Citrus Sinensis ID: 017005

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQSKGFFIWCP
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccHHEEEcccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHcHccccccccccccHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
malhlfkpkhrsltnpslihlfstsqndnndnnnnysnsslNSYFsdvkaslrkqtppnqttsssssssrgppskvaSLEEIRRNLAEFrqrstvpppiesnstesqsqsqtqsqsqsQHISFQELYKRntvnetlaskpsgkpSFEAIRESLRQMRARsnndnnnnnrgngvknsdplslknftntlrmkpaddnahrviggsqelpalvfgkeKKEEEKAVELERMKTDFVKMYSFEELGDKLKKlrpegleggfSLRELNERLMRLRVMEMnesnskigaGTISALRSSLARIQIEKEEKARVQRINILegfggtpeyllhppkehlvekyfhpdnmssAEKMKIELAKVREEFkmsesdcgsarvqskgffiwcp
Flexible Loop (DISEMBL)
malhlfkpkhrsltnpSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQtppnqttsssssssrgppskVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVnetlaskpsgkpsfEAIRESLRQMRArsnndnnnnnrgngvknsdplSLKNFTNTLRMKPADDNAHRVIGGsqelpalvfgkekkEEEKAVElermktdfvkmySFEELGDKLKKlrpegleggfslrELNERLMRLRVMEMnesnskigagtiSALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKmsesdcgsarvqskgffiwcp
Low Complexity Region (SEG)
MALHLFKPKHRSLTNPSLIHLFstsqndnndnnnnysnsslnsyfsdVKASLRKQTPPNQTTsssssssRGPPSKVASLEEIRRNLAEFRQRSTVPPPIesnstesqsqsqtqsqsqsqHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRArsnndnnnnnrgngvknsdPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGkekkeeekAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSlrelnerlmrlrvmemneSNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQSKGFFIWCP
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************************************************************************************TDFVKMYSFEELG**************************************************LARIQIE***KARVQRINILEGFGGTPEYLLHPPKEHLVEKYF************************************KGFFIWC*
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************************************************MYSFEELGDKLKKLRPEGLEGGFSLRELNER**********************ALRSS*******************LEGFGGTPEYLLHPPKEHLVE*Y****************A*****F******CGSARVQSKGFFIWCP
Disordered Region (DISEMBL)
********KHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKAS**************************SLEEIRRNLAEFRQRSTVP*************************SFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREE***********RVQSKGFFIWCP
Disordered Region (DISPRO)
***********SLTNPSLI***************************D*KASLRK********************************A*FRQRS********************************************************************************************NT****************************************MKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQSKGFFIWCP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSxxxxxxxxxxxxxxxxxxxxxCGSARVQSKGFFIWCP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
255579194	461	structural constituent of ribosome, puta	0.926	0.761	0.481	2e-82
449468960	449	PREDICTED: uncharacterized protein LOC10	0.912	0.770	0.480	8e-82
449520783	449	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.907	0.766	0.478	3e-80
224072669	470	predicted protein [Populus trichocarpa]	0.931	0.751	0.468	2e-78
359489144	443	PREDICTED: uncharacterized protein LOC10	0.907	0.776	0.497	2e-72
30699526	414	S15/NS1, RNA-binding protein [Arabidopsi	0.878	0.804	0.411	8e-56
297842803	413	ribosomal protein S15 family protein [Ar	0.854	0.784	0.401	6e-54
147770456	679	hypothetical protein VITISV_013916 [Viti	0.585	0.326	0.531	7e-54
18394286	419	S15/NS1, RNA-binding protein [Arabidopsi	0.873	0.789	0.376	3e-47
297844488	434	ribosomal protein S15 family protein [Ar	0.881	0.769	0.370	7e-43

>gi|255579194|ref|XP_002530443.1| structural constituent of ribosome, putative [Ricinus communis] gi|223529988|gb|EEF31913.1| structural constituent of ribosome, putative [Ricinus communis]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 198/411 (48%), Positives = 261/411 (63%), Gaps = 60/411 (14%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTS--QNDN----------NDNNNNYSNSSLNSYFSDV 48
           MAL + +PKHRSLTNPSLIHLFSTS  QNDN                   +S +SYFSDV
Sbjct: 1   MALSITRPKHRSLTNPSLIHLFSTSSSQNDNASLSPPSQEQQQQQQQQQQTSFSSYFSDV 60

Query: 49  KASLRKQT-----------PPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPP 97
           KASL++Q            PP +T +S S     P SK+ASLEEI++NLAE+R RS+VPP
Sbjct: 61  KASLKQQQQDPQSQNKPNFPPLRTPASISK----PTSKIASLEEIKKNLAEYRLRSSVPP 116

Query: 98  PIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNET-----------LASKP-SGKPS 145
           P ES+S    +    Q Q Q+QHISFQ+LYKRN + ++            ++KP SG+ S
Sbjct: 117 PTESSSF--NTTFSDQQQRQTQHISFQDLYKRNMIGKSENFSGSDNGSNKSNKPASGRFS 174

Query: 146 FEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRM-KPADDNAHRVIGGS 204
            +AIRESLRQM++ +N   + + R +G    D +S     ++L++ K  +     V+GGS
Sbjct: 175 MDAIRESLRQMKSNANTKIDGSRRNDG----DAMSFSGSRSSLKLSKEIESLKSSVVGGS 230

Query: 205 QELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPE---GLEGGFSLRE 261
             +P+LV   +++  +       M T+F K YS+ ELG+KL  LR E   G +G FSL E
Sbjct: 231 GGMPSLVSVNKQRNVQGG-----MSTEFRKAYSYGELGEKLMSLRSEVKEGEKGWFSLEE 285

Query: 262 LNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARV--QRINILEGFGGTP 319
           LNERL +LR +E  E  S+IG G  S +R SL +++ EK EK+ +  QR+N+   F  TP
Sbjct: 286 LNERLRKLREIEEKEYESRIG-GYYSGIRESLIKLKDEKAEKSSIPIQRLNL---FSTTP 341

Query: 320 EYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
           +++ +PPKEHLVEKYFHPDNMSSAEKMKI L+KVREEFKMSESDCGSARVQ
Sbjct: 342 DFMQYPPKEHLVEKYFHPDNMSSAEKMKIGLSKVREEFKMSESDCGSARVQ 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468960|ref|XP_004152189.1| PREDICTED: uncharacterized protein LOC101212028 [Cucumis sativus]

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 196/408 (48%), Positives = 269/408 (65%), Gaps = 62/408 (15%)

Query: 1   MALHL-FKPKH-RSLTNPSLIHLFSTSQNDNNDNNNNYSN-------SSLNSYFSDVKAS 51
           MAL L FKPK  ++LTNPSLIHLFS++ +  +D N+  ++       SS++SY SDV+A 
Sbjct: 1   MALQLTFKPKTPKTLTNPSLIHLFSSNSSAPSDPNDETADTSTASPRSSISSYLSDVRAR 60

Query: 52  LRKQTPPNQTTSSSSSSSR-------------GPPSKVASLEEIRRNLAEFRQRSTVPPP 98
           L++    +Q  SSS S+ R              P SK ASLEEIR+NL+EFR RS+VPPP
Sbjct: 61  LKQ----DQQFSSSPSARRPADSFTSPFNRSTSPASKAASLEEIRKNLSEFRNRSSVPPP 116

Query: 99  IESNSTESQSQSQTQSQSQSQHISFQELYKRNTV------NETLASKPSGK---PSFEAI 149
            +  ST S S S  +       ISFQ+LYK N++      N+  A+   G      F++I
Sbjct: 117 SDLGSTPSSSSSWQRG------ISFQDLYKNNSMRKGEDSNDAPANSTGGGRIGMPFDSI 170

Query: 150 RESLRQMRARSNNDNNNNNRG--NGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQEL 207
           +ESLR++         ++ RG  + +K+ D LSL  F ++L++KP+D     V+GG++ L
Sbjct: 171 KESLRKV---------SSARGMQSELKSGDSLSLSAFKDSLKLKPSDP----VMGGTERL 217

Query: 208 PALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEG--GFSLRELNER 265
           P  VFGKE KE++    +  +KT+FVKMYS++ELG+KL+ LRP+  +G   FSL ELN+R
Sbjct: 218 PVSVFGKEMKEKKDGKNVG-LKTEFVKMYSYDELGNKLRNLRPDKEKGKNWFSLTELNDR 276

Query: 266 LMRLRVMEMNESNSKIGAGTISALRSSLARIQI---EKEEKARVQRINILEGFGGTPEYL 322
           L++LR ME  E+ S+IG  +   LR+SL +++I   E+E+KA +QR++I+     TP Y+
Sbjct: 277 LVKLRTMEEKETESRIGGISFQDLRASLMQMKISDDEREKKATLQRLDIMGQLVRTPNYM 336

Query: 323 LHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
           L PP EHLVEKYFHPDNMSSAEKMKIELAKVRE+FKMSESDCGSARVQ
Sbjct: 337 LEPPNEHLVEKYFHPDNMSSAEKMKIELAKVREKFKMSESDCGSARVQ 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520783|ref|XP_004167412.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229401 [Cucumis sativus]

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 196/410 (47%), Positives = 268/410 (65%), Gaps = 66/410 (16%)

Query: 1   MALHL-FKPKH-RSLTNPSLIHLFSTSQNDNNDNNNNYSN-------SSLNSYFSDVKAS 51
           MAL L FKPK  ++LTNPSLIHLFS++ +  +D N+  ++       SS++SY SDV+A 
Sbjct: 1   MALQLTFKPKTPKTLTNPSLIHLFSSNSSAPSDPNDETADTSTASPRSSISSYLSDVRAR 60

Query: 52  LRKQTPPNQTTSSSSSSSR-------------GPPSKVASLEEIRRNLAEFRQRSTVPPP 98
           L++    +Q  SSS S+ R              P SK ASLEEIR+NL+EFR RS+VPPP
Sbjct: 61  LKQ----DQQFSSSPSARRPADSFTSPFNRSTSPASKAASLEEIRKNLSEFRNRSSVPPP 116

Query: 99  IESNSTESQSQSQTQSQSQSQHISFQELYKRNTV------NETLASKPSGK---PSFEAI 149
            +  ST S S S  +       ISFQ+LYK N++      N+  A+   G      F++I
Sbjct: 117 SDLGSTPSSSSSWQRG------ISFQDLYKNNSMRKGEDSNDAPANSTGGGRIGMPFDSI 170

Query: 150 RESLRQMRARSNNDNNNNNRG--NGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQEL 207
           +ESLR++         ++ RG  + +K+ D LSL  F ++L++KP+D     V+GG++ L
Sbjct: 171 KESLRKV---------SSARGMQSELKSGDSLSLSAFKDSLKLKPSDP----VMGGTERL 217

Query: 208 PALVFGKEKKEEE-KAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEG--GFSLRELNE 264
           P  VFGKE KE++ K V L   KT+FVKMYS++ELG+KL+ LRP+  +G   FSL ELN+
Sbjct: 218 PVSVFGKEMKEKDGKNVGL---KTEFVKMYSYDELGNKLRNLRPDKEKGKNWFSLTELND 274

Query: 265 RLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKAR----VQRINILEGFGGTPE 320
           RL++LR ME  E+ S+IG  +   LR+SL +++I  +E+ +    +QR++I+     TP 
Sbjct: 275 RLVKLRTMEEKETESRIGGISFQDLRASLMQMKISDDEREKKRHVIQRLDIMGQLVRTPN 334

Query: 321 YLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
           Y+L PP EHLVEKYFHPDNMSSAEKMKIELAKVRE+FKMSESDCGSARVQ
Sbjct: 335 YMLEPPNEHLVEKYFHPDNMSSAEKMKIELAKVREKFKMSESDCGSARVQ 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072669|ref|XP_002303830.1| predicted protein [Populus trichocarpa] gi|222841262|gb|EEE78809.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/418 (46%), Positives = 256/418 (61%), Gaps = 65/418 (15%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNN-----------------NYSNSSLNS 43
           MAL L +P+HRSL+NP LIHLFS+S    +D+ +                     SSL+S
Sbjct: 1   MALSLSRPRHRSLSNPYLIHLFSSSSTTPSDDPSVSEPQQQQQQQQQQQQQQQQKSSLSS 60

Query: 44  YFSDVKASLRKQTPPNQTTS--------SSSSSSRGPPSKVASLEEIRRNLAEFRQRSTV 95
           YF+DVKASL++Q P N+  S        S++ S   P S +AS +EIR+NL+EFR RS+ 
Sbjct: 61  YFNDVKASLKQQNPENRPNSPPLSKPSYSTNQSFSKPTSNIASFDEIRKNLSEFRLRSSD 120

Query: 96  PPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETL------------ASKP-SG 142
           PPP E NS  SQ  S        Q ISFQELYKRN +  +             A++P SG
Sbjct: 121 PPPREPNSAPSQEPSS------KQQISFQELYKRNVLARSTGGSGTTQSGGINANQPISG 174

Query: 143 KPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDN----AH 198
           + +F+AIRESLRQM+     DNNN   G G      LS  +F    ++KP ++N      
Sbjct: 175 RLTFDAIRESLRQMKG--GGDNNNTAAGRG--RVGELSFSSF----KLKPGNENEPMNKS 226

Query: 199 RVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPE---GLEG 255
            +IGG++ LP+ VFG+E + E  A     M T+FVKMYS  ELGDKL+ LRP+   G +G
Sbjct: 227 TIIGGTEGLPSAVFGREMEGEGGAKG--EMSTEFVKMYSHGELGDKLRILRPKVKRGEKG 284

Query: 256 GFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKA---RVQRINIL 312
            F+L+ELNERL +LR ME  E+ S+I   +   LR SL +++   +EKA    VQR+N++
Sbjct: 285 WFTLKELNERLRKLREMEEKETESRISGVSFRDLRESLVKLKASSDEKAIKNSVQRLNLM 344

Query: 313 EGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
                +    L PPK+HLVEKYFHPDNMSS+EKMKIELA+VR+EFKMSESDCGSARVQ
Sbjct: 345 GQLRAS-NVTLQPPKKHLVEKYFHPDNMSSSEKMKIELARVRDEFKMSESDCGSARVQ 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489144|ref|XP_002264817.2| PREDICTED: uncharacterized protein LOC100267570 [Vitis vinifera]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 193/388 (49%), Positives = 250/388 (64%), Gaps = 44/388 (11%)

Query: 8   PKHRSLTNPSLIH-LFSTSQNDNNDNNNNYSNSSLNS------------YFSDVKASLRK 54
           P++RS  NPS IH +FS+S   N+ +NN  S  S +S            YF+DVKASL++
Sbjct: 10  PRNRS-RNPSFIHRVFSSSSTSNDADNNTPSPPSSSSSSSSSSSSSLSSYFNDVKASLKQ 68

Query: 55  Q-TPPNQTTSSSSSSSRGPPS----KVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQ 109
              PP +++S  SSSS         K+ASLEEIR+NL+EFR RS+VP           + 
Sbjct: 69  PPQPPRKSSSLFSSSSPSSSPPLSSKIASLEEIRKNLSEFRSRSSVP-----------NP 117

Query: 110 SQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNR 169
           S +Q  S S  ISFQELYKRN + +   S P GK SF+AIRESL+Q+R  S+ +      
Sbjct: 118 SPSQQSSSSSPISFQELYKRNVIPKPEDS-PKGKLSFDAIRESLKQLRPSSSAEG----- 171

Query: 170 GNGVKNSDPLSLKNFTNTLRMKPADDNAHR---VIGGSQE-LPALVFGKEKKEEEKAVEL 225
           G     +D LSL  F ++LR++P D  A +   VIGGS + LP  VFGK+ ++ ++A E 
Sbjct: 172 GQTKGKTDVLSLSAFQDSLRLRPVDSGATKSSVVIGGSDDALPMSVFGKDIRDRKEA-ES 230

Query: 226 ERMKTDFVKMYSFEELGDKLKKLRPE-GLEGGFSLRELNERLMRLRVMEMNESNSKIGAG 284
             MKT FVK Y  EELG KL++LRPE G E  FSL+ELNERLM+LR ME  E+ S I   
Sbjct: 231 TAMKTSFVKWYGPEELGKKLRELRPETGAESCFSLKELNERLMKLREMEEKETESSIPGV 290

Query: 285 TISALRSSLARIQIEKEEKAR--VQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSS 342
           +   LR SL R+++  +EK +     ++IL   GGTP ++L PPKEHLVE+YFHPDNMSS
Sbjct: 291 SFKDLRESLVRLRMADDEKTKKSSSELDILGRLGGTPSFMLAPPKEHLVEQYFHPDNMSS 350

Query: 343 AEKMKIELAKVREEFKMSESDCGSARVQ 370
           AEK+K+EL KVR+EFKMSESDCGSARVQ
Sbjct: 351 AEKLKVELKKVRDEFKMSESDCGSARVQ 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30699526|ref|NP_849914.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana] gi|6730725|gb|AAF27115.1|AC018849_3 unknown protein; 13226-11448 [Arabidopsis thaliana] gi|332198307|gb|AEE36428.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana]

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 159/386 (41%), Positives = 214/386 (55%), Gaps = 53/386 (13%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQ-------NDNNDNNNNYSNSS----LNSYFSDVK 49
           MALHL +PK R  +NPSLIHLFSTS         D N++N   S SS    ++SYFS ++
Sbjct: 1   MALHLARPKQRLHSNPSLIHLFSTSSSSSSSSPQDGNESNEQPSQSSSDYKISSYFSGIR 60

Query: 50  ASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQ 109
           +SL KQT               P + ++  ++IRRNL EFR R+T PPP +         
Sbjct: 61  SSL-KQTQSQDGKRQFVRFDAKPQNSLSGNQDIRRNLNEFRSRATAPPPRD--------- 110

Query: 110 SQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNR 169
                         Q+L+K+N ++++  ++         I+ +LRQMR +          
Sbjct: 111 -------------MQDLFKQNVLSKSGGTRRIEGVPLTNIKANLRQMRPQ---------- 147

Query: 170 GNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQE-LPALVFGKEKKEEEKAVELERM 228
                 S   +L    N ++    D+    VIGG+ E LP  V GKE +EE+   E   M
Sbjct: 148 -QATTESKWANLSGIQNIMKTNINDNIRSNVIGGAAEGLPHSVVGKELEEEDVTEE--EM 204

Query: 229 KTDFVKMYSFEELGDKLKKLRPEGL--EGGFSLRELNERLMRLRVMEMNE--SNSKIGAG 284
           K++F+K Y   ELG+KL+  RPEG   EG FSL+ELN+RL++LR ME  +    S +   
Sbjct: 205 KSEFIKSYDPIELGEKLRLYRPEGKKEEGWFSLQELNQRLVKLRAMEEEQFQKTSIVHPS 264

Query: 285 TISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAE 344
            ++ LRS   +   + ++    Q  NI     GTP+Y+L PPK+ LVE YFHPDNMSSAE
Sbjct: 265 FVNNLRSEFHKF-TKAQKSDPFQNTNIWGVLSGTPKYMLEPPKDQLVETYFHPDNMSSAE 323

Query: 345 KMKIELAKVREEFKMSESDCGSARVQ 370
           KMKIELAKVREEFKMSESDCGSARVQ
Sbjct: 324 KMKIELAKVREEFKMSESDCGSARVQ 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842803|ref|XP_002889283.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335124|gb|EFH65542.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 158/394 (40%), Positives = 213/394 (54%), Gaps = 70/394 (17%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNNYS--------------NSSLNSYFS 46
           MALHL +PK R  +NPSLIHLFSTS +   D N +                +  ++SYFS
Sbjct: 1   MALHLARPKQRLHSNPSLIHLFSTSSSSPQDGNESSEQPSQSPSSSSSSPPDFKISSYFS 60

Query: 47  DVKASLRKQTPPNQTTSSSSSSSRGPPSKVASL---EEIRRNLAEFRQRSTVPPPIESNS 103
            +++SL KQT P              P+   SL   ++IRRNL EFR R+  PPP +   
Sbjct: 61  GIRSSL-KQTQPQDGRRQFVRFDAKAPNPATSLSGNQDIRRNLNEFRSRAVAPPPRD--- 116

Query: 104 TESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNND 163
                              +Q++YK+N + ++  S  + K     I+E+LRQMR ++  +
Sbjct: 117 -------------------WQDIYKQNVLPKSGDSYGTRKIDGTNIKENLRQMRPQATTE 157

Query: 164 NNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEK-A 222
           +      +G++N+   +LK F   LR          VIGG   LP  VF KE ++ +K  
Sbjct: 158 SKWATL-SGLQNTMKTNLK-FNENLR--------SNVIGGGGGLPYSVFEKELEQGQKNE 207

Query: 223 VELERMKTDFVKMYSFEELGDKLKKLRPEGLE--GGFSLRELNERLMRLRVMEMN--ESN 278
            E E MK++F+K Y   ELG+KL+  RP G +  G FSL ELN+RL++LR ME    E  
Sbjct: 208 NETEEMKSEFIKSYDPIELGEKLRLYRPVGKKELGWFSLNELNQRLVKLRAMEEEQFERT 267

Query: 279 SKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTP--EYLLHPPKEHLVEKYFH 336
             +    +  LRS+      E E+  + Q+          P  +Y+L PPK+ LVE YFH
Sbjct: 268 RTLHPSFVKELRSA-----YENEKAVKAQK--------SVPCSKYMLEPPKDQLVETYFH 314

Query: 337 PDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
           PDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ
Sbjct: 315 PDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770456|emb|CAN71535.1| hypothetical protein VITISV_013916 [Vitis vinifera]

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 165/239 (69%), Gaps = 17/239 (7%)

Query: 140 PSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHR 199
           P GK SF+AIRESL+Q+R  S+ +      G     +D LSL  F ++LR++P D  A +
Sbjct: 117 PKGKLSFDAIRESLKQLRPSSSAEG-----GQTKGKTDVLSLSAFQDSLRLRPVDSGATK 171

Query: 200 ---VIGGSQE-LPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPE-GLE 254
              VIGGS + LP  VFGK+ ++ ++A E   MKT FVK Y  EELG KL++LRPE G E
Sbjct: 172 SSVVIGGSDDALPMSVFGKDIRDRKEA-ESTAMKTSFVKWYGPEELGKKLRELRPETGAE 230

Query: 255 GGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQI---EKEEKARVQRINI 311
             FSL+ELNERLM+LR ME  E+ S I   +   LR SL R+++   EK +K+ +QR++I
Sbjct: 231 SCFSLKELNERLMKLREMEEKETESSIPGVSFKDLRESLVRLRMADDEKTKKSSIQRLDI 290

Query: 312 LEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
           L   GGTP ++L PPKEHLVE+    +NMSSAEK+K+EL KVR+EFKMSESDCGSARVQ
Sbjct: 291 LGRLGGTPSFMLAPPKEHLVEQ---ANNMSSAEKLKVELKKVRDEFKMSESDCGSARVQ 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394286|ref|NP_563982.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana] gi|8927660|gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain [Arabidopsis thaliana] gi|13605577|gb|AAK32782.1|AF361614_1 At1g15810/F7H2_23 [Arabidopsis thaliana] gi|22137170|gb|AAM91430.1| At1g15810/F7H2_23 [Arabidopsis thaliana] gi|332191247|gb|AEE29368.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 207/393 (52%), Gaps = 62/393 (15%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNN-----------YSNSSLNSYFSDVK 49
           MALHL +   R  +N SLI  FS S +D+     N             + S +S   D+K
Sbjct: 1   MALHLARRHQRLPSNTSLIRFFSNSSSDSPPQFTNAPVEKPSQSPSSPSPSDSSPIFDIK 60

Query: 50  ASLRKQTPPNQTT-------SSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESN 102
            +L+ +    Q         S + S +RG  S   +L    +NLA+F++RSTVPPP +S 
Sbjct: 61  NTLKLKLQNQQEQGRKPFDRSDAQSQNRGSTSFSQNLG---KNLAKFQRRSTVPPPRDSG 117

Query: 103 STESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEA--IRESLRQMRARS 160
             +  S           +IS   LYK++    +   + S    F +  + E+L+ +R + 
Sbjct: 118 GVQPPS-----------YISLAGLYKQSAATNSSDPRNSKAQGFNSNTVSETLKNLRTQI 166

Query: 161 NNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEE 220
           N  NN   RG GV       L +F +T+                + LP  +F  +  E +
Sbjct: 167 NTSNNMGKRG-GV-------LGSFKSTV---------------GEALPKYLFETQMDESK 203

Query: 221 KA-VELERMKTDFVKMYSFEELGDKLKKLRPEG--LEGGFSLRELNERLMRLRVMEMNES 277
            +  E E   T+F+  Y+ EELG+KL+ LRPEG   EG FSL ELN+RL++LR +E  E+
Sbjct: 204 GSEGETEEAMTEFLMFYNEEELGEKLRTLRPEGEKKEGWFSLEELNQRLVKLRQVEEKEA 263

Query: 278 NSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHP 337
             +      + LR+ ++  + E  E +  Q + I+   GG PEY L PPKE LV+ YFHP
Sbjct: 264 QYR--TKNFAQLRNVISSFKNENSEASSQQNVAIMGHLGGIPEYKLLPPKEDLVDTYFHP 321

Query: 338 DNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
           DNMSSAEKMKIEL+KVREEFKMSESDCGSARVQ
Sbjct: 322 DNMSSAEKMKIELSKVREEFKMSESDCGSARVQ 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844488|ref|XP_002890125.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335967|gb|EFH66384.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 150/405 (37%), Positives = 208/405 (51%), Gaps = 71/405 (17%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQ--------NDNNDNNNNYSNSSLNSYFS------ 46
           MALHL +   R  +NPSLI  FS S         N   +N +   +S   S  S      
Sbjct: 1   MALHLARRHQRLPSNPSLIRFFSNSSSESSPKVLNTPVENPSQSPSSPPPSDSSYSSPSF 60

Query: 47  DVKASLRKQTPPNQ-------TTSSSSSSSRGPPS------KVASLEEIRRNLAEFRQRS 93
           D+  +L+++    Q       T S + S SRG  S      +V+S  ++  NLA+F++RS
Sbjct: 61  DINTTLKQKLQNQQEQGRKQFTRSDTQSQSRGSTSFAQNQSRVSS-HDLGNNLAKFQRRS 119

Query: 94  TVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEA--IRE 151
           TVPPP +S   +S  Q           IS + LYK++T   +   +      F +  + E
Sbjct: 120 TVPPPRDSGGVQSPPQ-----------ISLEGLYKQSTATNSSDPRNWKAHGFNSSTVSE 168

Query: 152 SLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALV 211
           +L+ +R ++N  +N   +G          L +F +T                 + LP  +
Sbjct: 169 TLKNLRTQTNTSSNMGKKGG--------FLGSFKSTT--------------AGEALPISL 206

Query: 212 FGKEKKEEEKAVELERMKTD---FVKMYSFEELGDKLKKLRPEGL--EGGFSLRELNERL 266
           F  E K +E+ V     +     F+  Y+ EELG+KL+ LRPEG   EG FSL+ELN+RL
Sbjct: 207 F--ETKMDEREVREGETEEMMTEFLTFYNEEELGEKLRMLRPEGEKEEGWFSLQELNQRL 264

Query: 267 MRLRVMEMNESNSKI-GAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHP 325
           ++LR +E  E+  +     T+  + SS+     +K E    Q   I+   GG PEY L P
Sbjct: 265 VKLRQVEEKEAQYRTKNFATLRNVISSIKNDNDKKNEAFSQQNSAIMGHLGGIPEYKLLP 324

Query: 326 PKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
           PKE LV+ YFHPDNMSSAEKMKIEL KVREEFKMSESDCGSARVQ
Sbjct: 325 PKEDLVDTYFHPDNMSSAEKMKIELTKVREEFKMSESDCGSARVQ 369

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2198918	414	AT1G80620 [Arabidopsis thalian	0.609	0.557	0.397	2.3e-44
TAIR|locus:2036229	419	AT1G15810 [Arabidopsis thalian	0.382	0.346	0.496	5.6e-39

TAIR|locus:2198918 AT1G80620 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 101/254 (39%), Positives = 131/254 (51%)

Query:   124 QELYKRNTVNETLASKP-SGKPSFEAIRESLRQMRAXXXXXXXXXXXXXXXXXXXPLSLK 182
             Q+L+K+N ++++  ++   G P    I+ +LRQMR                      +L 
Sbjct:   112 QDLFKQNVLSKSGGTRRIEGVP-LTNIKANLRQMRPQQATTESKWA-----------NLS 159

Query:   183 NFTNTLRMKPADDNAHRVIGGSQE-LPALVFGXXXXXXXXAVELERMKTDFVKMYSFEEL 241
                N ++    D+    VIGG+ E LP  V G         V  E MK++F+K Y   EL
Sbjct:   160 GIQNIMKTNINDNIRSNVIGGAAEGLPHSVVGKELEEED--VTEEEMKSEFIKSYDPIEL 217

Query:   242 GDKLKKLRPEGL--EGGFSXXXXXXXXXXXXXXXXXX--SNSKIGAGTISALRSSLARIQ 297
             G+KL+  RPEG   EG FS                      S +    ++ LRS   +  
Sbjct:   218 GEKLRLYRPEGKKEEGWFSLQELNQRLVKLRAMEEEQFQKTSIVHPSFVNNLRSEFHKFT 277

Query:   298 IEKEEKAR-VQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREE 356
               K +K+   Q  NI     GTP+Y+L PPK+ LVE YFHPDNMSSAEKMKIELAKVREE
Sbjct:   278 --KAQKSDPFQNTNIWGVLSGTPKYMLEPPKDQLVETYFHPDNMSSAEKMKIELAKVREE 335

Query:   357 FKMSESDCGSARVQ 370
             FKMSESDCGSARVQ
Sbjct:   336 FKMSESDCGSARVQ 349

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=ISS

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2036229 AT1G15810 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 5.6e-39, Sum P(3) = 5.6e-39
 Identities = 74/149 (49%), Positives = 91/149 (61%)

Query:   224 ELERMKTDFVKMYSFEELGDKLKKLRPEG--LEGGFSXXXXXXXXXXXXXXXXXXSNSKI 281
             E E   T+F+  Y+ EELG+KL+ LRPEG   EG FS                  +  + 
Sbjct:   208 ETEEAMTEFLMFYNEEELGEKLRTLRPEGEKKEGWFSLEELNQRLVKLRQVEEKEAQYR- 266

Query:   282 GAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMS 341
                  + LR+ ++  + E  E +  Q + I+   GG PEY L PPKE LV+ YFHPDNMS
Sbjct:   267 -TKNFAQLRNVISSFKNENSEASSQQNVAIMGHLGGIPEYKLLPPKEDLVDTYFHPDNMS 325

Query:   342 SAEKMKIELAKVREEFKMSESDCGSARVQ 370
             SAEKMKIEL+KVREEFKMSESDCGSARVQ
Sbjct:   326 SAEKMKIELSKVREEFKMSESDCGSARVQ 354

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_III1496 hypothetical protein (470 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG2815	256	consensus Mitochondrial/choloroplast ribosomal pro	99.9
TIGR00952	86	S15_bact ribosomal protein S15, bacterial/organell	97.43
PTZ00119	302	40S ribosomal protein S15; Provisional	97.37
PRK05626	89	rpsO 30S ribosomal protein S15; Reviewed	97.28
cd00353	80	Ribosomal_S15p_S13e Ribosomal protein S15 (prokary	97.14
PF00312	83	Ribosomal_S15: Ribosomal protein S15; InterPro: IP	96.3
COG0184	89	RpsO Ribosomal protein S15P/S13E [Translation, rib	94.38
CHL00027	90	rps15 ribosomal protein S15	94.29
KOG1161	310	consensus Protein involved in vacuolar polyphospha	83.44

>KOG2815 consensus Mitochondrial/choloroplast ribosomal protein S15 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.1e-24  Score=205.87  Aligned_cols=167  Identities=29%  Similarity=0.271  Sum_probs=141.8

Q ss_pred             CCcccchhhhhhhHHHHHhhhhhhhHHHhhcChhHHHHHhhhcCCCCC--CCcccHHHHHHHHHHHHHhhhcccCcCCCC
Q 017005          206 ELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGL--EGGFSLRELNERLMRLRVMEMNESNSKIGA  283 (379)
Q Consensus       206 ~lP~svFgkEl~~~~~~~~~e~~~~ef~k~Ys~eELGkKL~~LRP~g~--k~WFSL~ELn~RL~KLremE~~e~~s~~~g  283 (379)
                      .||..+++++.....+.+  +++...|++.|..+||+++++.++|.+.  ++|||+.+|+.++.||+.+++.+  .+..-
T Consensus        23 ~lp~~~~~~~~~~~~~~e--~e~~~~~Lk~~~~~~lr~k~r~~~~~~~~~es~ksl~~l~~~~~k~~~~~~~e--l~ke~   98 (256)
T KOG2815|consen   23 LLPKKGGAKEPDNSKGSE--SEKRSLFLKAYRGEELRKKYRDLKPLDKAPESVKSLFQLNPAIEKLDTVEKAE--LSKEV   98 (256)
T ss_pred             hccccccccccccccccc--hHHHHHhcccccHHHHhhhhhhccccccCchhhHHHHHhhhhhHHHHHHHHHH--HHHHH
Confidence            688888888887777766  6789999999999999999999999998  99999999999999999998754  33333


Q ss_pred             cChHHHHHHHHHHHHHHHhhh---hhhhhhhhhhcCCCCCcccCCChhHHHhhhcCCCCCCHHHHHHHHHHHHHHH-hcc
Q 017005          284 GTISALRSSLARIQIEKEEKA---RVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREE-FKM  359 (379)
Q Consensus       284 ~~~~~LR~sl~~lk~~~~~k~---s~Q~~~~l~~lggtP~ym~~PPk~~Lve~Yfhpd~mss~Ek~K~el~kVR~e-Fkm  359 (379)
                      ..+..+.++++---++.-.-.   +.|..++++.++|++.|++.+|+.|++.||||++|||+.|+||+.|..||.| |++
T Consensus        99 ~~~~~~~~~~e~k~~k~t~a~~~d~~~~~~~~~e~~~~~r~~l~~~kr~~~lril~~~n~ss~e~~k~~lk~~~~e~~~~  178 (256)
T KOG2815|consen   99 KNHKQDNNSLEEKFAKKTAAIRRDTFELEAIIIELSGKIRIKLLIDKREKILRILRRRNLSSFEKIKIKLKLVRKEPFQR  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHhcchhhhhchhhHhhcccHHHHHHHHhhhhccccHHHHHHHHHHhccCCccc
Confidence            344555555543222221111   7789999999999999999999999999999999999999999999999999 999


Q ss_pred             CcCccCccceeeeeeec
Q 017005          360 SESDCGSARVQSKGFFI  376 (379)
Q Consensus       360 se~DcGsarVQia~l~~  376 (379)
                      .|.||||++||+|..|+
T Consensus       179 ~e~dtgs~~vQ~~~~t~  195 (256)
T KOG2815|consen  179 FESDTGSAEVQAAFPTV  195 (256)
T ss_pred             ccccccchhHhHHhHHH
Confidence            99999999999999884

>TIGR00952 S15_bact ribosomal protein S15, bacterial/organelle

Probab=97.43  E-value=3e-05  Score=63.89  Aligned_cols=30  Identities=30%  Similarity=0.339  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhccCcCccCccceeeeeeec
Q 017005          347 KIELAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       347 K~el~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      +.+-+++-++|+.++.||||+.||||.||.
T Consensus         2 ~~~k~~li~~~~~~~~DtGS~eVQiA~LT~   31 (86)
T TIGR00952         2 KERKQEIIKEFQLHEKDTGSPEVQIALLTE   31 (86)
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence            456788999999999999999999999883

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13.

>PTZ00119 40S ribosomal protein S15; Provisional

Probab=97.37  E-value=8.3e-05  Score=72.95  Aligned_cols=54  Identities=19%  Similarity=0.060  Sum_probs=49.2

Q ss_pred             cCCChhHHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCccceeeeeeec
Q 017005          323 LHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       323 ~~PPk~~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      ..-...+.|.+.++=+|=|..|++|..-+++.++|++++.|.||+.||||.||.
T Consensus        83 ~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTe  136 (302)
T PTZ00119         83 DIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTE  136 (302)
T ss_pred             chhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            344566789999999999999999999999999999999999999999999983

>PRK05626 rpsO 30S ribosomal protein S15; Reviewed

Probab=97.28  E-value=6e-05  Score=62.49  Aligned_cols=30  Identities=30%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhccCcCccCccceeeeeeec
Q 017005          347 KIELAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       347 K~el~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      +.+-+.+.++|+.++.||||+.||||.||.
T Consensus         5 ~~~k~~li~~f~~~~~DTGS~eVQiA~LT~   34 (89)
T PRK05626          5 KEKKAEIIKEYGRHEGDTGSPEVQVALLTE   34 (89)
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence            445678999999999999999999999873

>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

Probab=97.14  E-value=8.9e-05  Score=59.58  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=24.4

Q ss_pred             HHHHHHHhccCcCccCccceeeeeee
Q 017005          350 LAKVREEFKMSESDCGSARVQSKGFF  375 (379)
Q Consensus       350 l~kVR~eFkmse~DcGsarVQia~l~  375 (379)
                      .++|.++|++++.||||+.||||.||
T Consensus         2 ~~~i~~~~~~~~~DtGs~evQia~LT   27 (80)
T cd00353           2 KQEILKEFGLAEGDTGSPEVQLALLT   27 (80)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHH
Confidence            47899999999999999999999987

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.

>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.30  E-value=0.00083  Score=54.27  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=23.9

Q ss_pred             HHHHHHhccCcCccCccceeeeeeec
Q 017005          351 AKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       351 ~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      +++.++|..+++||||+.||||.||.
T Consensus         4 ~~~i~~~~~~~~dtgs~evqia~LT~   29 (83)
T PF00312_consen    4 QKSIKKFQRHPNDTGSPEVQIAILTE   29 (83)
T ss_dssp             HHHHHHHSSSTTSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence            67889999999999999999999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....

>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

Probab=94.38  E-value=0.01  Score=49.62  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=23.4

Q ss_pred             HHHHHHhccCcCccCccceeeeeee
Q 017005          351 AKVREEFKMSESDCGSARVQSKGFF  375 (379)
Q Consensus       351 ~kVR~eFkmse~DcGsarVQia~l~  375 (379)
                      +++|+||..++.|-||..||||-||
T Consensus         9 ~~l~~eyg~~~~dtgs~evq~a~Lt   33 (89)
T COG0184           9 QELRDEYGIPEVDTGSGEVQLALLT   33 (89)
T ss_pred             HHHHHHhCCCCCCCCCcHHHHHHHH
Confidence            5789999999999999999999887

>CHL00027 rps15 ribosomal protein S15

Probab=94.29  E-value=0.007  Score=50.79  Aligned_cols=17  Identities=29%  Similarity=0.278  Sum_probs=15.7

Q ss_pred             CcCccCccceeeeeeec
Q 017005          360 SESDCGSARVQSKGFFI  376 (379)
Q Consensus       360 se~DcGsarVQia~l~~  376 (379)
                      +|.||||++||||.||-
T Consensus        15 ~~~DTGS~evQiA~LT~   31 (90)
T CHL00027         15 KEENRGSVEFQVFSFTN   31 (90)
T ss_pred             CCCCCCChHHHHHHHHH
Confidence            79999999999999873

>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]

Probab=83.44  E-value=5.4  Score=40.25  Aligned_cols=115  Identities=24%  Similarity=0.251  Sum_probs=67.1

Q ss_pred             hhhhhhhHHHHHhhhhhhhHHH-hhcChhHHHHHhhhcCCCCCCCcccH-------------------------HHHHHH
Q 017005          212 FGKEKKEEEKAVELERMKTDFV-KMYSFEELGDKLKKLRPEGLEGGFSL-------------------------RELNER  265 (379)
Q Consensus       212 FgkEl~~~~~~~~~e~~~~ef~-k~Ys~eELGkKL~~LRP~g~k~WFSL-------------------------~ELn~R  265 (379)
                      |||.|.++.=.+        .. +.-+|++|-|+|+.+-+..+.+|.-.                         +||.+|
T Consensus         3 FGk~L~~~~l~e--------w~~~yinYk~LKK~lK~~~~~~~~~~~~~~~e~dFv~~Ld~ELEKv~~F~lek~~el~~R   74 (310)
T KOG1161|consen    3 FGKYLKEELLPE--------WKDKYINYKELKKLLKQYSIQTADSSPDSRDESDFVRLLDAELEKVNGFQLEKESELIIR   74 (310)
T ss_pred             hhHHHHHhhhhh--------HhhhhcCHHHHHHHHHHhccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899998443222        22 23489999999999966666555522                         356666


Q ss_pred             HHHHHHhhhcccCcCCCCcChHHHHHHHHHHHHHHHhhhhhhhhhhhhhcC--C-----------CCCcccCCChhHHHh
Q 017005          266 LMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFG--G-----------TPEYLLHPPKEHLVE  332 (379)
Q Consensus       266 L~KLremE~~e~~s~~~g~~~~~LR~sl~~lk~~~~~k~s~Q~~~~l~~lg--g-----------tP~ym~~PPk~~Lve  332 (379)
                      |..|++-=.......+.--.+..||..|..+..+      +..|.-+..|+  |           || |.+.||-...|.
T Consensus        75 l~~L~e~~~~~~~~~~~~~~~~~lr~~l~~~~~e------m~~L~~fs~LN~tGf~KILKK~DKrtg-~~l~~~f~~~l~  147 (310)
T KOG1161|consen   75 LKELEEKIDALSLEPPSAEEMKELREELVDFHGE------MVLLENFSRLNYTGFAKILKKHDKRTG-YRLRPYFQVRLL  147 (310)
T ss_pred             HHHHHHHhhccccCCcchhHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHhcccc-cccccHHHHHHH
Confidence            6666653221122233333588999999988755      23344333333  2           77 888888655443


Q ss_pred             h--hcCCCCCC
Q 017005          333 K--YFHPDNMS  341 (379)
Q Consensus       333 ~--Yfhpd~ms  341 (379)
                      -  ||+-|.++
T Consensus       148 ~~Pf~~~e~~~  158 (310)
T KOG1161|consen  148 HQPFFTTEQLF  158 (310)
T ss_pred             hCCCchhhhHH
Confidence            2  33444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 45/337 (13%), Positives = 103/337 (30%), Gaps = 106/337 (31%)

Query: 8   PKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSSSS 67
           P+    TNP  + + + S  D     +N+ + + +   + +++SL    P          
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---------- 368

Query: 68  SSRGPPSKVASLEEIRR---NLAEFRQRSTVPPPI------ESNSTESQSQSQTQSQSQS 118
                        E R+    L+ F   + +P  +      +   ++             
Sbjct: 369 ------------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM----------- 405

Query: 119 QHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDP 178
             +   +L+K      +L  K                            +          
Sbjct: 406 --VVVNKLHKY-----SLVEK------------------------QPKEST--------- 425

Query: 179 LSLKNFTNTLRMKPADDNA-HRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYS 237
           +S+ +    L++K  ++ A HR I     +P            K  + + +   ++  Y 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIP------------KTFDSDDLIPPYLDQYF 473

Query: 238 FEELGDKLKKLRPEGLEGGFSLRELNERLM--RLRVMEMNESNSKIGAGTISALRSSLAR 295
           +  +G  LK +        F +  L+ R +  ++R      + S     T+  L+    +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYK 531

Query: 296 IQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVE 332
             I   +    + +N +  F       L   +E+L+ 
Sbjct: 532 PYICDNDPKYERLVNAILDF-------LPKIEENLIC 561

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
3r8n_O	88	30S ribosomal protein S15; protein biosynthesis, R	97.28
1a32_A	88	Ribosomal protein S15; multiwavelength anomalous d	97.22
4a5u_B	88	30S ribosomal protein S15; transferase-RNA binding	97.19
2vqe_O	89	30S ribosomal protein S15; tRNA-binding, rRNA-bind	97.17
3ulw_A	93	30S ribosomal protein S15; structural genomics, ID	97.06
3bbn_O	90	Ribosomal protein S15; small ribosomal subunit, sp	94.85
3twe_A	27	Alpha4H; unknown function; HET: PGE; 1.36A {Synthe	84.78

>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H

Probab=97.22  E-value=5e-05  Score=61.75  Aligned_cols=27  Identities=33%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             HHHHHHHhccCcCccCccceeeeeeec
Q 017005          350 LAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       350 l~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      -+++-++|+.+|.||||++||||.||.
T Consensus         7 K~~ii~~~~~~~~DTGS~EvQIA~LT~   33 (88)
T 1a32_A            7 KREIIEQFKVHENDTGSPEVQIAILTE   33 (88)
T ss_dssp             HHHHHHHTCCSCCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence            467789999999999999999999984

>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...

Probab=97.19  E-value=5.8e-05  Score=61.45  Aligned_cols=28  Identities=32%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             HHHHHHHHhccCcCccCccceeeeeeec
Q 017005          349 ELAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       349 el~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      +-++|-++|+.+|.||||++||||.||.
T Consensus         6 ~K~~ii~~~~~~~~DTGS~EvQiA~LT~   33 (88)
T 4a5u_B            6 ATAKIVSEFGRDANDTGSTEVQVALLTA   33 (88)
T ss_dssp             HHHHHHHHHSSSTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence            3456789999999999999999999884

>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...

Probab=97.17  E-value=5.6e-05  Score=61.60  Aligned_cols=27  Identities=33%  Similarity=0.324  Sum_probs=24.3

Q ss_pred             HHHHHHHhccCcCccCccceeeeeeec
Q 017005          350 LAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       350 l~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      -+++-++|+.+|.||||++||||.||.
T Consensus         8 K~~ii~~~~~~~~DTGS~EvQIA~LT~   34 (89)
T 2vqe_O            8 KQKVIQEFARFPGDTGSTEVQVALLTL   34 (89)
T ss_dssp             HHHHHHTTCSSTTCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence            457789999999999999999999984

>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=94.85  E-value=0.0031  Score=51.63  Aligned_cols=19  Identities=26%  Similarity=0.193  Sum_probs=16.8

Q ss_pred             ccCcCccCccceeeeeeec
Q 017005          358 KMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       358 kmse~DcGsarVQia~l~~  376 (379)
                      +.+|.||||++||||.||.
T Consensus        13 ~r~~~DTGS~EVQIA~LT~   31 (90)
T 3bbn_O           13 EKKEENKGSVEFQVFCFTN   31 (90)
T ss_dssp             SCCSSSSCSTTHHHHHHHH
T ss_pred             ccCCCCCCChhHHHHHHHH
Confidence            4589999999999999883

>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*

Probab=84.78  E-value=0.53  Score=31.03  Aligned_cols=14  Identities=50%  Similarity=0.769  Sum_probs=12.3

Q ss_pred             cHHHHHHHHHHHHH
Q 017005          258 SLRELNERLMRLRV  271 (379)
Q Consensus       258 SL~ELn~RL~KLre  271 (379)
                      -|++||+||+|||.
T Consensus         9 eledlqerlrklrk   22 (27)
T 3twe_A            9 ELEDLQERLRKLRK   22 (27)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            37899999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1vs5o1	88	Ribosomal protein S15 {Escherichia coli [TaxId: 56	97.55
d1kuqa_	84	Ribosomal protein S15 {Thermus thermophilus [TaxId	97.43
d1a32a_	85	Ribosomal protein S15 {Bacillus stearothermophilus	97.41

>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=5.8e-06  Score=65.26  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             HHHHHHHhccCcCccCccceeeeeeec
Q 017005          350 LAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       350 l~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      -++|..+|+.|++||||+.||||.||.
T Consensus         7 k~~ii~~~~~~~~DtGS~evQiA~lT~   33 (88)
T d1vs5o1           7 TAKIVSEFGRDANDTGSTEVQVALLTA   33 (88)
T ss_dssp             HHHHHHHHCSSSSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCChHHHHHHHHH
Confidence            356789999999999999999999973

>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=7.3e-06  Score=64.06  Aligned_cols=30  Identities=37%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhccCcCccCccceeeeeeec
Q 017005          347 KIELAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       347 K~el~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      |.+-+++.++|+.|+.|+||+.||||.||.
T Consensus         2 k~~K~~ii~~~~~~~~DtGS~evQiA~lT~   31 (84)
T d1kuqa_           2 KEEKQKVIQEFARFPGDTGSTEVQVALLTL   31 (84)
T ss_dssp             TTHHHHHHHHHCSSTTCCSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence            556788999999999999999999999974

>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.41  E-value=1.1e-05  Score=63.12  Aligned_cols=29  Identities=31%  Similarity=0.329  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhccCcCccCccceeeeeeec
Q 017005          348 IELAKVREEFKMSESDCGSARVQSKGFFI  376 (379)
Q Consensus       348 ~el~kVR~eFkmse~DcGsarVQia~l~~  376 (379)
                      .+-+.+.++|+.||.||||+.||||.||.
T Consensus         4 ~~K~~~i~~~~~~~~DtGS~evQiA~lT~   32 (85)
T d1a32a_           4 ERKREIIEQFKVHENDTGSPEVQIAILTE   32 (85)
T ss_dssp             HHHHHHHHHTCCSCCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHhhHH
Confidence            34577889999999999999999999984