Citrus Sinensis ID: 017011

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MGVEDLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF
cccccccccccEEEEcccccEEEcccccccccEEcccccccccccccccccccccccccHHHHHccccEEEcccccccccccHHHHHHHHHHHHccccccccccccEEcccccccccHHHHHHHHHHHccccccEEEEEEHHHHHHHccccccEEEEEcccccEEEccccccccccccEEEEEcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccEEcccHHHHHHHcccccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEcccccccccHHHHHHHHHHHcccccccEEEEcccccccccEEHHHHHcccccccccccccccccccccccEEcccc
cccccccccccEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccEEcHHHHHcHHHEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHccEEEEcHHHccccHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
MGVEDLYEFRSivcdsgsgsvktgfagddapcvvfpsligqprnknsmigigqkdmyfgdeaqakrgvlrlshpvnrgmvrDWDAMERLWEHIFDKELRVTieehpvlltepplnpkinrEKMVEIMFEGFEIPATYVAIQAVLSLYASgrttgivmdsgegvthvvpiyegyalpHAIQRLELAGKDLTDYLTtnltkdgyifTTSAEREIVRDIKERLSYVAMDFQKELAMSkessqldkqyelpdgqvitigaaqfkgpevlfdpsrmgletegAHEILVRAIMRSDMDVRREMYGNVVlsggtslipglpDRLAKELCnlaspgvgvrvvappqrlhsVWIGGSILASLSTFQQMWITKedymesgpsvvhmkcf
MGVEDLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFpsligqprnkNSMIGIGQKDMYFGDEAQAKrgvlrlshpvnrgmvRDWDAMERLWEHIFDKELRVTIeehpvlltepplnpkinREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTnltkdgyifttsaEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF
MGVEDLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF
*****LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQ*****************LPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDY*************
*****LY*FRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNS***IGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQ***************YELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF
MGVEDLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF
*******EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF
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MGVEDLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query379 2.2.26 [Sep-21-2011]
O65315377 Actin OS=Coleochaete scut N/A no 0.981 0.986 0.655 1e-153
P30167377 Actin-58 OS=Solanum tuber N/A no 0.981 0.986 0.655 1e-151
O65316377 Actin OS=Mesostigma virid N/A no 0.981 0.986 0.653 1e-151
Q10DV7377 Actin-1 OS=Oryza sativa s yes no 0.989 0.994 0.648 1e-150
A2XLF2377 Actin-1 OS=Oryza sativa s N/A no 0.989 0.994 0.648 1e-150
P53492377 Actin-7 OS=Arabidopsis th yes no 0.981 0.986 0.650 1e-150
P30171377 Actin-97 OS=Solanum tuber N/A no 0.981 0.986 0.653 1e-150
P30173377 Actin-101 OS=Solanum tube N/A no 0.989 0.994 0.650 1e-150
O81221377 Actin OS=Gossypium hirsut N/A no 0.981 0.986 0.650 1e-150
P02578375 Actin-1 OS=Acanthamoeba c N/A no 0.981 0.992 0.655 1e-150
>sp|O65315|ACT_COLSC Actin OS=Coleochaete scutata PE=2 SV=1 Back     alignment and function desciption
 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 244/372 (65%), Positives = 309/372 (83%)

Query: 8   EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRG 67
           E  ++VCD+GSG VK GFAGDDAP  VFPS++G+PR++  M+G+GQKD Y GDEAQ+KRG
Sbjct: 6   EVSALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRG 65

Query: 68  VLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIM 127
           +L L +P+  G+V +WD ME++W H F  ELRV  EEHPVLLTE PLNPK NREKM +IM
Sbjct: 66  ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 125

Query: 128 FEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187
           FE F +PA YVAIQAVLSLYASGRTTGIV+DSG+GVTH VPIYEGYALPHAI RL+LAG+
Sbjct: 126 FETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 185

Query: 188 DLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP 247
           DLTDY+   LT+ GY FTT+AEREIVRDIKE+L+YVA+DF++E+  ++ SS L+K YELP
Sbjct: 186 DLTDYMMKILTERGYAFTTTAEREIVRDIKEKLAYVALDFEQEMQTAQNSSSLEKSYELP 245

Query: 248 DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGT 307
           DGQVITIG+ +F+ PEVLF+P+ +G+E+ G HE    +IM+ D+D+R+++YGN+VLSGGT
Sbjct: 246 DGQVITIGSERFRCPEVLFNPALIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGT 305

Query: 308 SLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYM 367
           ++ PG+ DR++KE+  LA   + ++VVAPP+R +SVWIGGSILASLSTFQQMWI K +Y 
Sbjct: 306 TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYD 365

Query: 368 ESGPSVVHMKCF 379
           ESGPS+VH KCF
Sbjct: 366 ESGPSIVHRKCF 377
Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
Coleochaete scutata (taxid: 3125)
>sp|P30167|ACT3_SOLTU Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1 Back     alignment and function description
>sp|O65316|ACT_MESVI Actin OS=Mesostigma viride PE=3 SV=1 Back     alignment and function description
>sp|Q10DV7|ACT1_ORYSJ Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1 Back     alignment and function description
>sp|A2XLF2|ACT1_ORYSI Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1 Back     alignment and function description
>sp|P53492|ACT7_ARATH Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1 Back     alignment and function description
>sp|P30171|ACT11_SOLTU Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1 Back     alignment and function description
>sp|P30173|ACT13_SOLTU Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1 Back     alignment and function description
>sp|O81221|ACT_GOSHI Actin OS=Gossypium hirsutum PE=3 SV=1 Back     alignment and function description
>sp|P02578|ACT1_ACACA Actin-1 OS=Acanthamoeba castellanii PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
225444673376 PREDICTED: actin isoform 1 [Vitis vinife 0.989 0.997 0.784 1e-178
224069172376 actin 8 [Populus trichocarpa] gi|2228334 0.989 0.997 0.76 1e-173
255550395376 actin, putative [Ricinus communis] gi|22 0.989 0.997 0.744 1e-171
5902733377 RecName: Full=Actin gi|3127133|gb|AAC160 0.981 0.986 0.655 1e-151
322422113377 actin 1 [Celosia argentea] gi|356968426| 0.989 0.994 0.658 1e-151
301131212377 actin [Cicer arietinum] 0.989 0.994 0.653 1e-150
168061420377 predicted protein [Physcomitrella patens 0.981 0.986 0.658 1e-150
357464527382 Actin [Medicago truncatula] gi|355491593 0.989 0.981 0.650 1e-150
259648119377 actin [Larix gmelinii] gi|334849794|dbj| 0.989 0.994 0.653 1e-149
319998245377 actin [Ananas comosus] 0.989 0.994 0.653 1e-149
>gi|225444673|ref|XP_002277323.1| PREDICTED: actin isoform 1 [Vitis vinifera] gi|297738537|emb|CBI27782.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 294/375 (78%), Positives = 344/375 (91%)

Query: 5   DLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQA 64
           D  E +++VCD+GSG VK GFAGDDAPCVVFPS+IG PRNK++MIGIGQK+MY GDEAQA
Sbjct: 2   DFDEKQAVVCDNGSGLVKAGFAGDDAPCVVFPSVIGWPRNKHAMIGIGQKEMYLGDEAQA 61

Query: 65  KRGVLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMV 124
           +RGVLRLS+P+N GMVRDW+AMERLW+H F+KELRV+IEE PVLLTEPPLNPK N+EKMV
Sbjct: 62  RRGVLRLSYPINHGMVRDWEAMERLWQHTFEKELRVSIEERPVLLTEPPLNPKFNKEKMV 121

Query: 125 EIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLEL 184
           EIMFE FEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRL+L
Sbjct: 122 EIMFEAFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLDL 181

Query: 185 AGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQY 244
           AG+DLTDYLT  LT++GY+FTTSA+REIV+DIKE+ +YVAMDF+KELA S+ES +LDKQY
Sbjct: 182 AGRDLTDYLTKILTEEGYVFTTSADREIVKDIKEQTTYVAMDFEKELATSRESLELDKQY 241

Query: 245 ELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLS 304
           ELPDGQVITIG  +FK PE+LFDPS++G+E+ G H+I++++I R DMD+RR+MYGNVVLS
Sbjct: 242 ELPDGQVITIGTGRFKCPEILFDPSKVGIESCGVHDIVLKSIRRCDMDIRRDMYGNVVLS 301

Query: 305 GGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKE 364
           GGT+++PGL DRLAKEL +LA PGV VRVVAPP+R +SVWIGGSILASLSTF+QMWI KE
Sbjct: 302 GGTTMVPGLADRLAKELSSLAPPGVRVRVVAPPERKYSVWIGGSILASLSTFEQMWIKKE 361

Query: 365 DYMESGPSVVHMKCF 379
           +YMESG S+VHMKCF
Sbjct: 362 EYMESGSSIVHMKCF 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069172|ref|XP_002326292.1| actin 8 [Populus trichocarpa] gi|222833485|gb|EEE71962.1| actin 8 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550395|ref|XP_002516248.1| actin, putative [Ricinus communis] gi|223544734|gb|EEF46250.1| actin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|5902733|sp|O65315.1|ACT_COLSC RecName: Full=Actin gi|3127133|gb|AAC16054.1| actin [Coleochaete scutata] Back     alignment and taxonomy information
>gi|322422113|gb|ADX01226.1| actin 1 [Celosia argentea] gi|356968426|gb|AET43294.1| actin [Beta vulgaris] Back     alignment and taxonomy information
>gi|301131212|gb|ADK62563.1| actin [Cicer arietinum] Back     alignment and taxonomy information
>gi|168061420|ref|XP_001782687.1| predicted protein [Physcomitrella patens subsp. patens] gi|37038130|gb|AAQ88109.1| actin 1 [Physcomitrella patens] gi|162665847|gb|EDQ52518.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|357464527|ref|XP_003602545.1| Actin [Medicago truncatula] gi|355491593|gb|AES72796.1| Actin [Medicago truncatula] Back     alignment and taxonomy information
>gi|259648119|dbj|BAI40367.1| actin [Larix gmelinii] gi|334849794|dbj|BAK38534.1| actin [Larix gmelinii] Back     alignment and taxonomy information
>gi|319998245|gb|ADV91594.1| actin [Ananas comosus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
TAIR|locus:2178128377 ACT7 "actin 7" [Arabidopsis th 0.981 0.986 0.650 3.2e-136
TAIR|locus:2099302377 ACT11 "AT3G12110" [Arabidopsis 0.981 0.986 0.645 1.8e-135
TAIR|locus:2148298377 ACT4 "actin 4" [Arabidopsis th 0.981 0.986 0.650 2.9e-135
DICTYBASE|DDB_G0275023376 act22 "actin" [Dictyostelium d 0.981 0.989 0.653 6e-135
TAIR|locus:2075160377 ACT12 "AT3G46520" [Arabidopsis 0.981 0.986 0.647 6e-135
TAIR|locus:2040656377 ACT1 "AT2G37620" [Arabidopsis 0.981 0.986 0.642 9.8e-135
TAIR|locus:2084410377 ACT3 "AT3G53750" [Arabidopsis 0.981 0.986 0.642 9.8e-135
DICTYBASE|DDB_G0289811376 act10 "actin" [Dictyostelium d 0.981 0.989 0.650 2e-134
DICTYBASE|DDB_G0289663376 act5 "actin" [Dictyostelium di 0.981 0.989 0.650 2e-134
DICTYBASE|DDB_G0289553376 act1 "actin" [Dictyostelium di 0.981 0.989 0.650 2e-134
TAIR|locus:2178128 ACT7 "actin 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 242/372 (65%), Positives = 307/372 (82%)

Query:     8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRG 67
             + + +VCD+G+G VK GFAGDDAP  VFPS++G+PR+   M+G+GQKD Y GDEAQ+KRG
Sbjct:     6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 65

Query:    68 VLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIM 127
             +L L +P+  G+V +WD ME++W H F  ELRV  EEHPVLLTE PLNPK NREKM +IM
Sbjct:    66 ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 125

Query:   128 FEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187
             FE F +PA YVAIQAVLSLYASGRTTGIV+DSG+GV+H VPIYEGYALPHAI RL+LAG+
Sbjct:   126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185

Query:   188 DLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP 247
             DLTD L   LT+ GY+FTT+AEREIVRDIKE+L+YVA+D+++EL  +K SS ++K YELP
Sbjct:   186 DLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELP 245

Query:   248 DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGT 307
             DGQVITIGA +F+ PEVLF PS +G+E  G HE    +IM+ D+D+R+++YGN+VLSGG+
Sbjct:   246 DGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGS 305

Query:   308 SLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYM 367
             ++ PG+ DR++KE+  LA   + ++VVAPP+R +SVWIGGSILASLSTFQQMWI+K +Y 
Sbjct:   306 TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYD 365

Query:   368 ESGPSVVHMKCF 379
             ESGPS+VH KCF
Sbjct:   366 ESGPSIVHRKCF 377
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007010 "cytoskeleton organization" evidence=RCA;TAS
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0009845 "seed germination" evidence=IMP
GO:0048364 "root development" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0010053 "root epidermal cell differentiation" evidence=IMP
GO:0048767 "root hair elongation" evidence=RCA;IMP
GO:0051301 "cell division" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005856 "cytoskeleton" evidence=ISS
GO:0009416 "response to light stimulus" evidence=IEP
GO:0009611 "response to wounding" evidence=IEP
TAIR|locus:2099302 ACT11 "AT3G12110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148298 ACT4 "actin 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275023 act22 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2075160 ACT12 "AT3G46520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040656 ACT1 "AT2G37620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084410 ACT3 "AT3G53750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289811 act10 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289663 act5 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289553 act1 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O16808ACT_MAYDENo assigned EC number0.64240.98150.9893N/Ano
O17320ACT_CRAGINo assigned EC number0.64110.99201.0N/Ano
Q25472ACT2_MOLOCNo assigned EC number0.64510.98150.9841N/Ano
P0CJ47ACT3_ARATHNo assigned EC number0.64240.98150.9867yesno
P0CJ46ACT1_ARATHNo assigned EC number0.64240.98150.9867yesno
A3C6D7ACT2_ORYSJNo assigned EC number0.640.98940.9946yesno
Q8JJB8ACTG_TRISCNo assigned EC number0.65050.98150.992N/Ano
Q6P8G3ACT3_XENTRNo assigned EC number0.64510.98150.9867yesno
P53497ACT12_ARATHNo assigned EC number0.64780.98150.9867yesno
A2BDB0ACTG_XENLANo assigned EC number0.65050.98150.992N/Ano
P30167ACT3_SOLTUNo assigned EC number0.65590.98150.9867N/Ano
O81221ACT_GOSHINo assigned EC number0.65050.98150.9867N/Ano
Q10DV7ACT1_ORYSJNo assigned EC number0.6480.98940.9946yesno
P20399ACT2_XENTRNo assigned EC number0.64510.98150.9867yesno
Q05214ACT1_TOBACNo assigned EC number0.64780.98150.9867N/Ano
P02578ACT1_ACACANo assigned EC number0.65590.98150.992N/Ano
Q553U6ACT22_DICDINo assigned EC number0.65320.98150.9893yesno
P04752ACT3_XENLANo assigned EC number0.64780.98150.9867N/Ano
P02576ACTA_PHYPONo assigned EC number0.65320.98150.9893N/Ano
P04751ACTC_XENLANo assigned EC number0.64510.98150.9867N/Ano
P63258ACTG_BOVINNo assigned EC number0.65050.98150.992yesno
P63259ACTG_RATNo assigned EC number0.65050.98150.992yesno
P17126ACT_HYDVUNo assigned EC number0.64780.98150.9893N/Ano
P83751ACTB_CTEIDNo assigned EC number0.64780.98150.992N/Ano
P83750ACTB_CYPCANo assigned EC number0.64780.98150.992N/Ano
P10995ACT2_XENLANo assigned EC number0.64510.98150.9867N/Ano
Q5ZMQ2ACTG_CHICKNo assigned EC number0.65050.98150.992yesno
Q5JAK2ACTG_RANLENo assigned EC number0.65050.98150.992N/Ano
A2XLF2ACT1_ORYSINo assigned EC number0.6480.98940.9946N/Ano
P20904ACT_VOLCANo assigned EC number0.65050.98150.9867N/Ano
P63257ACTG_TRIVUNo assigned EC number0.65050.98150.992N/Ano
P53498ACT_CHLRENo assigned EC number0.65050.98150.9867N/Ano
P07830ACT1_DICDINo assigned EC number0.65050.98150.9893yesno
P53496ACT11_ARATHNo assigned EC number0.64510.98150.9867yesno
P30171ACT11_SOLTUNo assigned EC number0.65320.98150.9867N/Ano
P30173ACT13_SOLTUNo assigned EC number0.65060.98940.9946N/Ano
P53492ACT7_ARATHNo assigned EC number0.65050.98150.9867yesno
P53505ACT5_XENLANo assigned EC number0.65050.98150.9893N/Ano
Q54GX7ACT10_DICDINo assigned EC number0.65050.98150.9893yesno
Q10AZ4ACT3_ORYSJNo assigned EC number0.65050.98150.9867yesno
A2XNS1ACT3_ORYSINo assigned EC number0.65050.98150.9867N/Ano
P53478ACT5_CHICKNo assigned EC number0.64780.98150.9893yesno
O65316ACT_MESVINo assigned EC number0.65320.98150.9867N/Ano
O65315ACT_COLSCNo assigned EC number0.65590.98150.9867N/Ano
P63261ACTG_HUMANNo assigned EC number0.65050.98150.992yesno
P63260ACTG_MOUSENo assigned EC number0.65050.98150.992yesno
P0C539ACT2_ORYSINo assigned EC number0.640.98940.9946N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016409001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence;; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells (By similarity) (376 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 0.0
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 0.0
smart00268373 smart00268, ACTIN, Actin 0.0
pfam00022367 pfam00022, Actin, Actin 0.0
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-149
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-135
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 1e-123
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 7e-93
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 1e-17
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information 
 Score =  534 bits (1376), Expect = 0.0
 Identities = 242/372 (65%), Positives = 302/372 (81%)

Query: 8   EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRG 67
           + +++V D+GSG  K GFAGDDAP  VFPS++G+PR+   M+G+GQKD Y GDEAQ+KRG
Sbjct: 5   DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 64

Query: 68  VLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIM 127
           +L L +P+  G+V +WD ME++W H F  ELRV  EEHPVLLTE PLNPK NREKM +IM
Sbjct: 65  ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124

Query: 128 FEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187
           FE F  PA YVAIQAVLSLYASGRTTGIVMDSG+GV+H VPIYEGYALPHAI RL+LAG+
Sbjct: 125 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGR 184

Query: 188 DLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP 247
           DLTDY+   LT+ GY FTT+AEREIVRDIKE+L+YVA+DF+ E+  +  SS L+K YELP
Sbjct: 185 DLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP 244

Query: 248 DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGT 307
           DGQVITIG  +F+ PE LF PS +G+E+ G HE    +IM+ D+D+R+++YGNVVLSGGT
Sbjct: 245 DGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGT 304

Query: 308 SLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYM 367
           ++ PG+ DR+ KEL  LA   + ++++APP+R +SVWIGGSILASLSTFQQMWI+KE+Y 
Sbjct: 305 TMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYD 364

Query: 368 ESGPSVVHMKCF 379
           ESGPS+VH KCF
Sbjct: 365 ESGPSIVHRKCF 376

Length = 376
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 379
PTZ00452375 actin; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 100.0
PRK13928336 rod shape-determining protein Mbl; Provisional 99.98
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.95
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.89
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.86
CHL00094 621 dnaK heat shock protein 70 99.82
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.82
PLN03184 673 chloroplast Hsp70; Provisional 99.81
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.81
PRK01433 595 hscA chaperone protein HscA; Provisional 99.81
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.81
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.8
PRK13411 653 molecular chaperone DnaK; Provisional 99.8
PRK05183 616 hscA chaperone protein HscA; Provisional 99.8
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.79
PRK13410 668 molecular chaperone DnaK; Provisional 99.79
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.77
PRK11678450 putative chaperone; Provisional 99.71
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 99.69
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 99.64
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.63
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.61
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 99.58
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 99.51
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 99.35
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 99.32
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 99.28
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 99.24
PRK13917344 plasmid segregation protein ParM; Provisional 99.24
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 99.23
COG4820277 EutJ Ethanolamine utilization protein, possible ch 99.14
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 99.07
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 98.99
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 98.93
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 98.68
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 98.53
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 98.47
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 98.16
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 98.08
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 97.92
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 97.87
PF06277 473 EutA: Ethanolamine utilisation protein EutA; Inter 97.87
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 96.87
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 96.73
PRK13317277 pantothenate kinase; Provisional 96.4
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 96.26
TIGR00555279 panK_eukar pantothenate kinase, eukaryotic/staphyl 96.16
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 95.95
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 95.88
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 95.45
PRK10854 513 exopolyphosphatase; Provisional 95.29
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 95.14
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 95.04
TIGR00744318 ROK_glcA_fam ROK family protein (putative glucokin 94.93
COG1548330 Predicted transcriptional regulator/sugar kinase [ 94.41
PRK09557301 fructokinase; Reviewed 93.86
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 91.84
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 90.89
COG2441374 Predicted butyrate kinase [Energy production and c 89.52
COG4819 473 EutA Ethanolamine utilization protein, possible ch 87.75
PF07318343 DUF1464: Protein of unknown function (DUF1464); In 87.01
PRK13321256 pantothenate kinase; Reviewed 86.74
PRK00976326 hypothetical protein; Provisional 83.11
PRK13324258 pantothenate kinase; Reviewed 81.59
KOG1794336 consensus N-Acetylglucosamine kinase [Carbohydrate 80.75
PF03309206 Pan_kinase: Type III pantothenate kinase; InterPro 80.38
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-83  Score=609.44  Aligned_cols=372  Identities=48%  Similarity=0.888  Sum_probs=347.2

Q ss_pred             CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHHHH
Q 017011            8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAME   87 (379)
Q Consensus         8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~~~   87 (379)
                      ..++||||+||.++|+||+||+.|++++||+++++++.....+...+++++|+++...+..+++++|+++|.+.|||.+|
T Consensus         4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e   83 (375)
T PTZ00452          4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE   83 (375)
T ss_pred             CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence            35689999999999999999999999999999998765322232345688999988777888999999999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEEEE
Q 017011           88 RLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVV  167 (379)
Q Consensus        88 ~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~  167 (379)
                      .+|+|+|.+.|.+++.++|+++++|+++++..|+++++++||.|++|++++.+++++++|++|+++|+|||+|++.|+|+
T Consensus        84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~  163 (375)
T PTZ00452         84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV  163 (375)
T ss_pred             HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc
Q 017011          168 PIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP  247 (379)
Q Consensus       168 pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  247 (379)
                      ||+||+++++++.+.++||.+++++|.++|.++++++.+..+.+.++++|+++||++.|+.++.+...........|++|
T Consensus       164 PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP  243 (375)
T PTZ00452        164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP  243 (375)
T ss_pred             EEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC
Confidence            99999999999999999999999999999998888877666788999999999999999888776544434456789999


Q ss_pred             CCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCC
Q 017011          248 DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASP  327 (379)
Q Consensus       248 ~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~  327 (379)
                      ||+.+.++.+||.+||+||+|+.++.+..+|+++|.++|++||.|.|+.|++||||+||+|++|||.+||++||++++|.
T Consensus       244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~  323 (375)
T PTZ00452        244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS  323 (375)
T ss_pred             CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011          328 GVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF  379 (379)
Q Consensus       328 ~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  379 (379)
                      ..+++|..++++.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus       324 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        324 QLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             CceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            7889999999999999999999999999999999999999999999999998

>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>COG2441 Predicted butyrate kinase [Energy production and conversion] Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK00976 hypothetical protein; Provisional Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 1e-151
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 1e-151
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 1e-150
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 1e-150
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 1e-150
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 1e-150
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 1e-150
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 1e-150
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 1e-150
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 1e-150
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 1e-150
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 1e-150
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 1e-150
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 1e-150
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 1e-149
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 1e-149
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 1e-149
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 1e-149
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 1e-149
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 1e-149
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 1e-148
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 1e-147
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 1e-147
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 1e-147
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 1e-147
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 1e-147
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 1e-147
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 1e-147
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 1e-146
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 1e-146
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 1e-146
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 1e-145
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 1e-145
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 1e-145
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 1e-142
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 1e-142
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 1e-142
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 1e-141
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 1e-140
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 7e-93
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 2e-92
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 2e-56
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 5e-52
3qb0_A 498 Crystal Structure Of Actin-Related Protein Arp4 Fro 2e-19
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 4e-17
4i6m_A477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 4e-15
4i6m_B439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 3e-05
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-04
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  531 bits (1367), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 244/372 (65%), Positives = 302/372 (81%)
Query: 8   EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRG 67
           E +++V D+GSG  K GFAGDDAP  VFPS++G+PR+   M+G+GQKD Y GDEAQ+KRG
Sbjct: 4   EVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 68  VLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIM 127
           +L L +P+  G+V +WD ME++W H F  ELRV  EEHPVLLTE PLNPK NREKM +IM
Sbjct: 64  ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 128 FEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187
           FE F  PA YVAIQAVLSLYASGRTTGIV+DSG+GVTH VPIYEGYALPHAI RL+LAG+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 188 DLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP 247
           DLTDYL   LT+ GY FTT+AEREIVRDIKE+L YVA+DF++E+  +  SS L+K YELP
Sbjct: 184 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYELP 243
Query: 248 DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGT 307
           DGQVITIG  +F+ PE LF PS +G+E+ G HE    +IM+ D+D+R+++YGNVVLSGGT
Sbjct: 244 DGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGT 303
Query: 308 SLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYM 367
           ++ PG+ DR+ KEL  LA   + ++++APP+R +SVWIGGSILASLSTFQQMWI+KE+Y 
Sbjct: 304 TMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYD 363
Query: 368 ESGPSVVHMKCF 379
           ESGPS+VH KCF
Sbjct: 364 ESGPSIVHRKCF 375
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 0.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 0.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 0.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 0.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-127
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-67
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  612 bits (1581), Expect = 0.0
 Identities = 239/372 (64%), Positives = 301/372 (80%)

Query: 8   EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRG 67
           E  ++VCD+GSG VK GFAGDDAP  VFPS++G+PR++  M+G+GQKD Y GDEAQ+KRG
Sbjct: 4   ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63

Query: 68  VLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIM 127
           +L L +P+  G++ +WD ME++W H F  ELRV  EEHP LLTE PLNPK NREKM +IM
Sbjct: 64  ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 123

Query: 128 FEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187
           FE F +PA YVAIQAVLSLYASGRTTGIV+DSG+GVTH VPIYEGYALPHAI RL+LAG+
Sbjct: 124 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 183

Query: 188 DLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP 247
           DLTDYL   LT+ GY F T+AEREIVRDIKE+L YVA+DF+ E+A +  SS L+K YELP
Sbjct: 184 DLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 243

Query: 248 DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGT 307
           DGQVITIG  +F+ PE LF PS +G+E+ G HE    +IM+ D+D+R+++Y N V+SGGT
Sbjct: 244 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 303

Query: 308 SLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYM 367
           ++ PG+ DR+ KE+  LA   + ++++APP+R +SVWIGGSILASLSTFQQMWITK++Y 
Sbjct: 304 TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 363

Query: 368 ESGPSVVHMKCF 379
           E+GPS+VH KCF
Sbjct: 364 EAGPSIVHRKCF 375
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.92
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.92
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.91
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.9
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.88
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.84
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.83
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.81
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.8
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.77
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.74
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.71
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.7
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.55
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.48
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.41
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.95
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.93
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 98.4
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 97.63
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 96.9
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 96.89
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 96.39
4db3_A327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 96.28
3vgl_A321 Glucokinase; ROK family, transferase; HET: BGC ANP 96.22
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 96.19
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 96.08
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 96.03
2i7n_A360 Pantothenate kinase 1; PANK, transferase; HET: ACO 95.92
2qm1_A326 Glucokinase; alpha-beta structure, putative helix- 95.86
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 95.86
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 95.86
3vov_A302 Glucokinase, hexokinase; ROK, sugar kinase, transf 95.51
4htl_A297 Beta-glucoside kinase; structural genomics, sugar 93.99
2ap1_A327 Putative regulator protein; zinc binding protein, 93.42
3aap_A353 Ectonucleoside triphosphate diphosphohydrolase I; 92.78
2ch5_A347 NAGK protein; transferase, N-acetylglucosamine, gl 92.75
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 92.18
3djc_A266 Type III pantothenate kinase; structural genomics, 90.36
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 90.29
3zx3_A452 Ectonucleoside triphosphate diphosphohydrolase 1; 86.81
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 86.12
1zbs_A291 Hypothetical protein PG1100; alpha-beta protein., 85.57
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.6e-80  Score=597.33  Aligned_cols=370  Identities=36%  Similarity=0.616  Sum_probs=321.6

Q ss_pred             CCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCC----------------------CccccCCCcceeecchhhh
Q 017011            7 YEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNK----------------------NSMIGIGQKDMYFGDEAQA   64 (379)
Q Consensus         7 ~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~----------------------~~~~~~~~~~~~vg~~a~~   64 (379)
                      .+.++||||+||+++|+||+|++.|++++||+++++++.                      ..+.+..+.+++||++|..
T Consensus         3 ~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~   82 (427)
T 3dwl_A            3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALK   82 (427)
T ss_dssp             CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHH
T ss_pred             CCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhh
Confidence            357899999999999999999999999999999998753                      1122445568899999988


Q ss_pred             ccC-CeeeeccccCCcccCHHHHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchh
Q 017011           65 KRG-VLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAV  143 (379)
Q Consensus        65 ~~~-~~~~~~p~~~g~i~~~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~  143 (379)
                      .+. .+.+++|+++|.|.|||.+|++|+|+|.+.|++++.++|+++++|++++...|+++++++||.|++++++++.+++
T Consensus        83 ~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~v  162 (427)
T 3dwl_A           83 KASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV  162 (427)
T ss_dssp             THHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHH
T ss_pred             CcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHH
Confidence            764 6889999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccC--------CceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHH
Q 017011          144 LSLYASG--------RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRD  215 (379)
Q Consensus       144 ~a~~~~g--------~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~  215 (379)
                      +|+|++|        .++|+|||+|+++|+|+||++|+++.+++.++++||++++++|.++|.++++.   ..+.+.+++
T Consensus       163 la~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~  239 (427)
T 3dwl_A          163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAER  239 (427)
T ss_dssp             HHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHH
T ss_pred             HHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHH
Confidence            9999998        68999999999999999999999999999999999999999999999887765   456788999


Q ss_pred             HHHHcccCccCHHHHHHhcccCCCCcceEEc--cCCc--eeccCcccccccccccCCCCCCCC-CCCHHHHHHHHHHhCC
Q 017011          216 IKERLSYVAMDFQKELAMSKESSQLDKQYEL--PDGQ--VITIGAAQFKGPEVLFDPSRMGLE-TEGAHEILVRAIMRSD  290 (379)
Q Consensus       216 ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p~~~--~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~  290 (379)
                      +|+++||++.|+.++.+.........+.|.+  |||.  .+.++.+||++||+||+|++++.+ ..+|+++|.++|++||
T Consensus       240 IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~  319 (427)
T 3dwl_A          240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSP  319 (427)
T ss_dssp             HHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSC
T ss_pred             HHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCC
Confidence            9999999999998887655433333456777  7886  788999999999999999999988 4899999999999999


Q ss_pred             HHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcC--------------CCCceEEEECCCCCccceeehhhhhhccccc
Q 017011          291 MDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLA--------------SPGVGVRVVAPPQRLHSVWIGGSILASLSTF  356 (379)
Q Consensus       291 ~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~--------------~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~  356 (379)
                      +|+|+.|++|||||||+|++|||.+||++||+.++              |...+++|.++++|.+++|+|||++|++++|
T Consensus       320 ~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f  399 (427)
T 3dwl_A          320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF  399 (427)
T ss_dssp             HHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccch
Confidence            99999999999999999999999999999999886              4456789999999999999999999999999


Q ss_pred             ccccccHHHHhhcCCcccccccC
Q 017011          357 QQMWITKEDYMESGPSVVHMKCF  379 (379)
Q Consensus       357 ~~~~itr~ey~e~G~~~~~~k~~  379 (379)
                      +++||||+||+|+|+++++||++
T Consensus       400 ~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          400 GSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             HHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             hheeEEHHHHhhhChHhheeccc
Confidence            99999999999999999999874
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A* Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 379
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 1e-100
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 4e-88
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 7e-64
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 1e-61
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 3e-59
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  295 bits (755), Expect = e-100
 Identities = 143/225 (63%), Positives = 184/225 (81%)

Query: 151 RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAER 210
           RTTGIV+DSG+GVTH VPIYEGYALPHAI RL+LAG+DLTDYL   LT+ GY F T+AER
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 211 EIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSR 270
           EIVRDIKE+L YVA+DF+ E+A +  SS L+K YELPDGQVITIG  +F+ PE LF PS 
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 271 MGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVG 330
           +G+E+ G HE    +IM+ D+D+R+++Y N V+SGGT++ PG+ DR+ KE+  LA   + 
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180

Query: 331 VRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVH 375
           ++++APP+R +SVWIGGSILASLSTFQQMWITK++Y E+GPS+VH
Sbjct: 181 IKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.97
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.96
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.46
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 99.37
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 99.16
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 99.03
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 99.0
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 98.79
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 98.47
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 98.46
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.36
d2d0oa3203 Diol dehydratase-reactivating factor large subunit 95.15
d1nbwa3202 ATPase domain of the glycerol dehydratase reactiva 94.85
d2i7na2212 Pantothenate kinase 1, PANK1 {Human (Homo sapiens) 94.73
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 93.43
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 93.37
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 92.48
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 92.33
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 90.48
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 86.32
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 82.28
d2aa4a2170 N-acetylmannosamine kinase NanK {Escherichia coli 81.89
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-52  Score=365.55  Aligned_cols=225  Identities=64%  Similarity=1.087  Sum_probs=215.1

Q ss_pred             CceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHH
Q 017011          151 RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKE  230 (379)
Q Consensus       151 ~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~  230 (379)
                      ++||||||+|++.|+|+||+||+++.+++.++++||++++++|.++|.+++.......+.+.++++|+.+|+++.+...+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            57999999999999999999999999999999999999999999999998888777778889999999999999999888


Q ss_pred             HHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCC
Q 017011          231 LAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLI  310 (379)
Q Consensus       231 ~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i  310 (379)
                      .............|.+|||+.+.++.+|+.++|+||+|..++.+..+|+++|.++|.+||.|+|+.|++||+||||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence            87776667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccc
Q 017011          311 PGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVH  375 (379)
Q Consensus       311 ~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~  375 (379)
                      |||.+||++||.++.+...++++..+++|.+++|+|||++|++++|++.||||+||+|+|+++||
T Consensus       161 ~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999999998888999999999999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} Back     information, alignment and structure
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure