Citrus Sinensis ID: 017018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAYLEEIGNR
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHccccccEEEEEEEcccccccccccccccEEEEEEEcccHHHHHHHHccHHHHHHccEEEEEccccccccccHHHHHHHHHHcccccccccccccccccHHHHcccccccEEEEEcccccccccccccccccEEEEEcccccHHHHHHHHHHHccccccEEHHHHHHHHHHccccccEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccHHHHEEEEHHHHHHHHHHEEcccccEEEccccccccccccHHccccccccccccccccccccccEEEEccccccccccccccEEccccccEccccccccccccccccEEEEEEEcccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccEEEEEEccccHHHHHHHcccccHcccccEEEEEccccccccccHHHHHHHHHHcccEEccccccccccEEEEEEEEccccEEEEEEEccccccccccccccHHHHHHHcHHccHHHHHHHHHHHHHHHHccccccccccHcccccccEEEEEEcEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgtshrsgflkktndggrLIITTFIGVLIGYFVgrsfqsvsfskihlptsistsfdiagkeeninqisespfsngsspriyvstnprgaellppgivvsesdFFLRrlwgepsedlkkkpkYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFhydgqtsqwdefewsksAIHVSIRRQTKWwyakrflhpdvVAAYEYIFIwdedlgvehfngDKYMELVKKhgldisqpglepnngltwqmtkrrgdqevhkvteekpgwcsdphlppcaafVEIMAPVFSREAWRCVWHMIQNDLvhgwgldfalrrcvepahekigvvdsQWIIHQVipslgsqgqaengkapwegVRARCKNEWSLFQNRLANADKAYLEEIGNR
Flexible Loop (DISEMBL)
mgtshrsgflkktndggrlIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENINQIsespfsngsspRIYVSTNprgaellppgivVSESDFFLRRLWgepsedlkkkpkylltitvglnqkkniDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGldisqpglepnngltwqmTKRRGDQEVHKVTeekpgwcsdphLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIpslgsqgqaeNGKAPWEGVRARCKNEWSLFQNRLANADKAYLEEIGNR
Low Complexity Region (SEG)
MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAYLEEIGNR
Disordered region (IsUnstruct)
**************DGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDI*******************************AELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS***********W******************PGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLG*********APWEGVRARCKNEWSLFQNRLANADKAY*******
Disordered Region (DISOPRED)
******************LIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENI*******************************IVVSESDFF******************LLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV********************RARCKNEWSLFQNRLANADKAYLEE****
Disordered Region (DISEMBL)
MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKR**************GWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLG************EGVRARCKNEWSLFQNRLANADKAYLEEIGNR
Disordered Region (DISPRO)
************TNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAG*****************SPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGS********APWEGVRARCKNEWSLFQNRLANADKAYLEEIG**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAYLEEIGNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
255578131	368	conserved hypothetical protein [Ricinus	0.968	0.997	0.776	1e-180
224106772	382	predicted protein [Populus trichocarpa]	0.989	0.981	0.777	1e-177
359478357	380	PREDICTED: uncharacterized protein LOC10	0.992	0.989	0.769	1e-174
297849098	382	hypothetical protein ARALYDRAFT_888027 [	0.989	0.981	0.742	1e-174
449456016	393	PREDICTED: uncharacterized protein LOC10	0.989	0.954	0.749	1e-173
297826107	381	hypothetical protein ARALYDRAFT_481676 [	0.981	0.976	0.752	1e-171
30683843	374	uncharacterized protein [Arabidopsis tha	0.970	0.983	0.753	1e-171
18390845	382	uncharacterized protein [Arabidopsis tha	0.989	0.981	0.750	1e-169
297746271	356	unnamed protein product [Vitis vinifera]	0.928	0.988	0.773	1e-163
356541916	391	PREDICTED: uncharacterized protein LOC10	0.960	0.930	0.701	1e-163

>gi|255578131|ref|XP_002529935.1| conserved hypothetical protein [Ricinus communis] gi|223530565|gb|EEF32443.1| conserved hypothetical protein [Ricinus communis]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 292/376 (77%), Positives = 335/376 (89%), Gaps = 9/376 (2%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
           MG+ HRSG  +KTND  RLI+TT +GV+ G+FVG SF SVS +KIH+P+   +S D++  
Sbjct: 1   MGSIHRSGLSRKTNDSARLIVTTILGVVFGFFVGISFPSVSLTKIHIPSGFISSTDMSST 60

Query: 61  EENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKP 120
           ++NI          G++P+IY   NPRGAELLPPGIVVSESDF+LRRLWGEPSEDLKKKP
Sbjct: 61  DQNIR---------GNAPKIYAPRNPRGAELLPPGIVVSESDFYLRRLWGEPSEDLKKKP 111

Query: 121 KYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTK 180
           KYL+T TVG +Q+ NI+  +KKFS+DF I+LFHYDG+ S+WD+FEWS++AIHVS+RRQTK
Sbjct: 112 KYLVTFTVGYDQRNNINAAIKKFSDDFTILLFHYDGRVSEWDQFEWSRTAIHVSVRRQTK 171

Query: 181 WWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTW 240
           WWYAKRFLHPD+VAAYEYIFIWDEDLGVEHFN DKY+ELVKKHGL+ISQPGLEPNNGLTW
Sbjct: 172 WWYAKRFLHPDIVAAYEYIFIWDEDLGVEHFNADKYIELVKKHGLEISQPGLEPNNGLTW 231

Query: 241 QMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHG 300
           QMTKRRGD+EVHK TEEKPGWCSDP LPPCAAFVEIMAPVFSREAWRCVWHM+QNDLVHG
Sbjct: 232 QMTKRRGDKEVHKDTEEKPGWCSDPRLPPCAAFVEIMAPVFSREAWRCVWHMVQNDLVHG 291

Query: 301 WGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSL 360
           WGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLG+QG++E GKAPWEGVRARCKNEWS+
Sbjct: 292 WGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGNQGKSEKGKAPWEGVRARCKNEWSM 351

Query: 361 FQNRLANADKAYLEEI 376
           FQ+RLA+ADKAYL +I
Sbjct: 352 FQSRLADADKAYLSQI 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106772|ref|XP_002314280.1| predicted protein [Populus trichocarpa] gi|222850688|gb|EEE88235.1| predicted protein [Populus trichocarpa]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/378 (77%), Positives = 336/378 (88%), Gaps = 3/378 (0%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
           MGT HRSG  +KTND  RLII T +GV  G+FVG SF +V+F+KIH+ +S + S DI+  
Sbjct: 1   MGTIHRSGVYRKTNDSARLIIVTIVGVAFGFFVGISFPAVTFTKIHIHSSFTLSLDISIV 60

Query: 61  EENINQISESPFSNGSSPR---IYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLK 117
            +N  + S+S  + GS      IYV TNPRGAELLPPGIVV+ESDF+LRRLWGEPSED+ 
Sbjct: 61  NQNEFRRSKSLETLGSGSNVTNIYVPTNPRGAELLPPGIVVAESDFYLRRLWGEPSEDML 120

Query: 118 KKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRR 177
           KKPKYLLT TVG +Q+ NI+  VKKFS+DFQI+LFHYDG+TS+WD+FEWSKSAIHVSI R
Sbjct: 121 KKPKYLLTFTVGYDQRNNINAAVKKFSDDFQILLFHYDGRTSEWDQFEWSKSAIHVSIMR 180

Query: 178 QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG 237
           QTKWWYAKRFLHPD+V AYEYIFIWDEDLGVEHFNG+KY++L+KKHGL+ISQPGLEPNNG
Sbjct: 181 QTKWWYAKRFLHPDIVGAYEYIFIWDEDLGVEHFNGEKYIQLIKKHGLEISQPGLEPNNG 240

Query: 238 LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL 297
           LTWQMTKRRGD+EVHK TEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL
Sbjct: 241 LTWQMTKRRGDREVHKDTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL 300

Query: 298 VHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNE 357
           VHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQG++E GKAPWEGVRARC+NE
Sbjct: 301 VHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGKSEKGKAPWEGVRARCRNE 360

Query: 358 WSLFQNRLANADKAYLEE 375
           WSLF++RLA+A++AY+ +
Sbjct: 361 WSLFRSRLADAEQAYISQ 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478357|ref|XP_002285240.2| PREDICTED: uncharacterized protein LOC100267242 isoform 1 [Vitis vinifera] gi|359478359|ref|XP_003632112.1| PREDICTED: uncharacterized protein LOC100267242 isoform 2 [Vitis vinifera]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/377 (76%), Positives = 333/377 (88%), Gaps = 1/377 (0%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
           MGT HRSG LKK++D  RLIITT +GV+ GYFVG SF S S +KI+L +S+ +S D+A  
Sbjct: 1   MGTLHRSGVLKKSHDSARLIITTIMGVVFGYFVGVSFPSASLTKINLSSSLMSSLDVATS 60

Query: 61  EENINQISES-PFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKK 119
           E   ++   S   + G+ P+IYV TNPRGAE LPPGIVVSESDF+LRRLWG PSEDLKKK
Sbjct: 61  EHKSSRSKSSETLTPGTVPKIYVPTNPRGAESLPPGIVVSESDFYLRRLWGLPSEDLKKK 120

Query: 120 PKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQT 179
           PKYL+  TVGL+Q+KNID  VKKFSEDFQI+LFHYDG+TS+WD+FEWSK+AIHVS R+QT
Sbjct: 121 PKYLVVFTVGLDQRKNIDESVKKFSEDFQILLFHYDGRTSEWDQFEWSKTAIHVSARKQT 180

Query: 180 KWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLT 239
           KWWYAKRFLHPDVVAAYEYIFIWDEDL V+HFNG+KY+ELVKKHGL+ISQPGLEPNNGLT
Sbjct: 181 KWWYAKRFLHPDVVAAYEYIFIWDEDLDVKHFNGEKYIELVKKHGLEISQPGLEPNNGLT 240

Query: 240 WQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVH 299
           WQMTKRRGD+EVHK+TEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVH
Sbjct: 241 WQMTKRRGDREVHKITEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVH 300

Query: 300 GWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWS 359
           GWGLDFALRRCVEPAHEKIGVVDSQWIIH+V+PSLGSQG++  GK PW GVR RC++EW+
Sbjct: 301 GWGLDFALRRCVEPAHEKIGVVDSQWIIHKVVPSLGSQGESAGGKPPWHGVRERCRSEWA 360

Query: 360 LFQNRLANADKAYLEEI 376
            FQ RL +AD+AY+ ++
Sbjct: 361 QFQARLTSADQAYVAQL 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849098|ref|XP_002892430.1| hypothetical protein ARALYDRAFT_888027 [Arabidopsis lyrata subsp. lyrata] gi|297338272|gb|EFH68689.1| hypothetical protein ARALYDRAFT_888027 [Arabidopsis lyrata subsp. lyrata]

 Score =  615 bits (1586), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 280/377 (74%), Positives = 332/377 (88%), Gaps = 2/377 (0%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
           MGT HRSG  ++TN+  +LIITT +G++ G+FVG +    +F KI LP+ + +S D+A  
Sbjct: 1   MGTMHRSGAPRRTNENAKLIITTIVGMVFGFFVGITLPLGAFRKISLPSGLISSLDVAMS 60

Query: 61  EENINQISESP--FSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKK 118
           +  +     SP  F +  SP+IYV TNP GAELLPPGI+V+E+DF+LRRLWGEPSEDLKK
Sbjct: 61  DGKLFSGGRSPEDFGSRKSPKIYVPTNPHGAELLPPGIIVAETDFYLRRLWGEPSEDLKK 120

Query: 119 KPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQ 178
           KPKYL+T TVGL Q+ NI+  V KFSEDFQI+LFHYDG+T++WD+FEWSK+AIH+S ++Q
Sbjct: 121 KPKYLVTFTVGLEQRNNINAAVLKFSEDFQILLFHYDGRTTEWDQFEWSKNAIHISAKKQ 180

Query: 179 TKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGL 238
           TKWWYAKRFLHPDVV+AYEYIFIWDEDLGV+HFN D+Y+ELVKKHGL+ISQPGLEPNNGL
Sbjct: 181 TKWWYAKRFLHPDVVSAYEYIFIWDEDLGVKHFNADRYIELVKKHGLEISQPGLEPNNGL 240

Query: 239 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV 298
           TW+MTKRRGD++VHK T+EKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV
Sbjct: 241 TWEMTKRRGDRDVHKETKEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV 300

Query: 299 HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEW 358
           HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQG++E GK+PW+GVR RC+NEW
Sbjct: 301 HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGESEKGKSPWQGVRERCRNEW 360

Query: 359 SLFQNRLANADKAYLEE 375
           S+FQNR+A ADKAY+E+
Sbjct: 361 SMFQNRVAEADKAYMEQ 377

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456016|ref|XP_004145746.1| PREDICTED: uncharacterized protein LOC101216740 [Cucumis sativus] gi|449524368|ref|XP_004169195.1| PREDICTED: uncharacterized LOC101216740 [Cucumis sativus]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 284/379 (74%), Positives = 330/379 (87%), Gaps = 4/379 (1%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
           MG +HR G  +K NDG R+I+TT +GV+ G+F+G SF +VS +KI+LP+SI +S D+A  
Sbjct: 1   MGNAHRGG-TRKANDGARIILTTLVGVVFGFFLGASFPTVSLTKINLPSSIISSLDVAMD 59

Query: 61  EENINQISESPFSNGSSPRI---YVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLK 117
            +   +   +   N  SP+I   YV TNPRGAE LPPGIV S SDF+LRRLWGEPSEDL 
Sbjct: 60  VQKSPRTRITETHNQGSPKIPKIYVPTNPRGAESLPPGIVASGSDFYLRRLWGEPSEDLN 119

Query: 118 KKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRR 177
           KKPKYL+T TVG +Q+KNID  VKKFS+DF I+LFHYDG+ ++WD++EWSK+AIH+S+++
Sbjct: 120 KKPKYLVTFTVGFDQRKNIDAAVKKFSDDFTILLFHYDGRITEWDQYEWSKNAIHISVKK 179

Query: 178 QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG 237
           QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFN +KY+ELVKKHGL+ISQPGLEPNNG
Sbjct: 180 QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNAEKYIELVKKHGLEISQPGLEPNNG 239

Query: 238 LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL 297
           LTWQMTKRRGD+EVHK TEEK GWCSDP LPPCAAFVEIMAPVFSREAWRCVWH+IQNDL
Sbjct: 240 LTWQMTKRRGDREVHKDTEEKAGWCSDPRLPPCAAFVEIMAPVFSREAWRCVWHLIQNDL 299

Query: 298 VHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNE 357
           VHGWGLDFALRRCVEPAHEKIGVVDSQWI+HQVIPSLGSQG++ENGKAPWEGVR RC+ E
Sbjct: 300 VHGWGLDFALRRCVEPAHEKIGVVDSQWIVHQVIPSLGSQGKSENGKAPWEGVRERCRTE 359

Query: 358 WSLFQNRLANADKAYLEEI 376
           W+ FQ+RLANADKAYL +I
Sbjct: 360 WAEFQSRLANADKAYLAQI 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826107|ref|XP_002880936.1| hypothetical protein ARALYDRAFT_481676 [Arabidopsis lyrata subsp. lyrata] gi|297326775|gb|EFH57195.1| hypothetical protein ARALYDRAFT_481676 [Arabidopsis lyrata subsp. lyrata]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/376 (75%), Positives = 331/376 (88%), Gaps = 4/376 (1%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIA-- 58
           MGT HRSG  ++TN+  ++IITT +G++ G F+G +  S+SF KI+LP+ + +S D+A  
Sbjct: 1   MGTMHRSGAPRRTNENAKVIITTILGIVFGTFIGITLPSLSF-KINLPSRLISSLDVAIS 59

Query: 59  -GKEENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLK 117
            GK  +    S   F +   P IYV TNPRGAELLPPGIVV+++DF+LRRLWGEP+EDLK
Sbjct: 60  DGKLLSGGDKSPEDFGSRKFPEIYVPTNPRGAELLPPGIVVAKTDFYLRRLWGEPNEDLK 119

Query: 118 KKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRR 177
           KKPKYL+T TVG  Q+ +I+ +VKKFSEDFQI+LFHYDG+T++WD+FEWSKSAIH+S R+
Sbjct: 120 KKPKYLVTFTVGFEQRNHINGVVKKFSEDFQILLFHYDGRTTEWDQFEWSKSAIHISTRK 179

Query: 178 QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG 237
           QTKWWYAKRFLHPDVV+AYEYIFIWDEDLGVEHFN DKY+ELVKKHGL+ISQPGLEPNNG
Sbjct: 180 QTKWWYAKRFLHPDVVSAYEYIFIWDEDLGVEHFNADKYIELVKKHGLEISQPGLEPNNG 239

Query: 238 LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL 297
           LTW+MTKRRGD+EVHK T+EKPGWC DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL
Sbjct: 240 LTWEMTKRRGDREVHKDTKEKPGWCKDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL 299

Query: 298 VHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNE 357
           VHGWGLDFALRRCVEPAHEKIGVVDSQWIIH+VIPSLGSQG++ENGKAPW+GVR RCK E
Sbjct: 300 VHGWGLDFALRRCVEPAHEKIGVVDSQWIIHKVIPSLGSQGKSENGKAPWQGVRERCKME 359

Query: 358 WSLFQNRLANADKAYL 373
           W++FQNRLA+ADK YL
Sbjct: 360 WTMFQNRLADADKEYL 375

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683843|ref|NP_850118.1| uncharacterized protein [Arabidopsis thaliana] gi|30683846|ref|NP_850119.1| uncharacterized protein [Arabidopsis thaliana] gi|238479383|ref|NP_001154537.1| uncharacterized protein [Arabidopsis thaliana] gi|62320360|dbj|BAD94744.1| hypothetical protein [Arabidopsis thaliana] gi|330253009|gb|AEC08103.1| uncharacterized protein [Arabidopsis thaliana] gi|330253010|gb|AEC08104.1| uncharacterized protein [Arabidopsis thaliana] gi|330253011|gb|AEC08105.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 281/373 (75%), Positives = 329/373 (88%), Gaps = 5/373 (1%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
           MGT HRSG  ++TN+  ++IITT +G++ G F+G +  S+SF KI+LP+ + +S D+A  
Sbjct: 1   MGTMHRSGAPRRTNENAKVIITTILGIVFGTFIGITLPSLSF-KINLPSRLISSLDVAIS 59

Query: 61  EENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKP 120
            +     S   F +   P IYV TNPRGAELLPPGIVV+++DF+LRRLWGEP+EDLKKKP
Sbjct: 60  GDK----SPEDFGSRKFPEIYVPTNPRGAELLPPGIVVAKTDFYLRRLWGEPNEDLKKKP 115

Query: 121 KYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTK 180
           KYL+T TVG  Q+ +I+ +VKKFSEDFQI+LFHYDG+T++WD+FEWSKSAIH+S R+QTK
Sbjct: 116 KYLVTFTVGFEQRNHINGVVKKFSEDFQILLFHYDGRTTEWDQFEWSKSAIHISTRKQTK 175

Query: 181 WWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTW 240
           WWYAKRFLHPDVV+AYEYIFIWDEDLGVEHFN DKY+ELVKKHGL+ISQPGLEPNNGLTW
Sbjct: 176 WWYAKRFLHPDVVSAYEYIFIWDEDLGVEHFNADKYIELVKKHGLEISQPGLEPNNGLTW 235

Query: 241 QMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHG 300
           +MTKRRGD+EVHK T+EKPGWC DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHG
Sbjct: 236 EMTKRRGDREVHKDTKEKPGWCKDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHG 295

Query: 301 WGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSL 360
           WGLDFALRRCVEPAHEKIGVVDSQWIIH+VIPSLGSQG++ENGKAPW+GVR RCK EW++
Sbjct: 296 WGLDFALRRCVEPAHEKIGVVDSQWIIHKVIPSLGSQGKSENGKAPWQGVRDRCKMEWTM 355

Query: 361 FQNRLANADKAYL 373
           FQNRLA+ADK YL
Sbjct: 356 FQNRLADADKEYL 368

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390845|ref|NP_563805.1| uncharacterized protein [Arabidopsis thaliana] gi|79317279|ref|NP_001030994.1| uncharacterized protein [Arabidopsis thaliana] gi|15810567|gb|AAL07171.1| putative storage protein [Arabidopsis thaliana] gi|20259569|gb|AAM14127.1| putative storage protein [Arabidopsis thaliana] gi|332190112|gb|AEE28233.1| uncharacterized protein [Arabidopsis thaliana] gi|332190113|gb|AEE28234.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/377 (75%), Positives = 332/377 (88%), Gaps = 2/377 (0%)

Query: 1   MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
           MGT HRSG  ++TN+  +LIITT +GV+ G+FVG +    SF KI LP+ + +S D+A  
Sbjct: 1   MGTMHRSGAPRRTNENAKLIITTIVGVVFGFFVGITLPLGSFRKISLPSGLMSSLDVAMS 60

Query: 61  EENINQISESPFSNGS--SPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKK 118
           +  +     SP   GS  SP+IYV TNP GAELLPPGI+V+E+DF+LRRLWGEPSEDLKK
Sbjct: 61  DGKLFSGGRSPEDIGSRKSPKIYVPTNPHGAELLPPGIIVAETDFYLRRLWGEPSEDLKK 120

Query: 119 KPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQ 178
           KPKYL+T TVG  Q+ NI+  VKKFSEDFQI+LFHYDG+T++WD+FEWSK+AIH+S ++Q
Sbjct: 121 KPKYLVTFTVGFEQRNNINAAVKKFSEDFQILLFHYDGRTTEWDQFEWSKNAIHISAKKQ 180

Query: 179 TKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGL 238
           TKWWYAKRFLHPDVV+AYEYIFIWDEDLGVEHFN D+Y+ELVKKHGL+ISQPGLEPNNGL
Sbjct: 181 TKWWYAKRFLHPDVVSAYEYIFIWDEDLGVEHFNADRYVELVKKHGLEISQPGLEPNNGL 240

Query: 239 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV 298
           TW+MTKRRGD++VHK T+EKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV
Sbjct: 241 TWEMTKRRGDRDVHKETKEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV 300

Query: 299 HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEW 358
           HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQG++E GK+PW+GVR RC+NEW
Sbjct: 301 HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGESEEGKSPWQGVRERCRNEW 360

Query: 359 SLFQNRLANADKAYLEE 375
           ++FQNR+A ADKAY+E+
Sbjct: 361 TMFQNRVAEADKAYMEQ 377

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746271|emb|CBI16327.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/353 (77%), Positives = 314/353 (88%), Gaps = 1/353 (0%)

Query: 25  IGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENINQISES-PFSNGSSPRIYVS 83
           +GV+ GYFVG SF S S +KI+L +S+ +S D+A  E   ++   S   + G+ P+IYV 
Sbjct: 1   MGVVFGYFVGVSFPSASLTKINLSSSLMSSLDVATSEHKSSRSKSSETLTPGTVPKIYVP 60

Query: 84  TNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKF 143
           TNPRGAE LPPGIVVSESDF+LRRLWG PSEDLKKKPKYL+  TVGL+Q+KNID  VKKF
Sbjct: 61  TNPRGAESLPPGIVVSESDFYLRRLWGLPSEDLKKKPKYLVVFTVGLDQRKNIDESVKKF 120

Query: 144 SEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWD 203
           SEDFQI+LFHYDG+TS+WD+FEWSK+AIHVS R+QTKWWYAKRFLHPDVVAAYEYIFIWD
Sbjct: 121 SEDFQILLFHYDGRTSEWDQFEWSKTAIHVSARKQTKWWYAKRFLHPDVVAAYEYIFIWD 180

Query: 204 EDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCS 263
           EDL V+HFNG+KY+ELVKKHGL+ISQPGLEPNNGLTWQMTKRRGD+EVHK+TEEKPGWCS
Sbjct: 181 EDLDVKHFNGEKYIELVKKHGLEISQPGLEPNNGLTWQMTKRRGDREVHKITEEKPGWCS 240

Query: 264 DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDS 323
           DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDS
Sbjct: 241 DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDS 300

Query: 324 QWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAYLEEI 376
           QWIIH+V+PSLGSQG++  GK PW GVR RC++EW+ FQ RL +AD+AY+ ++
Sbjct: 301 QWIIHKVVPSLGSQGESAGGKPPWHGVRERCRSEWAQFQARLTSADQAYVAQL 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541916|ref|XP_003539418.1| PREDICTED: uncharacterized protein LOC100785818 [Glycine max]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/388 (70%), Positives = 324/388 (83%), Gaps = 24/388 (6%)

Query: 5   HRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENI 64
           HR+  LK++ND  R+IIT  +G+  G+F+G     +S S +HL   +  SFD+   E  I
Sbjct: 2   HRNS-LKRSNDSTRIIITAIMGIAFGFFIG-----ISISSVHLTKPVGNSFDVPVAESEI 55

Query: 65  N----QISESPF----SNGSS----------PRIYVSTNPRGAELLPPGIVVSESDFFLR 106
           +    +++ SP     S+G+           P+I+V++NPRGAE LPPGIVVSESDF+LR
Sbjct: 56  DRFSAEVNRSPAVIDESSGTKNLETLGSIRLPKIFVASNPRGAESLPPGIVVSESDFYLR 115

Query: 107 RLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEW 166
           RLWGEPSEDLKKKPKYL+T TVG  Q+ NI+  VKKFS+DF I+LFHYDG+TS+WD+FEW
Sbjct: 116 RLWGEPSEDLKKKPKYLVTFTVGYEQRHNINATVKKFSDDFAILLFHYDGRTSEWDQFEW 175

Query: 167 SKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLD 226
           S++AIHVS R+QTKWWYAKRFLHPD+V+AYEYIFIWDEDLGVEHFN DKY+ LVKK+GL+
Sbjct: 176 SRNAIHVSARKQTKWWYAKRFLHPDIVSAYEYIFIWDEDLGVEHFNADKYIHLVKKYGLE 235

Query: 227 ISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAW 286
           ISQPGLEPNNGLTW+MTKRRGD+EVH VTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAW
Sbjct: 236 ISQPGLEPNNGLTWEMTKRRGDKEVHMVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAW 295

Query: 287 RCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAP 346
           RCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGV+DSQWI+HQVIPSLG+QG+++ GK P
Sbjct: 296 RCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVIDSQWIVHQVIPSLGNQGESDKGKMP 355

Query: 347 WEGVRARCKNEWSLFQNRLANADKAYLE 374
           W+ VRARCK+EW+ FQ R+ NADK+YLE
Sbjct: 356 WDSVRARCKSEWAQFQLRVTNADKSYLE 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2205140	382	AT1G08040 [Arabidopsis thalian	0.989	0.981	0.750	4.2e-166
TAIR|locus:2057557	374	AT2G28310 "AT2G28310" [Arabido	0.970	0.983	0.753	8.1e-163
TAIR|locus:2008640	404	AT1G67850 "AT1G67850" [Arabido	0.992	0.930	0.664	2.9e-151
TAIR|locus:2086721	398	AT3G27470 "AT3G27470" [Arabido	0.815	0.776	0.729	2.1e-143
TAIR|locus:2031905	401	AT1G13000 [Arabidopsis thalian	0.989	0.935	0.617	8.3e-138
TAIR|locus:2079291	396	AT3G26440 [Arabidopsis thalian	0.989	0.946	0.619	1.3e-132
TAIR|locus:504956279	381	AT1G24570 [Arabidopsis thalian	0.963	0.958	0.589	4.3e-125
TAIR|locus:2124608	389	AT4G18530 "AT4G18530" [Arabido	0.802	0.781	0.429	8.2e-67
TAIR|locus:2008425	425	AT1G61240 [Arabidopsis thalian	0.686	0.611	0.479	4.1e-65
TAIR|locus:2202124	438	AT1G11170 [Arabidopsis thalian	0.643	0.557	0.494	1.6e-63

TAIR|locus:2205140 AT1G08040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
 Identities = 283/377 (75%), Positives = 332/377 (88%)

Query:     1 MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
             MGT HRSG  ++TN+  +LIITT +GV+ G+FVG +    SF KI LP+ + +S D+A  
Sbjct:     1 MGTMHRSGAPRRTNENAKLIITTIVGVVFGFFVGITLPLGSFRKISLPSGLMSSLDVAMS 60

Query:    61 EENINQISESPFSNGS--SPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKK 118
             +  +     SP   GS  SP+IYV TNP GAELLPPGI+V+E+DF+LRRLWGEPSEDLKK
Sbjct:    61 DGKLFSGGRSPEDIGSRKSPKIYVPTNPHGAELLPPGIIVAETDFYLRRLWGEPSEDLKK 120

Query:   119 KPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQ 178
             KPKYL+T TVG  Q+ NI+  VKKFSEDFQI+LFHYDG+T++WD+FEWSK+AIH+S ++Q
Sbjct:   121 KPKYLVTFTVGFEQRNNINAAVKKFSEDFQILLFHYDGRTTEWDQFEWSKNAIHISAKKQ 180

Query:   179 TKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGL 238
             TKWWYAKRFLHPDVV+AYEYIFIWDEDLGVEHFN D+Y+ELVKKHGL+ISQPGLEPNNGL
Sbjct:   181 TKWWYAKRFLHPDVVSAYEYIFIWDEDLGVEHFNADRYVELVKKHGLEISQPGLEPNNGL 240

Query:   239 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV 298
             TW+MTKRRGD++VHK T+EKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV
Sbjct:   241 TWEMTKRRGDRDVHKETKEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLV 300

Query:   299 HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEW 358
             HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQG++E GK+PW+GVR RC+NEW
Sbjct:   301 HGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGESEEGKSPWQGVRERCRNEW 360

Query:   359 SLFQNRLANADKAYLEE 375
             ++FQNR+A ADKAY+E+
Sbjct:   361 TMFQNRVAEADKAYMEQ 377

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2057557 AT2G28310 "AT2G28310" [Arabidopsis thaliana (taxid:3702)]

 Score = 1585 (563.0 bits), Expect = 8.1e-163, P = 8.1e-163
 Identities = 281/373 (75%), Positives = 329/373 (88%)

Query:     1 MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
             MGT HRSG  ++TN+  ++IITT +G++ G F+G +  S+SF KI+LP+ + +S D+A  
Sbjct:     1 MGTMHRSGAPRRTNENAKVIITTILGIVFGTFIGITLPSLSF-KINLPSRLISSLDVAIS 59

Query:    61 EENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKP 120
              +     S   F +   P IYV TNPRGAELLPPGIVV+++DF+LRRLWGEP+EDLKKKP
Sbjct:    60 GDK----SPEDFGSRKFPEIYVPTNPRGAELLPPGIVVAKTDFYLRRLWGEPNEDLKKKP 115

Query:   121 KYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTK 180
             KYL+T TVG  Q+ +I+ +VKKFSEDFQI+LFHYDG+T++WD+FEWSKSAIH+S R+QTK
Sbjct:   116 KYLVTFTVGFEQRNHINGVVKKFSEDFQILLFHYDGRTTEWDQFEWSKSAIHISTRKQTK 175

Query:   181 WWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTW 240
             WWYAKRFLHPDVV+AYEYIFIWDEDLGVEHFN DKY+ELVKKHGL+ISQPGLEPNNGLTW
Sbjct:   176 WWYAKRFLHPDVVSAYEYIFIWDEDLGVEHFNADKYIELVKKHGLEISQPGLEPNNGLTW 235

Query:   241 QMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHG 300
             +MTKRRGD+EVHK T+EKPGWC DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHG
Sbjct:   236 EMTKRRGDREVHKDTKEKPGWCKDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHG 295

Query:   301 WGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSL 360
             WGLDFALRRCVEPAHEKIGVVDSQWIIH+VIPSLGSQG++ENGKAPW+GVR RCK EW++
Sbjct:   296 WGLDFALRRCVEPAHEKIGVVDSQWIIHKVIPSLGSQGKSENGKAPWQGVRDRCKMEWTM 355

Query:   361 FQNRLANADKAYL 373
             FQNRLA+ADK YL
Sbjct:   356 FQNRLADADKEYL 368

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2008640 AT1G67850 "AT1G67850" [Arabidopsis thaliana (taxid:3702)]

 Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
 Identities = 260/391 (66%), Positives = 321/391 (82%)

Query:     1 MGTSHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGK 60
             MG   RS   +K+ DG ++I T F GV  G+ +G SF S+S +K+ LPT+   S D++  
Sbjct:     1 MGIFSRSSISRKSKDGMKIIATAFFGVTFGFLIGISFPSLSITKVSLPTNFLPSNDLSYI 60

Query:    61 EENINQI-----------SESPFSNGSSP----RIYVSTNPRGAELLPPGIVVSESDFFL 105
             EE  ++I           S+   S+ S+P    +I+V +NPRGAE+LPPG+V +ESDF+L
Sbjct:    61 EEKGSKIATPESHKAWSSSKGNDSSSSTPIDKSKIWVPSNPRGAEMLPPGMVAAESDFYL 120

Query:   106 RRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFE 165
             RRLWG P EDLK +P+YL T TVG+NQK NID  VKKFSE+F I+LFHYDG+ ++WDEFE
Sbjct:   121 RRLWGLPHEDLKSEPRYLATFTVGINQKANIDACVKKFSENFTIVLFHYDGRVTEWDEFE 180

Query:   166 WSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGL 225
             WSK+AIH+S+R+QTKWWYAKRFLHPD+VA Y+YIF+WDEDLGVEHFN ++Y+++VKKHGL
Sbjct:   181 WSKTAIHISVRKQTKWWYAKRFLHPDIVARYDYIFVWDEDLGVEHFNAEEYVKMVKKHGL 240

Query:   226 DISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREA 285
             +ISQPGLEPN GLTWQMTKRRGD EVHK+TEE+PGWCSDPHLPPCAAFVEIMAPVFSR A
Sbjct:   241 EISQPGLEPNQGLTWQMTKRRGDMEVHKITEERPGWCSDPHLPPCAAFVEIMAPVFSRNA 300

Query:   286 WRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKA 345
             WRCVWH+IQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQW++HQ  PSLG+QG+A +GKA
Sbjct:   301 WRCVWHVIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWVVHQSFPSLGNQGEATDGKA 360

Query:   346 PWEGVRARCKNEWSLFQNRLANADKAYLEEI 376
             PW+GVR RCK EW++FQ+R+ANA+K Y + +
Sbjct:   361 PWQGVRDRCKKEWTMFQSRMANAEKDYFKSL 391

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2086721 AT3G27470 "AT3G27470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1313 (467.3 bits), Expect = 2.1e-143, Sum P(2) = 2.1e-143
 Identities = 226/310 (72%), Positives = 271/310 (87%)

Query:    65 NQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLL 124
             N I + P+ N +  +I+VSTNPRGAE LPP IV  ESDF+LRRLWG+P+EDL  K +YL+
Sbjct:    77 NDIPDPPY-NYNDTKIWVSTNPRGAERLPPDIVTPESDFYLRRLWGDPNEDLTVKQRYLV 135

Query:   125 TITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYA 184
             T TVG +Q+KNID ++KKFS++F IMLFHYDG+ S+W+EFEWSK AIHVSIR+QTKWWYA
Sbjct:   136 TFTVGYDQRKNIDTVLKKFSDNFSIMLFHYDGRASEWEEFEWSKRAIHVSIRKQTKWWYA 195

Query:   185 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTK 244
             KRFLHPD+VA YEYIFIWDEDLGVEHF+ +KY+ +VKKHGL+ISQPGLEP  GLTW+MTK
Sbjct:   196 KRFLHPDIVAPYEYIFIWDEDLGVEHFDSEKYLAVVKKHGLEISQPGLEPYEGLTWEMTK 255

Query:   245 RRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLD 304
             +R D EVHK  EE+ GWC+DP+LPPCAAFVEIMAPVFSR+AWRCVWHMIQNDL+HGWGLD
Sbjct:   256 KRDDTEVHKHAEERNGWCTDPNLPPCAAFVEIMAPVFSRKAWRCVWHMIQNDLIHGWGLD 315

Query:   305 FALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNR 364
             FA+R+CV+ AHEKIGVVD+QWIIHQ +PSLG+QGQ E GK PWEGVR RC+ EW++FQ+R
Sbjct:   316 FAVRKCVQNAHEKIGVVDAQWIIHQGVPSLGNQGQPEQGKQPWEGVRERCRREWTMFQDR 375

Query:   365 LANADKAYLE 374
             L +A+KAY E
Sbjct:   376 LDDAEKAYFE 385

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2031905 AT1G13000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
 Identities = 241/390 (61%), Positives = 310/390 (79%)

Query:     4 SHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEEN 63
             S+R    KK NDG RLII TF+G+++G+F+G SF ++S +K++ P+ I  S DI   E+ 
Sbjct:     8 SNRCSNGKKPNDGMRLIIATFVGIVVGFFLGISFPTLSLTKLNFPSGILPSVDITYVEDE 67

Query:    64 INQISES----------PF--SNGS-SP--RIYVSTNPRGAELLPPGIVVSESDFFLRRL 108
               + S            P   +N S +P  +I+V +NPRGAE+L PGI+  ESD++LRRL
Sbjct:    68 TPETSSETLLHTWSSRGPLHGANSSDAPHWKIWVPSNPRGAEMLTPGIIAPESDYYLRRL 127

Query:   109 WGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSK 168
             WG P ED+  KPKYL+  TVG  QK N+D  VKKFS+DF I+LFHYDG+T++W+E EWSK
Sbjct:   128 WGLPEEDVPVKPKYLIAFTVGFGQKVNVDACVKKFSKDFTIVLFHYDGRTTEWEELEWSK 187

Query:   169 SAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS 228
              AIHVS+ +QTKWWYAKRFLHPD+VA Y+Y+FIWDEDLG+E+F+ ++Y+ L+KKHGL+IS
Sbjct:   188 RAIHVSVPKQTKWWYAKRFLHPDIVAPYDYVFIWDEDLGLENFDVEEYIRLIKKHGLEIS 247

Query:   229 QPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRC 288
             QP +E    +TW++TKR+   EVHK  +EKPG C+DPHLPPCAAF+EIMAPVFSR+AWRC
Sbjct:   248 QPAVESKKKITWEITKRKTKGEVHKDAKEKPGRCNDPHLPPCAAFIEIMAPVFSRDAWRC 307

Query:   289 VWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWE 348
             VWHMIQNDLVHGWGLDFALR+CVEPAHEKIGVVDSQWIIHQ +PSLGSQG+A++GKA W+
Sbjct:   308 VWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIIHQSLPSLGSQGEAQDGKAGWQ 367

Query:   349 GVRARCKNEWSLFQNRLANADKAYLEEIGN 378
             GVR RCK EW++FQ+R+A+++K YL+EI N
Sbjct:   368 GVRDRCKREWTMFQSRMASSEKQYLKEIAN 397

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2079291 AT3G26440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
 Identities = 236/381 (61%), Positives = 298/381 (78%)

Query:     4 SHRSGFLKKTNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSI----STSFDIAG 59
             S R    KK NDG  L+I+ F G++IG+ +G SF ++S +K++ P+SI    +T +    
Sbjct:     8 SMRCSNSKKPNDGMMLVISIFAGIVIGFLLGISFPTLSLTKMNFPSSILPSVATVYIENE 67

Query:    60 KEENINQISESPFSNGSSP-RIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKK 118
             K E  ++ S    S+ S   +I+V +NPRGAE+LPP  V +ESDF+LRRLWG P +DL  
Sbjct:    68 KPEKSSKTSSQNESDASHHHKIWVPSNPRGAEMLPPSFVAAESDFYLRRLWGLPKDDLPV 127

Query:   119 -KPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRR 177
              KPKYL+  TV   Q+KNID  VKKFS++F I+LFHYDG+TS++DEFEWSK AIHVS+ +
Sbjct:   128 VKPKYLVAFTVSYEQRKNIDACVKKFSDNFTIVLFHYDGKTSEYDEFEWSKRAIHVSVPK 187

Query:   178 QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG 237
             QTKWWYAKRFLHPD++A YEYIFIWDEDLGVE+F+ ++Y+++V KHGL+ISQP +E    
Sbjct:   188 QTKWWYAKRFLHPDIIAPYEYIFIWDEDLGVENFDAEEYIKIVNKHGLEISQPAVESRKS 247

Query:   238 LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL 297
             +TW++TKR    EVHK  EEKPG C+DPHLPPCA F+EIMAPVFSREAWRCVWHMIQNDL
Sbjct:   248 ITWKITKRIPGIEVHKEVEEKPGRCNDPHLPPCAGFIEIMAPVFSREAWRCVWHMIQNDL 307

Query:   298 VHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNE 357
             VHGWGLDFALR+CVEPAHEKIGVVDSQWIIHQ IPSLGSQG A+ GK  ++GVR RCK E
Sbjct:   308 VHGWGLDFALRKCVEPAHEKIGVVDSQWIIHQKIPSLGSQGTAQEGKTAFQGVRERCKRE 367

Query:   358 WSLFQNRLANADKAYLEEIGN 378
             W++FQ R+  +++ YL+EI +
Sbjct:   368 WTMFQKRMTRSEQKYLKEIAS 388

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:504956279 AT1G24570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 224/380 (58%), Positives = 280/380 (73%)

Query:     1 MGTSHRSGFLKK--TNDGGRLIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIA 58
             MG   RS    +  ++D  +L  T    +  G  +G SF S+  ++  LP ++  S  I+
Sbjct:     1 MGILSRSPISSRRSSDDSMKLFTTALFAIAFGIVIGLSFPSLWITETSLPRNLLRSIAIS 60

Query:    59 GKEENINQISESPFSNGSSPRIYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKK 118
              ++  I           ++P   +  +   AE LP GI+ SESD +LRRLWG P EDL K
Sbjct:    61 LRDSGI-----------ATPHKAIDISKACAERLPSGIIASESDLYLRRLWGNPDEDLVK 109

Query:   119 KPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTSQW-DEFEWSKSAIHVSIRR 177
             +P+YL T TVG NQ+ NID  V KFSE+F I+LFHYDG TS W DEFEWS++AIH+S+++
Sbjct:   110 QPRYLATFTVGYNQRHNIDACVSKFSENFTIVLFHYDGVTSAWNDEFEWSRNAIHISVKK 169

Query:   178 QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG 237
             QTKWWYAKRFLHPD+VA Y+YIFIWDEDLGV+HFN ++Y+ +VKKH L+ISQPGL+P  G
Sbjct:   170 QTKWWYAKRFLHPDIVARYDYIFIWDEDLGVDHFNAEEYIHIVKKHDLEISQPGLDPETG 229

Query:   238 LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDL 297
               WQ+TKRR   EVHK T+EK  WCS+P  PPCAAFVEIMAPVFSR+AWRCVWHMIQNDL
Sbjct:   230 FNWQITKRREHSEVHKETDEKLDWCSNPPRPPCAAFVEIMAPVFSRDAWRCVWHMIQNDL 289

Query:   298 VHGWGLDFALRRCVE-PAHEKIGVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKN 356
             VHGWGLDFALRRCVE PA EKIG+VDSQWI+HQ IPSLG+QG+A+NGKAPW+GVR RC+ 
Sbjct:   290 VHGWGLDFALRRCVEEPAFEKIGIVDSQWIVHQFIPSLGNQGKADNGKAPWQGVRDRCQM 349

Query:   357 EWSLFQNRLANADKAYLEEI 376
             EW +F+NR+  A+K Y   +
Sbjct:   350 EWKMFENRVEAAEKDYFRSL 369

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2124608 AT4G18530 "AT4G18530" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 141/328 (42%), Positives = 203/328 (61%)

Query:    19 LIITTFIGVLIGYFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENINQISESPFSNGSSP 78
             ++ITT + +   YF+  ++ +  F +  L       ++I  K  N    S     N ++ 
Sbjct:    14 VLITTAL-ICGAYFICNAYLAKDFKEKLL------KWEITDKMHN----STDKMQNATTT 62

Query:    79 RIYVSTN-PRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKK-PKY---LLTITVGLNQK 133
                 + N P G E LP GI+   S+   + LW    +D KK+ P +   LL + VG+ QK
Sbjct:    63 STCKNFNKPVGTEALPQGIIEKTSNLETQHLWNY--DDTKKRRPNHSMSLLAMAVGIKQK 120

Query:   134 KNIDRMVKKFS-EDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDV 192
             + ++++++KF   DF +MLFHYDG    W ++ W+  AIHVS+  QTKWW+AKRFLHPD+
Sbjct:   121 ELVNKVIQKFPPRDFAVMLFHYDGVVDDWKQYPWNNHAIHVSVMNQTKWWFAKRFLHPDI 180

Query:   193 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-LTWQMTKRRGDQEV 251
             VA YEYIF+WDEDLGV HFN  +Y+ +VK+ GL+ISQP L+ +   +   +T RR   +V
Sbjct:   181 VAEYEYIFLWDEDLGVGHFNPQRYLSIVKEEGLEISQPALDTSKSEVHHPITARRKKSKV 240

Query:   252 HK-VTEEK-PGWCSDPHL-PPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALR 308
             H+ + + K  G C D    PPC  +VE+MAPVFSR AWRC W+MIQNDL+H WGLD  L 
Sbjct:   241 HRRMYKYKGSGRCDDHSTNPPCIGWVEMMAPVFSRAAWRCSWYMIQNDLIHAWGLDTQLG 300

Query:   309 RCVEPAHEK-IGVVDSQWIIHQVIPSLG 335
              C +   +K +GVVD+++IIH  +P+LG
Sbjct:   301 YCAQGDRKKNVGVVDAEYIIHYGLPTLG 328

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2008425 AT1G61240 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 131/273 (47%), Positives = 174/273 (63%)

Query:    92 LPPGIVVSESDFFLRRLWGEPSEDLKKKP-----KYLLTITVGLNQKKNIDRMVKKF-SE 145
             LP GI+  +SD  L+ LW   S  L+ K      + LL + VGL QK N+D +VKKF   
Sbjct:    82 LPFGIMQPKSDLELKPLWS--SSSLRSKSGELTNRNLLAMPVGLKQKDNVDAVVKKFLPA 139

Query:   146 DFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDED 205
             +F ++LFHYDG   QW + EWS  AIH+    QTKWW+AKRFLHPD+V+ Y+Y+F+WDED
Sbjct:   140 NFTVILFHYDGNMDQWWDLEWSSKAIHIVAHNQTKWWFAKRFLHPDIVSIYDYVFLWDED 199

Query:   206 LGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-LTWQMTKRRGDQEVHKVTEEKPG--WC 262
             LGVE+FN  KY+ +VK  GL+ISQP L PN+  +  ++T R   +  H+   +  G   C
Sbjct:   200 LGVENFNPQKYLRIVKTAGLEISQPALHPNSTEVHHRITVRSRTKIFHRRVYDSRGNMKC 259

Query:   263 SDPHL-PPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVE-PAHEKIGV 320
             S+    PPC  FVE MAPVFSR AW C W++IQNDLVHGWG+D  L  C +    +K+G+
Sbjct:   260 SNASEGPPCTGFVEGMAPVFSRSAWFCTWNLIQNDLVHGWGMDMKLGYCAQGDRSKKVGI 319

Query:   321 VDSQWIIHQVIPSLGSQGQAENGKAPWEGVRAR 353
             VDS++I HQ I +LG  G  +   +   GV  R
Sbjct:   320 VDSEYIFHQGIQTLGGSGYPDKKNSARSGVNRR 352

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2202124 AT1G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 125/253 (49%), Positives = 171/253 (67%)

Query:    92 LPPGIVVSESDFFLRRLWGEPS---EDLKKKPKYLLTITVGLNQKKNIDRMVKKF-SEDF 147
             LP GI+ S SD  L+ LW   S   + ++   + LL I VGL QK N+D +VKKF   +F
Sbjct:    85 LPRGIIQSRSDLELKPLWSRGSLRSKGVEMTNRNLLAIPVGLKQKGNVDALVKKFLPANF 144

Query:   148 QIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLG 207
              I+LFHYDG   +W + EWS  +IH+  + QTKWW+AKRFLHPDVV+ Y+YIF+WDEDLG
Sbjct:   145 TIVLFHYDGNMDKWWDLEWSSKSIHIVAQNQTKWWFAKRFLHPDVVSIYDYIFLWDEDLG 204

Query:   208 VEHFNGDKYMELVKKHGLDISQPGLEPNNG-LTWQMTKRRGDQEVHKVTEEKPGW--CSD 264
             VE+FN ++Y+++VK  GL+ISQP L+ N+  +  ++T R   ++ H+      G   CS+
Sbjct:   205 VENFNPERYLKIVKSVGLEISQPALDHNSTEIHHKITLRSKTKKFHRRVYINRGHKRCSN 264

Query:   265 PHL-PPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEK-IGVVD 322
                 PPC  FVE MAPVFS+ AW C W++IQNDLVHGWG+D  L  C +    K +G+VD
Sbjct:   265 TSSDPPCTGFVEGMAPVFSKAAWLCTWNLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIVD 324

Query:   323 SQWIIHQVIPSLG 335
             S++I+HQ I +LG
Sbjct:   325 SEYILHQGIQTLG 337


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      379       379   0.00089  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  299 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.02u 0.16s 31.18t   Elapsed:  00:00:02
  Total cpu time:  31.02u 0.16s 31.18t   Elapsed:  00:00:02
  Start:  Fri May 10 07:29:37 2013   End:  Fri May 10 07:29:39 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_IX0699 hypothetical protein (382 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam05212	294	pfam05212, DUF707, Protein of unknown function (DU	0.0

>gnl|CDD|218501 pfam05212, DUF707, Protein of unknown function (DUF707)

 Score =  558 bits (1440), Expect = 0.0
 Identities = 216/294 (73%), Positives = 254/294 (86%), Gaps = 1/294 (0%)

Query: 80  IYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRM 139
           I+V TNPRGAE LPPGIVVSESDF+LRRLWG P ED+  KPKYLL  TVG +QK N+D  
Sbjct: 1   IWVPTNPRGAERLPPGIVVSESDFYLRRLWGSPEEDVASKPKYLLAFTVGYSQKANVDAC 60

Query: 140 VKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYI 199
           VKKFS++F I+LFHYDG+T++WDE EWSK AIHVS ++QTKWW+AKRFLHPD+VA YEYI
Sbjct: 61  VKKFSDNFTIVLFHYDGRTTEWDELEWSKKAIHVSAKKQTKWWFAKRFLHPDIVAPYEYI 120

Query: 200 FIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-LTWQMTKRRGDQEVHKVTEEK 258
           F+WDEDLGV++F+ ++Y+++VKKHGL+ISQPGL+P+ G +TW++TKRRGD EVHK T EK
Sbjct: 121 FLWDEDLGVDNFDAEEYIKIVKKHGLEISQPGLDPDRGQITWRITKRRGDGEVHKDTREK 180

Query: 259 PGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKI 318
              C +   PPC  FVEIMAPVFSR+AWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKI
Sbjct: 181 GRCCDNSTGPPCTGFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKI 240

Query: 319 GVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAY 372
           GVVDSQW++HQ IPSLGSQG AENGKAPW+GVR RCK EW++FQ R A A+K Y
Sbjct: 241 GVVDSQWVVHQGIPSLGSQGTAENGKAPWQGVRDRCKAEWTMFQRRWAAAEKEY 294

This family consists of several uncharacterized proteins from Arabidopsis thaliana. Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
PF05212	294	DUF707: Protein of unknown function (DUF707); Inte	100.0
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	94.55
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	94.4
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	94.32
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	93.66
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	93.41
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	91.63
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	90.51
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	88.6
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	87.78
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	85.6
COG1216	305	Predicted glycosyltransferases [General function p	83.42

>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana

Probab=100.00  E-value=3.4e-130  Score=940.78  Aligned_cols=293  Identities=65%  Similarity=1.185  Sum_probs=287.2

Q ss_pred             ccccCCCCCCCCCCCCccccCCccccccccCCCCcCcCCCCceEEEEEeccccccchhHHhhccccCcEEEEEEeCCCCC
Q 017018           80 IYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTS  159 (379)
Q Consensus        80 ~~~~~~p~g~e~lP~giv~~~sd~~l~~lwg~p~~~~~~~~kyLv~~~VG~~qk~~Vd~~v~kf~~~F~v~LfhYDG~~~  159 (379)
                      ||++++|+|+|+||+|||+++|||+||||||.|.+|...++|||||||||+|||++||++|+||++|||||||||||+++
T Consensus         1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd   80 (294)
T PF05212_consen    1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD   80 (294)
T ss_pred             CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence            68999999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             ccccccccCccEEEEEeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC-c
Q 017018          160 QWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-L  238 (379)
Q Consensus       160 ~w~d~~Ws~~aihv~~~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~-i  238 (379)
                      +|+|||||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++||||||||||+++++ +
T Consensus        81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~  160 (294)
T PF05212_consen   81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI  160 (294)
T ss_pred             chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999875 9


Q ss_pred             ceeeeeecCCcceeeeeccCCCCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeE
Q 017018          239 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKI  318 (379)
Q Consensus       239 sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~ki  318 (379)
                      ||++|+|++++++|+.+.+++++|+++|+||||||||||||||||+|||||||||||||+|||||||+|++|++.+++||
T Consensus       161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~ki  240 (294)
T PF05212_consen  161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKI  240 (294)
T ss_pred             eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccE
Confidence            99999999999999988888888999999999999999999999999999999999999999999999999998889999


Q ss_pred             EEEeeeeEEeeccCCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017018          319 GVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAY  372 (379)
Q Consensus       319 GVVDa~~VvH~g~PtLg~~g~~~~~~~~~~~vR~r~~~E~~~F~~R~~~A~k~~  372 (379)
                      ||||||||+|+|+||||+||.++.+.++|.+||+||++||++|++||++|+|+|
T Consensus       241 GVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~~  294 (294)
T PF05212_consen  241 GVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKEY  294 (294)
T ss_pred             EEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999987

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=94.55  E-value=0.72  Score=43.63  Aligned_cols=136  Identities=13%  Similarity=0.070  Sum_probs=75.4

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC--cceeeeeec-C---CcceeeeeccC--CCCCCC-
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG--LTWQMTKRR-G---DQEVHKVTEEK--PGWCSD-  264 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~--ish~iT~R~-~---~~~vHr~~~~~--~g~C~~-  264 (379)
                      +..|||++.|+|..++..-++++++.+....-.+.-|.+..-..  ..+.-.... .   ...++..-...  ...+.. 
T Consensus        82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (299)
T cd02510          82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES  161 (299)
T ss_pred             ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence            67999999999999999999999999998887777787654321  111111100 0   00111100000  000000 


Q ss_pred             CCCCCccceEEEecccccHHHHHHhhhhhcCCCcccch-hhHhhhHhhcCCCCeEEEEeeeeEEeecc
Q 017018          265 PHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWG-LDFALRRCVEPAHEKIGVVDSQWIIHQVI  331 (379)
Q Consensus       265 ~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWG-LDf~~~~c~~~~~~kiGVVDa~~VvH~g~  331 (379)
                      +..+..+.++-..+=+++|++|..+=.+ .... ..|| =|.-+..-+.-...+|-++-...|.|...
T Consensus       162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf-De~~-~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~  227 (299)
T cd02510         162 PTAPIRSPTMAGGLFAIDREWFLELGGY-DEGM-DIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR  227 (299)
T ss_pred             CCCCccCccccceeeEEEHHHHHHhCCC-CCcc-cccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence            1111122233233447999999887443 3333 3565 34443212222356888999889999765

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=94.40  E-value=0.096  Score=43.01  Aligned_cols=91  Identities=19%  Similarity=0.154  Sum_probs=61.2

Q ss_pred             CccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccce
Q 017018          195 AYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF  273 (379)
Q Consensus       195 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F  273 (379)
                      .+|||++.|+|...+...+.++.+.+.+. +..+..+.                                          
T Consensus        74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------  111 (166)
T cd04186          74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------  111 (166)
T ss_pred             CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence            79999999999999888888888754433 23332222                                          


Q ss_pred             EEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018          274 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ  329 (379)
Q Consensus       274 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~  329 (379)
                      +=..+.+|++++|+.+-.+ .... ..+|-|..+...+.....++..+....+.|.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~  165 (166)
T cd04186         112 VSGAFLLVRREVFEEVGGF-DEDF-FLYYEDVDLCLRARLAGYRVLYVPQAVIYHH  165 (166)
T ss_pred             CceeeEeeeHHHHHHcCCC-Chhh-hccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence            0012347899999876332 2222 2367787766555445689999999999996

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=94.32  E-value=0.22  Score=46.43  Aligned_cols=128  Identities=9%  Similarity=0.031  Sum_probs=72.6

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCCc-cCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCc
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPGL-EPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC  270 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc  270 (379)
                      +.+|||++.|+|..++.-.++++++.+++.  +.-+..|.. +.+.....+..... +... +...     ..+.+.+.-
T Consensus        72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-----~~~~~~~~~  144 (281)
T TIGR01556        72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD-GLLL-RQIS-----LDGLTTPQK  144 (281)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec-ccce-eeec-----ccccCCcee
Confidence            379999999999999988899999988876  567777764 22221112221111 1100 1000     000000000


Q ss_pred             cceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeec
Q 017018          271 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV  330 (379)
Q Consensus       271 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g  330 (379)
                      +.++=.-..+++|++++.+=. +..++- .++.|.-|..=+.....++.++....+.|..
T Consensus       145 ~~~~~~sg~li~~~~~~~iG~-fde~~f-i~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~  202 (281)
T TIGR01556       145 TSFLISSGCLITREVYQRLGM-MDEELF-IDHVDTEWSLRAQNYGIPLYIDPDIVLEHRI  202 (281)
T ss_pred             ccEEEcCcceeeHHHHHHhCC-ccHhhc-ccchHHHHHHHHHHCCCEEEEeCCEEEEEec
Confidence            111100123789999988733 334442 4567766633333346789999999999973

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=93.66  E-value=0.25  Score=43.93  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=62.8

Q ss_pred             CccEEEEecccccCCCCChHHHH---HHHH-HhCCcccCCCccCCCC-cceeeeeecCCcceeeeeccCCCCCCCCCCCC
Q 017018          195 AYEYIFIWDEDLGVEHFNGDKYM---ELVK-KHGLDISQPGLEPNNG-LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPP  269 (379)
Q Consensus       195 ~YDYIflwDDDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~S~-ish~iT~R~~~~~vHr~~~~~~g~C~~~~~pp  269 (379)
                      .||||++.|+|..++...+++++   +..+ ...+.+..|....... ..... .+.....+.  ...    +.   ..+
T Consensus        75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~----~~---~~~  144 (237)
T cd02526          75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPG-VRKSGYKLR--IQK----EG---EEG  144 (237)
T ss_pred             CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccc-eeccCccce--ecc----cc---cCC
Confidence            58999999999999988888885   2222 2234455554432221 11110 011110000  000    00   000


Q ss_pred             ccceEEEe--cccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018          270 CAAFVEIM--APVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ  329 (379)
Q Consensus       270 cT~FVEiM--APVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~  329 (379)
                      +...-.++  +-+|+|++++.+=.+ ..+. ...|-|+.|..-+.-...++..+....|.|.
T Consensus       145 ~~~~~~~~~~~~~~rr~~~~~~ggf-d~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~  204 (237)
T cd02526         145 LKEVDFLITSGSLISLEALEKVGGF-DEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKHE  204 (237)
T ss_pred             ceEeeeeeccceEEcHHHHHHhCCC-CHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence            11111111  126899999887444 2232 1335566655444445678988888888886

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.41  E-value=0.27  Score=42.77  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccce
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF  273 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F  273 (379)
                      +.+||+++.|+|..++.-.++++.+.++..++.+..|.......                               ++.+ 
T Consensus        78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~-  125 (202)
T cd04185          78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVG-  125 (202)
T ss_pred             cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEE-
Confidence            57999999999999998888888888775555555443322110                               1112 


Q ss_pred             EEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccCC
Q 017018          274 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS  333 (379)
Q Consensus       274 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt  333 (379)
                           -+++|++|+.+ .... +.-..||=|.-+..-+.....++ .+.+..+.|....+
T Consensus       126 -----~~~~~~~~~~~-g~~~-~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~  177 (202)
T cd04185         126 -----VLISRRVVEKI-GLPD-KEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN  177 (202)
T ss_pred             -----EEEeHHHHHHh-CCCC-hhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence                 24889999766 3322 33347887876654444456788 99999999995444

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=91.63  E-value=0.54  Score=41.64  Aligned_cols=192  Identities=16%  Similarity=0.137  Sum_probs=88.8

Q ss_pred             EEEEEeccccccchhHHhhccc----cCcEEEEEEeCCCCCcccc-c-----cccCccEEEEEe---cc--ccccccccc
Q 017018          123 LLTITVGLNQKKNIDRMVKKFS----EDFQIMLFHYDGQTSQWDE-F-----EWSKSAIHVSIR---RQ--TKWWYAKRF  187 (379)
Q Consensus       123 Lv~~~VG~~qk~~Vd~~v~kf~----~~F~v~LfhYDG~~~~w~d-~-----~Ws~~aihv~~~---kq--tKWw~akRf  187 (379)
                      .|.+++=.. ...+...++-..    .++.|+++. |+..++=.+ +     .+...-+++...   .+  +|-.-++..
T Consensus         4 ~Vvip~~~~-~~~l~~~l~sl~~~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~   81 (228)
T PF13641_consen    4 SVVIPAYNE-DDVLRRCLESLLAQDYPRLEVVVVD-DGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEA   81 (228)
T ss_dssp             EEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEE-E-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHH
T ss_pred             EEEEEecCC-HHHHHHHHHHHHcCCCCCeEEEEEE-CCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHH
Confidence            344444222 234555555432    568888766 444433211 1     233323444332   22  243333333


Q ss_pred             cCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCC
Q 017018          188 LHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHL  267 (379)
Q Consensus       188 LHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~  267 (379)
                      +.   ...+|||++.|+|..++...+.++++.+...+..+.|+....... ...++.-......+.......+.-. -..
T Consensus        82 ~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  156 (228)
T PF13641_consen   82 LA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDND-RNWLTRLQDLFFARWHLRFRSGRRA-LGV  156 (228)
T ss_dssp             HH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTC-CCEEEE-TT--S-EETTTS-TT-B-----
T ss_pred             HH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCC-CCHHHHHHHHHHhhhhhhhhhhhcc-cce
Confidence            32   145999999999999999999999999977888888866644321 1112211111000000000000000 001


Q ss_pred             CCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018          268 PPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ  329 (379)
Q Consensus       268 ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~  329 (379)
                      .+|+    .-+=+|+|++++.+-.+  +.  ..-|=|+.+..-+.....++..+....|.|.
T Consensus       157 ~~~~----G~~~~~rr~~~~~~g~f--d~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~  210 (228)
T PF13641_consen  157 AFLS----GSGMLFRRSALEEVGGF--DP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHE  210 (228)
T ss_dssp             S-B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE-
T ss_pred             eecc----CcEEEEEHHHHHHhCCC--CC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEe
Confidence            1111    12337999999888554  22  2445787776555556789999988888887

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=90.51  E-value=0.35  Score=42.64  Aligned_cols=92  Identities=13%  Similarity=0.170  Sum_probs=56.8

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccce
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF  273 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F  273 (379)
                      +.+|||++.|.|..++...+.++++.....+..+.++.                              |       +++ 
T Consensus        85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------~-------~~g-  126 (196)
T cd02520          85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------C-------AFG-  126 (196)
T ss_pred             CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------------------c-------ccC-
Confidence            57999999999998887777777765432222222211                              0       011 


Q ss_pred             EEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018          274 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ  329 (379)
Q Consensus       274 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~  329 (379)
                         .+-+|+|++|+.+=.+  .....-++=|+.+..-+.....++..++.. ++|+
T Consensus       127 ---~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~-~~~~  176 (196)
T cd02520         127 ---KSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWRLGYRVVLSPYV-VMQP  176 (196)
T ss_pred             ---ceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHHcCCeEEEcchh-eecc
Confidence               2347899999877433  111123466888776666567889888775 5554

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=88.60  E-value=0.95  Score=40.03  Aligned_cols=125  Identities=13%  Similarity=0.009  Sum_probs=66.4

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCC-CcceeeeeecCCcceeeeeccCCCCCCCC---CCCC
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNN-GLTWQMTKRRGDQEVHKVTEEKPGWCSDP---HLPP  269 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S-~ish~iT~R~~~~~vHr~~~~~~g~C~~~---~~pp  269 (379)
                      +.+|||.+.|+|..++...++++++..++.+..+.+....... ........+........   .....+...   ...+
T Consensus        80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  156 (249)
T cd02525          80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGS---GGSAYRGGAVKIGYVD  156 (249)
T ss_pred             hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhcc---CCcccccccccccccc
Confidence            4799999999999999888999998888877776655432211 00000000000000000   000000000   0000


Q ss_pred             ccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018          270 CAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ  329 (379)
Q Consensus       270 cT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~  329 (379)
                      +.++     =+|+|++|+.+=.+ ....  ..|-|+.+..-+.....++..+....+.|.
T Consensus       157 ~~~~-----~~~~~~~~~~~g~~-~~~~--~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~  208 (249)
T cd02525         157 TVHH-----GAYRREVFEKVGGF-DESL--VRNEDAELNYRLRKAGYKIWLSPDIRVYYY  208 (249)
T ss_pred             cccc-----ceEEHHHHHHhCCC-Cccc--CccchhHHHHHHHHcCcEEEEcCCeEEEEc
Confidence            1111     16899999876332 2232  346676554333334678999998888887

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=87.78  E-value=0.32  Score=42.12  Aligned_cols=116  Identities=15%  Similarity=0.096  Sum_probs=62.3

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCC--CcceeeeeecCCcceeee-eccCCCCCCCCCCCC
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNN--GLTWQMTKRRGDQEVHKV-TEEKPGWCSDPHLPP  269 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S--~ish~iT~R~~~~~vHr~-~~~~~g~C~~~~~pp  269 (379)
                      +.+|||++.|+|..++.-.++++++.++++ +..+..+....-.  ...+.... .+..  ... .......|       
T Consensus        79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~-------  148 (201)
T cd04195          79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS--HDDILKFARRRS-------  148 (201)
T ss_pred             cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCC--HHHHHHHhccCC-------
Confidence            679999999999999888888888887654 5666555432211  11111000 0000  000 00000111       


Q ss_pred             ccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeE
Q 017018          270 CAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWI  326 (379)
Q Consensus       270 cT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~V  326 (379)
                         .+..++=+|+|+++..+-.+-  ..  -++-|+.+...+.....++..+....+
T Consensus       149 ---~~~~~~~~~rr~~~~~~g~~~--~~--~~~eD~~~~~r~~~~g~~~~~~~~~~~  198 (201)
T cd04195         149 ---PFNHPTVMFRKSKVLAVGGYQ--DL--PLVEDYALWARMLANGARFANLPEILV  198 (201)
T ss_pred             ---CCCChHHhhhHHHHHHcCCcC--CC--CCchHHHHHHHHHHcCCceecccHHHh
Confidence               111122378999998876552  22  457787766554334567777655443

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=85.60  E-value=0.84  Score=38.54  Aligned_cols=36  Identities=11%  Similarity=-0.072  Sum_probs=26.8

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHH-HHhCCcccC
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQ  229 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQ  229 (379)
                      +..|||++.|+|..++.-.+.+.++.. +..+..+..
T Consensus        74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~  110 (202)
T cd06433          74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVY  110 (202)
T ss_pred             cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEE
Confidence            468999999999999998888888444 333454443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=83.42  E-value=6.1  Score=38.05  Aligned_cols=136  Identities=16%  Similarity=0.074  Sum_probs=83.9

Q ss_pred             ccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCC-----CCCCCc
Q 017018          196 YEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSD-----PHLPPC  270 (379)
Q Consensus       196 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~-----~~~ppc  270 (379)
                      |+|++++++|..++...++++++.+++.+-...-+++-.+..-+-.+..+........ .......+.+     ...+.|
T Consensus        85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  163 (305)
T COG1216          85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLT-GGWRASPLLEIAPDLSSYLEV  163 (305)
T ss_pred             CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheecccccccc-ccceecccccccccccchhhh
Confidence            5599999999999999999999999999888777776665322222222211000000 0000111111     122334


Q ss_pred             cceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccCCC
Q 017018          271 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSL  334 (379)
Q Consensus       271 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~PtL  334 (379)
                      ..++..-+-+++|++++.+=.+ ..+.- .+.-|.-|..=+.-...++..+=.-.|.|..--+.
T Consensus       164 ~~~~~G~~~li~~~~~~~vG~~-de~~F-~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~  225 (305)
T COG1216         164 VASLSGACLLIRREAFEKVGGF-DERFF-IYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK  225 (305)
T ss_pred             hhhcceeeeEEcHHHHHHhCCC-Ccccc-eeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence            4466777789999999988653 23333 56667666444444456899999999999855444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	94.09
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	90.92
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	89.44
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	89.36
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	89.26
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	86.15
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	84.16

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=94.09  E-value=0.15  Score=44.24  Aligned_cols=125  Identities=10%  Similarity=-0.074  Sum_probs=67.4

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccc
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAA  272 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~  272 (379)
                      +..|||++.|+|..++...++++++.++++ +..+..+....-       .....+..+..........-.     ....
T Consensus        87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~  154 (255)
T 1qg8_A           87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTY-------HLNENRDIVKETVRPAAQVTW-----NAPC  154 (255)
T ss_dssp             CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEE-------EEC---CEEEEEEECCCSCBS-----CCTT
T ss_pred             cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEE-------EeCCCCcchhhccCchHHHHH-----hhcC
Confidence            578999999999999988899999999876 666655543210       000001111110000000000     0011


Q ss_pred             eEEEecccccHHHHHHhh-hh---hcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeecc
Q 017018          273 FVEIMAPVFSREAWRCVW-HM---IQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVI  331 (379)
Q Consensus       273 FVEiMAPVFSR~Awrcvw-~m---iqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~  331 (379)
                      ++-..+-+|+|++++.+- .+   +..+.....+-|+.+...+... .++..++...+.|+..
T Consensus       155 ~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~-g~~~~~~~~~~~~r~~  216 (255)
T 1qg8_A          155 AIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHF-YPFYPLDEELDLNYIT  216 (255)
T ss_dssp             TSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTT-CCBEEEEEEEEEEEEC
T ss_pred             CCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHh-CCEEEecCcEEEEEEc
Confidence            222234479999998774 33   1112222345576554444323 3699999998888743

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=90.92  E-value=1.1  Score=43.81  Aligned_cols=193  Identities=13%  Similarity=0.053  Sum_probs=100.0

Q ss_pred             CCceEEEEEeccccccchhHHhhcc-------ccCcEEEEEEeCCCCCccccccccCccEEEEE--------eccccccc
Q 017018          119 KPKYLLTITVGLNQKKNIDRMVKKF-------SEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSI--------RRQTKWWY  183 (379)
Q Consensus       119 ~~kyLv~~~VG~~qk~~Vd~~v~kf-------~~~F~v~LfhYDG~~~~w~d~~Ws~~aihv~~--------~kqtKWw~  183 (379)
                      .++..|.+++ ++...++..+++..       +.+|.|++ .=||++|+=.++-=.-.+..+..        .+++|-.-
T Consensus        93 ~p~vSVVIP~-yNe~~~l~~~l~sl~~~l~~~~~~~EIIV-VDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A  170 (387)
T 3f1y_A           93 GLTVSAVLPS-RNVADTVGGIIDEIHALNERAPLIDQILV-VDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDA  170 (387)
T ss_dssp             TCCEEEEEEE-SSCTTTHHHHHHHHHHHHHHSCCCSEEEE-EECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHH
T ss_pred             CCeEEEEEEc-CCCHHHHHHHHHHHHHHHhcCCCCeEEEE-EcCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHH
Confidence            4678888888 45556666665544       35788775 56888876433211111111111        13333222


Q ss_pred             cccccCcccccCccEEEEeccccc-CCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeee----ecc
Q 017018          184 AKRFLHPDVVAAYEYIFIWDEDLG-VEHFNGDKYMELVKKH-GLDISQPGLEPNNGLTWQMTKRRGDQEVHKV----TEE  257 (379)
Q Consensus       184 akRfLHPdiva~YDYIflwDDDL~-vd~f~i~ry~~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~----~~~  257 (379)
                      .+.=+   -.+.+|||++.|.|.. ++...+.++++.+.+. +..+................ +.....+.+.    ...
T Consensus       171 ~n~G~---~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~~~~~~~~-~~~~g~v~~~~~~~l~~  246 (387)
T 3f1y_A          171 MWRAL---SVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFRKGESIE-EDGGGRVTELTAKPLFN  246 (387)
T ss_dssp             HHHHT---TTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC-------C-CBCCSHHHHHTHHHHHH
T ss_pred             HHHHH---HhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeeccccccccccc-cccCCchhhhhHHHHHH
Confidence            22211   1257999999999999 8999999999988765 56655543321100000000 0001100000    000


Q ss_pred             --CCCCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhh-HhhcC-CCCeEEEEeeeeEEeec
Q 017018          258 --KPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALR-RCVEP-AHEKIGVVDSQWIIHQV  330 (379)
Q Consensus       258 --~~g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~-~c~~~-~~~kiGVVDa~~VvH~g  330 (379)
                        .+..+ .. .-|.++|.     +|+|++++.+ .+     ..|||.|..+. +++.. .-++|.=|+-.+..|..
T Consensus       247 ~~~~~l~-~~-~d~~sG~~-----a~rR~~l~~i-~f-----~~gyg~e~ell~~~~~~~G~~~I~eVpi~~~~h~~  310 (387)
T 3f1y_A          247 LFYPELA-GF-VQPLAGEF-----VADRELFCSI-PF-----LTGYAVETGIMIDVLKKVGLGAMAQVDLGERQNRH  310 (387)
T ss_dssp             HHCGGGT-TC-SCTTCSCE-----EEEHHHHTTS-CE-----ECSTTHHHHHHHHHHHHHCGGGEEEEEEEECCCCC
T ss_pred             HHhHhhc-cc-cccccccE-----EEEHHHHHhC-CC-----CCCcchHHHHHHHHHHhcCCCeEEEEecceeecCC
Confidence              00000 00 11223332     6999999876 33     25899986553 33322 22358888888888863

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=89.44  E-value=1.6  Score=42.97  Aligned_cols=207  Identities=12%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             CCceEEEEEeccccccc----hhHHhhccccC--cEEEEEEeCCCCCcc-c-cccccCccEEEEEe--cccccccccccc
Q 017018          119 KPKYLLTITVGLNQKKN----IDRMVKKFSED--FQIMLFHYDGQTSQW-D-EFEWSKSAIHVSIR--RQTKWWYAKRFL  188 (379)
Q Consensus       119 ~~kyLv~~~VG~~qk~~----Vd~~v~kf~~~--F~v~LfhYDG~~~~w-~-d~~Ws~~aihv~~~--kqtKWw~akRfL  188 (379)
                      .|+.-|.+++=-.....    ++.+++.-..+  +.|++ .=||+.|+= . .++-..+ ++|...  +.++   +....
T Consensus        65 ~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIv-VDDgS~D~t~~~~~~~~~~-v~vi~~~~n~G~---~~A~N  139 (501)
T 2ffu_A           65 LPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIIL-VDDYSNDPEDGALLGKIEK-VRVLRNDRREGL---MRSRV  139 (501)
T ss_dssp             CCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEE-EECSCSCTHHHHGGGGBTT-EEEEECSSCCHH---HHHHH
T ss_pred             CCCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEE-EECCCCchHHHHHHhcCCC-EEEEECCCCcCH---HHHHH
Confidence            45666777763322213    34444332334  47765 557877642 1 1111122 333321  1221   11111


Q ss_pred             CcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCC--Ccceeee----eecCCcceeeeeccCC---
Q 017018          189 HPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNN--GLTWQMT----KRRGDQEVHKVTEEKP---  259 (379)
Q Consensus       189 HPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S--~ish~iT----~R~~~~~vHr~~~~~~---  259 (379)
                      .---.+..|||++.|+|..++.-.++++++.+++..-.+..|.++.-.  .+.+.-.    ...-...++......+   
T Consensus       140 ~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (501)
T 2ffu_A          140 RGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQ  219 (501)
T ss_dssp             HHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHH
T ss_pred             HHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHH
Confidence            111235789999999999999999999999999887777777653211  1111000    0000000000000000   


Q ss_pred             --CCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccc-hhhHhhhHhhcCCCCeEEEEeeeeEEeeccC
Q 017018          260 --GWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGW-GLDFALRRCVEPAHEKIGVVDSQWIIHQVIP  332 (379)
Q Consensus       260 --g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGW-GLDf~~~~c~~~~~~kiGVVDa~~VvH~g~P  332 (379)
                        .+-.++..+-.+.++-..+=+|+|+++..+=.+ ...+ ..| |=|+-+..-+.....++.++....|.|..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgf-de~~-~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r~  293 (501)
T 2ffu_A          220 RRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKY-DMMM-DVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRK  293 (501)
T ss_dssp             HHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCC-CTTC-CSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCCS
T ss_pred             HhhccCCCCCcccCccccceEEEEEHHHHHHhCCC-Cccc-cccCcchHHHHHHHHhcCCeEEEccCcEEEEEccC
Confidence              000011111011111122338999999887543 2333 466 4454443222224579999999999997444

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=89.36  E-value=1.9  Score=43.60  Aligned_cols=211  Identities=12%  Similarity=0.088  Sum_probs=100.8

Q ss_pred             CCceEEEEEeccccccc----hhHHhhccccC--cEEEEEEeCCCCCcc-cc-c-ccc--CccEEEEEeccccccccccc
Q 017018          119 KPKYLLTITVGLNQKKN----IDRMVKKFSED--FQIMLFHYDGQTSQW-DE-F-EWS--KSAIHVSIRRQTKWWYAKRF  187 (379)
Q Consensus       119 ~~kyLv~~~VG~~qk~~----Vd~~v~kf~~~--F~v~LfhYDG~~~~w-~d-~-~Ws--~~aihv~~~kqtKWw~akRf  187 (379)
                      .|+.-|++++=-.....    |+.+++.-..+  |.|+| .=||+.|+- .+ + ++.  ..-|+|...... .=++...
T Consensus       111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIV-VDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n-~G~~~A~  188 (570)
T 2d7i_A          111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVL-VDDFSDREHLKKPLEDYMALFPSVRILRTKKR-EGLIRTR  188 (570)
T ss_dssp             CCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEE-EECSCCCGGGTHHHHHHHTTSTTEEEEECSSC-CCHHHHH
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEE-EECCCCcHHHHHHHHHHHHhCCeEEEEECCCC-CCHHHHH
Confidence            45677777774332133    33333332334  46665 567877654 21 1 110  112444332211 1111111


Q ss_pred             cCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCC--Ccceeee----eecC-Cccee-eeeccCC
Q 017018          188 LHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNN--GLTWQMT----KRRG-DQEVH-KVTEEKP  259 (379)
Q Consensus       188 LHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S--~ish~iT----~R~~-~~~vH-r~~~~~~  259 (379)
                      ..---.+..|||++.|+|..++.-.++++++.+++..-.+..|.++.-.  .+.+...    .+.. ...+. ++.....
T Consensus       189 N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (570)
T 2d7i_A          189 MLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPP  268 (570)
T ss_dssp             HHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCT
T ss_pred             HHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccch
Confidence            1111135789999999999999999999999998765445545432111  1111110    0000 00000 0000000


Q ss_pred             C-CCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccc-hhhHhhhHhhcCCCCeEEEEeeeeEEeeccCC
Q 017018          260 G-WCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGW-GLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS  333 (379)
Q Consensus       260 g-~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGW-GLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt  333 (379)
                      . .-.++..+--+.++-..+-+|+|++|+.+=.+ ..++ ..| |=|+-+..-+.....+|.++....|.|..+..
T Consensus       269 ~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgf-De~~-~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r~~  342 (570)
T 2d7i_A          269 ELQKADPSDPFESPVMAGGLFAVDRKWFWELGGY-DPGL-EIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKY  342 (570)
T ss_dssp             TTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSS-CTTC-CSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCCSS
T ss_pred             hhhccCCCcceecccccceEEEEEHHHHHhcCCC-CCcc-cccCcchHHHHHHHHhCCCeEEEccCeEEEEEcccc
Confidence            0 00000111111122222347999999888443 3333 466 44554433333346799999999999975544

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=89.26  E-value=0.75  Score=44.57  Aligned_cols=138  Identities=11%  Similarity=0.062  Sum_probs=70.7

Q ss_pred             cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCC--CCccee----eeeecCCcceeeeeccCCC-----CC
Q 017018          194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN--NGLTWQ----MTKRRGDQEVHKVTEEKPG-----WC  262 (379)
Q Consensus       194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~--S~ish~----iT~R~~~~~vHr~~~~~~g-----~C  262 (379)
                      +..|||++.|+|..++.-.++++++.+++..-.+..|.++.-  ..+.+.    .+...-...++.....-+.     +-
T Consensus       113 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (472)
T 1xhb_A          113 SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRK  192 (472)
T ss_dssp             CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTT
T ss_pred             ccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhccc
Confidence            679999999999999999999999999887665555654211  111110    0000000000000000000     00


Q ss_pred             CCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccch-hhHhhhHhhcCCCCeEEEEeeeeEEeeccCC
Q 017018          263 SDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWG-LDFALRRCVEPAHEKIGVVDSQWIIHQVIPS  333 (379)
Q Consensus       263 ~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWG-LDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt  333 (379)
                      .+...+-.+.++-..+=+|+|++|+.+=.+ ..++ ..|| =|+-+..-+.....++.++....|.|....+
T Consensus       193 ~~~~~~~~~~~~~g~~~~irr~~~~~iGgf-de~~-~~~g~ED~dl~~R~~~~G~~i~~~p~~~v~H~~~~~  262 (472)
T 1xhb_A          193 GDRTLPVRTPTMAGGLFSIDRDYFQEIGTY-DAGM-DIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKA  262 (472)
T ss_dssp             TCTTSCEECSBCCSSSEEEEHHHHHHTTSC-CTTS-CTTCCCCSHHHHHHHHTTCEEEEEEEEEEEEEC---
T ss_pred             CCCCCcccCccccceeEEEEHHHHHHcCCC-CCcc-cccCchhHHHHHHHHhcCCeEEEccCcEEEEEccCc
Confidence            000001111111122336899999887543 2333 3664 2433322222245799999999999986544

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=86.15  E-value=1.2  Score=44.62  Aligned_cols=210  Identities=17%  Similarity=0.201  Sum_probs=100.7

Q ss_pred             CCceEEEEEeccccccchhHHhhcc-----ccCcEEEEEEeCCCCCccccc--cccC-ccEEEEEeccccccccccccCc
Q 017018          119 KPKYLLTITVGLNQKKNIDRMVKKF-----SEDFQIMLFHYDGQTSQWDEF--EWSK-SAIHVSIRRQTKWWYAKRFLHP  190 (379)
Q Consensus       119 ~~kyLv~~~VG~~qk~~Vd~~v~kf-----~~~F~v~LfhYDG~~~~w~d~--~Ws~-~aihv~~~kqtKWw~akRfLHP  190 (379)
                      .++.-|.+++ ++....+...++..     +.++.|+++. ||+.++-.++  ++.+ .-+++....+...-.+....+-
T Consensus        92 ~p~vsviIp~-~n~~~~l~~~l~sl~~q~~~~~~eiivvD-d~s~d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g  169 (625)
T 2z86_A           92 IDGLSIVIPT-YNRAKILAITLACLCNQKTIYDYEVIVAD-DGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLG  169 (625)
T ss_dssp             CCCEEEEEEE-SSCHHHHHHHHHHHHTCCCSSCEEEEEEE-ESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHH
T ss_pred             CCcEEEEEec-CCcHHHHHHHHHHHHhhccCCCeEEEEEe-CCCchhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHH
Confidence            4566677766 33344555555543     2378887654 7777653221  1111 1233333332221111111011


Q ss_pred             ccccCccEEEEecccccCCCCChHHHHHHHHHhC-CcccCCCccCCC-Cccee------eeeec-CC----cceeeeecc
Q 017018          191 DVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHG-LDISQPGLEPNN-GLTWQ------MTKRR-GD----QEVHKVTEE  257 (379)
Q Consensus       191 diva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~g-LeISQPALd~~S-~ish~------iT~R~-~~----~~vHr~~~~  257 (379)
                      =-.+.+|||++.|+|..++.-.+.++++.+++.. .-+.+|...... ...+.      -..+. +.    ..+......
T Consensus       170 ~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (625)
T 2z86_A          170 LRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQ  249 (625)
T ss_dssp             HHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC-------------
T ss_pred             HHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchhhhhcc
Confidence            1125799999999999999999999999988743 334444321111 00000      00000 00    000000000


Q ss_pred             --CCCC------CCC---CCCCCccceEEEecccccHHHHHHhhhhhcCCCcccch-hhHhhhHhhcCCCCeEEEEeeee
Q 017018          258 --KPGW------CSD---PHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWG-LDFALRRCVEPAHEKIGVVDSQW  325 (379)
Q Consensus       258 --~~g~------C~~---~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWG-LDf~~~~c~~~~~~kiGVVDa~~  325 (379)
                        ...|      +.+   ....++ .++=..+-+|+|++|+.+=.+ ..++ ..|| =|+-+..-+.....++..++...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~rr~~l~~iGgf-de~~-~~~g~ED~dl~~Rl~~~G~~i~~~p~~~  326 (625)
T 2z86_A          250 NKSVDWRIEHFKNTDNLRLCNTPF-RFFSGGNVAFAKKWLFRAGWF-DEEF-THWGGEDNEFGYRLYREGCYFRSVEGAM  326 (625)
T ss_dssp             --CCCTHHHHHHHTTTTTTCSCGG-GGCCTTEEEEETHHHHHHCCC-CTTC-SSCCCHHHHHHHHHHHTTCEEEECGGGC
T ss_pred             CCccccchhhhcccccccccCCce-eEEeeceeeeEHHHHHHhCCC-cccc-ccCCcchhhhhhhHHhCCceEEEcccch
Confidence              0000      000   001111 223333458999999887433 3344 3664 55554433333457999999999


Q ss_pred             EEeeccCC
Q 017018          326 IIHQVIPS  333 (379)
Q Consensus       326 VvH~g~Pt  333 (379)
                      +.|...+.
T Consensus       327 v~H~~~~~  334 (625)
T 2z86_A          327 AYHQEPPG  334 (625)
T ss_dssp             EEEECCC-
T ss_pred             hhccCCcc
Confidence            99985443

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=84.16  E-value=11  Score=37.66  Aligned_cols=189  Identities=15%  Similarity=0.112  Sum_probs=89.9

Q ss_pred             CCceEEEEEeccccccchhHHhhcc----ccCcEEEEEEeCCCCCcccc-c-cc---cCccEEEEEeccccccccccccC
Q 017018          119 KPKYLLTITVGLNQKKNIDRMVKKF----SEDFQIMLFHYDGQTSQWDE-F-EW---SKSAIHVSIRRQTKWWYAKRFLH  189 (379)
Q Consensus       119 ~~kyLv~~~VG~~qk~~Vd~~v~kf----~~~F~v~LfhYDG~~~~w~d-~-~W---s~~aihv~~~kqtKWw~akRfLH  189 (379)
                      .++.-|.+++ ++....+.+.++-.    -.+|.|+++ =||++|+=.+ + ++   ..+...+...++++-.-.+.-+ 
T Consensus       374 ~~~vsiii~~-yn~~~~l~~~l~s~~~q~~~~~eiivv-dd~S~d~t~~~~~~~~~~~~~i~~~~~~n~G~~~a~n~g~-  450 (625)
T 2z86_A          374 VPLVSIYIPA-YNCSKYIVRCVESALNQTITDLEVCIC-DDGSTDDTLRILQEHYANHPRVRFISQKNKGIGSASNTAV-  450 (625)
T ss_dssp             SCSEEEEEEE-SSCTTTHHHHHHHHHSSSCCSEEEEEE-EESCSSSHHHHHHHHHTTCTTEEEEEECCCCHHHHHHHHH-
T ss_pred             CCeEEEEEeC-CCCHHHHHHHHHHHHhCcCCCeEEEEE-ECcCChhHHHHHHHHHhhCCcEEEEeCCCCCHHHHHHHHH-
Confidence            4555566665 45556666655544    257888764 4676664211 1 11   1123333333333221111111 


Q ss_pred             cccccCccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCC
Q 017018          190 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLP  268 (379)
Q Consensus       190 Pdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~p  268 (379)
                        -.+..|||++.|+|..++...++++++.+++. +..+..+...         .....+..+.. ....+..-.+. . 
T Consensus       451 --~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~-~-  516 (625)
T 2z86_A          451 --RLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNR---------NIDREGNLISN-GYNWPIYSREK-L-  516 (625)
T ss_dssp             --HHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEEEEE---------EECTTSCEEEE-CCCCSSCCHHH-H-
T ss_pred             --HhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEeeeE---------EECCCCCEecc-CcccccCCHHH-H-
Confidence              12578999999999999888888888777543 3333332211         00001111111 00000000000 0 


Q ss_pred             CccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018          269 PCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ  329 (379)
Q Consensus       269 pcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~  329 (379)
                       ..+++-..+-+|+|++|..+-.+ ..++.  .+-|+.+..-+.... ++..++...+.|+
T Consensus       517 -~~~~~~~~~~~~~r~~~~~~ggf-d~~~~--~~eD~dl~~r~~~~g-~~~~~~~~~~~~r  572 (625)
T 2z86_A          517 -TSAMICHHFRMFTARAWNLTEGF-NESIS--NAVDYDMYLKLSEVG-PFKHINKICYNRV  572 (625)
T ss_dssp             -TTSCCCCSCEEEEHHHHTTTTCC-CSSCS--SCHHHHHHHHHTTTS-CEEEEEEEEEEEE
T ss_pred             -hhcccCCceEEEEHHHHHHhCCC-CCccC--ChHHHHHHHHHHHhC-CEEEeCCcEEEEE
Confidence             00111111237899998776443 23333  446765543333233 8999988766655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	90.45

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.45  E-value=0.49  Score=40.97  Aligned_cols=137  Identities=12%  Similarity=0.080  Sum_probs=74.9

Q ss_pred             ccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeee--------cCCcceeeeecc---CCCC
Q 017018          193 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKR--------RGDQEVHKVTEE---KPGW  261 (379)
Q Consensus       193 va~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R--------~~~~~vHr~~~~---~~g~  261 (379)
                      .+.-|||++.|+|..++.-.++++++.+++..-.+..|.++.-..-++.....        ......+.....   ....
T Consensus       105 ~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (328)
T d1xhba2         105 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRR  184 (328)
T ss_dssp             HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHT
T ss_pred             hhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCccccccccccccccccccchhhhhcc
Confidence            36789999999999999999999999999988877777653221111111100        001111111100   0001


Q ss_pred             CCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccch---hhHhhhHhhcCCCCeEEEEeeeeEEeeccCC
Q 017018          262 CSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWG---LDFALRRCVEPAHEKIGVVDSQWIIHQVIPS  333 (379)
Q Consensus       262 C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWG---LDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt  333 (379)
                      ..+...+..+.++...+=.++|++|..+=.+ ..+. ..||   +|+.+...  ....+|..+-...|.|..+-.
T Consensus       185 ~~~~~~~~~~~~~~g~~~~irr~~f~~vGgf-De~~-~~~g~ED~Dl~~R~~--~~G~~i~~~p~~~v~H~~~~~  255 (328)
T d1xhba2         185 KGDRTLPVRTPTMAGGLFSIDRDYFQEIGTY-DAGM-DIWGGENLEISFRIW--QCGGTLEIVTCSHVGHVFRKA  255 (328)
T ss_dssp             TTCTTSCEECSBCCSSSEEEEHHHHHHTTSC-CTTS-CTTCCCCSHHHHHHH--HTTCEEEEEEEEEEEEEC---
T ss_pred             ccccccccccceecceeeeeeHHHHHHhCCC-CCCC-cCcCchHHHHHHHHH--HhCCeEEEeCCeEEEEeCCCC
Confidence            1111222222333333335799999987333 2333 3565   34544433  345799999999999975444