Citrus Sinensis ID: 017028

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGNF
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHccccccccccccccEEEEEEccccccccccccccccccccEEEEEEcEEEEEEcccHHHHHHHHHHHHHHHccccccccHccEEEEEccccccHccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccc
Coil and Loop (DISEMBL)
MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLqslksplfdrcfffnlrhfsaiphrlcteldsgsvdfhpnygladedeeigkipvkaYFLSTSIDLKsmqaenlthvvppssrstKYIALRYsdfpseisalgvhgnvsHCRYMVVFHYGSavlfniedhevENYLHIIRRHAsgmlpemrkddyaikekpllaedmqggpdyivlknldtdsVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAmektgtftmDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGNF
Flexible Loop (DISEMBL)
MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSIDLKSMqaenlthvvppssrstKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPllaedmqggPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVglferseiawrDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGNF
Low Complexity Region (SEG)
MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGNF
Disordered region (IsUnstruct)
***WRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVV*****STKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEM**DDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRL***
Disordered Region (DISOPRED)
**RWRLPSLLLTHM****************************************************************************FLSTSIDLKSMQ************************************NVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGN*
Disordered Region (DISEMBL)
MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGNF
Disordered Region (DISPRO)
*GRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHR*C***DSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLACRLGNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q03441	430	Sporulation protein RMD1	yes	no	0.548	0.483	0.225	9e-10
O74446	382	Sad1-interacting factor 2	yes	no	0.691	0.685	0.209	1e-07
Q05648	414	Uncharacterized protein Y	no	no	0.604	0.553	0.214	6e-05

>sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 108/231 (46%), Gaps = 23/231 (9%)

Query: 146 MVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKE---------KPLLA 196
           + +F YG  V++   + E + +L+ I +     L E   +D  ++E         +P + 
Sbjct: 205 LFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAE---EDIQVEEFNYYVTKSYQPRIY 261

Query: 197 ED---MQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKT 253
            D   ++ G +Y+V  +        I   + QS+ +  F   VD  +E+   I + +  +
Sbjct: 262 NDFITLRDGSNYMVKLS--------ISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYS 313

Query: 254 GTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRF 313
           G  +M +  +++ +G+      ++ L   + +  EI W + +   IY+  R   E+ QR 
Sbjct: 314 GKVSMSKEDIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRV 373

Query: 314 GNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
             L+ +L+ +   +  L+E + +   + LE+ +I L+ +E +ISV  IV D
Sbjct: 374 SLLNQRLEVISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVD 424

Required for sporulation where it is believed to have a role in meiotic nuclear division.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 10/272 (3%)

Query: 100 SMQAENLTHVVPPSSRSTKYIALRYSDFPSEISAL---GVHGNVSHCRYMVVFHYGSAVL 156
           S   E  T ++P +  S++    R S   S  S     G+  N    R +  F YG  VL
Sbjct: 109 SYNNEETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYGVVVL 168

Query: 157 FNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGP---DYIVLKNLDT 213
           +     E   +L  + R     + +++ +D  ++E       +       D+I L++   
Sbjct: 169 WGYTIDEEHRFLRELGRFE---IEKLKIEDMEVEEFNYYITTLYQPRIFNDFIALRDASN 225

Query: 214 DSVRV-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANS 272
             +R+ I   + QS+ +  F   V+  ++      + + +TG   + R +++  VG+   
Sbjct: 226 YMIRLSISHAIAQSVKISLFEELVNETIDATKDTPQMIAETGRVNLKREEIMMAVGQLFI 285

Query: 273 NLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 332
              ++ L+  + +  E+ W + +   IY   R   E+ QR   L+ +++ +   +  L+E
Sbjct: 286 LRININLQGSVLDSPELMWTEPQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKE 345

Query: 333 VIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
            I +   + LEW ++ L+ +  +I+++ IV D
Sbjct: 346 QITHTHDESLEWIVVILMGLLVLIALFSIVVD 377

Required for sporulation where it is believed to have a role in meiotic nuclear division.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q05648|YD282_YEAST Uncharacterized protein YDR282C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR282C PE=3 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 32/261 (12%)

Query: 127 FPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDD 186
            P EI +     N +    M++   GS V +   +  V N +  I + AS  L  +  +D
Sbjct: 136 IPDEIVSFSYQDNGNKGDVMILGQNGSIVSWGFSESSVRNCIVPIVKAAS--LNPLNGED 193

Query: 187 YAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIG--SVLGQSMALDYFVSQVDCLVEEFA 244
           +  ++   +  +++G  D+  L +LD      I   S L   + +   +     ++++ A
Sbjct: 194 FETEDMDYV--EIEGEQDFDKLSSLDNKVTPRIACESFLSGDLIIINSLDSDQGMLDKAA 251

Query: 245 ---GINR---------AMEKTGTFTMDRTKLIQLVGKANSNLADVILKVG---------- 282
              G++R         AMEK  + T   T+ I    K N   +D +  +G          
Sbjct: 252 FSSGLSRSTNLAVLEEAMEKHISKTRTITENISKGTKLNLRSSDALKSIGRLFLIRGKLN 311

Query: 283 ----LFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 338
               L E  ++ W + +  +I++ +    ++  R   L+ KL +       L  ++  R 
Sbjct: 312 LYSELIETPDLYWSEPQLEEIFKNVSRYLDIGPRINILNSKLDYSTDECRALISLLNERN 371

Query: 339 SDLLEWCIIFLLTIENVISVY 359
           S  LEW II+L+  E    +Y
Sbjct: 372 STFLEWIIIYLIAFELCFEIY 392

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
224098942	366	predicted protein [Populus trichocarpa]	0.947	0.980	0.745	1e-148
224112166	366	predicted protein [Populus trichocarpa]	0.944	0.978	0.732	1e-146
21536713	373	unknown [Arabidopsis thaliana]	0.970	0.986	0.672	1e-140
18409257	373	uncharacterized protein [Arabidopsis tha	0.970	0.986	0.669	1e-140
297841671	373	hypothetical protein ARALYDRAFT_476065 [	0.970	0.986	0.669	1e-139
225424979	374	PREDICTED: uncharacterized protein LOC10	0.976	0.989	0.663	1e-134
357487355	412	Sporulation protein RMD1 [Medicago trunc	0.841	0.774	0.711	1e-131
388519621	356	unknown [Medicago truncatula]	0.841	0.896	0.711	1e-130
255542132	339	conserved hypothetical protein [Ricinus	0.846	0.946	0.723	1e-128
356499855	348	PREDICTED: uncharacterized protein LOC10	0.907	0.988	0.656	1e-127

>gi|224098942|ref|XP_002311326.1| predicted protein [Populus trichocarpa] gi|222851146|gb|EEE88693.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/369 (74%), Positives = 305/369 (82%), Gaps = 10/369 (2%)

Query: 1   MG-RWR-LPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRL 58
           MG RWR   SLLL H+  T +  +F L  +L    +   PL      F  R FSAIP R+
Sbjct: 1   MGSRWRATASLLLDHI--TTKASDF-LSPNLPKPLNRSHPLIHTVRGFKFRPFSAIPSRV 57

Query: 59  CT---ELDSGSVDFHPNYGLA-DEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSS 114
                E++SGS D   NY L   EDEE GKIPVKAYFL TSI+LKSMQAENL++VVPP+S
Sbjct: 58  SVYSNEIESGSHDLALNYPLGPKEDEETGKIPVKAYFLCTSINLKSMQAENLSNVVPPTS 117

Query: 115 RSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRH 174
           RST Y  LR+ +F S+ISALG+ G VS CRYMVVF YGSAVLFNIEDHEVE YL I+RRH
Sbjct: 118 RSTNYTVLRFFNFSSDISALGIGGYVS-CRYMVVFQYGSAVLFNIEDHEVERYLEIVRRH 176

Query: 175 ASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVS 234
            SG+L EMRKDDYAI EKPLLAEDMQGG DYIVLK LDTDS+R+IGSVLGQS+ALDYFVS
Sbjct: 177 TSGLLSEMRKDDYAIIEKPLLAEDMQGGLDYIVLKTLDTDSIRIIGSVLGQSIALDYFVS 236

Query: 235 QVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDA 294
           QVD +VEEF+GINRAMEKTGTFTMDR KL+QLVGKANSNLADVILKVGLFERSEIAWRDA
Sbjct: 237 QVDGMVEEFSGINRAMEKTGTFTMDRKKLLQLVGKANSNLADVILKVGLFERSEIAWRDA 296

Query: 295 KYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIEN 354
           KYAQIYEYLREEYEV QRFG+LD+KLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLL+IEN
Sbjct: 297 KYAQIYEYLREEYEVTQRFGSLDYKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLSIEN 356

Query: 355 VISVYEIVR 363
           +IS+YEIV+
Sbjct: 357 IISIYEIVQ 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112166|ref|XP_002316104.1| predicted protein [Populus trichocarpa] gi|222865144|gb|EEF02275.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/370 (73%), Positives = 303/370 (81%), Gaps = 12/370 (3%)

Query: 1   MG-RWR-LPSLLLTHMA-RTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHR 57
           MG RWR   SLLL H+  +  +  + NL   + H      PL      F  R FSAIP R
Sbjct: 1   MGSRWRATASLLLNHITTKAFKFLSPNLPRPIYH----SHPLTQTVCGFKFRSFSAIPSR 56

Query: 58  LCT---ELDSGSVDFHPNYGLA-DEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPS 113
           +     E++SGS D   NY L   EDEE GKIPVKAYFL TSI+LKSMQAENL++VVPP+
Sbjct: 57  VSVYSNEIESGSHDLAINYDLGPKEDEESGKIPVKAYFLCTSINLKSMQAENLSYVVPPT 116

Query: 114 SRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRR 173
           SRST Y+ L++ DF S+ISALG+   +S CRYMVVF YGSAVLFNIED +VE YL ++RR
Sbjct: 117 SRSTNYVVLKFFDFSSDISALGIREYIS-CRYMVVFQYGSAVLFNIEDPDVERYLEMVRR 175

Query: 174 HASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFV 233
           H SG+L EMRKDDYAIKEKPLL EDMQGG DYIVLK LDTDS+R+IGSVLGQS+ALDYFV
Sbjct: 176 HTSGLLSEMRKDDYAIKEKPLLDEDMQGGLDYIVLKTLDTDSIRIIGSVLGQSIALDYFV 235

Query: 234 SQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRD 293
           SQVD +VEEFAGINRAMEKTGTF+MDR KL+QLVGKANSNLADVILKVGLFERSEIAWRD
Sbjct: 236 SQVDGMVEEFAGINRAMEKTGTFSMDRKKLLQLVGKANSNLADVILKVGLFERSEIAWRD 295

Query: 294 AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIE 353
           AKYAQIYEYLREEYEV QRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLL+IE
Sbjct: 296 AKYAQIYEYLREEYEVTQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLSIE 355

Query: 354 NVISVYEIVR 363
           N+IS+YEIV+
Sbjct: 356 NIISIYEIVQ 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536713|gb|AAM61045.1| unknown [Arabidopsis thaliana]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/375 (67%), Positives = 301/375 (80%), Gaps = 7/375 (1%)

Query: 1   MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLC- 59
           MG+WR  + LL      + +   NL S     +     L  R  F N RHFSA P  +  
Sbjct: 1   MGKWRAVAALLLRNQLLNSSKRLNLSSSPCVSKHPTIGLASR--FLNFRHFSAFPSPISI 58

Query: 60  --TELDSGSVDFHPNYGLADEDEE-IGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRS 116
              + DSGS D + NY    E EE +GKIP+KAYFLSTSIDLK+MQAENL +VVPP+SRS
Sbjct: 59  YNNDSDSGSNDAYQNYEFGTEAEEALGKIPIKAYFLSTSIDLKAMQAENLCNVVPPTSRS 118

Query: 117 TKYIALRYSDF-PSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHA 175
           T YIAL++SDF PS I +L    +VS+C++MVVF YGSA+LFN++D++V+ YL I+RRHA
Sbjct: 119 TNYIALKFSDFTPSGIYSLDERESVSNCKFMVVFQYGSAILFNVDDNDVDRYLDIVRRHA 178

Query: 176 SGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQ 235
           SG+L EMRKDDYA+KEKPLL E+M+GGPDYIVLK LDT+S+R+IGSVLGQS+ALDY VSQ
Sbjct: 179 SGLLTEMRKDDYAVKEKPLLIEEMKGGPDYIVLKTLDTNSIRIIGSVLGQSIALDYSVSQ 238

Query: 236 VDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAK 295
           V+ LVEEFA INR+M KTGTFTM R KL QLVGKANSN+ADVILKVGLFERSEIAWR+A+
Sbjct: 239 VNKLVEEFAVINRSMAKTGTFTMTRKKLFQLVGKANSNIADVILKVGLFERSEIAWREAR 298

Query: 296 YAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENV 355
           YAQIYEYLREEYE++QRFG+LD+KLKF+EHNIHFLQEV+QNR+SDLLEWCIIFLL IEN 
Sbjct: 299 YAQIYEYLREEYEISQRFGDLDYKLKFIEHNIHFLQEVMQNRQSDLLEWCIIFLLAIENA 358

Query: 356 ISVYEIVRDSTGVSL 370
           IS+YEIVR+S G SL
Sbjct: 359 ISIYEIVRESAGASL 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409257|ref|NP_564963.1| uncharacterized protein [Arabidopsis thaliana] gi|12325085|gb|AAG52494.1|AC018364_12 hypothetical protein; 13477-15179 [Arabidopsis thaliana] gi|12597794|gb|AAG60106.1|AC073178_17 hypothetical protein [Arabidopsis thaliana] gi|332196796|gb|AEE34917.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/375 (66%), Positives = 300/375 (80%), Gaps = 7/375 (1%)

Query: 1   MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLC- 59
           MG+WR  + LL      + +   NL S     +     L  R  F N RHFSA P  +  
Sbjct: 1   MGKWRAVAALLLRNQLLNSSKRLNLSSSPCVSKHPTIGLASR--FLNFRHFSAFPSPISI 58

Query: 60  --TELDSGSVDFHPNYGLADEDEE-IGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRS 116
              + DSGS D + NY    E EE +GKIP+KAYFLSTSIDLK+MQAENL +VVPP+SRS
Sbjct: 59  YNNDSDSGSNDAYQNYEFGTEAEEALGKIPIKAYFLSTSIDLKAMQAENLCNVVPPTSRS 118

Query: 117 TKYIALRYSDF-PSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHA 175
           T YIAL++SDF PS I +L    +VS+C++MVVF YGSA+LFN++D++V+ YL I+RRHA
Sbjct: 119 TNYIALKFSDFTPSGIYSLDERESVSNCKFMVVFQYGSAILFNVDDNDVDRYLDIVRRHA 178

Query: 176 SGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQ 235
           SG+L EMRKDDYA+KEKPLL E+M+GGPDYIVLK LDT+S+R+IGSVLGQS+ALDY VSQ
Sbjct: 179 SGLLTEMRKDDYAVKEKPLLIEEMKGGPDYIVLKTLDTNSIRIIGSVLGQSIALDYSVSQ 238

Query: 236 VDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAK 295
           V+ LVEEFA INR+M KTGTFTM R KL QLVGKANSN+ADVILKVGLFERSEIAWR+A+
Sbjct: 239 VNKLVEEFADINRSMAKTGTFTMTRKKLFQLVGKANSNIADVILKVGLFERSEIAWREAR 298

Query: 296 YAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENV 355
           YAQIYEYLREEYE++QRFG+LD+KLKF+EHNIHFLQEV+QNR+SDLLEWCIIFLL IEN 
Sbjct: 299 YAQIYEYLREEYEISQRFGDLDYKLKFIEHNIHFLQEVMQNRQSDLLEWCIIFLLAIENA 358

Query: 356 ISVYEIVRDSTGVSL 370
           I +YEIVR+S G SL
Sbjct: 359 IGIYEIVRESAGASL 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841671|ref|XP_002888717.1| hypothetical protein ARALYDRAFT_476065 [Arabidopsis lyrata subsp. lyrata] gi|297334558|gb|EFH64976.1| hypothetical protein ARALYDRAFT_476065 [Arabidopsis lyrata subsp. lyrata]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/375 (66%), Positives = 296/375 (78%), Gaps = 7/375 (1%)

Query: 1   MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLC- 59
           MG+WR  + LL      + +   NL S           L  R  F + RHFSA P  +  
Sbjct: 1   MGKWRAVAALLLRNQLLNSSKRLNLSSPYVSKHHPAIGLASR--FLDFRHFSAFPSPISI 58

Query: 60  --TELDSGSVDFHPNYGLAD-EDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRS 116
              + DSGS D + NY     E+EE+GKIP+KAYFLST IDLK+MQAENL +VVPP+SRS
Sbjct: 59  YNNDSDSGSTDAYQNYEFGTHEEEELGKIPIKAYFLSTGIDLKAMQAENLCNVVPPTSRS 118

Query: 117 TKYIALRYSDF-PSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHA 175
           T  IAL++SDF PS I  +    +VS+CR+MVVF YGSA+LFN++D++V+ YL I+RRHA
Sbjct: 119 TNSIALKFSDFTPSGIHTMDERESVSNCRFMVVFQYGSAILFNVDDNDVDRYLDIVRRHA 178

Query: 176 SGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQ 235
           SG+L EMRKDDYA+KEKPLL E+M+GG DYIVLK LDT+S+R+IGSVLGQS+ALDYFVSQ
Sbjct: 179 SGLLTEMRKDDYAVKEKPLLTEEMKGGHDYIVLKTLDTNSIRIIGSVLGQSIALDYFVSQ 238

Query: 236 VDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAK 295
           V+ LVEEFA INRAM KTGTFTM R KL QLVGKANSNL DVILKVGLFERSEIAWR+A+
Sbjct: 239 VNKLVEEFADINRAMAKTGTFTMTRKKLFQLVGKANSNLGDVILKVGLFERSEIAWREAR 298

Query: 296 YAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENV 355
           YAQIYEYLREEYEV QRFG+LD+KLKF+EHNIHFLQEV+QNRRSDLLEWCIIFLLTIEN 
Sbjct: 299 YAQIYEYLREEYEVTQRFGDLDYKLKFIEHNIHFLQEVLQNRRSDLLEWCIIFLLTIENA 358

Query: 356 ISVYEIVRDSTGVSL 370
           I +YEI+R+S G SL
Sbjct: 359 IGIYEILRESAGASL 373

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424979|ref|XP_002266340.1| PREDICTED: uncharacterized protein LOC100265119 [Vitis vinifera] gi|297738194|emb|CBI27395.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/374 (66%), Positives = 286/374 (76%), Gaps = 4/374 (1%)

Query: 1   MGRWRLPSLLLTHMARTHENCNFNL---FSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHR 57
           MGRWR   LL T +  T +         F+ L +L    +P+     FF      +    
Sbjct: 1   MGRWRCSILLGTLLTSTSKYPTPYFCRPFTPLRYLPFPSNPISRFFRFFPFSALPSPASV 60

Query: 58  LCTELDSGSVDFHPNYGLAD-EDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRS 116
              +  SGS DF  +Y     ED+   KIPVKA+FL TSIDL+SMQAE+ +++VPPSSRS
Sbjct: 61  YANDFVSGSHDFPHDYIFQPREDDGSEKIPVKAFFLCTSIDLRSMQAEHWSNIVPPSSRS 120

Query: 117 TKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHAS 176
             YI LRY DFPSEI+ +G   NV  C YMVVF YGSAVLFNI D+EVE YL I+RR+AS
Sbjct: 121 ANYIVLRYYDFPSEITGIGGEDNVGCCHYMVVFQYGSAVLFNIVDNEVEAYLKIVRRYAS 180

Query: 177 GMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQV 236
           G+LPEMRKDDYA+K+ P+LAEDMQGG DYIVLKNLD D +R+IG VLGQS+ALDYFVSQ+
Sbjct: 181 GLLPEMRKDDYAVKQNPVLAEDMQGGTDYIVLKNLDIDGIRIIGRVLGQSIALDYFVSQI 240

Query: 237 DCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKY 296
           D +VEEF  INR MEKTGTFTMDR KL QLVGKANSNLADVILKVGLFERSEIAWRDAKY
Sbjct: 241 DGMVEEFTDINRGMEKTGTFTMDRRKLFQLVGKANSNLADVILKVGLFERSEIAWRDAKY 300

Query: 297 AQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
           AQI+EYL EEYEV QRFGNLDFKLKFVEHNIHFLQEV+QNRRS+LLEWCII+L+ IENVI
Sbjct: 301 AQIFEYLWEEYEVTQRFGNLDFKLKFVEHNIHFLQEVLQNRRSNLLEWCIIYLIFIENVI 360

Query: 357 SVYEIVRDSTGVSL 370
           S+YEI+ + T VSL
Sbjct: 361 SIYEIIHEPTAVSL 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487355|ref|XP_003613965.1| Sporulation protein RMD1 [Medicago truncatula] gi|355515300|gb|AES96923.1| Sporulation protein RMD1 [Medicago truncatula]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/333 (71%), Positives = 274/333 (82%), Gaps = 14/333 (4%)

Query: 39  LFDRCFFFN-LRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSID 97
           LF   F FN     +AIP      LD   +   P      ED+   KIP+KA+FLSTSI+
Sbjct: 92  LFTPHFLFNRFLTVAAIP------LDPDPIHIEP------EDDPHVKIPIKAFFLSTSIN 139

Query: 98  LKSMQAENLTHVVPPSSRS-TKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVL 156
           LK +QA+N  +VVPPSSRS + Y+ALR+ ++ S+ +  G H   S+CRYMVV+ YGSAVL
Sbjct: 140 LKGIQADNPRNVVPPSSRSASNYVALRFCNYNSDANGPGFHVKASNCRYMVVYQYGSAVL 199

Query: 157 FNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSV 216
           FNIEDHEV+ YL +++RHASG+L EMRKDDYAI+EKP L EDM GGPDYIVLK+LDTD +
Sbjct: 200 FNIEDHEVDIYLQLVKRHASGLLSEMRKDDYAIREKPQLVEDMLGGPDYIVLKSLDTDGI 259

Query: 217 RVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLAD 276
           R+IGSVLGQS+ALDYFVSQVD LVEEFAGINR MEKTGTFTMD+ KL+QLVGKANSNLAD
Sbjct: 260 RLIGSVLGQSIALDYFVSQVDGLVEEFAGINRGMEKTGTFTMDKKKLLQLVGKANSNLAD 319

Query: 277 VILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 336
           VILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLD+KLKFVEHNIHFLQEV+QN
Sbjct: 320 VILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDYKLKFVEHNIHFLQEVLQN 379

Query: 337 RRSDLLEWCIIFLLTIENVISVYEIVRDSTGVS 369
           R+SD LEWCII LLTIENVIS+YEI++DS  +S
Sbjct: 380 RKSDFLEWCIIGLLTIENVISLYEILKDSNAIS 412

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519621|gb|AFK47872.1| unknown [Medicago truncatula]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/333 (71%), Positives = 274/333 (82%), Gaps = 14/333 (4%)

Query: 39  LFDRCFFFN-LRHFSAIPHRLCTELDSGSVDFHPNYGLADEDEEIGKIPVKAYFLSTSID 97
           LF   F FN     +AIP      LD   +   P      ED+   KIP+KA+FLSTSI+
Sbjct: 36  LFTPHFLFNRFLTVAAIP------LDPDPIHIEP------EDDPHVKIPIKAFFLSTSIN 83

Query: 98  LKSMQAENLTHVVPPSSRS-TKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVL 156
           LK +QA+N  +VVPPSSRS + Y+ALR+ ++ S+ +  G H   S+CRYMVV+ YGSAVL
Sbjct: 84  LKGIQADNPRNVVPPSSRSASNYVALRFCNYNSDANGPGFHVKASNCRYMVVYQYGSAVL 143

Query: 157 FNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSV 216
           FNIEDHEV+ YL +++RHASG+L EMRKDDYAI+EKP L EDM GGPDYIVLK+LDTD +
Sbjct: 144 FNIEDHEVDIYLQLVKRHASGLLSEMRKDDYAIREKPQLVEDMLGGPDYIVLKSLDTDGI 203

Query: 217 RVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLAD 276
           R+IGSVLGQS+ALDYFVSQVD LVEEFAGINR MEKTGTFTMD+ KL+QLVGKANSNLAD
Sbjct: 204 RLIGSVLGQSIALDYFVSQVDGLVEEFAGINRGMEKTGTFTMDKKKLLQLVGKANSNLAD 263

Query: 277 VILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 336
           VILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLD+KLKFVEHNIHFLQEV+QN
Sbjct: 264 VILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDYKLKFVEHNIHFLQEVLQN 323

Query: 337 RRSDLLEWCIIFLLTIENVISVYEIVRDSTGVS 369
           R+SD LEWCII LLTIENVIS+YEI++DS  +S
Sbjct: 324 RKSDFLEWCIIGLLTIENVISLYEILKDSNAIS 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542132|ref|XP_002512130.1| conserved hypothetical protein [Ricinus communis] gi|223549310|gb|EEF50799.1| conserved hypothetical protein [Ricinus communis]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/329 (72%), Positives = 261/329 (79%), Gaps = 8/329 (2%)

Query: 1   MGRW-RLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLC 59
           MGRW    SLL  H+AR   +      SH    Q    P     + F  R FSA+P R+ 
Sbjct: 1   MGRWGAAASLLFNHIARKPSSSTLPNISHRSVRQFY--PSNQGVYLFGFRSFSALPSRVS 58

Query: 60  T---ELDSGSVDFHPNYGL-ADEDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSR 115
               E++ GS DF   Y     EDEEIGKIPVKAYFL TSIDLKSMQ+ENL +VVPP+SR
Sbjct: 59  VYSNEIEYGSHDFASIYDFEPKEDEEIGKIPVKAYFLCTSIDLKSMQSENLINVVPPTSR 118

Query: 116 STKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHA 175
           ST YI LRY  FPSEI+AL V   +  C+YMVVF YGSAVLFNIEDHEVE++L I+RRHA
Sbjct: 119 STNYIVLRYCGFPSEITALRVKDYI-KCQYMVVFQYGSAVLFNIEDHEVESFLEIVRRHA 177

Query: 176 SGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQ 235
           SG+LPEMRKDDYAIKEKPLL EDMQGG DYIVLK LDTDS+R++GSVLGQS+ALDYFVSQ
Sbjct: 178 SGLLPEMRKDDYAIKEKPLLVEDMQGGADYIVLKTLDTDSIRIMGSVLGQSIALDYFVSQ 237

Query: 236 VDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAK 295
           VD +VEEFAGINRAMEKTGTFTMDR KL+QLVGKANSNLADVILKVGLFERSEIAWRDAK
Sbjct: 238 VDGMVEEFAGINRAMEKTGTFTMDRKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAK 297

Query: 296 YAQIYEYLREEYEVAQRFGNLDFKLKFVE 324
           YAQIYEYLREEYEV QRFGNLDFKLKFVE
Sbjct: 298 YAQIYEYLREEYEVTQRFGNLDFKLKFVE 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499855|ref|XP_003518751.1| PREDICTED: uncharacterized protein LOC100792982 [Glycine max]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/370 (65%), Positives = 279/370 (75%), Gaps = 26/370 (7%)

Query: 2   GRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTE 61
           GRWR  S     +  +        +S   H      P F+R         S IP      
Sbjct: 3   GRWRTLSSFYNRITTSFS------YSSKPHF-----PSFNRSISLAAAATSEIPD----- 46

Query: 62  LDSGSVDFHPNYGLAD-EDEEIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRST-KY 119
                      +G  D E +   KIPVKAYFLSTSI+LK +QA+N  +VVPPSSRS+  Y
Sbjct: 47  --------PDQFGFVDPELDPCVKIPVKAYFLSTSINLKGIQADNHRNVVPPSSRSSSNY 98

Query: 120 IALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGML 179
           +ALR+ DF  + +  G H   S+CRYMVV+ YGSAVLFNIEDHEVE+YL +++RHASG+L
Sbjct: 99  VALRFCDFNLDSNGHGFHMKASNCRYMVVYQYGSAVLFNIEDHEVESYLELVKRHASGLL 158

Query: 180 PEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCL 239
            +MRKDDYAIKEKPL  EDMQGGPDYIVLK+LDTD +R+IGSVLGQS+ALDYFVSQVD L
Sbjct: 159 QDMRKDDYAIKEKPLQVEDMQGGPDYIVLKSLDTDGIRIIGSVLGQSIALDYFVSQVDGL 218

Query: 240 VEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQI 299
           VEEFAGINR MEKTGTFTMD+ KL+QLVGKANSNLADVILKVGLFERSEIAWRDAKYAQI
Sbjct: 219 VEEFAGINRGMEKTGTFTMDKKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQI 278

Query: 300 YEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVY 359
           YEYLR+EYEVAQRFGNLDFKLKFVEHNIHFLQEV+QNR+SD LEWCII LLTIENV+S+Y
Sbjct: 279 YEYLRDEYEVAQRFGNLDFKLKFVEHNIHFLQEVLQNRKSDFLEWCIIGLLTIENVLSLY 338

Query: 360 EIVRDSTGVS 369
           EI+  +  VS
Sbjct: 339 EILGATNTVS 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2007161	373	RRG "AT1G69380" [Arabidopsis t	0.970	0.986	0.669	1.2e-127
TAIR|locus:2173214	402	AT5G13610 "AT5G13610" [Arabido	0.939	0.885	0.501	6e-87
UNIPROTKB|Q604L4	262	MCA2525 "Putative uncharacteri	0.559	0.809	0.264	1.2e-16
SGD|S000002159	430	RMD1 "Cytoplasmic protein requ	0.569	0.502	0.233	6.1e-11
CGD|CAL0002345	475	orf19.3158 [Candida albicans (	0.564	0.450	0.235	3.6e-10
UNIPROTKB|Q59L21	475	RMD1 "Putative uncharacterized	0.564	0.450	0.235	3.6e-10
UNIPROTKB|Q74A33	271	GSU2558 "Uncharacterized prote	0.577	0.808	0.227	9.3e-10
TIGR_CMR|GSU_2558	271	GSU_2558 "conserved domain pro	0.577	0.808	0.227	9.3e-10
POMBASE|SPCC16C4.01	382	sif2 "Sad1 interacting factor	0.691	0.685	0.209	3.9e-09
ASPGD|ASPL0000002811	515	AN10806 [Emericella nidulans (	0.580	0.427	0.220	7.1e-09

TAIR|locus:2007161 RRG "AT1G69380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
 Identities = 251/375 (66%), Positives = 300/375 (80%)

Query:     1 MGRWRLPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLC- 59
             MG+WR  + LL      + +   NL S     +     L  R  F N RHFSA P  +  
Sbjct:     1 MGKWRAVAALLLRNQLLNSSKRLNLSSSPCVSKHPTIGLASR--FLNFRHFSAFPSPISI 58

Query:    60 --TELDSGSVDFHPNYGLADEDEE-IGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRS 116
                + DSGS D + NY    E EE +GKIP+KAYFLSTSIDLK+MQAENL +VVPP+SRS
Sbjct:    59 YNNDSDSGSNDAYQNYEFGTEAEEALGKIPIKAYFLSTSIDLKAMQAENLCNVVPPTSRS 118

Query:   117 TKYIALRYSDF-PSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHA 175
             T YIAL++SDF PS I +L    +VS+C++MVVF YGSA+LFN++D++V+ YL I+RRHA
Sbjct:   119 TNYIALKFSDFTPSGIYSLDERESVSNCKFMVVFQYGSAILFNVDDNDVDRYLDIVRRHA 178

Query:   176 SGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQ 235
             SG+L EMRKDDYA+KEKPLL E+M+GGPDYIVLK LDT+S+R+IGSVLGQS+ALDY VSQ
Sbjct:   179 SGLLTEMRKDDYAVKEKPLLIEEMKGGPDYIVLKTLDTNSIRIIGSVLGQSIALDYSVSQ 238

Query:   236 VDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAK 295
             V+ LVEEFA INR+M KTGTFTM R KL QLVGKANSN+ADVILKVGLFERSEIAWR+A+
Sbjct:   239 VNKLVEEFADINRSMAKTGTFTMTRKKLFQLVGKANSNIADVILKVGLFERSEIAWREAR 298

Query:   296 YAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENV 355
             YAQIYEYLREEYE++QRFG+LD+KLKF+EHNIHFLQEV+QNR+SDLLEWCIIFLL IEN 
Sbjct:   299 YAQIYEYLREEYEISQRFGDLDYKLKFIEHNIHFLQEVMQNRQSDLLEWCIIFLLAIENA 358

Query:   356 ISVYEIVRDSTGVSL 370
             I +YEIVR+S G SL
Sbjct:   359 IGIYEIVRESAGASL 373

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0010082 "regulation of root meristem growth" evidence=IMP

GO:0032875 "regulation of DNA endoreduplication" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2173214 AT5G13610 "AT5G13610" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 187/373 (50%), Positives = 248/373 (66%)

Query:     6 LPSLLLTHMARTHENCNFNLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRLCTELDSG 65
             LPSL      R+  N     FS++  +    SP++D   F NL    AI     T + S 
Sbjct:    33 LPSLPFHFSLRSSSNIPTRCFSNV--VAKSNSPIYDFQGFRNLFTERAISSSTTTPVASA 90

Query:    66 SVDF--HPNYGLADEDEEIG---------KIPVKAYFLSTSIDLKSMQAENLTHVVPPSS 114
                   + N   A+ DEEI           IPV+AYF STS+DL+S+  +N  + +PP+S
Sbjct:    91 QPQQLQNQNQHPAEVDEEISMGLEDEAKLSIPVRAYFFSTSVDLRSLIEQNKQNFIPPTS 150

Query:   115 RSTKYIALRYSDF--PSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIR 172
             R T Y+ L++ +   P++ +   + G+ S   YMVVFHYGS VLFN+ +HEV+ YL ++ 
Sbjct:   151 RMTNYVVLKFGNHSDPTDTTRGRISGSESI--YMVVFHYGSIVLFNVREHEVDEYLKVVE 208

Query:   173 RHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYF 232
             RHASG+LPEMRKD+Y ++E P L   M+ G D+I L+ L+TD +R IG VLGQS+ALDY+
Sbjct:   209 RHASGLLPEMRKDEYEVRENPNLDTWMEVGRDFIRLQFLNTDGIRTIGCVLGQSIALDYY 268

Query:   233 VSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWR 292
               QVD +V EF  INR +E TGTFTM R KL QLVGKAN  LADVILK+GLFERS+IAW+
Sbjct:   269 GRQVDGMVAEFTEINRQLEITGTFTMKRKKLFQLVGKANVILADVILKLGLFERSDIAWK 328

Query:   293 DAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTI 352
             DAKY QI+E+LR+E+E+ Q F NLD+KLKFVEHN+ FLQE++QNR+S  LEW II L+++
Sbjct:   329 DAKYGQIWEFLRDEFELTQSFANLDYKLKFVEHNVRFLQEILQNRKSATLEWLIIILISM 388

Query:   353 ENVISVYEIVRDS 365
             E  IS Y + R S
Sbjct:   389 EIAISFYNMSRAS 401

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q604L4 MCA2525 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 210 (79.0 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 58/219 (26%), Positives = 104/219 (47%)

Query:   145 YMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPD 204
             Y + F +G  VL  +   +    L  +R      L E   ++  +   P L E +     
Sbjct:    45 YRITFRFGVVVLVGLSAEQEAEVLQGLRPVVHNPLAEPELEEVDLLIHPELPERLDSA-G 103

Query:   205 YIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEK-TGTFTMDRTK- 262
              +VL+      ++V+  VL +S  L Y+   V    EEF  I +  ++ T      R K 
Sbjct:   104 RLVLREASVARLQVVAHVLAKSCVLSYYERNV---AEEFDRIEQIAQRLTRAAGPPRGKR 160

Query:   263 -LIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLK 321
              ++  +GKA S +  ++ +V + E+ EI W D +  Q+YE L  EYE+  R   L  KL+
Sbjct:   161 EILNEIGKALSIMGRMVGRVEVAEKPEIVWDDPQLDQLYERLATEYELRDRDRALSRKLE 220

Query:   322 FVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYE 360
              +        +++ +R++  +EW I+ L+ +E V+S+Y+
Sbjct:   221 LISRTAETYLDLVNHRQALRVEWYIVLLIVVEIVLSLYD 259

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000002159 RMD1 "Cytoplasmic protein required for sporulation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 179 (68.1 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 52/223 (23%), Positives = 108/223 (48%)

Query:   146 MVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKE-KPLLAEDMQGG-- 202
             + +F YG  V++   + E + +L+ I +     L E   +D  ++E    + +  Q    
Sbjct:   205 LFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAE---EDIQVEEFNYYVTKSYQPRIY 261

Query:   203 PDYIVLKNLDTDSVRV-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRT 261
              D+I L++     V++ I   + QS+ +  F   VD  +E+   I + +  +G  +M + 
Sbjct:   262 NDFITLRDGSNYMVKLSISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYSGKVSMSKE 321

Query:   262 KLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLK 321
              +++ +G+      ++ L   + +  EI W + +   IY+  R   E+ QR   L+ +L+
Sbjct:   322 DIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVSLLNQRLE 381

Query:   322 FVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
              +   +  L+E + +   + LE+ +I L+ +E +ISV  IV D
Sbjct:   382 VISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVD 424

GO:0007126 "meiosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0002345 orf19.3158 [Candida albicans (taxid:5476)]

 Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 52/221 (23%), Positives = 106/221 (47%)

Query:   148 VFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKE-KPLLAEDMQGG--PD 204
             +F YG  +++     E   +L  + R  S  L E   +D  I+E    + +  Q     D
Sbjct:   254 IFEYGVVIMWGYTTKEEAAFLEDLARFESEKLSE---EDIQIEEFNYYITKSYQPRIYND 310

Query:   205 YIVLKNLDTDSVRV-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKL 263
             +I L++ D   +++ I   L QS+ +  F   VD  +E+   I + +  TG   M R ++
Sbjct:   311 FITLRDDDNYMLKLSISHGLAQSVKISLFEELVDNTIEDTQEIPQQIAHTGKVEMTRDEI 370

Query:   264 IQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFV 323
             ++ +G+      ++ L   + +  E+ W +     IY+ +R   E+ QR   L+ +L+ +
Sbjct:   371 MKSIGELFILRININLHGSVLDSPELMWAEPHLEPIYQAMRGYLEINQRVELLNQRLEVI 430

Query:   324 EHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
                +  L+E + +   + LE+ ++ L+ +E ++SV  I+ D
Sbjct:   431 SDLLSMLKEQLGHSHEENLEFIVVVLVGVEVLVSVINIIID 471

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59L21 RMD1 "Putative uncharacterized protein RMD1" [Candida albicans SC5314 (taxid:237561)]

 Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 52/221 (23%), Positives = 106/221 (47%)

Query:   148 VFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKE-KPLLAEDMQGG--PD 204
             +F YG  +++     E   +L  + R  S  L E   +D  I+E    + +  Q     D
Sbjct:   254 IFEYGVVIMWGYTTKEEAAFLEDLARFESEKLSE---EDIQIEEFNYYITKSYQPRIYND 310

Query:   205 YIVLKNLDTDSVRV-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKL 263
             +I L++ D   +++ I   L QS+ +  F   VD  +E+   I + +  TG   M R ++
Sbjct:   311 FITLRDDDNYMLKLSISHGLAQSVKISLFEELVDNTIEDTQEIPQQIAHTGKVEMTRDEI 370

Query:   264 IQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFV 323
             ++ +G+      ++ L   + +  E+ W +     IY+ +R   E+ QR   L+ +L+ +
Sbjct:   371 MKSIGELFILRININLHGSVLDSPELMWAEPHLEPIYQAMRGYLEINQRVELLNQRLEVI 430

Query:   324 EHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
                +  L+E + +   + LE+ ++ L+ +E ++SV  I+ D
Sbjct:   431 SDLLSMLKEQLGHSHEENLEFIVVVLVGVEVLVSVINIIID 471

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74A33 GSU2558 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 163 (62.4 bits), Expect = 9.3e-10, P = 9.3e-10
 Identities = 53/233 (22%), Positives = 104/233 (44%)

Query:   138 GNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGM--LPEMR-KDDYAI----K 190
             G+    + + ++ +G  V  N  + E   +   +  +A     +P+ + +DDYA+     
Sbjct:    46 GDQGTTKRVYLYFFGGVVFVNCTEEEARAFFWSMAHYAEPFKSVPDEKYRDDYALALGES 105

Query:   191 EKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAM 250
               P +  D+   P Y      D   V  I  V+ +S+AL+    +VD +++E   +   +
Sbjct:   106 SGPAVTNDLATMPVY------DPAYVDTICFVIAKSVALERIEERVDQVLDEMETVIGML 159

Query:   251 EKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVA 310
             ++      DR +L +L     +     I  V + E+ E  W + +  ++Y  +   +E+ 
Sbjct:   160 DRGKLGISDR-RLAKLAANVLTYKYQSIAHVMVLEKPEFTWENPEADRLYLTMANVFELN 218

Query:   311 QRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVR 363
             QR+  +  K + +         +   RR+  LEW II L+ IE VI ++E+ R
Sbjct:   219 QRYNEIKHKGETLLDITEVFTSLAHARRASRLEWTIIILIFIEIVIYLFELAR 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2558 GSU_2558 "conserved domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 163 (62.4 bits), Expect = 9.3e-10, P = 9.3e-10
 Identities = 53/233 (22%), Positives = 104/233 (44%)

Query:   138 GNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGM--LPEMR-KDDYAI----K 190
             G+    + + ++ +G  V  N  + E   +   +  +A     +P+ + +DDYA+     
Sbjct:    46 GDQGTTKRVYLYFFGGVVFVNCTEEEARAFFWSMAHYAEPFKSVPDEKYRDDYALALGES 105

Query:   191 EKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAM 250
               P +  D+   P Y      D   V  I  V+ +S+AL+    +VD +++E   +   +
Sbjct:   106 SGPAVTNDLATMPVY------DPAYVDTICFVIAKSVALERIEERVDQVLDEMETVIGML 159

Query:   251 EKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVA 310
             ++      DR +L +L     +     I  V + E+ E  W + +  ++Y  +   +E+ 
Sbjct:   160 DRGKLGISDR-RLAKLAANVLTYKYQSIAHVMVLEKPEFTWENPEADRLYLTMANVFELN 218

Query:   311 QRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVR 363
             QR+  +  K + +         +   RR+  LEW II L+ IE VI ++E+ R
Sbjct:   219 QRYNEIKHKGETLLDITEVFTSLAHARRASRLEWTIIILIFIEIVIYLFELAR 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPCC16C4.01 sif2 "Sad1 interacting factor 2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 162 (62.1 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 57/272 (20%), Positives = 117/272 (43%)

Query:   100 SMQAENLTHVVPP---SSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVL 156
             S   E  T ++P    SSR T           S     G+  N    R +  F YG  VL
Sbjct:   109 SYNNEETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYGVVVL 168

Query:   157 FNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGP---DYIVLKNLDT 213
             +     E   +L  + R     + +++ +D  ++E       +       D+I L++   
Sbjct:   169 WGYTIDEEHRFLRELGRFE---IEKLKIEDMEVEEFNYYITTLYQPRIFNDFIALRDASN 225

Query:   214 DSVRV-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANS 272
               +R+ I   + QS+ +  F   V+  ++      + + +TG   + R +++  VG+   
Sbjct:   226 YMIRLSISHAIAQSVKISLFEELVNETIDATKDTPQMIAETGRVNLKREEIMMAVGQLFI 285

Query:   273 NLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 332
                ++ L+  + +  E+ W + +   IY   R   E+ QR   L+ +++ +   +  L+E
Sbjct:   286 LRININLQGSVLDSPELMWTEPQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKE 345

Query:   333 VIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
              I +   + LEW ++ L+ +  +I+++ IV D
Sbjct:   346 QITHTHDESLEWIVVILMGLLVLIALFSIVVD 377

GO:0003674 "molecular_function" evidence=ND

GO:0005816 "spindle pole body" evidence=NAS

GO:0007126 "meiosis" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

ASPGD|ASPL0000002811 AN10806 [Emericella nidulans (taxid:162425)]

 Score = 162 (62.1 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 50/227 (22%), Positives = 103/227 (45%)

Query:   142 HCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGML-PEMRKDDYAIKEKPLLAEDMQ 200
             H   + +F YG+ V++ +   +   +L  I + A+ +L PE   D          A + Q
Sbjct:   286 HAPEVFLFDYGTVVIWGMTPAQESRFLSDISKFATSILSPE---DTQVENFNFYYAREYQ 342

Query:   201 GG--PDYIVLKNLDTDSVRV-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFT 257
                  D+I L++     +++ I   L QS+    F   V   +   A +   + +TG+  
Sbjct:   343 ARIYNDFISLRDPRNYMIKLAISHALAQSVKTSLFEDLVSETISNTAPLPAQIAQTGSVN 402

Query:   258 MDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLD 317
             + R ++   VG+      ++ L+  + +  E+ W + +   +Y+ +R   E+ QR   L 
Sbjct:   403 LSRRQINMQVGELFILRINIHLQGSVLDSPELMWAEPQLEPVYQAVRSYLEMDQRVSLLT 462

Query:   318 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
              +L  +   +  L++ + +R  + LEW +I L+  E +++   IV D
Sbjct:   463 ERLDVIADLLAVLKDQLTHRHGEYLEWIVIVLIAAEILVAAINIVVD 509

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VIII0374 SubName- Full=Putative uncharacterized protein; (366 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam02582	174	pfam02582, DUF155, Uncharacterized ACR, YagE famil	2e-43
COG1723	331	COG1723, COG1723, Uncharacterized conserved protei	8e-19

>gnl|CDD|217121 pfam02582, DUF155, Uncharacterized ACR, YagE family COG1723

 Score =  148 bits (377), Expect = 2e-43
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 4/175 (2%)

Query: 145 YMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEM--RKDDYAIKEKPLLAEDMQGG 202
            + +F YG  V + + + E +++L  ++  AS  LPE     +DY     P L   ++  
Sbjct: 1   DVFLFRYGVVVFWGLSEEEEKDFLSDLKSFASEPLPEPEVETEDYDFVIDPNLKPRIEN- 59

Query: 203 PDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTK 262
            D IVL + D      I   L QS+ L  F  QVD L+E    +   + KTG   + R +
Sbjct: 60  -DIIVLPSSDLLDKLAISHALAQSVKLSVFEEQVDNLLESTEPLPEELAKTGKLNLSRKE 118

Query: 263 LIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLD 317
           L++L+G+  S    + L   L +  +  W + +   +Y  LRE  E+ +R   L+
Sbjct: 119 LLKLIGELLSLRHRINLYSDLLDTPDFFWDEPELEPLYLALREYLEIKERINVLN 173

Length = 174

>gnl|CDD|224637 COG1723, COG1723, Uncharacterized conserved protein [Function unknown]

 Score = 85.9 bits (213), Expect = 8e-19
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 12/223 (5%)

Query: 146 MVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKD------DYAIKEKPLLAEDM 199
              F YG  V +   + E +N L  I +  S  L E   +      +    EKP +  D 
Sbjct: 108 AFFFPYGVVVFWGFSESEEKNILRDITKAESNPLKEPEIETEEFHYNVTETEKPRIFNDK 167

Query: 200 QGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMD 259
                 I+L++ +  +   I   L QS+ L  F   VD  +++   I + + +TG  ++ 
Sbjct: 168 ------IILRSSNVFTKLAISHALAQSVKLSVFEESVDNTIDQTKPIPQELARTGKVSLS 221

Query: 260 RTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFK 319
           R ++++ +GK       + L   + +  E  W + +   +Y  +RE  ++  R   L+ +
Sbjct: 222 RKEILKQIGKLFLLRVSINLHSDILDTPEFFWSEPQLEPLYLAVREYLDINPRVNVLNRR 281

Query: 320 LKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIV 362
           L+ +   +  L E + +  S  LEW +I L+ +E ++S+Y I+
Sbjct: 282 LEVISDLLDILNEQLNHSHSTRLEWIVIILIGLEVLLSLYNII 324

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
COG1723	331	Uncharacterized conserved protein [Function unknow	100.0
KOG2861	399	consensus Uncharacterized conserved protein [Funct	100.0
PF02582	175	DUF155: Uncharacterised ACR, YagE family COG1723;	100.0
PRK11085	316	magnesium/nickel/cobalt transporter CorA; Provisio	88.27
PF00352	86	TBP: Transcription factor TFIID (or TATA-binding p	86.0

>COG1723 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.6e-65  Score=490.56  Aligned_cols=273  Identities=22%  Similarity=0.344  Sum_probs=239.8

Q ss_pred             CCCeeeEEEEeccCccChhhHHHHhhcCCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC
Q 017028           81 EIGKIPVKAYFLSTSIDLKSMQAENLTHVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE  160 (379)
Q Consensus        81 ~~~~~~v~Ay~lae~idL~~L~~~l~~~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~  160 (379)
                      +.+-++|+|||+|++||++.|.+.++.+...+....        .++.+....++   ..++.+++|+|.||||||||++
T Consensus        54 ~~~~~R~taYct~~~y~l~~L~~~LK~~~l~p~~y~--------e~v~~~~~e~~---~~~~~~~~f~f~yGvVV~Wg~s  122 (331)
T COG1723          54 ELKLMRCTAYCTASGYRLKVLFKLLKKNGLYPSVYN--------EDVLSLMPEMN---TDEEFGEAFFFPYGVVVFWGFS  122 (331)
T ss_pred             hhccceeeeEeccccccHHHHHHHhhhccCChhHHH--------HHHHhcchhhc---CCcccceEEEecCceEEEeCCc
Confidence            456789999999999999999999875421111000        11111001111   2355789999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccCCCcccccceEEE--ecCCcccccccCCCEEEecCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 017028          161 DHEVENYLHIIRRHASGMLPEMRKDDYAIK--EKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDC  238 (379)
Q Consensus       161 ~~e~~~~L~~L~~~~~~~~~~~e~Ed~~~~--~~p~~~~~~~i~~D~I~L~~~d~~~~~aiS~aLAQSVkL~~~E~~vd~  238 (379)
                      +.|+..||..+.+++.+|+.+++.|..+|.  +.+  .++.++.+|.|+|++.+...+++|||||||||||++||+.+++
T Consensus       123 e~eE~~iL~~i~~~~~~~L~e~e~E~e~fhy~~~~--~~~prI~nD~I~L~s~~~~~klaiS~aLAQSVkLs~fE~~v~~  200 (331)
T COG1723         123 ESEEKNILRDITKAESNPLKEPEIETEEFHYNVTE--TEKPRIFNDKIILRSSNVFTKLAISHALAQSVKLSVFEESVDN  200 (331)
T ss_pred             HHHHhhHHHhhhhcccCCCCCccceEEEEEeeeec--ccCceeECCEEEEcCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999987765555444  444  3456788999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHhhhhccccccchhhhccchhHHHHHHHHHHhchhhHHHHHHH
Q 017028          239 LVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDF  318 (379)
Q Consensus       239 ~ie~~~~i~~~Lak~G~i~lsrk~llk~iG~l~~~r~~inl~~~lLD~Pe~~We~p~le~lY~~l~~~~EI~~R~~~Ln~  318 (379)
                      +|+.++++|+.|+++|+++++|++++|++|++|..|+++||+++|||+|||||++|+|+++|.++++|+||++|+++||+
T Consensus       201 ti~~t~~~pq~la~~gkvslsr~eilk~iG~LFllR~~iNL~s~IlDtPef~W~ePqleplY~~~~~yLdI~~RvnvLN~  280 (331)
T COG1723         201 TIDQTKPIPQELARTGKVSLSRKEILKQIGKLFLLRVSINLHSDILDTPEFFWSEPQLEPLYLAVREYLDINPRVNVLNR  280 (331)
T ss_pred             HHHhcchhHHHHhhcCCccccHHHHHHHHhHHhheeeeeeeeeccccCchhcccCcchhHHHHHHHHHhchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 017028          319 KLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDST  366 (379)
Q Consensus       319 KL~~i~e~~~~L~e~l~~~~s~rLEWIIIiLI~vEIvl~l~~~~~~~~  366 (379)
                      ||++|.|++++|.+.++++|+++||||||+||++||++++++++.+..
T Consensus       281 Rl~vi~d~l~il~e~ln~~~s~~lEWivIiLI~~eVllsl~~i~~~~~  328 (331)
T COG1723         281 RLEVISDLLDILNEQLNHSHSTRLEWIVIILIGLEVLLSLYNIIVKYI  328 (331)
T ss_pred             HHHHHHHHHHHHHHHhhhcccceeEEEehhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998864

>KOG2861 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.7e-58  Score=461.23  Aligned_cols=284  Identities=29%  Similarity=0.432  Sum_probs=226.6

Q ss_pred             CCeeeEEEEeccCccChhhHHHHhhc--------------CCCCCCCCCCcceEEEecCCCcc-c-ccccccCCCCceeE
Q 017028           82 IGKIPVKAYFLSTSIDLKSMQAENLT--------------HVVPPSSRSTKYIALRYSDFPSE-I-SALGVHGNVSHCRY  145 (379)
Q Consensus        82 ~~~~~v~Ay~lae~idL~~L~~~l~~--------------~~~p~~~~~~~~l~l~~~~~~~~-~-~~~~~~~~~~~~~~  145 (379)
                      ......+|||+++.+.++.+.+.+.+              ...++.....++......+.... + ...|.....++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~e  169 (399)
T KOG2861|consen   90 SLLPRETAYCTEETLGLKELRKYFKSTSLLTKLGLAEFNECLYEPTSFNTNYVGLDFSDKSDSSIKPLNGSINGSGEFSE  169 (399)
T ss_pred             hhccchhccchhhhcCcchHHHHHHHhhhhhhcchhhhhhcccCccccccccccccccCccccccccccccccCCCCcce
Confidence            34557889999999998877765432              11222222223333222211100 0 11222222347899


Q ss_pred             EEEEcCCcEEEEeCChHHHHHHHHHHHHhhccCCCc-ccccceE-----EEecCCcccccccCCCEEEecCCCch-hHHH
Q 017028          146 MVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPE-MRKDDYA-----IKEKPLLAEDMQGGPDYIVLKNLDTD-SVRV  218 (379)
Q Consensus       146 vfiF~yGvVVfwn~~~~e~~~~L~~L~~~~~~~~~~-~e~Ed~~-----~~~~p~~~~~~~i~~D~I~L~~~d~~-~~~a  218 (379)
                      +|||+||||||||+++.|++.+|..+++|+.+|+.. ...+|++     +.+....  ...+.+|.|++.+.+.. .+.+
T Consensus       170 ifvF~yGvvVfwn~s~~q~~~iL~~le~~e~~~~~~~l~~~e~ev~~~~~~~t~~~--~~~~~~~~i~l~~~~~~l~k~a  247 (399)
T KOG2861|consen  170 IFVFRYGVVVFWNVSENQEKHILKELERHEYGPLEIALDEEESEVEEFTYLITGST--FRRGINDDIVLDDSDNILIKLA  247 (399)
T ss_pred             EEEEecceEEEEecChhHHHhHHHHHHHhccccchhhhchhhhhhhcccccccccc--ccccccceeEEecccchhHHHH
Confidence            999999999999999999999999999999986432 2233333     3333221  11234567777666655 4557


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHhhhhccccccchhhhccchhHH
Q 017028          219 IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQ  298 (379)
Q Consensus       219 iS~aLAQSVkL~~~E~~vd~~ie~~~~i~~~Lak~G~i~lsrk~llk~iG~l~~~r~~inl~~~lLD~Pe~~We~p~le~  298 (379)
                      ||+||||||||++||++||++|++++++|+.|+++|+++++|++++|++|++|.+|+++||+++|||+|||+|++|+|++
T Consensus       248 iS~alaQSvKL~~~E~~vd~~I~s~~~ipe~la~~gkl~lsr~e~lk~iGkLf~LR~~INL~s~lLdtPdf~W~ep~Le~  327 (399)
T KOG2861|consen  248 ISHALAQSVKLSYFESLVDKTIESTTDIPESLALGGKLTLSREELLKKIGKLFALRHDINLSSGLLDTPDFYWDEPQLEP  327 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCeecccHHHHHHHHHHHHHHheeeecccccccCcccccCchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 017028          299 IYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTG  367 (379)
Q Consensus       299 lY~~l~~~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~~~s~rLEWIIIiLI~vEIvl~l~~~~~~~~~  367 (379)
                      ||+++++||||++|+++||+||++|.|++++|.+.++++|+.+||||||+||++||++++++++.+...
T Consensus       328 iY~~~r~yleI~qRv~vLN~kl~~i~~~~~~l~e~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~~~~~  396 (399)
T KOG2861|consen  328 IYEATRRYLEIGQRVNVLNYKLKVIEDLLDILQENLNERHSERLEWIIIILIAFEVAIEIYQIVVRYLS  396 (399)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccceehhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999988754

>PF02582 DUF155: Uncharacterised ACR, YagE family COG1723; InterPro: IPR003734 This entry describes proteins of unknown function

Probab=100.00  E-value=8.3e-46  Score=336.37  Aligned_cols=173  Identities=28%  Similarity=0.465  Sum_probs=165.8

Q ss_pred             EEEEEcCCcEEEEeCChHHHHHHHHHHHHhhccCCCccc--ccceEEEecCCcccccccCCCEEEecCCCchhHHHHHHH
Q 017028          145 YMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMR--KDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSV  222 (379)
Q Consensus       145 ~vfiF~yGvVVfwn~~~~e~~~~L~~L~~~~~~~~~~~e--~Ed~~~~~~p~~~~~~~i~~D~I~L~~~d~~~~~aiS~a  222 (379)
                      +||+|+||||||||+++++++.+|+.|++++.+|+++..  .|+|.+..+++. ....+.+|.|+|++.+...+++||+|
T Consensus         1 dvf~F~~G~vVfw~~~~~~~~~~l~~l~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~i~~d~i~l~~~~~~~~~aiS~~   79 (175)
T PF02582_consen    1 DVFLFRYGVVVFWGVSEEEEKQFLDYLKPFEEEPLSEPEVETEEMNYIYDPNL-PKSRIQNDIIVLPELDVLEKLAISHA   79 (175)
T ss_pred             CEEEecCcEEEEEeCCHHHHHHHHHHHHHHHhCCCccccceeEEEEEEEeCCC-CCceEECCEEEEcccchHHHHHHHHH
Confidence            489999999999999999999999999999999998766  999999999864 23467899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHhhhhccccccchhhhccchhHHHHHH
Q 017028          223 LGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEY  302 (379)
Q Consensus       223 LAQSVkL~~~E~~vd~~ie~~~~i~~~Lak~G~i~lsrk~llk~iG~l~~~r~~inl~~~lLD~Pe~~We~p~le~lY~~  302 (379)
                      |||||||++||+++++++++++++|+.|+++|+++++||+|+|++|+++..|+++|++.++||+||+||++|+|+++|++
T Consensus        80 LAqSv~L~~~E~~v~~~l~~~~~i~~~L~~~G~~~~~~k~l~k~~G~l~~~r~~i~l~~~ilD~Pe~~We~~~le~ly~~  159 (175)
T PF02582_consen   80 LAQSVKLDFFEEQVDKLLEETEPIPEELAKTGKLPLSRKELLKLIGELFSLRHDINLNSDILDTPEFFWENPELEPLYER  159 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHhhhcccCchhccCChhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhhHHHHHHH
Q 017028          303 LREEYEVAQRFGNLDF  318 (379)
Q Consensus       303 l~~~~EI~~R~~~Ln~  318 (379)
                      +++||||++|+++||+
T Consensus       160 l~~~lei~~R~~~Ln~  175 (175)
T PF02582_consen  160 LRRYLEIKERIRILNE  175 (175)
T ss_pred             HHHHcCHHHHHHHhcC
Confidence            9999999999999985

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional

Probab=88.27  E-value=15  Score=36.84  Aligned_cols=145  Identities=16%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             EEEecCCCchhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCccc------HHHHHHHHHH
Q 017028          205 YIVLKNLDTDSVRVIGSVL---------GQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMD------RTKLIQLVGK  269 (379)
Q Consensus       205 ~I~L~~~d~~~~~aiS~aL---------AQSVkL~~~E~~vd~~ie~~~~i~~~Lak~G~i~ls------rk~llk~iG~  269 (379)
                      .|+++..++.....+...+         ++.+-+..+|..||.+.+.++.+-..|.+-++--+.      =+++++.+|+
T Consensus       101 LvTvr~~~~~~f~~~~~r~~~~~~~~~~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~  180 (316)
T PRK11085        101 LFTLRERELPAFRLYRMRARSQTLVDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAE  180 (316)
T ss_pred             EEEEecCCcchHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHH
Confidence            3566666665554443332         356888999999999998888887776655442221      1467777776


Q ss_pred             HHH----HHHHhhhhccc---cccchhhhccchhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 017028          270 ANS----NLADVILKVGL---FERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLL  342 (379)
Q Consensus       270 l~~----~r~~inl~~~l---LD~Pe~~We~p~le~lY~~l~~~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~~~s~rL  342 (379)
                      +-.    .|..+.....+   +-++.- +.....+.+....++.-.+.++.+.+..|++.+.|....+.+.-+++-.-.|
T Consensus       181 l~~~~~~~r~~l~~~~r~l~~l~~~~~-~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~l  259 (316)
T PRK11085        181 LEDIGWKVRLCLMDTQRALNFLVRKAR-LPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIF  259 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            421    22222111111   112211 1223345566667777788888888888888887777666665555544444


Q ss_pred             hHHHHHHH
Q 017028          343 EWCIIFLL  350 (379)
Q Consensus       343 EWIIIiLI  350 (379)
                      -.+-++++
T Consensus       260 Tv~s~if~  267 (316)
T PRK11085        260 SVVSVVFL  267 (316)
T ss_pred             HHHHHHHH
Confidence            43333333

>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]

Probab=86.00  E-value=4.4  Score=32.55  Aligned_cols=68  Identities=19%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             EEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHHH
Q 017028           87 VKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHEV  164 (379)
Q Consensus        87 v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e~  164 (379)
                      |-.+.+.-.+||..++..+.. .+.|..+.   .++++..+               ..-.+-+|+.|.|++-|. ++++.
T Consensus        10 va~~~l~~~idL~~la~~~~~~~YePe~fp---gl~~r~~~---------------p~~t~~IF~sGki~itGaks~~~~   71 (86)
T PF00352_consen   10 VASFDLPFEIDLEELAEELENVEYEPERFP---GLIYRLRN---------------PKATVLIFSSGKIVITGAKSEEEA   71 (86)
T ss_dssp             EEEEE-SSEB-HHHHHHHSTTEEEETTTES---SEEEEETT---------------TTEEEEEETTSEEEEEEESSHHHH
T ss_pred             EEEEECCCccCHHHHHhhccCcEEeeccCC---eEEEeecC---------------CcEEEEEEcCCEEEEEecCCHHHH
Confidence            456789999999999998742 23444332   24444421               134689999999999998 66665


Q ss_pred             HHHHHHHH
Q 017028          165 ENYLHIIR  172 (379)
Q Consensus       165 ~~~L~~L~  172 (379)
                      ...++.+.
T Consensus        72 ~~a~~~i~   79 (86)
T PF00352_consen   72 KKAIEKIL   79 (86)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444443

TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 62/385 (16%), Positives = 128/385 (33%), Gaps = 100/385 (25%)

Query: 75  LADE---DEEI-GKIPVKAYFLS----TSIDLKSMQAENLTHVVPPS----SRSTKYIAL 122
           +A +     ++  K+  K ++L+     S +      + L + + P+    S  +  I L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 123 RYSDFPSEIS----------ALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYL---- 168
           R     +E+            L V  NV + +    F+    +L      +V ++L    
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 169 --HIIRRHASGMLPE------------MRKDDY---AIKEKPLL----AEDMQGGP---D 204
             HI   H S  L               R  D     +   P      AE ++ G    D
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 205 YIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAM-EKTGTFTMDR--- 260
               K+++ D +         +  ++  ++ ++    E+    R M ++   F       
Sbjct: 346 N--WKHVNCDKL---------TTIIESSLNVLE--PAEY----RKMFDRLSVFPPSAHIP 388

Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEY------------------ 302
           T L+ L+   +   +DV++ V    +  +  +  K + I                     
Sbjct: 389 TILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 303 -LREEYEVAQRFGNLDFKLK-----FVEHNIHFLQEVIQNRRSDLLEWCIIFL-LT-IEN 354
            + + Y + + F + D         F  H  H L+ +    R  L    ++FL    +E 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR--MVFLDFRFLEQ 505

Query: 355 VISVYEIVRDSTGVSLDLACRLGNF 379
            I       +++G  L+   +L  +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFY 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 42/293 (14%), Positives = 96/293 (32%), Gaps = 90/293 (30%)

Query: 138 GNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAE 197
           G   +    ++  +  A + N +  +V++    I          + K++          +
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----------LSKEEI---------D 52

Query: 198 DMQGGPD-----YIVLKNLDTDSVRVIGSVLGQSMALDY--------------------F 232
            +    D       +   L +    ++   + + + ++Y                    +
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 233 VSQVDCL---VEEFAGINRAMEKTGTFTMDRTKLIQL-------------VGKANSNLA- 275
           + Q D L    + FA  N +  +   +   R  L++L              GK  + +A 
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGK--TWVAL 168

Query: 276 DVILKVGLFER--SEIAWRDAKYAQIYEYLREE-----YEVAQRFGNLDFKLKFVEHNIH 328
           DV L   +  +   +I W + K     E + E      Y++   + +       ++  IH
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 329 FLQEVIQNRRSDLLEW-----CIIFLLTIENVISVYEIVRDSTGVSLDLACRL 376
            +Q         LL+      C   LL + NV +  +        + +L+C++
Sbjct: 229 SIQA----ELRRLLKSKPYENC---LLVLLNVQNA-KAWN-----AFNLSCKI 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1qnaa2	83	TATA-box binding protein (TBP), C-terminal domain	85.8
d1aisa2	89	TATA-box binding protein (TBP), C-terminal domain	84.34
d1mp9a2	101	TATA-box binding protein (TBP), C-terminal domain	84.1
d1mp9a1	92	TATA-box binding protein (TBP), C-terminal domain	83.06
d1aisa1	92	TATA-box binding protein (TBP), C-terminal domain	80.08

>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.80  E-value=2.3  Score=31.22  Aligned_cols=67  Identities=15%  Similarity=0.144  Sum_probs=44.7

Q ss_pred             EEEEeccCccChhhHHHHhhc--CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hHH
Q 017028           87 VKAYFLSTSIDLKSMQAENLT--HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DHE  163 (379)
Q Consensus        87 v~Ay~lae~idL~~L~~~l~~--~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~e  163 (379)
                      |-.++++..+||.+++.....  .+.|..+.+   +++|..+               ..-.+-+|..|-||+=|.. +++
T Consensus         4 Vas~~l~~~I~L~~la~~~~~~~~YePe~fpg---l~~R~~~---------------pk~~~lIF~SGkivitGaks~~~   65 (83)
T d1qnaa2           4 VGSCDVKFPIRLEGLAYSHAAFSSYEPELFPG---LIYRMKV---------------PKIVLLIFVSGKIVITGAKMRDE   65 (83)
T ss_dssp             EEEEECSSCBCHHHHHHHTTTTEECCTTTCSS---EEEEETT---------------TTEEEEECTTSEEEEEEESSHHH
T ss_pred             EEEEECCCCccHHHHHHhhhhhcccChhhCCe---EEEEECC---------------CCeEEEEEcCCEEEEECCCCHHH
Confidence            567889999999999876542  345555542   5555532               1236889999999999995 444


Q ss_pred             HHHHHHHH
Q 017028          164 VENYLHII  171 (379)
Q Consensus       164 ~~~~L~~L  171 (379)
                      ...-++.+
T Consensus        66 ~~~a~~~i   73 (83)
T d1qnaa2          66 TYKAFENI   73 (83)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=84.34  E-value=3  Score=31.00  Aligned_cols=70  Identities=11%  Similarity=0.081  Sum_probs=47.4

Q ss_pred             eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHH
Q 017028           86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHE  163 (379)
Q Consensus        86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e  163 (379)
                      -|....++..+||..++..+.. .+.|..+-   .+++|..+               -...+-+|+.|.+|+-|. ++++
T Consensus        13 iVas~~l~~~idL~~la~~~~~~~Y~Pe~fp---gli~R~~~---------------p~~t~lIF~SGKivitGaks~~~   74 (89)
T d1aisa2          13 MVFSGDIGREFNLDVVALTLPNCEYEPEQFP---GVIYRVKE---------------PKSVILLFSSGKIVCSGAKSEAD   74 (89)
T ss_dssp             EEEEEECSSCCCHHHHHHHSTTEECCTTTCS---SEEEEETT---------------TTEEEEECTTSEEEEEEESSHHH
T ss_pred             EEEEEECCCcccHHHHHhhccCcEECcccCc---eEEEEEcC---------------CcEEEEEEcCCEEEEEccCCHHH
Confidence            3566789999999999987642 34555543   25566532               124688999999999997 5666


Q ss_pred             HHHHHHHHHH
Q 017028          164 VENYLHIIRR  173 (379)
Q Consensus       164 ~~~~L~~L~~  173 (379)
                      ...-++.+.+
T Consensus        75 ~~~a~~~i~~   84 (89)
T d1aisa2          75 AWEAVRKLLR   84 (89)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6555555443

>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=84.10  E-value=2.8  Score=31.94  Aligned_cols=69  Identities=16%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHH
Q 017028           86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHE  163 (379)
Q Consensus        86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e  163 (379)
                      -|..+.++..+||..|+..+.. .+.|..+.   .+++|..+               ....+-+|+.|-+|+=|. +.++
T Consensus        13 iVas~~l~~~idL~~la~~~~~~~YePe~fp---gli~R~~~---------------pk~t~lIF~SGKivitGaks~~~   74 (101)
T d1mp9a2          13 IVASANLHVIVNLDKAAFLLENNMYEPEQFP---GLIYRMDE---------------PRVVLLIFSSGKMVITGAKREDE   74 (101)
T ss_dssp             EEEEEECSSEECHHHHHHHSSSEECCTTTCS---SEEEEETT---------------TTEEEEECTTSEEEEEEESSHHH
T ss_pred             EEEEEECCCcccHHHHHhhCCCCEECcccCC---eEEEEecC---------------CcEEEEEEcCCEEEEEccCCHHH
Confidence            3567889999999999987642 24454443   34555531               123688999999999996 5656


Q ss_pred             HHHHHHHHH
Q 017028          164 VENYLHIIR  172 (379)
Q Consensus       164 ~~~~L~~L~  172 (379)
                      ...-++.+.
T Consensus        75 ~~~a~~~i~   83 (101)
T d1mp9a2          75 VHKAVKKIF   83 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            554444443

>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=83.06  E-value=3.9  Score=30.42  Aligned_cols=68  Identities=18%  Similarity=0.181  Sum_probs=44.9

Q ss_pred             eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHH
Q 017028           86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHE  163 (379)
Q Consensus        86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e  163 (379)
                      -|....++..+||..|+..+.. .+.|..+.   .+++|..+               ..-.+-+|+.|.+|+=|. +.++
T Consensus        14 iVas~~l~~~idL~~la~~~~~~~YePe~fp---gli~R~~~---------------p~~t~lIF~SGkivitGaks~~~   75 (92)
T d1mp9a1          14 IVATVTLDQTLDLYAMERSVPNVEYDPDQFP---GLIFRLES---------------PKITSLIFKSGKMVVTGAKSTDE   75 (92)
T ss_dssp             EEEEEECCSCCCHHHHHHHSTTCBCCTTTCS---SEEEEETT---------------TTEEEEECTTSEEEEECCSSHHH
T ss_pred             EEEEEECCCcccHHHHHhhCCCCEECCccCc---eEEEEECC---------------CcEEEEEEcCCEEEEEccCCHHH
Confidence            3467788999999999887642 34454443   35555531               123577999999999998 5666


Q ss_pred             HHHHHHHH
Q 017028          164 VENYLHII  171 (379)
Q Consensus       164 ~~~~L~~L  171 (379)
                      ...-++.+
T Consensus        76 ~~~a~~~~   83 (92)
T d1mp9a1          76 LIKAVKRI   83 (92)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444443

>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=80.08  E-value=3  Score=31.17  Aligned_cols=69  Identities=16%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             EEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHHH
Q 017028           87 VKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHEV  164 (379)
Q Consensus        87 v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e~  164 (379)
                      |....++-.+||..|+..+.. .+.|..+.   .+++|..+               ....+-+|+.|.+|+=|. +.++.
T Consensus        15 Vas~~l~~~idL~~la~~~~~~~YePe~fp---gl~~R~~~---------------p~~~~lIF~sGkivitGakS~~~~   76 (92)
T d1aisa1          15 VASVDLFAQLDLEKVLDLCPNSKYNPEEFP---GIICHLDD---------------PKVALLIFSSGKLVVTGAKSVQDI   76 (92)
T ss_dssp             EEEEECCSCCCHHHHTTTSTTCBCCTTTCS---SEEEECSS---------------SCCEEEECTTSEEEEEEESSHHHH
T ss_pred             EEEEECCCCccHHHHHhhCCCCEECcccCC---eEEEEeCC---------------CcEEEEEECCCEEEEEccCCHHHH
Confidence            566778999999999765531 23444433   24445421               123688999999999997 56666


Q ss_pred             HHHHHHHHH
Q 017028          165 ENYLHIIRR  173 (379)
Q Consensus       165 ~~~L~~L~~  173 (379)
                      ..-++.+.+
T Consensus        77 ~~a~~~i~~   85 (92)
T d1aisa1          77 ERAVAKLAQ   85 (92)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555443