHHHHHHhccCCceEe
Confidence 44443 221 13456677788999999884
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.027 Score=45.12 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=61.7
Q ss_pred HHhccCCCCCCEEEEEcCCC--chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~--G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.+.....+|++||-.|+|. |..+..+|+ .|+ +|++++.++ ..+.+++ .|.. .++..+-.++.
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~----lGa~---~vi~~~~~d~~~~v~~ 91 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKE 91 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh----cCCe---EEEECCCCCHHHHHHH
Confidence 44445678999999997775 577788888 565 999999999 8888765 3542 22322212211
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.....+|+|+... + . ..+......|+++|.++
T Consensus 92 ~t~g~g~d~v~d~~-g----~-----~~~~~~~~~l~~~G~~v 124 (179)
T d1qora2 92 ITGGKKVRVVYDSV-G----R-----DTWERSLDCLQRRGLMV 124 (179)
T ss_dssp HTTTCCEEEEEECS-C----G-----GGHHHHHHTEEEEEEEE
T ss_pred HhCCCCeEEEEeCc-c----H-----HHHHHHHHHHhcCCeee
Confidence 1246789887532 1 1 13445668899999876
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.28 E-value=0.024 Score=45.57 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=59.6
Q ss_pred HHhccCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.+...+.+|.+||-.|+ | .|.+++.+|+ .|+ +|+++..++ ..+.+++ .|.. .++...-.++.
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILE 88 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----cccc---ccccCCccCHHHHHHH
Confidence 444556789999999874 2 3677777777 576 777777676 6666654 4543 22221211111
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....||+|+... + ...+....+.|+++|+++.
T Consensus 89 ~t~~~g~d~v~d~~-g---------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSL-A---------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp HTTTCCEEEEEECC-C---------THHHHHHHHTEEEEEEEEE
T ss_pred HhCCCCEEEEEecc-c---------chHHHHHHHHhcCCCEEEE
Confidence 1236799999532 1 1245556689999999884
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.24 E-value=0.015 Score=49.36 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=40.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE 165 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~ 165 (379)
-.+|..|||.-||+|..+.++.+.| .+.+|+|+++ .++.|++++.
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence 3789999999999999999888886 4999999999 9999999875
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.20 E-value=0.042 Score=43.75 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=37.8
Q ss_pred HHhccCCCCCCEEEEEcCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 016992 114 IYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G-~~~~~la~-~g~~~v~~vD~s~-~~~~a~~ 162 (379)
+.+.....+|.+||-+|+|.+ ..+..+++ .++..|+++|.++ .++.|++
T Consensus 20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 444467889999999999985 44444444 6788999999999 8888765
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0068 Score=54.03 Aligned_cols=76 Identities=18% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCC--EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEEe
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISE 196 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~--~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~ 196 (379)
..+|+|+.||.|++++.+-++|.. -|.++|+++ +++..+.+.. ...++++|+.++... ...+|+++..
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEee
Confidence 358999999999999888777763 478999999 8887776542 245677888876532 2468999998
Q ss_pred cCccccCC
Q 016992 197 WMGYFLLF 204 (379)
Q Consensus 197 ~~~~~l~~ 204 (379)
++|..+..
T Consensus 76 pPCq~fS~ 83 (343)
T d1g55a_ 76 PPCQPFTR 83 (343)
T ss_dssp CC------
T ss_pred cccccccc
Confidence 87666543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.02 E-value=0.048 Score=43.50 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHhccCCCCCCEEEEEcCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 016992 114 IYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G-~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~ 163 (379)
+.+.....+|.+||-+|+|.+ ..+..+++ .|..+|+++|.++ ..+.+++.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 444466889999999999754 34444555 6788999999999 88887653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.95 E-value=0.021 Score=49.02 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=42.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~ 167 (379)
-.+|..|||.-||+|..+.++.+.|- +.+|+|+++ .++.|++++...
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 36899999999999999998888875 999999999 999999999764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.90 E-value=0.074 Score=42.59 Aligned_cols=96 Identities=19% Similarity=0.091 Sum_probs=63.0
Q ss_pred HHhccCCCCCCEEEEEcCCC--chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----
Q 016992 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~--G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (379)
+.+.....+|.+||-.|+|. |..+..+++ .|+ +|+++..++ ..+.+++ .|.. .++..+-++..
T Consensus 21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~~ 92 (182)
T d1v3va2 21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSLEEALK 92 (182)
T ss_dssp HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSCSCHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhhh---hhcccccccHHHHHHH
Confidence 44456678999999988866 466777788 465 999999888 7766655 4432 22222212110
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+-. + + ...++...+.|+++|.++.
T Consensus 93 ~~~~~Gvd~v~D~-v-------G--~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 93 KASPDGYDCYFDN-V-------G--GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HHCTTCEEEEEES-S-------C--HHHHHHHGGGEEEEEEEEE
T ss_pred HhhcCCCceeEEe-c-------C--chhhhhhhhhccCCCeEEe
Confidence 123679998842 2 1 2456778899999999883
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.86 E-value=0.0067 Score=48.73 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcC-CC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eeccCCCCceeE
Q 016992 118 KFLFKDKVVLDVGA-GT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGc-G~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~ 192 (379)
....+|++||-.|+ |. |..++.+++ .|+ +|++++.++ ..+.+++ .|... + +-..+. ..... ...+|+
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~-~~g~D~ 94 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEE-A-ATYAEVPERAKA-WGGLDL 94 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSE-E-EEGGGHHHHHHH-TTSEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccce-e-eehhhhhhhhhc-cccccc
Confidence 56789999999985 33 577777888 466 899999888 7777664 45432 1 111111 11112 367999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+- ..+ .. +....+.|+|+|+++.
T Consensus 95 v~d-~~G------~~----~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 95 VLE-VRG------KE----VEESLGLLAHGGRLVY 118 (171)
T ss_dssp EEE-CSC------TT----HHHHHTTEEEEEEEEE
T ss_pred ccc-ccc------hh----HHHHHHHHhcCCcEEE
Confidence 874 222 12 3445689999999883
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.76 E-value=0.016 Score=50.76 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~ 167 (379)
-.+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++...
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 46899999999999999998888875 999999999 999998876543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.60 E-value=0.0041 Score=50.37 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCC---C--CcEEEEEcceeeccC-------
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGF---S--NVITVLKGKIEEIEL------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~---~--~~i~~~~~d~~~~~~------- 185 (379)
.++.+||-||+|. |..+...|. .|+ .|+++|.+. .++..+......-- . ...+-..+.+.++..
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 3567999999997 566666666 676 999999999 87777654321100 0 000000011111100
Q ss_pred -----CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 -----PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 -----~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.-...|+||...+- .+...+.-+-+++.+.+|||.+++
T Consensus 106 ~~l~~~l~~aDlVI~tali---pG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALI---PGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHTTCSEEEECCCC---TTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHhhhhheeeeec---CCcccceeehHHHHHhcCCCcEEE
Confidence 01358999986432 222222234456678899999998
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.52 E-value=0.025 Score=45.49 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHhccCCCCCCEEEEEcCCC--chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCC
Q 016992 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPV 187 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~--G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~ 187 (379)
+.......+|.+||--|++. |..++.+++ .|+ +|+++--++ ..+.+++ .|....+.. ..+..+. ....
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~----lGa~~vi~~-~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAR-EDVMAERIRPLDK 96 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEEC-C---------CCS
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh----cccceeeec-chhHHHHHHHhhc
Confidence 44445567789999999765 477888888 565 889998888 8777764 344321211 1111111 1234
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+|+|+-. ++ ...+....+.|+|||+++.
T Consensus 97 ~gvD~vid~-vg---------g~~~~~~l~~l~~~Griv~ 126 (176)
T d1xa0a2 97 QRWAAAVDP-VG---------GRTLATVLSRMRYGGAVAV 126 (176)
T ss_dssp CCEEEEEEC-ST---------TTTHHHHHHTEEEEEEEEE
T ss_pred cCcCEEEEc-CC---------chhHHHHHHHhCCCceEEE
Confidence 789988743 22 1234555689999999984
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.49 E-value=0.07 Score=41.94 Aligned_cols=85 Identities=16% Similarity=0.063 Sum_probs=55.8
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++|.-||+|. +.++..+.+.|. +|+++|.++ .++.+++ .++-+ ....+.+.+ ...|+|+....
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~~~----~~~DiIilavp-- 66 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD---EAGQDLSLL----QTAKIIFLCTP-- 66 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS---EEESCGGGG----TTCSEEEECSC--
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hhccc---eeeeecccc----cccccccccCc--
Confidence 3677888884 345566666676 999999998 7776654 34322 122222222 56799985322
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
......+++++...|+++..++
T Consensus 67 ----~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 67 ----IQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp ----HHHHHHHHHHHGGGSCTTCEEE
T ss_pred ----Hhhhhhhhhhhhhhccccccee
Confidence 2556788899999999988776
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.12 E-value=0.34 Score=42.00 Aligned_cols=122 Identities=7% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCC--CcEEEEEcceee
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFS--NVITVLKGKIEE 182 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~--~~i~~~~~d~~~ 182 (379)
.|+..+-+.+.+..... ...|+.||||-=.-..-+...+..+++=||.-++++.-++.+.+.+.. .+..++..|+.+
T Consensus 73 ~Rtr~~D~~~~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 73 VRTNFFDTYFNNAVIDG-IRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhhC-CCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 34444445554443322 245667999986655444222334788888755888878888877643 557778877764
Q ss_pred cc--------CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 183 IE--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 183 ~~--------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
-. +.....-+++++.+.+++ .+.....+++.+.....||..+++.
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL-~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYL-PATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccC-CHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 21 122456788888775555 4467889999999999999998854
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.04 E-value=0.065 Score=43.28 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred HHhccCCCCCCEEEEEcCCC---chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----
Q 016992 114 IYQNKFLFKDKVVLDVGAGT---GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~---G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (379)
+.......+|.+||-+.+|+ |..++.+|+ .|+ +|+++=-+. ..+...+.++..|....|..-..+..++.
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~ 98 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIK 98 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHH
Confidence 44445678888888884444 466677777 577 666663333 44444445556665422211111222111
Q ss_pred ----CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....+|+|+- .++ ...+....+.|+|+|+++.
T Consensus 99 ~~~~~~g~~vdvv~D-~vg---------~~~~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 99 EWIKQSGGEAKLALN-CVG---------GKSSTGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHHHTCCEEEEEE-SSC---------HHHHHHHHHTSCTTCEEEE
T ss_pred HHHhhccCCceEEEE-CCC---------cchhhhhhhhhcCCcEEEE
Confidence 01256898883 221 1233455689999999883
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.79 E-value=0.077 Score=42.78 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=57.4
Q ss_pred cCCCCC--CEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CC
Q 016992 118 KFLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (379)
Q Consensus 118 ~~~~~~--~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (379)
...++| .+||-.|+ |.|..++.+|+ .|+..|+++..++ ....+ ....|.. .++...-.++. ..
T Consensus 24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l---~~~~gad---~vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL---TSELGFD---AAVNYKTGNVAEQLREAC 97 (187)
T ss_dssp SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH---HHHSCCS---EEEETTSSCHHHHHHHHC
T ss_pred hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh---hhcccce---EEeeccchhHHHHHHHHh
Confidence 445665 78999884 46899999999 6888888877665 33222 2234442 22222211111 11
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...+|+|+-. ++ ...+....+.|+++|+++.
T Consensus 98 ~~GvDvv~D~-vG---------g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 98 PGGVDVYFDN-VG---------GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp TTCEEEEEES-SC---------HHHHHHHHTTEEEEEEEEE
T ss_pred ccCceEEEec-CC---------chhHHHHhhhccccccEEE
Confidence 3679999832 21 2346677799999999983
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.61 E-value=0.12 Score=40.56 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=55.3
Q ss_pred EEEEEcCCC--chHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 125 VVLDVGAGT--GILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 125 ~VLDlGcG~--G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
+|+-||||. |.++..+.+.|. .+|+++|.++ .++.|++. ++.+ ....+..... ....|+|+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~~~--~~~~dlIila~p-- 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAKVE--DFSPDFVMLSSP-- 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGGGG--GTCCSEEEECSC--
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhhhh--ccccccccccCC--
Confidence 588899985 345555666663 5899999999 88877653 3211 1222222221 245799985432
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
......++..+...++++..++
T Consensus 72 ----~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 72 ----VRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ----HHHHHHHHHHHHHHSCTTCEEE
T ss_pred ----chhhhhhhhhhhcccccccccc
Confidence 1456778888888899887665
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.21 Score=40.32 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=66.2
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CCC--------------CcEEEEEcc
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GFS--------------NVITVLKGK 179 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~~~--------------~~i~~~~~d 179 (379)
++|--||+|+= .++..++..|. .|+.+|.++ .++.+++.+... +.. .++.+.. |
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 47899999972 55666677776 999999999 988887776532 221 1233222 2
Q ss_pred eeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
..+. ....|+|+-.. ......-..++..+.++++++..|.-++.++
T Consensus 83 ~~~a---~~~ad~ViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l 128 (192)
T d1f0ya2 83 AASV---VHSTDLVVEAI----VENLKVKNELFKRLDKFAAEHTIFASNTSSL 128 (192)
T ss_dssp HHHH---TTSCSEEEECC----CSCHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred hHhh---hcccceehhhc----ccchhHHHHHHHHHhhhcccCceeeccCccc
Confidence 1111 14578888432 3334567899999999999998887555444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.50 E-value=0.41 Score=35.74 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEE
Q 016992 124 KVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv 194 (379)
++|+-+|+ |.++..+++ .|. .|+.+|.++ .++.+++. . .+.++.+|+.+.. ..-..+|.++
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhcChhhhhhhc
Confidence 36777776 556665554 354 999999999 77766542 2 2578999987654 2236789888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (379)
+-.. ......+.....+.+.+...
T Consensus 71 ~~t~------~d~~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 71 AVTG------KEEVNLMSSLLAKSYGINKT 94 (132)
T ss_dssp ECCS------CHHHHHHHHHHHHHTTCCCE
T ss_pred ccCC------cHHHHHHHHHHHHHcCCceE
Confidence 6321 12223333444455666633
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.36 E-value=0.15 Score=45.40 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHc------------C-----CCEEEEEecHH--HHHHHHHHHHHcCCCCc--EEEEEcceee
Q 016992 124 KVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ--MANMAKQIVEANGFSNV--ITVLKGKIEE 182 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~------------g-----~~~v~~vD~s~--~~~~a~~~~~~~~~~~~--i~~~~~d~~~ 182 (379)
-+|.|+||.+|..++.+... + .-+|+--|+.. .-.+.+..-.......+ +..+.+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 47999999999776533210 1 12455556543 32222221111111111 2334455555
Q ss_pred ccCCCCceeEEEEecCccccCC------------------------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 183 IELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 183 ~~~~~~~~D~Iv~~~~~~~l~~------------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
--+|.++.|+++|....+.|.. ..++..+|+...+-|+|||+++.
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4577889999999654444421 12456899999999999999983
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.30 E-value=0.11 Score=41.16 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=59.8
Q ss_pred HHhccCCCCCCEEEEEcCCC--chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee--c-cCC
Q 016992 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--I-ELP 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~--G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~-~~~ 186 (379)
+.......++..||--|++. |..+..+|+ .|+ +|+++.-++ ..+.+++. |... + +...|... . ...
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad~-v-i~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASE-V-ISREDVYDGTLKALS 87 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSE-E-EEHHHHCSSCCCSSC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cccc-e-Eeccchhchhhhccc
Confidence 44444445666788877543 577788888 576 899999988 87777653 4421 2 22112111 1 122
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.+|+|+-. ++ ...+....+.|+|+|+++.
T Consensus 88 ~~gvd~vid~-vg---------g~~~~~~~~~l~~~G~iv~ 118 (167)
T d1tt7a2 88 KQQWQGAVDP-VG---------GKQLASLLSKIQYGGSVAV 118 (167)
T ss_dssp CCCEEEEEES-CC---------THHHHHHHTTEEEEEEEEE
T ss_pred CCCceEEEec-Cc---------HHHHHHHHHHhccCceEEE
Confidence 4679998743 21 1345667789999999883
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.16 Score=43.48 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=64.7
Q ss_pred CCEE-EEEcCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------CC
Q 016992 123 DKVV-LDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (379)
Q Consensus 123 ~~~V-LDlGcG~G~---~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (379)
|++| |-=|++.|+ ++..+++.+..+|+.++.+. .++.+.+.++..+. ++.++.+|+.+..- ..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5566 555666552 23344554445999999999 88888887877663 48889999877531 12
Q ss_pred CceeEEEEecCccccC---Ch---hhH-----------HHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLL---FE---NML-----------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~---~~---~~~-----------~~~l~~~~~~LkpgG~li 226 (379)
++.|++|.+. +.... .+ ..+ -.+.+.+...|+++|.++
T Consensus 80 g~iDiLVnNA-Gi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~iv 134 (275)
T d1wmaa1 80 GGLDVLVNNA-GIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVV 134 (275)
T ss_dssp SSEEEEEECC-CCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCcEEEEEcC-CcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 6799999874 21111 00 111 244566678888999877
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.75 E-value=0.06 Score=45.95 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=39.9
Q ss_pred EEEEcceeec--cCCCCceeEEEEecCccccC---------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 174 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLL---------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 174 ~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++.+|..++ .++++++|+|+.+++ |... +...+...+.++.|+|||||.++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPP-Yn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~ 69 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI 69 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCC-CCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 4677887775 467899999999975 4431 123457788899999999999873
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.51 E-value=0.84 Score=39.93 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcC---------------
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANG--------------- 168 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~--------------- 168 (379)
.|+..+...+.+.+...+...|+-||||.=.....+.. .+..+++=||..++++.=++.+.++.
T Consensus 79 ~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~ 158 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 158 (328)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccc
Confidence 46666666665544445566899999999877776654 44345667777664443333343321
Q ss_pred -----CCCcEEEEEcceeecc---------CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 169 -----FSNVITVLKGKIEEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 169 -----~~~~i~~~~~d~~~~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-+++..++.+|+.++. +.....-+++++.+..++. +.....+++.+.+....+..++
T Consensus 159 ~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~-~~~~~~li~~~~~~f~~~~~i~ 229 (328)
T d1rjda_ 159 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH-NNESQLLINTIMSKFSHGLWIS 229 (328)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHCSSEEEEE
T ss_pred ccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCC-HHHHHHHHHHHHHhCCCceEEE
Confidence 1256788888887642 1224456899998766554 4566788888888776554444
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.10 E-value=0.32 Score=41.11 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+...++.++.+|+.+... .
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 46889999999887 35666677787 899999998 887777666665544568889999876430 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 26799999863
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.33 Score=40.69 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ .++...+.+...+ .++.++.+|+.+... .
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57899999999987 45666677787 899999999 8877777777665 468899999877531 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+..|++|.+.
T Consensus 82 ~g~idilinna 92 (244)
T d1yb1a_ 82 IGDVSILVNNA 92 (244)
T ss_dssp TCCCSEEEECC
T ss_pred cCCCceeEeec
Confidence 36789999764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.91 E-value=0.42 Score=40.59 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------C
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (379)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.+ + .++.+.+.+...+. ++.++++|+.+.. .
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence 578999999998873 5556666777 89888876 4 67777777777764 5888999987642 0
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+..|++|...
T Consensus 93 ~~g~idilV~na 104 (272)
T d1g0oa_ 93 IFGKLDIVCSNS 104 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCcccccc
Confidence 126789999764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.90 E-value=0.36 Score=43.58 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=45.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLK 177 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~ 177 (379)
..++.+++|+||-.|..+..+++ .+ ..+|+++|+++ ..+..+++++.+... .++.++.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 45678999999999988887665 32 36999999999 999999999987653 2455554
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.98 Score=35.61 Aligned_cols=96 Identities=20% Similarity=0.096 Sum_probs=57.3
Q ss_pred HHhccCCCCCCEEEEEcCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCC
Q 016992 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPV 187 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG--~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~ 187 (379)
+.+.....++..||-.|+. .|..++.+|+ .|+ +|+++.-++ ..+.+++ .|. -.++.-+-.+. .+..
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~----lGa---d~vi~~~~~~~~~~l~~ 94 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKS----LGA---SRVLPRDEFAESRPLEK 94 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTE---EEEEEGGGSSSCCSSCC
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHh----hcc---ccccccccHHHHHHHHh
Confidence 4443334455588877643 3466777777 576 888988888 7776654 343 22333222111 1234
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+|.|+ +.++ ...+....+.|+++|+++.
T Consensus 95 ~~~~~vv-D~Vg---------g~~~~~~l~~l~~~Griv~ 124 (177)
T d1o89a2 95 QVWAGAI-DTVG---------DKVLAKVLAQMNYGGCVAA 124 (177)
T ss_dssp CCEEEEE-ESSC---------HHHHHHHHHTEEEEEEEEE
T ss_pred hcCCeeE-EEcc---------hHHHHHHHHHhccccceEe
Confidence 6688876 3331 2346677789999999984
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.58 E-value=0.38 Score=38.53 Aligned_cols=76 Identities=14% Similarity=0.026 Sum_probs=49.9
Q ss_pred cCCCCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCCCCce
Q 016992 118 KFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~ 190 (379)
....+|++||-.|++.| .++..+++.|+ +|+.++.+. .++.+.+.+.... ++.+...|..+. .-..+..
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~i 93 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGA 93 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCc
Confidence 44678999999998776 44555666776 999999998 7766666555432 234455555432 2113678
Q ss_pred eEEEEec
Q 016992 191 DIIISEW 197 (379)
Q Consensus 191 D~Iv~~~ 197 (379)
|++|...
T Consensus 94 Dilin~A 100 (191)
T d1luaa1 94 HFVFTAG 100 (191)
T ss_dssp SEEEECC
T ss_pred CeeeecC
Confidence 9999763
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.42 E-value=0.34 Score=40.96 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47899999998877 34556666787 899999999 8888888777666 45888999987642 01
Q ss_pred CCceeEEEEe
Q 016992 187 VTKVDIIISE 196 (379)
Q Consensus 187 ~~~~D~Iv~~ 196 (379)
.+..|++|.+
T Consensus 80 ~g~iDilVnn 89 (260)
T d1zema1 80 FGKIDFLFNN 89 (260)
T ss_dssp HSCCCEEEEC
T ss_pred hCCCCeehhh
Confidence 2679999975
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.95 E-value=0.66 Score=38.65 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++...+.+. .++..+..|+.+.. ..
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 46889999998876 34445556676 999999998 7766655443 35778888887642 01
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (243)
T d1q7ba_ 76 FGEVDILVNNA 86 (243)
T ss_dssp TCSCSEEEECC
T ss_pred cCCcceehhhh
Confidence 36799999764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=89.85 E-value=0.1 Score=43.78 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=38.6
Q ss_pred EEEEcceeec--cCCCCceeEEEEecCccccCC------------hhhHHHHHHHHHhcccCCEEEE
Q 016992 174 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 174 ~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~~------------~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++++|..++ .++++++|+|+.+++ |.... ...+...+.++.++|+|||.++
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPP-Y~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~ 71 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLY 71 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCC-CCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccc
Confidence 4788898774 367799999999975 54321 1224567889999999999886
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.71 E-value=0.36 Score=41.07 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeecc----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----------L 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----------~ 185 (379)
.+|+++|-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+.. .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999998876 34555666687 999999999 888888888776653 46899999987642 0
Q ss_pred CCCceeEEEEe
Q 016992 186 PVTKVDIIISE 196 (379)
Q Consensus 186 ~~~~~D~Iv~~ 196 (379)
..++.|++|.+
T Consensus 82 ~~g~iDilvnn 92 (272)
T d1xkqa_ 82 QFGKIDVLVNN 92 (272)
T ss_dssp HHSCCCEEEEC
T ss_pred HhCCceEEEeC
Confidence 12578999986
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.43 E-value=0.43 Score=40.61 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 46899999998887 34555566677 899999999 888888878777654 468999999876430
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 125789999863
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.13 E-value=0.47 Score=40.09 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 47889999998876 34555566687 899999999 888887777776653 468999999875420
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 126789999763
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.06 E-value=0.57 Score=39.47 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 47899999998876 34555666677 899999998 8877777777766 45888899986532 01
Q ss_pred -CCceeEEEEec
Q 016992 187 -VTKVDIIISEW 197 (379)
Q Consensus 187 -~~~~D~Iv~~~ 197 (379)
..+.|++|.+.
T Consensus 83 ~~~~idilvnnA 94 (259)
T d2ae2a_ 83 FHGKLNILVNNA 94 (259)
T ss_dssp TTTCCCEEEECC
T ss_pred hCCCceEEEECC
Confidence 24799999863
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=88.92 E-value=0.6 Score=39.30 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 185 (379)
.+|++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+. .+.++.+|+.+.. .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence 47899999999876 34555566687 999999999 88888788887774 4788889987643 1
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
-.+..|+++...
T Consensus 81 ~~g~idilinna 92 (258)
T d1ae1a_ 81 FDGKLNILVNNA 92 (258)
T ss_dssp TTSCCCEEEECC
T ss_pred hCCCcEEEeccc
Confidence 125789988753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=88.70 E-value=0.19 Score=43.40 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=41.8
Q ss_pred EEEEEcceeec--cCCCCceeEEEEecCccccCC------------hhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~~------------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
=+++++|..++ .++++++|+|+.+++ |.... ...+...+.++.++|+|+|.++....
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPP-Y~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~ 83 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 83 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCC-CcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence 47899998764 266799999999975 54321 12246778999999999999885433
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.62 E-value=0.41 Score=40.25 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------CC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (379)
.|+++|--|++.| .++..+++.|+ +|+.+|.+. .++.+.+.+....-..++.++.+|+.+... ..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 5889999998876 33445555676 899999998 777666655443333568899999876430 12
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+++|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 6799999864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.26 E-value=0.48 Score=39.87 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.++..+ .++.++.+|+.+... .
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47899999888776 23344445576 899999998 8887777777766 458889999876420 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 86 ~g~iDilvnnA 96 (255)
T d1fmca_ 86 LGKVDILVNNA 96 (255)
T ss_dssp HSSCCEEEECC
T ss_pred cCCCCEeeeCC
Confidence 26799999863
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.84 E-value=0.44 Score=39.98 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------C
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (379)
.+++++|-.|++.| ++..+++ .|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -
T Consensus 8 lenKvalITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 8 GENKVALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CSSCEEEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46889999998776 4444444 465 999999998 8887777777665 35889999987642 1
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 84 ~~g~iDilvnna 95 (251)
T d2c07a1 84 EHKNVDILVNNA 95 (251)
T ss_dssp HCSCCCEEEECC
T ss_pred hcCCceeeeecc
Confidence 136899999864
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.63 E-value=0.83 Score=40.58 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-------~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.+...|+|+|+|+|.++..+.+. . ...++.+|.|+ +.+.-++.+.. . .++.++. +..+++ ...-
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~-~~i~w~~-~~~~~~---~~~g 150 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--I-RNIHWHD-SFEDVP---EGPA 150 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--C-SSEEEES-SGGGSC---CSSE
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--c-ccceecc-Chhhcc---cCCe
Confidence 34468999999999998877652 1 24689999999 66665555442 2 3466543 444443 2236
Q ss_pred EEEEecC
Q 016992 192 IIISEWM 198 (379)
Q Consensus 192 ~Iv~~~~ 198 (379)
+|+|+-+
T Consensus 151 ~iiaNE~ 157 (365)
T d1zkda1 151 VILANEY 157 (365)
T ss_dssp EEEEESS
T ss_pred EEEeccc
Confidence 7887543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.68 Score=38.58 Aligned_cols=70 Identities=24% Similarity=0.194 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCce
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (379)
..|+++|-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+. . ..+..++.|+.+.. ..-+++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRE---C---PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 57899999998876 34455566677 899999998 66554432 2 23677888886542 123689
Q ss_pred eEEEEec
Q 016992 191 DIIISEW 197 (379)
Q Consensus 191 D~Iv~~~ 197 (379)
|++|.+.
T Consensus 78 DilVnnA 84 (244)
T d1pr9a_ 78 DLLVNNA 84 (244)
T ss_dssp CEEEECC
T ss_pred eEEEecc
Confidence 9999764
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.45 E-value=0.86 Score=38.16 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CCCC
Q 016992 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPVT 188 (379)
Q Consensus 123 ~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 188 (379)
|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+. ++.++.+|+.+.. ...+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 677888898776 34455566676 899999998 88877777777663 5889999987643 0136
Q ss_pred ceeEEEEec
Q 016992 189 KVDIIISEW 197 (379)
Q Consensus 189 ~~D~Iv~~~ 197 (379)
+.|++|.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 799999763
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.10 E-value=0.5 Score=40.00 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-----C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (379)
.+|+++|-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+.. .+++.++.+|+.+.. + .
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999998877 23444556676 899999998 77666555433 245888899987642 0 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|++|.+.
T Consensus 80 ~g~iD~lVnnA 90 (268)
T d2bgka1 80 HGKLDIMFGNV 90 (268)
T ss_dssp HSCCCEEEECC
T ss_pred cCCcceecccc
Confidence 26789999753
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.10 E-value=0.69 Score=38.93 Aligned_cols=74 Identities=24% Similarity=0.224 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C----C-
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----P- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~- 186 (379)
.+|+++|--|++.|+ ++..+++.|+ +|+.+|.++ .++.+.+.+...+. ++.++.+|+.+.. + .
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence 478999999988873 4555666787 899999998 87777777776653 5888999986532 0 0
Q ss_pred -CCceeEEEEec
Q 016992 187 -VTKVDIIISEW 197 (379)
Q Consensus 187 -~~~~D~Iv~~~ 197 (379)
.+..|++|.+.
T Consensus 83 ~~g~idilvnnA 94 (259)
T d1xq1a_ 83 FGGKLDILINNL 94 (259)
T ss_dssp HTTCCSEEEEEC
T ss_pred hCCCcccccccc
Confidence 26789999864
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=86.71 E-value=0.6 Score=37.19 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=62.8
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC--------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (379)
++|--||+|+= .++..++..|. +|+.+|.++ .++.+.+.+... + +. +++... .+...
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-- 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-LSYGD-- 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-SSSTT--
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc-ccccc--
Confidence 46888999873 44556666776 899999999 888776665432 1 10 112221 12221
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
-...|+|+=. + .........++..+.++++|+-.|.-++.++
T Consensus 81 --~~~adlViEa-v---~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l 122 (186)
T d1wdka3 81 --FGNVDLVVEA-V---VENPKVKQAVLAEVENHVREDAILASNTSTI 122 (186)
T ss_dssp --GGGCSEEEEC-C---CSCHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred --ccccceeeee-e---cchHHHHHHHHHHHHhhcCCCeeEEeccccc
Confidence 2567988843 2 3333566789999999999998887544443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.15 E-value=1 Score=37.64 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHH-HHHHHHHcCCCCcEEEEEcceeecc-----C-----
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVITVLKGKIEEIE-----L----- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 185 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.+. .++. +++..+..+ .++.++.+|+.+.. +
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999998887 34556666787 899999987 5544 444445555 35888899987642 0
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+++|++|.+.
T Consensus 80 ~~g~iDiLVnnA 91 (251)
T d1vl8a_ 80 KFGKLDTVVNAA 91 (251)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 125799999864
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.77 E-value=0.66 Score=38.99 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcceeecc----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.+. ..+.+++..+..+ .++.++.+|+.+.. -
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999998776 34555566677 899999987 4455555555555 45888999987643 0
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 84 ~~g~iDilVnnA 95 (260)
T d1h5qa_ 84 DLGPISGLIANA 95 (260)
T ss_dssp HSCSEEEEEECC
T ss_pred HhCCCcEecccc
Confidence 136899999864
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.71 E-value=0.99 Score=37.46 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCce
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+. . ..+..++.|+.+.. -..++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKE---C---PGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 47899999998877 34555566676 999999987 55444332 2 23678888887643 123689
Q ss_pred eEEEEec
Q 016992 191 DIIISEW 197 (379)
Q Consensus 191 D~Iv~~~ 197 (379)
|++|.+.
T Consensus 76 DilVnnA 82 (242)
T d1cyda_ 76 DLLVNNA 82 (242)
T ss_dssp SEEEECC
T ss_pred eEEEECC
Confidence 9999763
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=85.49 E-value=0.85 Score=35.59 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=55.5
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC-CC-CcEE----EEEcceeeccCCCCceeEEE
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-FS-NVIT----VLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~-~~-~~i~----~~~~d~~~~~~~~~~~D~Iv 194 (379)
++|--||+|.. .++..+++.|. +|+.+|.++ .++.+++.-.... .+ .... .+..|..+. ...+|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence 57888999974 44555666776 999999998 7766554311000 00 0000 011111111 14689998
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.-.. ......++..+...|+++..++
T Consensus 78 i~v~------~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 78 IVVP------AIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp ECSC------GGGHHHHHHHHGGGCCTTCEEE
T ss_pred EEEc------hhHHHHHHHHhhhccCCCCEEE
Confidence 6422 2456788899999999988766
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.29 E-value=1.1 Score=38.04 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHH-HHHHHcCCCCcEEEEEcceeecc----------
Q 016992 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAK-QIVEANGFSNVITVLKGKIEEIE---------- 184 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (379)
..+|+++|--|++.| .++..+++.|+ +|+.+|.+. .++.+. +.....+ .++.++.+|+.+..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 357899999998876 34445555676 999999988 665544 4444444 45888888887643
Q ss_pred CCCCceeEEEEec
Q 016992 185 LPVTKVDIIISEW 197 (379)
Q Consensus 185 ~~~~~~D~Iv~~~ 197 (379)
...+..|+++...
T Consensus 99 ~~~g~iDilvnnA 111 (294)
T d1w6ua_ 99 KVAGHPNIVINNA 111 (294)
T ss_dssp HHTCSCSEEEECC
T ss_pred hhccccchhhhhh
Confidence 1136789999753
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.97 E-value=1.2 Score=37.15 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=51.4
Q ss_pred CEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CCCCc
Q 016992 124 KVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPVTK 189 (379)
Q Consensus 124 ~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 189 (379)
+.+|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -..++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 35678888776 33445556676 899999999 8887777777766 45888999987643 01368
Q ss_pred eeEEEEec
Q 016992 190 VDIIISEW 197 (379)
Q Consensus 190 ~D~Iv~~~ 197 (379)
.|++|.+.
T Consensus 79 iDilVnnA 86 (255)
T d1gega_ 79 FDVIVNNA 86 (255)
T ss_dssp CCEEEECC
T ss_pred ccEEEecc
Confidence 99999763
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=1.9 Score=36.88 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC---CCCcEEEEEcceeeccC-------
Q 016992 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIEL------- 185 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~------- 185 (379)
..+|+++|--|++.| .++..+++.|+ +|+.+|.+. .++.+.+.+.... ...++.++.+|+.+...
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 358899999998887 23445556676 899999998 7766655555431 12468889999876431
Q ss_pred ---CCCceeEEEEec
Q 016992 186 ---PVTKVDIIISEW 197 (379)
Q Consensus 186 ---~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 88 ~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 88 TLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCeEEEEeec
Confidence 125789999864
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.16 E-value=1.2 Score=37.21 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCCc---hHHHHHHHcCCCEEEE-EecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------
Q 016992 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYA-VECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------- 184 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~-vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (379)
...|++||-.|++.| .++..+++.|+ +|+. ...++ .++.+.+.+...|. ++.++.+|+.+..
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHH
Confidence 357899999887665 44445556677 6665 45666 78888888888774 5889999987642
Q ss_pred CCCCceeEEEEec
Q 016992 185 LPVTKVDIIISEW 197 (379)
Q Consensus 185 ~~~~~~D~Iv~~~ 197 (379)
...+..|++|.+.
T Consensus 80 ~~~g~idilinna 92 (259)
T d1ja9a_ 80 SHFGGLDFVMSNS 92 (259)
T ss_dssp HHHSCEEEEECCC
T ss_pred HHcCCCcEEEecc
Confidence 0135799999764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=82.98 E-value=2.1 Score=35.36 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCC--c---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------
Q 016992 121 FKDKVVLDVGAGT--G---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------- 184 (379)
Q Consensus 121 ~~~~~VLDlGcG~--G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (379)
.+|++||-.|+++ | .++..+++.|+ +|+.++.++ ..+.+.+.....+- ..+...|..+..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHhh
Confidence 5789999999876 5 25566777787 899999998 88888777776653 344455543321
Q ss_pred CCCCceeEEEEec
Q 016992 185 LPVTKVDIIISEW 197 (379)
Q Consensus 185 ~~~~~~D~Iv~~~ 197 (379)
......|+++...
T Consensus 79 ~~~~~~d~~v~~a 91 (258)
T d1qsga_ 79 KVWPKFDGFVHSI 91 (258)
T ss_dssp TTCSSEEEEEECC
T ss_pred hcccccceEEEee
Confidence 2247789998763
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=82.51 E-value=2.8 Score=32.46 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=48.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la-~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
|.+.+.+.....++++||-+|||.-.-+...+ ..+..+|+.+.-+. .++...+.+... .++.....+.. ..
T Consensus 5 f~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~----~~ 77 (171)
T d1p77a1 5 LVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI----PL 77 (171)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC----CC
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhccc----cc
Confidence 33445443445688999999998643333222 23567999999888 655555555432 23555544432 23
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
..+|+||...
T Consensus 78 ~~~diiIN~t 87 (171)
T d1p77a1 78 QTYDLVINAT 87 (171)
T ss_dssp SCCSEEEECC
T ss_pred cccceeeecc
Confidence 6799999753
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.40 E-value=1.4 Score=36.60 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+. +++.++++|+.+..- .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHH
Confidence 57899999998887 34555666677 899999998 6665544332 568889999876420 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+..|++|.+.
T Consensus 78 ~g~idilinnA 88 (244)
T d1nffa_ 78 FGGLHVLVNNA 88 (244)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCeEEEECC
Confidence 25789999764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.25 E-value=1.6 Score=36.31 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+. ...++.++.+|+.+... .
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47899999998776 33455566677 899999998 7766655543 23568999999876430 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 80 ~G~iDiLVnnA 90 (251)
T d1zk4a1 80 FGPVSTLVNNA 90 (251)
T ss_dssp HSSCCEEEECC
T ss_pred hCCceEEEecc
Confidence 26789999864
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=82.22 E-value=2.8 Score=34.54 Aligned_cols=70 Identities=24% Similarity=0.331 Sum_probs=46.3
Q ss_pred EEEEEcCCCc---hHHHHHHHcCCCEEEEEec-HH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CCCCc
Q 016992 125 VVLDVGAGTG---ILSLFCAKAGAAHVYAVEC-SQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPVTK 189 (379)
Q Consensus 125 ~VLDlGcG~G---~~~~~la~~g~~~v~~vD~-s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 189 (379)
.||--|++.| .++..+++.|+ +|+..+. ++ .++.+.+.++..+ .++.++.+|+.+.. -..++
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 5677777665 23344455576 7777665 55 7777777777666 46888999987642 01367
Q ss_pred eeEEEEec
Q 016992 190 VDIIISEW 197 (379)
Q Consensus 190 ~D~Iv~~~ 197 (379)
.|++|.+.
T Consensus 80 iDiLVnnA 87 (244)
T d1edoa_ 80 IDVVVNNA 87 (244)
T ss_dssp CSEEEECC
T ss_pred CCcccccc
Confidence 99999864
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.03 E-value=1.6 Score=36.61 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+......- ..+.++..|..+... .
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 47899999999987 44555666686 999999998 77766555444332 457777777654321 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+..|+++.+.
T Consensus 90 ~g~~~~li~na 100 (269)
T d1xu9a_ 90 MGGLDMLILNH 100 (269)
T ss_dssp HTSCSEEEECC
T ss_pred hCCcccccccc
Confidence 25678888753
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=81.11 E-value=1.8 Score=36.20 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
.+|+++|--|++.| .++..+++.|+ +|+.++.+ + .++.+.+.++..+ .++.++.+|+.+...
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 47899999998887 34455566676 89999876 4 6676666677766 458889999876420
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..++.|++|.+.
T Consensus 82 ~~G~iDiLVnnA 93 (261)
T d1geea_ 82 EFGKLDVMINNA 93 (261)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 125789999864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=80.96 E-value=1.6 Score=32.06 Aligned_cols=82 Identities=9% Similarity=0.103 Sum_probs=51.1
Q ss_pred CCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEecCccccCC
Q 016992 131 AGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFLLF 204 (379)
Q Consensus 131 cG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l~~ 204 (379)
||.|..+..+++ .-...|+.+|.++ .++.++. ..+.++.+|+.+.. ..-.+++.+++..-
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~------ 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVNLE------ 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS------
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEecc------
Confidence 456778888888 3234788999999 7766543 23788999987643 22367888886321
Q ss_pred hhhHHHHHHHHHhcccCCEEEE
Q 016992 205 ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 205 ~~~~~~~l~~~~~~LkpgG~li 226 (379)
.......+-...+.+.|...++
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii 93 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRII 93 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEE
T ss_pred chhhhHHHHHHHHHHCCCceEE
Confidence 1222233334456677876655
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.27 E-value=1.7 Score=36.09 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.. .++.++.+|+.+... .
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999998877 34455566677 899999998 666554332 247888889876420 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (250)
T d1ydea1 77 FGRLDCVVNNA 87 (250)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEecc
Confidence 26789999864
|