Citrus Sinensis ID: 017030
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 378 | 2.2.26 [Sep-21-2011] | |||||||
| P55229 | 522 | Glucose-1-phosphate adeny | yes | no | 0.928 | 0.672 | 0.852 | 0.0 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.931 | 0.728 | 0.847 | 1e-178 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.931 | 0.679 | 0.684 | 1e-150 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.928 | 0.672 | 0.680 | 1e-149 | |
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.931 | 0.748 | 0.664 | 1e-143 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.917 | 0.668 | 0.664 | 1e-140 | |
| P55231 | 521 | Glucose-1-phosphate adeny | no | no | 0.925 | 0.671 | 0.632 | 1e-137 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.925 | 0.669 | 0.626 | 1e-131 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.917 | 0.664 | 0.605 | 1e-126 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.917 | 0.663 | 0.602 | 1e-125 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/352 (85%), Positives = 331/352 (94%), Gaps = 1/352 (0%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
EKRD RTVA++ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 83 EKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 142
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQYNSASLNRHLARAYN +G+ FGDG VEVLAATQTPGE+GKRWFQGTADAVRQFHWLF
Sbjct: 143 TQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLF 201
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDYMDF+Q+HRQSGADI+ISC+P+DD RASDFGLMKI++
Sbjct: 202 EDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDD 261
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
+GRV+SFSEKPKG DLKAMAVDTT+LGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRF
Sbjct: 262 KGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRF 321
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PTANDFGSEIIP SA E ++ AYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA KP
Sbjct: 322 PTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKP 381
Query: 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
IYTSRRNLPPSKID+SK++DSIISHGSF+T+ IEHS+VGIRSR+ +NV LK
Sbjct: 382 IYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLK 433
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1613), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/353 (84%), Positives = 326/353 (92%), Gaps = 1/353 (0%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+K DARTV A+ILGGGAGTRL+PLTK+RAKPAVP+GGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 42 KKGDARTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYIL 101
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NSASLNRH+ARAYN+G+GVTF G VEVLAATQTPGE GKRWFQGTA AVRQFHWLF
Sbjct: 102 TQFNSASLNRHIARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLF 161
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDY+ FVQ+HRQSGADITIS LP+DDSRASDFGLMKI++
Sbjct: 162 EDARSKDIEDVLILSGDHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKIDD 221
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG-VYLFKKEILLNLLRWR 240
GRV+SFSEKPKG DLKAMAVDTTVLGLS +EA+EKPYIAS+G VY+FKK+ILLNLLRWR
Sbjct: 222 TGRVMSFSEKPKGDDLKAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWR 281
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPAS E +KAYLFNDYWEDIGTIRSFF ANLALT HPP FSFYDATK
Sbjct: 282 FPTANDFGSEIIPASTKEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATK 341
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
PIYTSRRNLPPS ID+SKIVDSI+SHG F+T+ F+EHSVVGIRSRI NVHLK
Sbjct: 342 PIYTSRRNLPPSAIDNSKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLK 394
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 241/352 (68%), Positives = 294/352 (83%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+ D + VA++ILGGGAGTRL+PLT +RAKPAVPIGG YRLID+PMSNCINSGI K++IL
Sbjct: 78 QNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFIL 137
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NS SLNRHL+R YN+G+GV FGDG VEVLAATQT G+AGK+WFQGTADAVRQF W+F
Sbjct: 138 TQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVF 197
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED + K +E VLILSGDHLYRMDYM+FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+
Sbjct: 198 EDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQ 257
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
G+++ FSEKPKG DLKAM VDT++LGL +EA E PYIASMGVY+F+KE+LL LLR +
Sbjct: 258 SGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSY 317
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PT+NDFGSEIIP + E ++A+LFNDYWEDIGTI SFF+ANLALT PP F FYD P
Sbjct: 318 PTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTP 377
Query: 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
+TS R LPP+K+D +I+DSI+SHG F+ ++HS+VGIRSR+ + V L+
Sbjct: 378 FFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQ 429
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 239/351 (68%), Positives = 290/351 (82%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA++LGGGAGTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILT
Sbjct: 83 KADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NS SLNRHLAR YN+G GV FGDG VEV AATQTPGE+GK+WFQGTADAVRQF W FE
Sbjct: 143 QFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFE 202
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D ++K +E ++ILSGDHLYRMDYM F Q H + ADIT+SC+PMDDSRASD+GLMKI++
Sbjct: 203 DSKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSCIPMDDSRASDYGLMKIDHT 262
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GR++ F+EKPKG DL AM VDTTVLGLS EA PYIASMGVY+F+ ++L+ LL ++P
Sbjct: 263 GRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYP 322
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIP++ E ++AYLFNDYWEDIGTI+SFF++NLALT PP F FYD P
Sbjct: 323 SSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPF 382
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
YTS R LPP+K+D KIVDSI+SHG F+ S I+HS+VG+RSR+ + V +
Sbjct: 383 YTSARFLPPTKVDRCKIVDSIVSHGCFLQESSIQHSIVGVRSRLESGVEFQ 433
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 236/355 (66%), Positives = 295/355 (83%), Gaps = 3/355 (0%)
Query: 1 MEKRDA--RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKV 58
+E+R A + VAAVILGGG GT+L+PLT + A PAVP+GG YRLID+PMSNCINS INK+
Sbjct: 28 LERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAVPVGGCYRLIDIPMSNCINSAINKI 87
Query: 59 YILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118
++LTQYNSA LNRH+AR Y +G+GV+FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F
Sbjct: 88 FVLTQYNSAPLNRHIARTY-FGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFI 146
Query: 119 WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK 178
W+FED +NK IE++++LSGDHLYRMDYM+ VQNH ADIT+SC P +DSRASDFGL+K
Sbjct: 147 WVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHIDRNADITLSCAPAEDSRASDFGLVK 206
Query: 179 INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238
I++ GRV+ F+EKPKG DLKAM VDTT++GLS Q+A++ PYIASMGVY+FK ++LL LL+
Sbjct: 207 IDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAKKSPYIASMGVYVFKTDVLLKLLK 266
Query: 239 WRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
W +PT+NDFGSEIIPA+ ++ ++AY+F DYWEDIGTI+SF+ A+LALT P F FYD
Sbjct: 267 WSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGTIKSFYNASLALTQEFPEFQFYDP 326
Query: 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P YTS R LPP+KID+ KI D+IISHG F+ +EHS+VG RSR++ V LK
Sbjct: 327 KTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCSVEHSIVGERSRLDCGVELK 381
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 232/349 (66%), Positives = 284/349 (81%), Gaps = 2/349 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D + VA+VILGGG GTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILTQ+
Sbjct: 84 DPKAVASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQF 143
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NS SLNRHLA YN+G+GV FGDG VEVLA TQTPG+ K WFQ ADAVR+F W+FE+
Sbjct: 144 NSFSLNRHLA-TYNFGNGVGFGDGFVEVLAGTQTPGDGRKMWFQA-ADAVREFIWVFENQ 201
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
+NK +E ++ILSGDHLYRM+YMDFVQ H + ADIT+SC+PMDD RASDFGLMKI+ G
Sbjct: 202 KNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCVPMDDGRASDFGLMKIDETGA 261
Query: 185 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244
++ F+EKPKG LKAM VDT++LGLS+QEA PYIASMGVY+FK ++LLNLL+ +P+
Sbjct: 262 IIQFAEKPKGPALKAMQVDTSILGLSEQEASNFPYIASMGVYVFKTDVLLNLLKSAYPSC 321
Query: 245 NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 304
NDFGSEIIP++ + ++AYLFNDYWEDIGT++SFF+ANLALT PP F F D P YT
Sbjct: 322 NDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTVKSFFDANLALTKQPPKFDFNDPKTPFYT 381
Query: 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
S R LPP+K+D S+IVD+IISHG F+ I+HS+VG+RSR++ V K
Sbjct: 382 SARFLPPTKVDKSRIVDAIISHGCFLRECNIQHSIVGVRSRLDYGVEFK 430
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 222/351 (63%), Positives = 283/351 (80%), Gaps = 1/351 (0%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ D + VAA+ILGGG G +L+PLTK+ A PAVP+GG YR+ID+PMSNCINS INK+++LT
Sbjct: 83 RADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 143 QFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 201
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE+++ILSGDHLYRM+YMDFVQ+H S ADIT+SC P+D+SRAS++GL+ I+
Sbjct: 202 DAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRS 261
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+ GLS QEA + PYIASMGVY FK E LL LL WR+P
Sbjct: 262 GRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYP 321
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIPA+ + ++ Y++ DYWEDIGTI+SF+EAN+AL P F FYD P
Sbjct: 322 SSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPF 381
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
YTS R LPP+K + +IV+S+ISHG F+ I+ S++G RSR++ V L+
Sbjct: 382 YTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQ 432
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/351 (62%), Positives = 275/351 (78%), Gaps = 1/351 (0%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA+ILGGG G +L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LT
Sbjct: 85 KVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLT 144
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y G VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 145 QFNSASLNRHLARTYFGNGINFGGGF-VEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 203
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE++LILSGDHLYRM+YMDFVQ+H S ADIT+SC P+ +SRAS+FGL+KI+
Sbjct: 204 DAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRG 263
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+LGLS QEA + PYIASMGVY FK E LLNLL ++P
Sbjct: 264 GRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYP 323
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSE+IPA+ + ++ Y+F DYWEDIGTI++F+EANLAL P F FYD P
Sbjct: 324 SSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPF 383
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
YTS R LPP+K + ++VDSIISHG F+ ++ S++G RSR++ V L+
Sbjct: 384 YTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQ 434
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/350 (60%), Positives = 269/350 (76%), Gaps = 3/350 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D VAAVILGGG GT+L+PLT RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+
Sbjct: 86 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQF 145
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NSASLNRH+ R Y G G+ F DG VEVLAATQ PGEA WF+GTADAVR+F W+ ED
Sbjct: 146 NSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDY 203
Query: 125 -RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
+NK IE +LILSGD LYRMDYM+ VQ H ADIT+SC P+ +SRAS++GL+K ++ G
Sbjct: 204 YKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSG 263
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
RV+ FSEKPKG DL+AM VDT+ L + + + PYIASMGVY+FK+++LLNLL+ R+
Sbjct: 264 RVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAE 323
Query: 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
+DFGSEI+P + ++ ++AY+F DYWEDIGTIRSFF+AN+AL PP F FYD P +
Sbjct: 324 LHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFF 383
Query: 304 TSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
TS R LPP+K D +I ++IISHG F+ IEHS++G+RSR+N+ LK
Sbjct: 384 TSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELK 433
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/350 (60%), Positives = 269/350 (76%), Gaps = 3/350 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D VAAVILGGG GT+L+PLT RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+
Sbjct: 87 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQF 146
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NSASLNRH+ R Y G G+ F DG VEVLAATQ PGEA WF+GTADAVR+F W+ ED
Sbjct: 147 NSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDY 204
Query: 125 -RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
++K IE +LILSGD LYRMDYM+ VQ H ADIT+SC P+ +SRAS++GL+K ++ G
Sbjct: 205 YKHKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSG 264
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
RV+ FSEKPKG DL+AM VDT+ L + + + PYIASMGVY+FK+++LLNLL+ R+
Sbjct: 265 RVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAE 324
Query: 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
+DFGSEI+P + ++ ++AY+F DYWEDIGTIRSFF+AN+AL PP F FYD P +
Sbjct: 325 LHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFF 384
Query: 304 TSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
TS R LPP+K D +I ++IISHG F+ IEHS++G+RSR+N+ LK
Sbjct: 385 TSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELK 434
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 378 | ||||||
| 225432564 | 520 | PREDICTED: glucose-1-phosphate adenylylt | 0.933 | 0.678 | 0.900 | 0.0 | |
| 297737003 | 482 | unnamed protein product [Vitis vinifera] | 0.933 | 0.732 | 0.900 | 0.0 | |
| 255552303 | 533 | glucose-1-phosphate adenylyltransferase, | 0.933 | 0.662 | 0.892 | 0.0 | |
| 359807441 | 520 | uncharacterized protein LOC100810451 [Gl | 0.933 | 0.678 | 0.886 | 0.0 | |
| 356563435 | 523 | PREDICTED: glucose-1-phosphate adenylylt | 0.933 | 0.674 | 0.883 | 0.0 | |
| 13487783 | 525 | ADP-glucose pyrophosphorylase [Cicer ari | 0.933 | 0.672 | 0.883 | 0.0 | |
| 449432718 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 0.933 | 0.676 | 0.878 | 0.0 | |
| 449515371 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 0.933 | 0.676 | 0.878 | 0.0 | |
| 449463124 | 518 | PREDICTED: glucose-1-phosphate adenylylt | 0.933 | 0.681 | 0.886 | 0.0 | |
| 224100249 | 528 | predicted protein [Populus trichocarpa] | 0.933 | 0.668 | 0.881 | 0.0 |
| >gi|225432564|ref|XP_002281069.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/353 (90%), Positives = 337/353 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 79 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 138
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G GV FGDG VE LAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 139 LTQFNSASLNRHLARAYNFGHGVNFGDGYVEALAATQTPGEAGKRWFQGTADAVRQFHWL 198
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI+
Sbjct: 199 FEDQRSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKID 258
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVL FSEKPKG+DLKAM VDT VLGLS++EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 259 NKGRVLFFSEKPKGEDLKAMEVDTKVLGLSREEAEKKPYIASMGVYVFKKEILLNLLRWR 318
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALTAHPP FSFYDATK
Sbjct: 319 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTAHPPRFSFYDATK 378
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P+YTSRRNLPPSKIDDSKIVDSIISHGSF+ + FIEHSVVGIRSR+N+NVHLK
Sbjct: 379 PMYTSRRNLPPSKIDDSKIVDSIISHGSFLNNCFIEHSVVGIRSRVNSNVHLK 431
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737003|emb|CBI26204.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/353 (90%), Positives = 337/353 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 41 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 100
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G GV FGDG VE LAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 101 LTQFNSASLNRHLARAYNFGHGVNFGDGYVEALAATQTPGEAGKRWFQGTADAVRQFHWL 160
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI+
Sbjct: 161 FEDQRSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKID 220
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVL FSEKPKG+DLKAM VDT VLGLS++EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 221 NKGRVLFFSEKPKGEDLKAMEVDTKVLGLSREEAEKKPYIASMGVYVFKKEILLNLLRWR 280
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALTAHPP FSFYDATK
Sbjct: 281 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTAHPPRFSFYDATK 340
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P+YTSRRNLPPSKIDDSKIVDSIISHGSF+ + FIEHSVVGIRSR+N+NVHLK
Sbjct: 341 PMYTSRRNLPPSKIDDSKIVDSIISHGSFLNNCFIEHSVVGIRSRVNSNVHLK 393
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552303|ref|XP_002517196.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223543831|gb|EEF45359.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/353 (89%), Positives = 338/353 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 92 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 151
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G+G+ FGDG VEVLAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 152 LTQFNSASLNRHLARAYNFGNGINFGDGFVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 211
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K I+DVL+LSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM I+
Sbjct: 212 FEDARSKDIDDVLVLSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMNID 271
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG DLKAMAVDTTVLGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 272 NKGRVLSFSEKPKGADLKAMAVDTTVLGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWR 331
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTI+SFF ANLALT HPP FSFYDA K
Sbjct: 332 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIQSFFAANLALTEHPPRFSFYDAAK 391
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P+YTSRRNLPPSKI++ KIVDSIISHGSF+T+SFIEHSVVGIRSRIN+NVHLK
Sbjct: 392 PMYTSRRNLPPSKIENCKIVDSIISHGSFLTNSFIEHSVVGIRSRINSNVHLK 444
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807441|ref|NP_001241391.1| uncharacterized protein LOC100810451 [Glycine max] gi|255639628|gb|ACU20108.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/353 (88%), Positives = 340/353 (96%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
ME+R+ RTV AVILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 79 MERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 138
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 139 LTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWL 198
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FEDPR+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 199 FEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKID 258
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG++LKAM VDTTVLGLSK EA++KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 259 NKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWR 318
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSE+IPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HPP FSFYDA K
Sbjct: 319 FPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAK 378
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P+YTSRRNLPPSKID+SKIVDSIISHGSF+ +SFIEHSVVGIRSRIN+N+HLK
Sbjct: 379 PMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLK 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563435|ref|XP_003549968.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/353 (88%), Positives = 340/353 (96%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
ME+R+ RTV AVILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 82 MERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 141
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 142 LTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWL 201
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FEDPR+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLM+I+
Sbjct: 202 FEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMRID 261
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GR+LSFSEKPKG++LKAM VDTTVLGLSK EA++KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 262 NKGRILSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWR 321
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSE+IPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HPP FSFYDA K
Sbjct: 322 FPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAK 381
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P+YTSRRNLPPSKID+SKIVDSIISHGSF+ +SFIEHSVVGIRSRIN+NVHLK
Sbjct: 382 PMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNVHLK 434
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13487783|gb|AAK27718.1|AF356002_1 ADP-glucose pyrophosphorylase [Cicer arietinum] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/353 (88%), Positives = 335/353 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
+EKRD TV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 84 LEKRDPSTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 143
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGE GK+WFQGTADAVRQFHWL
Sbjct: 144 LTQFNSASLNRHIARAYNSGTGVTFGDGYVEVLAATQTPGEQGKKWFQGTADAVRQFHWL 203
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 204 FEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKID 263
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG+DLKAM VDTTVLGLSK EA EKPYIASMGVY+FKKEILLNLLRWR
Sbjct: 264 NKGRVLSFSEKPKGEDLKAMQVDTTVLGLSKDEALEKPYIASMGVYVFKKEILLNLLRWR 323
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA K
Sbjct: 324 FPTANDFGSEIIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPSKFSFYDAAK 383
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P+YTSRRNLPPSKID+SKIVDSI+SHGSF+ +SFIEHSVVGIRSRIN+NVHLK
Sbjct: 384 PMYTSRRNLPPSKIDNSKIVDSIVSHGSFLNNSFIEHSVVGIRSRINSNVHLK 436
|
Source: Cicer arietinum Species: Cicer arietinum Genus: Cicer Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432718|ref|XP_004134146.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/353 (87%), Positives = 335/353 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 81 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 140
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+ GVTFGDG VEVLAATQTPGEAGK WFQGTADAVRQFHWL
Sbjct: 141 LTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGEAGKNWFQGTADAVRQFHWL 200
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 201 FEDARSKNIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCLPMDDSRASDFGLMKID 260
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+GR++SFSEKPKG+DLKAMAVDTT+LGLSK+EA++KPYIASMGVY+FKK+ILLNLLRWR
Sbjct: 261 EKGRIISFSEKPKGQDLKAMAVDTTILGLSKEEAQKKPYIASMGVYVFKKDILLNLLRWR 320
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYDA K
Sbjct: 321 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDAAK 380
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P++TSRRNLPP+KID SKIVDSIISHGSF+ S FIEHSV+GIRSRIN+NVHLK
Sbjct: 381 PMFTSRRNLPPTKIDQSKIVDSIISHGSFLNSCFIEHSVIGIRSRINSNVHLK 433
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515371|ref|XP_004164723.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/353 (87%), Positives = 335/353 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 81 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 140
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+ GVTFGDG VEVLAATQTPGEAGK WFQGTADAVRQFHWL
Sbjct: 141 LTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGEAGKNWFQGTADAVRQFHWL 200
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 201 FEDARSKNIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCLPMDDSRASDFGLMKID 260
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+GR++SFSEKPKG+DLKAMAVDTT+LGLSK+EA++KPYIASMGVY+FKK+ILLNLLRWR
Sbjct: 261 EKGRIISFSEKPKGQDLKAMAVDTTILGLSKEEAQKKPYIASMGVYVFKKDILLNLLRWR 320
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYDA K
Sbjct: 321 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDAAK 380
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P++TSRRNLPP+KID SKIVDSIISHGSF+ S FIEHSV+GIRSRIN+NVHLK
Sbjct: 381 PMFTSRRNLPPTKIDQSKIVDSIISHGSFLNSCFIEHSVIGIRSRINSNVHLK 433
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463124|ref|XP_004149284.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/353 (88%), Positives = 333/353 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD+RTV AVILGGGAGTRL+PLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 77 MEKRDSRTVVAVILGGGAGTRLFPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 136
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+GSGVT GDG VEVLAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 137 LTQFNSASLNRHLARAYNFGSGVTLGDGFVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 196
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SC+P+DDSRASDFGLMKI+
Sbjct: 197 FEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCIPIDDSRASDFGLMKID 256
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N GRV+SFSEKP+GKDLKAM VDTTVLGLSK EA KPYIASMGVY+FKKEILLN+LRWR
Sbjct: 257 NSGRVISFSEKPRGKDLKAMEVDTTVLGLSKDEALRKPYIASMGVYIFKKEILLNILRWR 316
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIP SA E +KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYD TK
Sbjct: 317 FPTANDFGSEIIPFSAREFLMKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDETK 376
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
PIYTSRRNLPP+KID+ KIVDSIISHG F+T+SFI+HSVVGIRSRIN+NVHLK
Sbjct: 377 PIYTSRRNLPPTKIDNCKIVDSIISHGCFLTNSFIDHSVVGIRSRINSNVHLK 429
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100249|ref|XP_002311802.1| predicted protein [Populus trichocarpa] gi|222851622|gb|EEE89169.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/353 (88%), Positives = 332/353 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 87 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 146
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQYNSASLNRHLARAYN G+GV+FGDG VE LAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 147 LTQYNSASLNRHLARAYNLGNGVSFGDGFVEALAATQTPGEAGKKWFQGTADAVRQFHWL 206
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FE PR+K IEDVLILSGDHLYRMDYMDFVQNHRQ GADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 207 FEGPRSKEIEDVLILSGDHLYRMDYMDFVQNHRQGGADITLSCLPMDDSRASDFGLMKID 266
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG DLKAM VDTTVLGLSK+EA +KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 267 NKGRVLSFSEKPKGVDLKAMEVDTTVLGLSKEEALKKPYIASMGVYVFKKEILLNLLRWR 326
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E ++KAYLFNDYWEDIGTIRSFF ANLALT HPP FSFYDA K
Sbjct: 327 FPTANDFGSEIIPASAKEFYMKAYLFNDYWEDIGTIRSFFAANLALTEHPPRFSFYDAAK 386
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
P+YTSRRNLPPSKID SKIVDSIISHGSF+ + FIEHSV+GIRSRIN+N HL+
Sbjct: 387 PMYTSRRNLPPSKIDSSKIVDSIISHGSFLNNCFIEHSVIGIRSRINSNAHLQ 439
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 378 | ||||||
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.928 | 0.672 | 0.821 | 1.8e-156 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.931 | 0.679 | 0.664 | 1.9e-129 | |
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.925 | 0.671 | 0.615 | 1.8e-119 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.925 | 0.669 | 0.618 | 2e-118 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.894 | 0.657 | 0.586 | 3.2e-104 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.886 | 0.644 | 0.581 | 2.3e-103 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.854 | 0.678 | 0.402 | 1.3e-59 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.833 | 0.773 | 0.338 | 4.8e-46 | |
| TIGR_CMR|VC_A0699 | 407 | VC_A0699 "glucose-1-phosphate | 0.833 | 0.773 | 0.338 | 4.8e-46 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.753 | 0.678 | 0.391 | 2.7e-45 |
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1525 (541.9 bits), Expect = 1.8e-156, P = 1.8e-156
Identities = 289/352 (82%), Positives = 317/352 (90%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
EKRD RTVA++ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 83 EKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 142
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQYNSASLNRHLARAYN +G+ FGDG VEVLAATQTPGE+GKRWFQGTADAVRQFHWLF
Sbjct: 143 TQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLF 201
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDYMDF+Q+HRQSGADI+ISC+P+DD RASDFGLMKI++
Sbjct: 202 EDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDD 261
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
+GRV+SFSEKPKG DLKAMAVDTT+LGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRF
Sbjct: 262 KGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRF 321
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PTANDFGSEIIP SA E ++ AYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA KP
Sbjct: 322 PTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKP 381
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLK 353
IYTSRRNLPP HGSF+T+ IEHS+VGIRSR+ +NV LK
Sbjct: 382 IYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLK 433
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
Identities = 234/352 (66%), Positives = 282/352 (80%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+ D + VA++ILGGGAGTRL+PLT +RAKPAVPIGG YRLID+PMSNCINSGI K++IL
Sbjct: 78 QNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFIL 137
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NS SLNRHL+R YN+G+GV FGDG VEVLAATQT G+AGK+WFQGTADAVRQF W+F
Sbjct: 138 TQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVF 197
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED + K +E VLILSGDHLYRMDYM+FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+
Sbjct: 198 EDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQ 257
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
G+++ FSEKPKG DLKAM VDT++LGL +EA E PYIASMGVY+F+KE+LL LLR +
Sbjct: 258 SGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSY 317
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PT+NDFGSEIIP + E ++A+LFNDYWEDIGTI SFF+ANLALT PP F FYD P
Sbjct: 318 PTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTP 377
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLK 353
+TS R LPP HG F+ ++HS+VGIRSR+ + V L+
Sbjct: 378 FFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQ 429
|
|
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
Identities = 216/351 (61%), Positives = 272/351 (77%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ D + VAA+ILGGG G +L+PLTK+ A PAVP+GG YR+ID+PMSNCINS INK+++LT
Sbjct: 83 RADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 143 QFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 201
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE+++ILSGDHLYRM+YMDFVQ+H S ADIT+SC P+D+SRAS++GL+ I+
Sbjct: 202 DAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRS 261
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+ GLS QEA + PYIASMGVY FK E LL LL WR+P
Sbjct: 262 GRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYP 321
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIPA+ + ++ Y++ DYWEDIGTI+SF+EAN+AL P F FYD P
Sbjct: 322 SSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPF 381
Query: 303 YTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLK 353
YTS R LPP HG F+ I+ S++G RSR++ V L+
Sbjct: 382 YTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQ 432
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 217/351 (61%), Positives = 271/351 (77%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA+ILGGG G +L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LT
Sbjct: 85 KVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLT 144
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FG G VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 145 QFNSASLNRHLARTY-FGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 203
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE++LILSGDHLYRM+YMDFVQ+H S ADIT+SC P+ +SRAS+FGL+KI+
Sbjct: 204 DAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRG 263
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+LGLS QEA + PYIASMGVY FK E LLNLL ++P
Sbjct: 264 GRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYP 323
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSE+IPA+ + ++ Y+F DYWEDIGTI++F+EANLAL P F FYD P
Sbjct: 324 SSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPF 383
Query: 303 YTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLK 353
YTS R LPP HG F+ ++ S++G RSR++ V L+
Sbjct: 384 YTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQ 434
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 203/346 (58%), Positives = 255/346 (73%)
Query: 5 DART-VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ 63
DA T V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ
Sbjct: 79 DASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ 138
Query: 64 YNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+NSASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 139 FNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPN--WFQGTADAVRQYLWLFEE 196
Query: 124 PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
+ V+E LIL+GDHLYRMDY F+Q HR++ +DIT++ LPMD+ RA+ FGLMKI+ EG
Sbjct: 197 --HNVME-FLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEG 253
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
R++ F+EKPKG+ LKAM VDTT+LGL A+E PYIASMG+Y+ K ++L LLR +FP
Sbjct: 254 RIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPG 313
Query: 244 ANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKP 301
ANDFGSE+IP + N ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + P
Sbjct: 314 ANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAP 373
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRIN 347
IYT R+LPP G I + I HSVVG+RS I+
Sbjct: 374 IYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIS 419
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
Identities = 199/342 (58%), Positives = 255/342 (74%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA 67
+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+NSA
Sbjct: 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK 127
SLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+ +
Sbjct: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HN 204
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
V+E LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR++
Sbjct: 205 VLE-YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKIDEEGRIIE 263
Query: 188 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247
F+EKPKG+ LKAM VDTT+LGL Q A+E P+IASMG+Y+ ++++L+LLR +FP ANDF
Sbjct: 264 FAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDF 323
Query: 248 GSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTS 305
GSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIYT
Sbjct: 324 GSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 383
Query: 306 RRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRIN 347
R LPP G I + I HSVVG+RS I+
Sbjct: 384 PRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIS 425
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 138/343 (40%), Positives = 203/343 (59%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
++VAA++ GGG+ + LYPLTK R+K A+PI YRLID +SNCINSGI K+Y +TQ+NS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 67 ASLNRHLARAYNYGSGVTFG-DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED-P 124
SLN HL++AY SG G D VEV+AA Q+ + G WFQGTADA+R+ W+FE+ P
Sbjct: 113 TSLNSHLSKAY---SGFGLGKDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP 167
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
+ + L+L G HLY+MDY +++HR+S ADITI L FG M++++
Sbjct: 168 ----VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITIVGLSSVTDHDFGFGFMEVDSTNA 223
Query: 185 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244
V F+ K + +DL ++A T ++ + + S G+Y+ +E ++ LLR +
Sbjct: 224 VTRFTIKGQ-QDLISVANRTA----TRSDGTSSCSVPSAGIYVIGREQMVKLLRECLIKS 278
Query: 245 NDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
D SEIIP + +E +KA++F+ YWED+ +I +++ AN+ + FYD P+Y
Sbjct: 279 KDLASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANMESIKS---YRFYDRQCPLY 335
Query: 304 TSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRI 346
T R LPP G + I SVVG+R+RI
Sbjct: 336 TMPRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRI 378
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| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 120/355 (33%), Positives = 176/355 (49%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG G+RL PLT RAKPAVP GG YR+ID ++NC++SG+ ++ +LTQY S SL+
Sbjct: 6 AVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKSHSLH 65
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+HL ++ F E + G +W++GTADA+ WL K
Sbjct: 66 KHLRNGWSI-----FNPELGEFITVVPPQMRKGGKWYEGTADALFHNMWLLARSDAKY-- 118
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
V++LSGDH+YRMDY ++ H A +TI+C+ + AS FG+M I+++ R+ F E
Sbjct: 119 -VVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITCFVE 177
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247
KP D + + +ASMG+Y+F ++L L +++DF
Sbjct: 178 KP---------ADPPCIPNRPDHS-----LASMGIYIFNMDVLKKALTEDAEIEQSSHDF 223
Query: 248 GSEIIPASANEQFLKAYLF--------ND-YWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
G ++IP + AY F D YW D+GTI SF++AN+ L P + Y
Sbjct: 224 GKDVIPKLIATGSVFAYSFCSGKGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLYQK 283
Query: 299 TKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFI------EHSVVGIRSRIN 347
I T + PP S I + I +HS++ RIN
Sbjct: 284 NWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRIN 338
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| TIGR_CMR|VC_A0699 VC_A0699 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 120/355 (33%), Positives = 176/355 (49%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG G+RL PLT RAKPAVP GG YR+ID ++NC++SG+ ++ +LTQY S SL+
Sbjct: 6 AVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKSHSLH 65
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+HL ++ F E + G +W++GTADA+ WL K
Sbjct: 66 KHLRNGWSI-----FNPELGEFITVVPPQMRKGGKWYEGTADALFHNMWLLARSDAKY-- 118
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
V++LSGDH+YRMDY ++ H A +TI+C+ + AS FG+M I+++ R+ F E
Sbjct: 119 -VVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITCFVE 177
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247
KP D + + +ASMG+Y+F ++L L +++DF
Sbjct: 178 KP---------ADPPCIPNRPDHS-----LASMGIYIFNMDVLKKALTEDAEIEQSSHDF 223
Query: 248 GSEIIPASANEQFLKAYLF--------ND-YWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
G ++IP + AY F D YW D+GTI SF++AN+ L P + Y
Sbjct: 224 GKDVIPKLIATGSVFAYSFCSGKGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLYQK 283
Query: 299 TKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFI------EHSVVGIRSRIN 347
I T + PP S I + I +HS++ RIN
Sbjct: 284 NWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRIN 338
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| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 123/314 (39%), Positives = 180/314 (57%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
R A+IL GG G+RL+ LT RAKPA+ GG +R+ID P+SNCINSGI +V ++TQY S
Sbjct: 12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKS 71
Query: 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRN 126
SL RH+ R + + G+ VE+L A+Q E W+QGTADAV Q + R+
Sbjct: 72 HSLIRHVMRGWGHFKK-ELGES-VEILPASQRYSE---NWYQGTADAVFQN---IDIIRH 123
Query: 127 KVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD-FGLMKINNEGRV 185
++ + V++LSGDH+YRMDY + H +SGAD+T+SCL + + A+ FG+M+++++ R+
Sbjct: 124 ELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRI 183
Query: 186 LSFSEKPK------GKDLKAMA-VDTTVLGLSKQ-EAEEKPYIASMGVYLFKKEILLNLL 237
L F EKP+ G K +A + V E +K + F K+I+ +++
Sbjct: 184 LGFEEKPQLPKHCPGNPEKCLASMGNYVFNTEFLFEQLKKDAQNAESDRDFGKDIIPSII 243
Query: 238 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD 297
A F S A NEQ YW D+GT+ SF+ AN+ L + P + YD
Sbjct: 244 EKHKVFAYPFKS----AFPNEQA--------YWRDVGTLDSFWLANMELLSPTPALNLYD 291
Query: 298 ATKPIYTSRRNLPP 311
A PI+T + LPP
Sbjct: 292 AKWPIWTYQEQLPP 305
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.6 | 0.8994 | 0.7925 | yes | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5868 | 0.9021 | 0.7911 | yes | no |
| P55229 | GLGL1_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.8522 | 0.9285 | 0.6724 | yes | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5947 | 0.8809 | 0.7762 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5791 | 0.8597 | 0.7575 | yes | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.8470 | 0.9312 | 0.7287 | N/A | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5914 | 0.8994 | 0.7925 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.6046 | 0.8862 | 0.7790 | yes | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5771 | 0.8994 | 0.7925 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5942 | 0.8994 | 0.7925 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.6063 | 0.8941 | 0.7878 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.6046 | 0.8862 | 0.7790 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.976 |
| 4th Layer | 2.7.7.27 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019926001 | RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (By similarity) (520 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00020983001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (507 aa) | • | • | • | • | 0.962 | ||||
 | GSVIVG00037251001 | SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (552 aa) | • | • | • | • | 0.960 | ||||
 | GSVIVG00017037001 | SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (501 aa) | • | • | • | • | 0.956 | ||||
 | GSVIVG00024166001 | RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (842 aa) | • | • | • | 0.930 | |||||
 | GSVIVG00021049001 | RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (760 aa) | • | • | • | 0.930 | |||||
 | GSVIVG00003051001 | RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (814 aa) | • | • | • | 0.928 | |||||
 | GSVIVG00010600001 | SubName- Full=Chromosome chr16 scaffold_271, whole genome shotgun sequence; (621 aa) | • | • | • | 0.923 | |||||
 | GSVIVG00030550001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (581 aa) | • | • | • | 0.923 | |||||
 | GSVIVG00034877001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (465 aa) | • | • | 0.911 | ||||||
 | GSVIVG00038116001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (543 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 378 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-155 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-131 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-100 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 7e-97 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 2e-91 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 5e-90 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-77 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 1e-45 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 2e-41 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 1e-26 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 1e-25 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 6e-21 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 3e-18 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 4e-18 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 2e-16 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 2e-11 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 6e-11 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 7e-11 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-09 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-09 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 6e-09 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 2e-08 | |
| TIGR02623 | 254 | TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti | 1e-07 | |
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 1e-07 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 2e-07 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 2e-06 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 4e-06 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 3e-05 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 1e-04 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 8e-04 | |
| PRK13389 | 302 | PRK13389, PRK13389, UTP--glucose-1-phosphate uridy | 0.001 | |
| TIGR01099 | 260 | TIGR01099, galU, UTP-glucose-1-phosphate uridylylt | 0.002 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 0.003 | |
| PRK14359 | 430 | PRK14359, glmU, bifunctional N-acetylglucosamine-1 | 0.003 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 0.004 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 710 bits (1836), Expect = 0.0
Identities = 263/349 (75%), Positives = 306/349 (87%), Gaps = 3/349 (0%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
++VAA+ILGGGAGTRL+PLTK+RAKPAVPIGG YRLID+PMSNCINSGINK+Y+LTQ+N
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAYN+G+G FGDG VEVLAATQTPGE G WFQGTADAVRQF WLFED +
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
NK +E+VLILSGDHLYRMDYMDFVQ HR+SGADITI+CLP+D+SRASDFGLMKI++ GR+
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
+ FSEKPKG +LKAM VDTTVLGLS +EA+EKPYIASMG+Y+FKK++LL LLRWRFPTAN
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 246 DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 304
DFGSEIIP + E + ++AYLF+ YWEDIGTI+SF+EANLALT PP FSFYD PIYT
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
S R LPPSKI+D +I DSIISHG F+ IEHSVVG+RSRI V ++
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIE 347
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Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 573 bits (1479), Expect = 0.0
Identities = 206/348 (59%), Positives = 265/348 (76%), Gaps = 10/348 (2%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
+ V A+ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCINSGINK+Y+LTQ+NS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRN 126
ASLNRH+++ YN+ F G VEVLAA QTP WFQGTADAVR++ W F++
Sbjct: 62 ASLNRHISQTYNFDG---FSGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEWD- 115
Query: 127 KVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 186
+++ LILSGD LYRMDY FVQ+HR++GADIT++ LP+D+ AS FGLMK +++GR+
Sbjct: 116 --VDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRIT 173
Query: 187 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246
FSEKPKG +LKAMAVDT+ LGLS +EA+ KPY+ASMG+Y+F +++L +LL + P D
Sbjct: 174 EFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTD 232
Query: 247 FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTS 305
FG EIIP + + +++YLF+ YWEDIGTI +F+EANLALT P P FSFYD PIYT
Sbjct: 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTR 292
Query: 306 RRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
R LPPSK+ D+ I +SII+ G I + I HSV+GIRSRI + ++
Sbjct: 293 ARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIE 340
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Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
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Score = 440 bits (1135), Expect = e-155
Identities = 161/351 (45%), Positives = 222/351 (63%), Gaps = 29/351 (8%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A++L GG G+RL PLTK+RAKPAVP GG YR+ID P+SNCINSGI ++ +LTQY S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
RH+ R +++ F DG V +L A Q E+G W+QGTADAV Q L ED E
Sbjct: 61 RHIQRGWDFD---GFIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDYD---PE 112
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
VLILSGDH+Y+MDY + H +SGAD+TI+C+P+ AS FG+M+++ +GR++ F E
Sbjct: 113 YVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEE 172
Query: 191 KP-KGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FPTAND 246
KP + M +ASMG+Y+F K++L LL +++D
Sbjct: 173 KPANPPSIPGM---------------PDFALASMGIYIFDKDVLKELLEEDADDPESSHD 217
Query: 247 FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSR 306
FG +IIP + E ++AYLF+ YW D+GTI SF+EAN+ L + P F YD PIYT
Sbjct: 218 FGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYN 277
Query: 307 RNLPPSKIDDS--KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVS 355
LPP+K DS ++VDS++S G I+ + + HSV+GIR RI + ++ S
Sbjct: 278 EFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDS 328
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This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-131
Identities = 141/354 (39%), Positives = 207/354 (58%), Gaps = 31/354 (8%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+ V A+IL GG G+RL PLTK RAKPAVP GG YR+ID +SNC+NSGI ++ +LTQY
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
S SLN H+ R + + +G V +L A Q G G+RW++GTADA+ Q +
Sbjct: 63 SHSLNDHIGRGWPWDLDRK--NGGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRSD 118
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
E VLILSGDH+Y+MDY D + H +SGAD+T++ + AS FG+M ++ GR+
Sbjct: 119 ---PEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRI 175
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW---RFP 242
+ F EKP + +ASMG+Y+F ++L LL
Sbjct: 176 IEFVEKPADGP-----PSNS--------------LASMGIYIFNTDLLKELLEEDAKDPN 216
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
+++DFG +IIP + AY F+ YW D+GTI S++EAN+ L + P + YD PI
Sbjct: 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPI 276
Query: 303 YTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVS 355
YT +NLPP+K +DS++ +S+++ G I+ + +E+SV+ RI ++ S
Sbjct: 277 YTKNKNLPPAKFVNDSEVSNSLVAGGCIISGT-VENSVLFRGVRIGKGSVIENS 329
|
Length = 393 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 303 bits (779), Expect = e-100
Identities = 134/365 (36%), Positives = 198/365 (54%), Gaps = 45/365 (12%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
R A+IL GG G+RL LT +RAKPAV GG +R+ID +SNCINSGI ++ +LTQY
Sbjct: 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK 72
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQ-TPGEAGKRWFQGTADAVRQFHWLFEDP 124
+ SL RH+ R +++ G+ V++L A Q E W++GTADAV Q +
Sbjct: 73 AHSLIRHIQRGWSFFRE-ELGEF-VDLLPAQQRVDEEN---WYRGTADAVYQNLDIIRRY 127
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
K V+IL+GDH+Y+MDY + +H +SGAD T++CL + AS FG+M ++ R
Sbjct: 128 DPKY---VVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR 184
Query: 185 VLSFSEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+ +F EKP + AM D L ASMG+Y+F + L LL
Sbjct: 185 ITAFVEKP--ANPPAMPGDPDKSL-------------ASMGIYVFNADYLYELLEEDAED 229
Query: 244 AN---DFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAH 289
N DFG +IIP E + A+ F+D YW D+GT+ ++++ANL L +
Sbjct: 230 PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASV 289
Query: 290 PPMFSFYDATKPIYTSRRNLPPSKI----DDSK--IVDSIISHGSFITSSFIEHSVVGIR 343
P YD PI+T + LPP+K + ++S++S G I+ + + SV+ R
Sbjct: 290 TPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSR 349
Query: 344 SRINA 348
R+N+
Sbjct: 350 VRVNS 354
|
Length = 425 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 7e-97
Identities = 129/368 (35%), Positives = 198/368 (53%), Gaps = 45/368 (12%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V A++L GG G RL PLT RAKPAVP GG+YRLID +SN +NSG ++Y+LTQY S S
Sbjct: 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHS 65
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L+RH+++ + SG+ + + A Q GKRW+ G+ADA+ Q L ED
Sbjct: 66 LDRHISQTWRL-SGLL--GNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP-- 117
Query: 129 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 188
+ V++ DH+YRMD V H +SGA +T++ + + AS FG+++++ +GR+ F
Sbjct: 118 -DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGF 176
Query: 189 SEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTA 244
EKP D + D L ASMG Y+F + L++ LR ++
Sbjct: 177 LEKP--ADPPGLPDDPDEAL-------------ASMGNYVFTTDALVDALRRDAADEDSS 221
Query: 245 NDFGSEIIPASANEQFLKAYLFND------------YWEDIGTIRSFFEANLALTAHPPM 292
+D G +IIP Y F+ YW D+GTI ++++A++ L + P+
Sbjct: 222 HDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281
Query: 293 FSFYDATKPIYTSRRNLPPSKIDDS-----KIVDSIISHGSFITSSFIEHSVVGIRSRIN 347
F+ Y+ PIYTS NLPP+K D DS++S GS I+ + + +SV+ +
Sbjct: 282 FNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVE 341
Query: 348 ANVHLKVS 355
+ ++ S
Sbjct: 342 SGAEVEDS 349
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 2e-91
Identities = 129/343 (37%), Positives = 182/343 (53%), Gaps = 50/343 (14%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL GG GTRL LTK AKPAVP GG YR+ID +SNC NSGI+ V +LTQY LN
Sbjct: 6 AMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELN 65
Query: 71 RHLARAYNYGSGVTFG----DGCVEVLAATQTPGEAGKRWFQGTADAVRQ-FHWLFE-DP 124
H+ G G + +G V +L G +W++GTA A+ Q ++ + DP
Sbjct: 66 NHI------GIGSPWDLDRINGGVTILPPYS--ESEGGKWYKGTAHAIYQNIDYIDQYDP 117
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL--PMDDSRASDFGLMKINNE 182
E VLILSGDH+Y+MDY + H++ AD+TI+ + P ++ AS FG+M +
Sbjct: 118 -----EYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE--ASRFGIMNTDEN 170
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
R++ F EKPK K +ASMG+Y+F + L L
Sbjct: 171 MRIVEFEEKPK---------------------NPKSNLASMGIYIFNWKRLKEYLIEDEK 209
Query: 243 TAN---DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
N DFG +IP E L AY F YW+D+GTI S +EAN+ L + +D
Sbjct: 210 NPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDR 269
Query: 299 TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVV 340
IY+ NLPP I +++K+ +S++ G + + +EHSV+
Sbjct: 270 NWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYGT-VEHSVL 311
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 270 bits (694), Expect = 5e-90
Identities = 89/283 (31%), Positives = 131/283 (46%), Gaps = 45/283 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINK-VYILTQYNSASL 69
A+IL GG+GTRL+PLT+ AKP VP+ Y +I +S +N+GI + + I TQ + +
Sbjct: 2 AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
L +G ++V A Q GTA AV D +
Sbjct: 62 AEQLGDGSKFG---------LQVTYALQPEPR-------GTAPAVALAADFLGD--DDP- 102
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
E VL+L GDH+YRMD+ + VQ R AD T++ + + +G+++ + GRV+ F
Sbjct: 103 ELVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFV 162
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTANDF 247
EKP + ASMG+Y F + L L + D
Sbjct: 163 EKPDL--------------------PKASNYASMGIYFFNSGVFLFLAKYLKELARGEDE 202
Query: 248 GSEIIPASANEQFLK-AYLFND--YWEDIGTIRSFFEANLALT 287
++ IPA+ + L A+LF YW D+GT S +EANL L
Sbjct: 203 ITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLL 245
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 4e-77
Identities = 103/264 (39%), Positives = 129/264 (48%), Gaps = 65/264 (24%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL GG GTRL PLTK+RAKPAVP GG YRLID P+SN +NSGI V +LTQY S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
HL + G + +L Q G W++GTADA+ Q E E
Sbjct: 61 DHLGSGKEWD-LDRKNGG-LFILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---E 112
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
VLILSGDH+Y MDY + + H +SGA
Sbjct: 113 YVLILSGDHIYNMDYREMLDFHIESGA--------------------------------- 139
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF-PTANDFGS 249
D TV+ Y ASMG+Y+F K++L+ LL ++DFG
Sbjct: 140 ------------DITVV-----------YKASMGIYIFSKDLLIELLEEDAADGSHDFGK 176
Query: 250 EIIPASANEQFLKAYLFNDYWEDI 273
+IIPA + + AY FN YW DI
Sbjct: 177 DIIPAMLKKLKIYAYEFNGYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-45
Identities = 71/264 (26%), Positives = 119/264 (45%), Gaps = 47/264 (17%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL G GTRL PLT R KP +PI G +++ + +GI+++ ++ Y +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQIE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ +G + + Q GTA AVR D +
Sbjct: 60 EYFGDGSKFGVNIEY---------VVQEEPL-------GTAGAVRNAEDFLGD------D 97
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D L+++GD L +D + ++ HR+ GAD TI+ ++D S +G+++++++GRV F E
Sbjct: 98 DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--PSRYGVVELDDDGRVTRFVE 155
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KP + +A+ G+Y+F+ EI L+ + P D ++
Sbjct: 156 KPT---------------------LPESNLANAGIYIFEPEI-LDYIPEILPRGEDELTD 193
Query: 251 IIPASANEQFLKAYLFNDYWEDIG 274
IP E + Y + YW DIG
Sbjct: 194 AIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 2e-41
Identities = 92/373 (24%), Positives = 147/373 (39%), Gaps = 79/373 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL PLT R KP +PI G LI+ + +G+ ++ ++ Y +
Sbjct: 4 AVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVVGYLGEQIE 62
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQF-HWLFEDPRNKVI 129
+ G +T+ V GTA A++ L
Sbjct: 63 EYFGDGEGLGVRITY----VVEKEPL------------GTAGALKNALDLL-------GG 99
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSF 188
+D L+L+GD L +D + ++ H++ GA TI L S+FG+++ + +GRV+ F
Sbjct: 100 DDFLVLNGDVLTDLDLSELLEFHKKKGALATI-ALTRVLDP-SEFGVVETDDGDGRVVEF 157
Query: 189 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG 248
EKP E + + G+Y+F E+ + DF
Sbjct: 158 REKPG-------------------PEEPPSNLINAGIYIFDPEVFDYI---EKGERFDFE 195
Query: 249 SEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN-LALTAHPPMFSFYDAT------- 299
E++PA A + + + Y+F YW DIGT EAN L L
Sbjct: 196 EELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS 255
Query: 300 ----KPIYTSRRN--------LPPSKI-------DDSKIVDSIISHGSFITS-SFIEHSV 339
P+ P + I + +I +SII I S+I S+
Sbjct: 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSI 315
Query: 340 VGIRSRINANVHL 352
+G +I A++ +
Sbjct: 316 IGENCKIGASLII 328
|
Length = 358 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL + K KP P+ G ++ + GI+++ + Y + +
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGYLAEQIE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ Y G P GT A++ K+ E
Sbjct: 60 EYFGDGYR--------GGIRIYYVIEPEP--------LGTGGAIKNA-------LPKLPE 96
Query: 131 D-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
D L+L+GD + +D + + R SGAD T++ + D AS +G + ++ +GRV++F
Sbjct: 97 DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFV 154
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EK G I GVYL +KEIL + F +
Sbjct: 155 EKGPG--------------------AAPGLING-GVYLLRKEILAEIPADAF----SLEA 189
Query: 250 EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+++PA L + + Y+ DIG + A
Sbjct: 190 DVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 88/361 (24%), Positives = 157/361 (43%), Gaps = 55/361 (15%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
++A+I + L PLTK R ++P GG YRLID P+SN +N+GI V+I +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 67 -ASLNRHLARAYNYGSGV-----TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
SL HL GSG DG + G + R F
Sbjct: 61 RQSLFDHL------GSGREWDLHRKRDGLFVFPYNDRDDLSEGGK---------RYFSQN 105
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
E + E ++L+ + +D ++ H ++G DIT+ + + AS++ +
Sbjct: 106 LEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+E S K G++L + +E E S+ +Y+ ++L+ LL
Sbjct: 166 DE----SGKVKSIGQNL------------NPEEEENI----SLDIYIVSTDLLIELLY-- 203
Query: 241 FPTANDFGSEIIPASANEQFLK-----AYLFNDYWEDIGTIRSFFEANLALTAHPPMFS- 294
G + LK AY + Y +I +++S+++AN+ L P F
Sbjct: 204 --ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLL-DPQNFQS 260
Query: 295 -FYDATKPIYTSRRNLPPSK-IDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHL 352
FY + PIYT ++ PP+ ++SK+ +S++++G I +E+S++ + + +
Sbjct: 261 LFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIEGK-VENSILSRGVHVGKDALI 319
Query: 353 K 353
K
Sbjct: 320 K 320
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 6e-21
Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 65/284 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
VIL GG+GTRL PLT+ K +P+ +I P+ + +GI + I+
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ L G G FG V++ A Q E G A AV + ED +
Sbjct: 62 KEL-----LGDGSDFG---VDITYAVQ--PEPD-----GLAHAV----LIAEDFVGD--D 100
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D ++ GD++++ + +++ + G+ TI +DD +G+++ + +G+V+ E
Sbjct: 101 DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIGLEE 158
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL--LNLLR--WRFPTAND 246
KPK E K +A G+Y + + + ++ R
Sbjct: 159 KPK---------------------EPKSNLAVTGLYFYDPSVFEAIKQIKPSAR------ 191
Query: 247 FG-SEIIPASANEQFLK------AYLFNDYWEDIGTIRSFFEAN 283
G EI A + +++ A L +W D GT S EAN
Sbjct: 192 -GELEI--TDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEAN 232
|
Length = 286 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 3e-18
Identities = 61/288 (21%), Positives = 109/288 (37%), Gaps = 83/288 (28%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
VI+ GG GTRL PLT+ KP + +GG +++ + I G YI Y +
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLA---- 55
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW-----------FQGTADAVRQFHW 119
+ Y FGD G ++ GTA A+
Sbjct: 56 -EMIEDY-------FGD---------------GSKFGVNISYVREDKPLGTAGALSLL-- 90
Query: 120 LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD----FG 175
K + L+++GD L ++Y + H+++ AD T+ R + +G
Sbjct: 91 -----PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCV------REYEVQVPYG 139
Query: 176 LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235
+++ GR+ S EKP ++ + G+Y+ + E+L
Sbjct: 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL 175
Query: 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283
+ + F D ++I + + + ++YW DIG + +AN
Sbjct: 176 IPKNEFFDMPDLIEKLI---KEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 4e-18
Identities = 67/288 (23%), Positives = 107/288 (37%), Gaps = 75/288 (26%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG GTRL PLT R K +P+ G +I + + +GI + I+ +
Sbjct: 3 GLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIK 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAV-RQFHWLFEDPRNKVI 129
L +G +T+ + G A AV +L ++P
Sbjct: 62 EALGDGSRFGVRITYI--------------LQEEP--LGLAHAVLAARDFLGDEPF---- 101
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
V+ L GD+L + V++ + AD +I ++D R FG+ +++ GR++
Sbjct: 102 --VVYL-GDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLV 155
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EKPK E +A +GVY F I D S
Sbjct: 156 EKPK---------------------EPPSNLALVGVYAFTPAIF------------DAIS 182
Query: 250 EIIPASANE-------QFL-------KAYLFNDYWEDIGTIRSFFEAN 283
+ P+ E Q+L + +W+D GT EAN
Sbjct: 183 RLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 66/280 (23%), Positives = 113/280 (40%), Gaps = 59/280 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL G GTR+ PLT+ R KP +P+ G L++ + ++GI+ + Y +
Sbjct: 3 AVILAAGKGTRMRPLTETRPKPMLPVAGK-PLLEHIIEALRDAGIDDFVFVVGYGKEKVR 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ G + + Q GTADA+ + V +
Sbjct: 62 EYFGDGSRGGVPIEY---------VVQEEQL-------GTADALGS-------AKEYVDD 98
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADIT-ISCLPMDDSRASDFGLMKINNEGRVLSFS 189
+ L+L+GD L D ++ R A+ I+ + +DD SD+G+++ + GRV
Sbjct: 99 EFLVLNGDVLLDSDLLE-----RLIRAEAPAIAVVEVDD--PSDYGVVETDG-GRVTGIV 150
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EKP + + G+YLF EI L + + ++
Sbjct: 151 EKP---------------------ENPPSNLINAGIYLFSPEIFELLEKTKLSPRGEY-- 187
Query: 250 EI---IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286
E+ + +E +KA + +W D+G +AN AL
Sbjct: 188 ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEAL 227
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 75/355 (21%), Positives = 127/355 (35%), Gaps = 78/355 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT R K +P+ ++ + + +GI + I+ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEI 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ + G G FG ++ Q G+ G A AV D +
Sbjct: 61 KEI-----VGEGERFG---AKITYIVQ-----GEP--LGLAHAVYTARDFLGD------D 99
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D ++ GD+L + FV++ + D I + D A FG+ + + R+L E
Sbjct: 100 DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVE 157
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK E +A +G+Y+F+ P +
Sbjct: 158 KPK---------------------EPPSNLAVVGLYMFR------------PLIFEAIKN 184
Query: 251 IIPASANE-------QFL-------KAYLFNDYWEDIGTIRSFFEANLAL--TAHPPMFS 294
I P+ E Q+L +W+D G +AN + +
Sbjct: 185 IKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQG 244
Query: 295 FYDATKPIYTSRRNLPP-SKIDDSKIVD-SIISHGSFITSSFIEH-SVVGIRSRI 346
D +K R + +KI +S I ++I I +S+I + +G I
Sbjct: 245 VDDESK--IRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVI 297
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 6e-11
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 36/211 (17%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG+GTRLYPLTK +K +P+ +I P+S + +GI ++ I++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 71 RHLARAYN-YGSGVTFGDGCVEVLAATQ-TPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L G G G + + A Q PG G A A + E+
Sbjct: 56 EDLPLFKELLGDGSDLG---IRITYAVQPKPG--------GLAQAF----IIGEEFIGD- 99
Query: 129 IEDVLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
+ V ++ GD+++ +Q T+ ++D +G+++ + GRVLS
Sbjct: 100 -DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPER--YGVVEFDENGRVLS 156
Query: 188 FSEKPKGKDLKAMAV------DTTVLGLSKQ 212
EKPK K AV D V ++KQ
Sbjct: 157 IEEKPK-KPKSNYAVTGLYFYDNDVFEIAKQ 186
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-11
Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 53/244 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG G+RLYPLT K +P+ +I P+ +G V ++ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
R++ EV GTAD++R K+ +
Sbjct: 62 STYLRSFPLNLKQKL----DEVTIVLDED--------MGTADSLRHIR-------KKIKK 102
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D L+LS D + + ++ V HR A +++ L + S + + S+
Sbjct: 103 DFLVLSCDLITDLPLIELVDLHRSHDA--SLTVL-LYPPPVS-------SEQKGGKGKSK 152
Query: 191 KPKGKDLKAMAVDTT---VLGLSKQEAEEKPYIASMG------------------VYLFK 229
K +D+ + +D +L ++ +E ++ VY+FK
Sbjct: 153 KADERDV--IGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFK 210
Query: 230 KEIL 233
+ +L
Sbjct: 211 RWVL 214
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 70/280 (25%), Positives = 109/280 (38%), Gaps = 62/280 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
A+IL GG GTRL PLT KP V + PM +G+ ++ + Y
Sbjct: 3 ALILVGGYGTRLRPLTLTVPKPLVEFC------NKPMIEHQIEALAKAGVKEIILAVNYR 56
Query: 66 SASLNRHLARAYN--YGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+ L + Y G +TF +E P GTA + L D
Sbjct: 57 PEDMVPFL-KEYEKKLGIKITFS---IE-----TEP--------LGTAGPLA----LARD 95
Query: 124 PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NE 182
E +L+ D + + + H++ GA+ TI ++D S +G++ + N
Sbjct: 96 LLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENT 153
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GR+ F EKPK V + + G+Y+ + L+ + R P
Sbjct: 154 GRIERFVEKPKVF------VGNKI---------------NAGIYILNPSV-LDRIPLR-P 190
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
T+ EI P A+E L AY +W DIG + F +
Sbjct: 191 TS--IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKG 228
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AV+L G G+R PLT K +P+ LID + +G+ +V+++ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
HL ++ + G A +R D R +
Sbjct: 62 EHLLKSKWSSLSSKMIVDVITSDLCESA----------GDALRLR-------DIRGLIRS 104
Query: 131 DVLILSGD 138
D L+LS D
Sbjct: 105 DFLLLSCD 112
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 6e-09
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 310 PPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
PP ++ +S++S G I+ +E+SV+ R+ + ++
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVE 44
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 62/277 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTR+ PLT R KP VP+ G LID + +GI ++ + T + + +
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIE 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQ-FHWLFEDPRNKVI 129
HL + +G +T D E+L T +++ L ++P
Sbjct: 61 AHLGDS-RFGLRITISDEPDELL---------------ETGGGIKKALPLLGDEP----- 99
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRAS----DFGLMKINNEGRV 185
L+++GD L+ D + H D + LP+ + DF L + +GR+
Sbjct: 100 --FLVVNGDILWDGDLAPLLLLHAWR-MDALLLLLPLVRNPGHNGVGDFSL---DADGRL 153
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
P+ + G+ + E+ + +F
Sbjct: 154 RRGGGGAVA-----------------------PFTFT-GIQILSPELFAGIPPGKFSLN- 188
Query: 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+ + L +++ W D+GT A
Sbjct: 189 ----PLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 41/203 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTR+ T R KP V IGG L + M + GIN I Y +
Sbjct: 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHI-MKIYSHHGINDFIICCGYKGYVIK 60
Query: 71 RHLARAYNYGSGVTF--GDGCVEVL---------------AATQTPGEAGKRWFQGTADA 113
+ A + + S VTF D +EV +TQT G +
Sbjct: 61 EYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKR--------- 111
Query: 114 VRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD 173
VR++ +D E GD + +D + HR+ G T++ +
Sbjct: 112 VREY---LDD------EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV----QPPGR 158
Query: 174 FGLMKINNEGRVLSFSEKPKGKD 196
FG + + E +V SF EKP G
Sbjct: 159 FGALDLEGE-QVTSFQEKPLGDG 180
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 75/301 (24%)
Query: 11 AVILGGGA--GTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSA 67
AVIL GG GTR PL+ KP P+ G +I + C + +V ++ Y +
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAG-KPMIHHHIEACAKVPDLKEVLLIGFYPES 59
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ-----GTADAVRQFH--WL 120
+ ++ A V R+ Q GTA + F L
Sbjct: 60 VFSDFISDAQQE-FNVPI-------------------RYLQEYKPLGTAGGLYHFRDQIL 99
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFG-LMKI 179
+P +L+ D + ++ H++ GA TI +AS++G +++
Sbjct: 100 AGNP-----SAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVED 154
Query: 180 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL------ 233
+ G VL + EKP+ V + + GVYLF EI
Sbjct: 155 PSTGEVLHYVEKPETF------VSD---------------LINCGVYLFSPEIFDTIKKA 193
Query: 234 LNLLRWRFPTANDFGSE-----------IIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+ +D E ++ A L Y +D+W I T S A
Sbjct: 194 FQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYA 253
Query: 283 N 283
N
Sbjct: 254 N 254
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G G+RL PLT+ R K + I G L++ + +GI+ + I+T Y +
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIE 59
Query: 71 RHLARAYN 78
L + N
Sbjct: 60 ELLKKYPN 67
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 37/189 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYR--LIDVPMSNCINSGINKVYILTQYNSASL 69
+IL GG+GTRLYP+T+ +K +PI Y +I P+S + +GI + I++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAV---RQFHWLFEDPRN 126
+ L G G +G V + A Q + G A A F + DP
Sbjct: 60 FQQL-----LGDGSQWG---VNLSYAVQPSPD-------GLAQAFIIGEDF--IGGDP-- 100
Query: 127 KVIEDVLILSGDHLYRMDYMDFVQ--NHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
L+L + Y D D ++ R+SGA + + D R +G+++ ++ GR
Sbjct: 101 ----SALVLGDNIFYGHDLSDLLKRAAARESGATV-FAYQVSDPER---YGVVEFDSNGR 152
Query: 185 VLSFSEKPK 193
+S EKP
Sbjct: 153 AISIEEKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 53/235 (22%), Positives = 83/235 (35%), Gaps = 60/235 (25%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
AVIL G GTR+ K P+ G PM G +++ ++ +
Sbjct: 1 AVILAAGKGTRMK---SDLPKVLHPLAG------KPMLEHVLDAARALGPDRIVVVVGHG 51
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ V F VL Q GT AV+Q
Sbjct: 52 -----AEQVKKALANPNVEF------VLQEEQ----------LGTGHAVKQA-LPALKDF 89
Query: 126 NKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
DVL+L GD L + + ++ HR++GAD+T+ ++D + +G + + G
Sbjct: 90 E---GDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED--PTGYGRIIRDGNG 144
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238
+VL E+ KD E E+ + G+Y F E L L
Sbjct: 145 KVLRIVEE---KDAT--------------EEEKAIREVNAGIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 61/297 (20%), Positives = 111/297 (37%), Gaps = 56/297 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVP-----MSNCINSGINKVYILTQYN 65
AVI G GTR P TK K +PI +D P + + +GI + I+T
Sbjct: 3 AVIPAAGLGTRFLPATKAIPKEMLPI------VDKPVIQYIVEEAVAAGIEDIIIVTGRG 56
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF--Q----GTADAV-RQFH 118
++ H R+Y + G ++L + + + Q G AV
Sbjct: 57 KRAIEDHFDRSYELEETLEK-KGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKP 115
Query: 119 WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK 178
++ ++P ++ D LI S + + + ++ + ++GA + I+ + S +G++K
Sbjct: 116 FIGDEPFAVLLGDDLIDSKEP--CLKQL--IEAYEKTGASV-IAVEEVPPEDVSKYGIVK 170
Query: 179 I----NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234
+ +V EKPK E +A +G Y+ +I
Sbjct: 171 GEKIDGDVFKVKGLVEKPK-------------------PEEAPSNLAIVGRYVLTPDI-F 210
Query: 235 NLLRWRFPTANDFGSEI-----IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286
++L G EI I E+ + AY+F D G + +A +
Sbjct: 211 DILE-NTKP--GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF 264
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T +K +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + L +G + + Q + D + Q + E+
Sbjct: 61 TPRFQQLLGDGSQWGLNLQYK--------------------VQPSPDGLAQAFIIGEEFI 100
Query: 126 NKVIEDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ +
Sbjct: 101 GG--DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQN 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAISLEEKP 164
|
Length = 292 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 43/164 (26%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAV--PIGGAYRLIDVPMSNCINSGINKVYILTQY 64
+++AVIL G GTR+ P V P+ G PM +++
Sbjct: 1 MSLSAVILAAGKGTRMK-----SDLPKVLHPVAG------KPMLE---------HVIDAA 40
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF-----QGTADAVRQFHW 119
+ + V G G +V A + + GT AV Q
Sbjct: 41 RALG-PDDIV--------VVVGHGAEQVREALAERDDV--EFVLQEEQLGTGHAVLQALP 89
Query: 120 LFEDPRNKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITI 161
D + DVL+L GD L + + + + H GA T+
Sbjct: 90 ALADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATV 130
|
Length = 460 |
| >gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGI 55
M + + AVI G GTR+ P TK K +P L+D P+ + CI +GI
Sbjct: 1 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLP------LVDKPLIQYVVNECIAAGI 54
Query: 56 NKVYILTQYNSASLNRHL 73
++ ++T + S+ H
Sbjct: 55 TEIVLVTHSSKNSIENHF 72
|
Length = 302 |
| >gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 59/295 (20%), Positives = 103/295 (34%), Gaps = 60/295 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
AVI G GTR P TK K +PI +D P+ + +GI + I+T
Sbjct: 3 AVIPAAGLGTRFLPATKAIPKEMLPI------VDKPLIQYVVEEAVEAGIEDILIVTGRG 56
Query: 66 SASLNRHLARAYNY-----GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAV---RQF 117
S+ H +Y + V + T ++ +G AV F
Sbjct: 57 KRSIEDHFDTSYELEHQLEKTNKEELLKEVRSIIPLATIFYVRQKEQKGLGHAVLCAEPF 116
Query: 118 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM 177
+ ++P ++ D + +S + + + + + + G I I+ + S +G++
Sbjct: 117 --VGDEPFAVILGDDICVSEEPVLK----QMIDLYEKYGCSI-IAVEEVPKEEVSKYGVI 169
Query: 178 KIN----NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPY-IASMGVYLFKKEI 232
+ EKPK EE P +A +G Y+ +I
Sbjct: 170 DGEGVEEGVYEIKDMVEKPK--------------------PEEAPSNLAIVGRYVLTPDI 209
Query: 233 LLNLLRWRFPTANDFGSEI-----IPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
LL T G EI + ++ + AY F D G+ + +A
Sbjct: 210 -FELLE---ETPPGKGGEIQLTDALRKLLKKERVYAYKFKGKRYDCGSKLGYIKA 260
|
Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGG 38
VIL GG GTRL T+ + KP V IGG
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIGG 28
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 40/136 (29%)
Query: 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ-----NHRQSGADITI 161
+ GT A+ +P++ E VLIL+GD M V+ ++ ADI +
Sbjct: 79 YPGTGGALMGI-----EPKH---ERVLILNGD-------MPLVEKDELEKLLENDADIVM 123
Query: 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIA 221
S + D +G + I N G+V E+ KD E E K
Sbjct: 124 SVFHLAD--PKGYGRVVIEN-GQVKKIVEQ---KDAN--------------EEELKIKSV 163
Query: 222 SMGVYLFKKEILLNLL 237
+ GVYLF +++L L
Sbjct: 164 NAGVYLFDRKLLEEYL 179
|
Length = 430 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
S+IVDS I G IT+S IE S VG + HL+
Sbjct: 296 SRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLR 332
|
Length = 458 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 378 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 100.0 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.97 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.96 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.96 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.95 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.94 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.93 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.92 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.92 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.9 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.9 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.9 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.85 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.82 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.71 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.71 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.69 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.66 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.65 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.64 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.64 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.63 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.62 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.6 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.58 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.55 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.52 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.49 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.46 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.45 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.44 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.42 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.4 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.4 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.38 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.36 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.36 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.35 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.35 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.31 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.31 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.29 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.28 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.27 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.27 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.26 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.18 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.18 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.17 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.16 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.15 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.13 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.11 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 99.11 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 99.08 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.07 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.06 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 99.03 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.02 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.98 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.96 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 98.94 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 98.93 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 98.9 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.88 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.87 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.84 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.83 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.81 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.8 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.79 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.78 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.78 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.7 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.67 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.66 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.65 | |
| PLN02296 | 269 | carbonate dehydratase | 98.63 | |
| PLN02472 | 246 | uncharacterized protein | 98.63 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.62 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.61 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.61 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.6 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.57 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.55 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.55 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 98.55 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.54 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.53 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.52 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.5 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.5 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.5 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.49 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.49 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.47 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.47 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.47 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.45 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.42 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.41 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.41 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.4 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.4 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.4 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.39 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.39 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.38 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.37 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.37 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.37 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.35 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.34 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 98.33 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.33 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.31 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.3 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.3 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.3 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.29 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.29 | |
| PLN02472 | 246 | uncharacterized protein | 98.29 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.28 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 98.28 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 98.27 | |
| PLN02296 | 269 | carbonate dehydratase | 98.26 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.25 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.24 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.23 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.23 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.21 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.21 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.21 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.2 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.18 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.18 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.18 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.17 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.17 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.16 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 98.16 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.14 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.13 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.13 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.13 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.12 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.11 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 98.09 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.08 | |
| PLN02357 | 360 | serine acetyltransferase | 98.08 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.07 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.04 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.02 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.02 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.01 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.0 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 97.99 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 97.98 | |
| PLN02739 | 355 | serine acetyltransferase | 97.98 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 97.94 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 97.94 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 97.94 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.92 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 97.87 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.84 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 97.81 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 97.76 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 97.74 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.71 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 97.71 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 97.6 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 97.59 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.58 | |
| PLN02694 | 294 | serine O-acetyltransferase | 97.53 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.51 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.48 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 97.47 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.42 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 97.41 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 97.39 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 97.37 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.33 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 97.3 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.27 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 97.25 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 97.25 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.24 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.17 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 97.16 | |
| PLN02357 | 360 | serine acetyltransferase | 97.13 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.1 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 97.09 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 97.04 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 97.04 | |
| PLN02739 | 355 | serine acetyltransferase | 97.02 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.96 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 96.9 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 96.83 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 96.82 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 96.78 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 96.69 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 96.29 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.23 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 95.94 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 95.9 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 95.61 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 95.25 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 94.91 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 94.65 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 94.65 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 94.42 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 94.19 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 93.89 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 92.01 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 91.83 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 88.88 | |
| PF04519 | 101 | Bactofilin: Polymer-forming cytoskeletal; InterPro | 88.71 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 87.02 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 84.67 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 83.1 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 82.86 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 82.82 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 80.53 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=460.84 Aligned_cols=341 Identities=42% Similarity=0.721 Sum_probs=300.1
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
++.+-|+|||||.|+||.|||..++||-+|++|||+||+++|.++.++|+++|.|++.|+...+.+|+...+++..+..
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~- 81 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK- 81 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999876554432211
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
...+.++++.+. +.++.||.||++|+++.+..+.+.. .+.+++++||++++.|+.+++++|.++++++|+++.+
T Consensus 82 -~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~~~---~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 82 -NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRRSD---PEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred -cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHhcC---CCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 235788887766 3456799999999999999987643 7999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC---
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~--- 242 (378)
++....+.||++..|++++|++|.|||..... ...++++|+|+|+.++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99888899999999999999999999987221 12378999999999999999886543
Q ss_pred CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCcee-eCceeee
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVD 321 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~~ 321 (378)
...+|+++++|.+++.+.+++|+++|||.||||.++|++||+++++..+.+.+++++|+|+++....||+++ .++.+.|
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 357899999999999999999999999999999999999999999988888899999999999999999999 6777888
Q ss_pred eEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 322 s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
|.|+.||+|.| .|+||+|+.|++|++++.|++|+||++++|+++|.+---+
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aI 347 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAI 347 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEE
Confidence 88888888876 8888888888888888888888888888888888876543
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-59 Score=447.70 Aligned_cols=368 Identities=71% Similarity=1.160 Sum_probs=298.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|+|||||||.|+||+|||.++||||+||+|+||||+|+|+++.++|+++|+|+++++.+++.+|+...|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999977999999999999999999999999999999999865534333333
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
....+.++...|.. .+..+++||+++++.++.++++....+.++|++++||++++.|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 22235555544432 1123468999999999887754211124799999999999999999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
++..++..||.+.+|++++|.++.|||.......++++.++|.+++.+....++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87555688999999988999999999976555566777777776665444445789999999999999777776544444
Q ss_pred chhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCceeeCceeeeeEE
Q 017030 246 DFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (378)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~s~I 324 (378)
++..++++.++.+ .++++|.++|||.|+++|++|++|+++++...+...++++++.+++.....+|+.+.++.+++|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 6778899999876 589999999999999999999999999998776666777777888877777888887788888888
Q ss_pred ecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCC-------------------CeEeeeeeeeeeeEe
Q 017030 325 SHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPL-------------------CRRIWKCSSLCSVIC 375 (378)
Q Consensus 325 g~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~-------------------~~~~~~~~~~~~~~~ 375 (378)
+++|.|+++.|.+|+|+++|+||+||+|.+||++.+ ++|+++|.+..+||.
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~ 388 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIID 388 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEec
Confidence 888888877888888888888888888888888662 268888877777764
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-58 Score=439.23 Aligned_cols=345 Identities=59% Similarity=1.021 Sum_probs=265.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++++|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++++|+.+.+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 458999999999999999999999999999999988999999999999999999999999999999997544221 11
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
....+.++...|.. ....+++||++|++.+++++++. ..++|+|++||++++.|+.+++++|.++++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~~---~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEW---DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 11223444433321 11223479999999999998631 13789999999999999999999999999999999987
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
.+...+..||++..|++++|..|.|||.......+.++.++|...+.+.....+++++|+|+|++++|.+++++. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 654446789999999889999999999865445566666777666666555567899999999999997777653 2334
Q ss_pred chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc-cCCCCccccCCCCcEEccCCCCCCceeeCceeeeeEE
Q 017030 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~s~I 324 (378)
++.+++++.++.+.++++|.++|||.|+|||++|++||++++ ...+...++.+.+++++.+.+.+|+.+.++.+++|+|
T Consensus 232 ~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~i 311 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESII 311 (429)
T ss_pred hhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEE
Confidence 567789999998899999999999999999999999999998 5455555666667777666666665555555555555
Q ss_pred ecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCC
Q 017030 325 SHGSFITSSFIEHSVVGIRSRINANVHLKVSPANP 359 (378)
Q Consensus 325 g~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~ 359 (378)
|++|.|.++.|.+|+||++|+||+||.|++|||++
T Consensus 312 g~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~ 346 (429)
T PRK02862 312 AEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMG 346 (429)
T ss_pred CCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEec
Confidence 55555544555555555555555555555555554
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=397.09 Aligned_cols=321 Identities=34% Similarity=0.476 Sum_probs=266.9
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+.|+|+||.||.||||+|||..+|||++|++|+ |||+|++++|.++|+++|+++++|+.+++..|+.+.| +..++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----~~~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----GKELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----hhccc
Confidence 789999999999999999999999999999999 9999999999999999999999999998888887765 34444
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
++++...|++ ++||++.+..+++++.... +.+|+|++||++++.|+.+++++|++++++.|++++++
T Consensus 83 ---Vei~~s~ete-------plgtaGpl~laR~~L~~~~---~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE-------PLGTAGPLALARDFLWVFE---DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC-------CCcccchHHHHHHHhhhcC---CCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 7788777765 2445544444444443210 24899999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEECC-CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 167 DDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
++ ++.||++..|+ .|+|.+|.|||+... ++.+++|+|+|++++|++++. .| .
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~~--~p--t 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRILL--RP--T 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhhh--cc--c
Confidence 88 89999999998 899999999998532 356789999999999988862 23 3
Q ss_pred chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCc--------------cccC------CCCcEEcc
Q 017030 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMF--------------SFYD------ATKPIYTS 305 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~--------------~~~~------~~~~i~~~ 305 (378)
+++.+++|.+++++++++|.++|||+|||+|.||+.+...+++..+.. .+.+ .++.|.++
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~ 282 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPN 282 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCC
Confidence 488999999999999999999999999999999999988887653211 1222 34555666
Q ss_pred CCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 306 RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
++||++++| +++.+++|.|-.+..++ ++.|+.|+++++++||.|++|++ |+||+|+.|.+.-.+++-
T Consensus 283 vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 283 VVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred ceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccc
Confidence 777777777 57778888888888888 78888889999999999999887 889999998887766654
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=427.73 Aligned_cols=344 Identities=34% Similarity=0.584 Sum_probs=256.8
Q ss_pred cccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|..+++.+|+...|.+. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc-
Confidence 4788999999999999999999999999999999878999999999999999999999999999999997544211 11
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEe
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~ 164 (378)
....+...+..+. .+..+++||++|++.+++++.+. ..++|+|++||++++.|+.+++++|.++++++|+++.
T Consensus 80 -~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 80 -LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred -CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 1111221111111 12234689999999999999641 0246999999999999999999999999999999988
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC---
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF--- 241 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~--- 241 (378)
+.+...+..||.+..|++|+|.+|.|||....... ....+.++++|+|+|++++|.+++++..
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 76544467899999998899999999986432100 0012368999999999999866666421
Q ss_pred CCCCchhcccccccccccceEEEEe------------cceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEc-----
Q 017030 242 PTANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT----- 304 (378)
Q Consensus 242 ~~~~~~~~~~l~~l~~~~~i~~~~~------------~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~----- 304 (378)
....++..++++.+++++++++|.+ +|||.||++|++|++||+++|+..+...++.+...+++
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNL 298 (407)
T ss_pred cccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCC
Confidence 1234566789999999889999976 59999999999999999999986554433333333332
Q ss_pred ----------------cCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeee
Q 017030 305 ----------------SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKC 367 (378)
Q Consensus 305 ----------------~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~ 367 (378)
++.|+++|.|++++|++|+||+||.|+ +|.|++|+|+++|+||++|.|.+|||+++++|+++|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 378 (407)
T PRK00844 299 PPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGA 378 (407)
T ss_pred CCceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCC
Confidence 344555566655666666666677666 666666666777777766777667776666666666
Q ss_pred eeee
Q 017030 368 SSLC 371 (378)
Q Consensus 368 ~~~~ 371 (378)
.+.+
T Consensus 379 ~i~~ 382 (407)
T PRK00844 379 TIGV 382 (407)
T ss_pred EECC
Confidence 6654
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=423.82 Aligned_cols=336 Identities=37% Similarity=0.604 Sum_probs=255.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+. .+|
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~------~~~ 74 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG------SPW 74 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC------Ccc
Confidence 57899999999999999999999999999999997899999999999999999999999999999998532 233
Q ss_pred CCc----eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEE
Q 017030 86 GDG----CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITI 161 (378)
Q Consensus 86 ~~~----~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti 161 (378)
+.. .+.+++..+.+ ..+.+++||++||+.+++++++. ..++|+|++||++++.|+.++++.|.++++++|+
T Consensus 75 ~~~~~~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~~---~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl 149 (380)
T PRK05293 75 DLDRINGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTI 149 (380)
T ss_pred cccCCCCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEE
Confidence 311 13444222221 12234689999999999998531 1368999999999999999999999998899998
Q ss_pred EEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
++...+...+..||.+..|++++|.++.|||.... ++++++|+|+|++++|.+++++..
T Consensus 150 ~~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~ 208 (380)
T PRK05293 150 AVIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDE 208 (380)
T ss_pred EEEEcchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHh
Confidence 88766544467899999988899999999986432 357899999999998877766532
Q ss_pred C---CCCchhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCcee-eC
Q 017030 242 P---TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DD 316 (378)
Q Consensus 242 ~---~~~~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~ 316 (378)
. ...++..++++.++++ .++++|.+++||.|+||+++|++|+++++...+...++++.+.+++.+.+.+|++| ++
T Consensus 209 ~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 288 (380)
T PRK05293 209 KNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAEN 288 (380)
T ss_pred hcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCC
Confidence 2 2235567889998875 57999999999999999999999999999887776677777777777777777777 45
Q ss_pred ceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+.|.+|+||+||.|+ +.+.+|+||++|+||++|+|++|+|+++++|+++|.+..|+|
T Consensus 289 ~~i~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii 345 (380)
T PRK05293 289 AKVKNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAII 345 (380)
T ss_pred CEEecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEE
Confidence 555555555555554 234455555555555555555555555555555555555544
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=421.27 Aligned_cols=343 Identities=35% Similarity=0.582 Sum_probs=254.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++++|||||||.||||+|+|.++||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.|.+.. .+.
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~~- 91 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EEL- 91 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cCC-
Confidence 679999999999999999999999999999999559999999999999999999999999999999975442100 011
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
...+.+++..+.. ..+.+++||++|++.++.++++. ..++|+|++||++++.|+.+++++|.++++++|+++.+.
T Consensus 92 ~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~~---~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~ 166 (425)
T PRK00725 92 GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEV 166 (425)
T ss_pred CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEec
Confidence 1234455433321 12234689999999999999631 136899999999999999999999999999999999877
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC---CC
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PT 243 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~---~~ 243 (378)
+...+..||++..|++++|.+|.|||..... +. ....++++++|+|+|++++|.+++++.. ..
T Consensus 167 ~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~ 232 (425)
T PRK00725 167 PREEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPNS 232 (425)
T ss_pred chhhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCc
Confidence 5445788999999988999999999864320 00 0012368999999999998876665432 12
Q ss_pred CCchhcccccccccccceEEEEec-----------ceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEc--------
Q 017030 244 ANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT-------- 304 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~-----------~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~-------- 304 (378)
..++..++++.+++++++++|.++ +||.|+|||++|++||++++...+...+++..+.+++
T Consensus 233 ~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~ 312 (425)
T PRK00725 233 SHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPA 312 (425)
T ss_pred cchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCC
Confidence 345667899999999999999885 6999999999999999999876544433333333333
Q ss_pred --------------cCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 305 --------------SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 305 --------------~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
++.|+++|.|+++.|++|+||+||.|+ +|.|++|+|+++|+||++|+|++|||+++++|+++|.+
T Consensus 313 ~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i 392 (425)
T PRK00725 313 KFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVI 392 (425)
T ss_pred eEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEE
Confidence 444555555555555666666666665 56666666666666666666666666666666666555
Q ss_pred e
Q 017030 370 L 370 (378)
Q Consensus 370 ~ 370 (378)
.
T Consensus 393 ~ 393 (425)
T PRK00725 393 G 393 (425)
T ss_pred C
Confidence 4
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=403.55 Aligned_cols=333 Identities=23% Similarity=0.371 Sum_probs=258.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChh-hHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (378)
+.|+|||||||+|+||+|||.++||||+||+||||||+|++++|.++|+++|+|+++|..+ ++++|+.+.. .|
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~------~~ 74 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGR------EW 74 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCC------CC
Confidence 4689999999999999999999999999999997899999999999999999999999887 9999986422 23
Q ss_pred CCce-----EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEE
Q 017030 86 GDGC-----VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADIT 160 (378)
Q Consensus 86 ~~~~-----i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~t 160 (378)
+... ..++ .++... ...|++++++.++++++.. ..++|+|++||++++.|+.+++++|+++++++|
T Consensus 75 ~~~~~~~~~~~~~--~~e~~~----l~tg~~~a~~~a~~~l~~~---~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~t 145 (369)
T TIGR02092 75 DLHRKRDGLFVFP--YNDRDD----LSEGGKRYFSQNLEFLKRS---TSEYTVVLNSHMVCNIDLKAVLKYHEETGKDIT 145 (369)
T ss_pred CcccccCcEEEEe--ccCCCC----cccChHHHHHHHHHHHHhC---CCCEEEEECCCEEEecCHHHHHHHHHHcCCCEE
Confidence 2211 1111 122111 1136777888888888421 137899999999999999999999999999999
Q ss_pred EEEeecCCCCCCcce-EEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 161 ISCLPMDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 161 i~~~~~~~~~~~~~g-~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
+++.+.+...+..|| .+..+++|++..+.+++.... ...+++|+|+|++++|.+++++
T Consensus 146 l~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~ 204 (369)
T TIGR02092 146 VVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYE 204 (369)
T ss_pred EEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHH
Confidence 999887633356674 456776778887754332211 1356899999999988667664
Q ss_pred hCCC-CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCcccc-CCCCcEEccCCCCCCcee-eC
Q 017030 240 RFPT-ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFY-DATKPIYTSRRNLPPSKI-DD 316 (378)
Q Consensus 240 ~~~~-~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~-~~~~~i~~~~~i~~~~~i-~~ 316 (378)
..+. ...+..+++++++.+.++++|.+++||.|+|||++|++|+++++++......+ .....++....+.+|++| ++
T Consensus 205 ~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~ 284 (369)
T TIGR02092 205 CIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAEN 284 (369)
T ss_pred HhhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCC
Confidence 3222 22344578888888889999999999999999999999999999875332222 223455555556688888 68
Q ss_pred ceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
+.|.+|+||+||.|+ +.|++|+||++|+||+||+|++|+|++++.|+++|.+..|++|.
T Consensus 285 ~~i~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~ 343 (369)
T TIGR02092 285 SKVENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDK 343 (369)
T ss_pred CEEEEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECC
Confidence 888999999999997 67889999999999999999999999999999999999988873
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-54 Score=402.33 Aligned_cols=311 Identities=28% Similarity=0.413 Sum_probs=256.1
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
.|+|||||||.||||+|+|.++||||+||+|+ |||+|+|++|.++|+++|+++++|..+++++|+.+.+ .++.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~------~~~~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE------GLGV 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc------ccCC
Confidence 48999999999999999999999999999999 9999999999999999999999999999999987642 2222
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
. +.++. +. .++||+++|+.+.+++. .++|++++||++++.|+.+++++|+++++.+|++..+..
T Consensus 74 ~-I~y~~--e~-------~~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 74 R-ITYVV--EK-------EPLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred c-eEEEe--cC-------CcCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 2 22222 11 14799999999999986 389999999999999999999999999888999998887
Q ss_pred CCCCCcceEEEECCC-CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 017030 168 DSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (378)
++ ..||.+..+++ ++|.+|.|||.... ..++++++|+|+|++++|+ .++. ....+
T Consensus 138 ~~--~~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 DP--SEFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred CC--CcCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 63 78999988744 59999999995311 1247899999999999997 3332 23456
Q ss_pred hhcccccccccccc-eEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCC--------CcEEccCCCCCCcee-eC
Q 017030 247 FGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDAT--------KPIYTSRRNLPPSKI-DD 316 (378)
Q Consensus 247 ~~~~~l~~l~~~~~-i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~--------~~i~~~~~i~~~~~i-~~ 316 (378)
|..++++.+++.+. +++|.++|||.||++|++|++|+..+++........... ..+.+.+.+++++.| .+
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~ 273 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPG 273 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCC
Confidence 66689999999887 999999999999999999999999998654222111000 344555666666666 45
Q ss_pred ceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 317 SKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 317 ~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.|. +|+||+||.|+ ++.|+||+|+++|+||+++.|.+|||+.+|+|+.
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 6665 69999999999 8999999999999999999999999999999986
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=387.83 Aligned_cols=342 Identities=45% Similarity=0.768 Sum_probs=252.5
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|.++||||+|++|+||||+|++++|.++|+++|+|++++..+++.+|+.+.+.+.. . . ...+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~-~-~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDG-F-I-DGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccC-c-c-CCCE
Confidence 69999999999999999999999999999679999999999999999999999999999999975442110 0 0 0124
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
++++..+.. ....+++||+++++.+..++++. ..++|++++||++++.++.++++.|.++++++|+++.+.+...
T Consensus 78 ~~~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQRE--SGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 444322221 12334579999999999988531 1368999999999999999999999988888899888765444
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC---CCCch
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~ 247 (378)
+..||++..|++++|.++.|||......... ...+++++|+|+|++++|.+++++... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIPGM--------------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCccccccc--------------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 6789999998888999999998543210000 011378999999999998666665321 23355
Q ss_pred hcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEcc-CCCCCCcee-eCceeeeeEEe
Q 017030 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIIS 325 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~-~~i~~~~~i-~~~~i~~s~Ig 325 (378)
..++++.+++++++++|.++++|.||+|+++|++|+++++++.+....+.....+++. ..+.+++++ +++.+.+|+||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 6789999999899999999999999999999999999999875443333334444332 233455555 34466666667
Q ss_pred cCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 326 HGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 326 ~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+||.|+++.|.+|+||++|+||++|+|.+|+|++++.|+.+|.+..|++
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~iv 347 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAII 347 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEE
Confidence 7777764366666677777777667776677776666666666666655
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=359.68 Aligned_cols=314 Identities=22% Similarity=0.297 Sum_probs=228.5
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeec-ChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|++++++ ..+++.+|+.+. ..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~------~~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG------ERFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc------cccCce
Confidence 689999999999999999999999999999 999999999999999999999998 888899888542 233322
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
. .++. +. .+.||+++++.++++++ .++|++++||++++.++.+++++|.++++++|+++.+.++
T Consensus 74 ~-~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 I-TYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred E-EEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 2 2221 21 13699999999999885 3789999999999999999999999999999999988765
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (378)
+..||.+..+++++|.++.|||.... +.++++|+|+|++.+++ .++...+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 56799988876678999999986432 35789999999997764 45543321 122
Q ss_pred hhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCCCC-cc------------ccCCCCcEEccCCCCCCc
Q 017030 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM-FS------------FYDATKPIYTSRRNLPPS 312 (378)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~-~~------------~~~~~~~i~~~~~i~~~~ 312 (378)
...++++.++++ .++++|.+++||.||+||+||++|++.++++... .. .+.+++.| .++.|.+++
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~ 272 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGRVVVGEGAKI-VNSVIRGPA 272 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCCcCCCCEEcCCEEECCCCEE-eCCEEECCc
Confidence 235778888765 4799999999999999999999999999975321 10 11122222 233333334
Q ss_pred ee-eCceeeee------EEecCcEEcceEEeeceEcCCCEECCC-CEEeeeeeCCCCeEeeeeeeee
Q 017030 313 KI-DDSKIVDS------IISHGSFITSSFIEHSVVGIRSRINAN-VHLKVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 313 ~i-~~~~i~~s------~Ig~~~~I~~~~i~~SiI~~~~~Ig~~-~~i~~sIi~~~~~~~~~~~~~~ 371 (378)
.| ++|.|.+| +||+||.|+++.|.+|+|+++++|+.+ +.+.+|+++++++|+.++.++.
T Consensus 273 ~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 273 VIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred EECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCccccc
Confidence 33 23444333 333333333333456666666666666 3666666666666666666653
|
Alternate name: dTDP-D-glucose synthase |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=331.29 Aligned_cols=330 Identities=25% Similarity=0.344 Sum_probs=274.3
Q ss_pred cceeEEEEcCC--CCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhhHHHHHHhhccCCCCc
Q 017030 7 RTVAAVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (378)
Q Consensus 7 ~~~~avIla~G--~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~ 83 (378)
++.+||||.|| .||||+||+.+.||||+||+|+ |||+|.|+++.+ .|..+|+++.-|..+.+.+++..-. .
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~-----~ 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ-----Q 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH-----h
Confidence 46799999999 6999999999999999999999 999999999998 6999999999888887877775321 1
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+|.. .++++.. ..++||+++|...++.+-.. ..+.+.|+++|+-+++++.++++.|+..+..+|++.
T Consensus 75 e~~~-pvrYL~E---------~~plGtaGgLyhFrdqIl~g---~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 75 EFKV-PVRYLRE---------DNPLGTAGGLYHFRDQILAG---SPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred hccc-chhhhcc---------CCCCCcccceeehhhHHhcC---CCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 1211 1333322 23589999999999887432 158899999999999999999999999999999999
Q ss_pred eecCCCCCCcceEEEEC-CCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh---h
Q 017030 164 LPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---W 239 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~---~ 239 (378)
+++.....++||.+..| ..|+|+++.|||...- ++.+++|+|+|++++|+.+-+ +
T Consensus 142 tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q 200 (407)
T KOG1460|consen 142 TKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQ 200 (407)
T ss_pred EEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHH
Confidence 99988778999999988 5799999999998643 478899999999998864321 1
Q ss_pred h---C----------CCC---CchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC-----------CC
Q 017030 240 R---F----------PTA---NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-----------PM 292 (378)
Q Consensus 240 ~---~----------~~~---~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~-----------~~ 292 (378)
. . +.. ..+..|+|+.++.++++++|...++|..|.|+-+-+.|++.+|++. ++
T Consensus 201 ~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pg 280 (407)
T KOG1460|consen 201 RQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPG 280 (407)
T ss_pred HHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCC
Confidence 0 0 001 1234678888999999999999999999999999999999888742 11
Q ss_pred c-------cccCCCCcEEccCCCCCCcee-------eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee---
Q 017030 293 F-------SFYDATKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV--- 354 (378)
Q Consensus 293 ~-------~~~~~~~~i~~~~~i~~~~~i-------~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~--- 354 (378)
. .+++|++++++.++|+|++.| +++++++|+|-++|.|. ++.|-|||||++++||.+++++.
T Consensus 281 t~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 281 TQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred CCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccc
Confidence 1 267788888999999998888 47888999999999999 99999999999999999999987
Q ss_pred -----------eeeCCCCeEeeeeeeeeeeEee
Q 017030 355 -----------SPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 355 -----------sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
+|+|..+.++|.|.++.|++=-
T Consensus 361 ~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 361 EPSPNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred ccCCCCCcceeEEecccceecceeEEeeeeEec
Confidence 7899999999999999998743
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=322.73 Aligned_cols=342 Identities=18% Similarity=0.243 Sum_probs=250.8
Q ss_pred cccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecC-hhhHHHHHHhhccCCCCc
Q 017030 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~-~~~i~~~l~~~~~~~~~~ 83 (378)
.+.++|||++|||.||||-.++...|||||||+|+ |||+|+|.+|.++|+++|+|++.+. ...++..+...+.+. .
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~--~ 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLK--K 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccc--c
Confidence 46789999999999999999999999999999999 9999999999999999999999763 445777775543221 1
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+ ...+++-...+. ..||+++|+.....+. .+|||+++||.+++.++..++++++..++...+++
T Consensus 83 ~--~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli 146 (433)
T KOG1462|consen 83 R--PDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLI 146 (433)
T ss_pred c--ccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHh
Confidence 1 001232222222 2699999999998886 37999999999999999999999997766544444
Q ss_pred eecCC---------CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHH
Q 017030 164 LPMDD---------SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (378)
Q Consensus 164 ~~~~~---------~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 234 (378)
..... +....+.++..++++.-.-|..... .....+.+..+++|.+|+-.. .+.+.++++|+|+.++++
T Consensus 147 ~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d 224 (433)
T KOG1462|consen 147 GNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVID 224 (433)
T ss_pred ccccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHH
Confidence 33211 0112233444444443344433322 222457788888888887654 457899999999999996
Q ss_pred HHHhhhCCCCCchhcccccccccc---------------------------------cceEEEEe--cceEEecCCHHHH
Q 017030 235 NLLRWRFPTANDFGSEIIPASANE---------------------------------QFLKAYLF--NDYWEDIGTIRSF 279 (378)
Q Consensus 235 ~~l~~~~~~~~~~~~~~l~~l~~~---------------------------------~~i~~~~~--~~~~~~i~t~~~~ 279 (378)
++.+. +...+|..+++|.++++ .++++|+. +.-+.+++|.-.|
T Consensus 225 -~l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y 302 (433)
T KOG1462|consen 225 -LLSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSY 302 (433)
T ss_pred -HHhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHH
Confidence 44442 33455666777776642 23455544 3468899999999
Q ss_pred HHHHH--hcccCCCCccccC----CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCE
Q 017030 280 FEANL--ALTAHPPMFSFYD----ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVH 351 (378)
Q Consensus 280 ~~a~~--~~l~~~~~~~~~~----~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~ 351 (378)
+++|+ .+.+-.+...+.. ..+.+..++.+++++.| +++.|+.|+||+||.|| ++.|.||+|++|++||+|+.
T Consensus 303 ~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~ 382 (433)
T KOG1462|consen 303 MEINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVN 382 (433)
T ss_pred HhhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcc
Confidence 99994 3332222221111 12445668889999999 69999999999999999 89999999999999999999
Q ss_pred EeeeeeCCCCeEeeeeee
Q 017030 352 LKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 352 i~~sIi~~~~~~~~~~~~ 369 (378)
|+|||||++|+|++||-+
T Consensus 383 IensIIg~gA~Ig~gs~L 400 (433)
T KOG1462|consen 383 IENSIIGMGAQIGSGSKL 400 (433)
T ss_pred eecceecccceecCCCee
Confidence 999999999999999865
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=304.57 Aligned_cols=233 Identities=26% Similarity=0.476 Sum_probs=198.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecCh-hhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|+|||||||.||||+|+|...||.|+||.+| |||+|.++.|..+|+++|.|+++++. ..++++ +++|.+|+.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l------lGdgs~~gv 73 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL------LGDGSDFGV 73 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh------hcCccccCc
Confidence 7999999999999999999999999999999 99999999999999999999998744 445444 478888885
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
.. -+..|++ +.|-|+|+..+.++++ +++|+++.||.++..++.++++.+.+++.++++++.+++
T Consensus 74 ~i---tY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 74 DI---TYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred ce---EEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 53 3334553 4699999999999997 499999999998877999999999998999999999999
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC-c
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN-D 246 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~-~ 246 (378)
+ |++||++++|++++|+++.|||..++ |+++-+|+|+|++++|+ +++...|+.+ +
T Consensus 138 d--P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGE 193 (286)
T COG1209 138 D--PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGE 193 (286)
T ss_pred C--cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCc
Confidence 7 89999999998999999999999764 58999999999999995 6666555422 2
Q ss_pred h-hcccccccccccc-eEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 247 F-GSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 247 ~-~~~~l~~l~~~~~-i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
+ ..|.++.+++++. +......|+|.|.||++||++|++.++.
T Consensus 194 lEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 194 LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred eEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 2 2567788887665 5555677899999999999999998875
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=327.31 Aligned_cols=345 Identities=16% Similarity=0.227 Sum_probs=263.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHh-hccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLAR-AYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~-~~~~~~~~~ 84 (378)
...+|||+||.-+-+||+|+|...|+.|||++|. |||+|+|++|.++|+.+|+|+++.+..++.+|+++ .|.. .
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~----~ 96 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYL----P 96 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccc----c
Confidence 3679999999999999999999999999999999 99999999999999999999999899999999987 3311 1
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHH-----cCCcE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQ-----SGADI 159 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~-----~~~~~ 159 (378)
++...+.+... .+...|+++|...+. ....++|++++||++.+.||.+++++|+. +++.|
T Consensus 97 ~~~~v~ti~s~----------~~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iM 161 (673)
T KOG1461|consen 97 MSFIVVTICSG----------ESRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIM 161 (673)
T ss_pred ccceEEEEcCC----------CcCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceE
Confidence 22112233221 124688888876432 34479999999999999999999999964 46789
Q ss_pred EEEEeecCCCCCCcceEEEEC-CCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh
Q 017030 160 TISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
||++.+........--.+.+| .+.++..+.+-... ...++++.++|..++ +.....++.+++|-+|+++++. ++.
T Consensus 162 Tmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~ 237 (673)
T KOG1461|consen 162 TMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFT 237 (673)
T ss_pred EEEEeccccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhh
Confidence 999988742212333444555 45788888762211 134566667776553 3445678999999999999995 555
Q ss_pred hhCCC--CCchhcccccccccccceEEEEecc--eEEecCCHHHHHHHHHhcccCC-----CCccccC------------
Q 017030 239 WRFPT--ANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHP-----PMFSFYD------------ 297 (378)
Q Consensus 239 ~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~--~~~~i~t~~~~~~a~~~~l~~~-----~~~~~~~------------ 297 (378)
+.++. ..+|.+.+|.+-+-+.+|+++.... |..++.+++.|...++++++|. |...+.+
T Consensus 238 dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IY 317 (673)
T KOG1461|consen 238 DNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIY 317 (673)
T ss_pred hcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccc
Confidence 55443 4456666666666688999998875 8999999999999999999884 2221111
Q ss_pred --CC------CcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeee
Q 017030 298 --AT------KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKC 367 (378)
Q Consensus 298 --~~------~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~ 367 (378)
++ +.+..++.|+.++.| .++.|.||+||+||+|| ++.|++|.||.||+||+||+|++|||+++|+|++||
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~ 397 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGA 397 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCc
Confidence 12 222334445555555 48899999999999999 999999999999999999999999999999999999
Q ss_pred ee-eeeeE
Q 017030 368 SS-LCSVI 374 (378)
Q Consensus 368 ~~-~~~~~ 374 (378)
++ +++|+
T Consensus 398 ~l~~g~vl 405 (673)
T KOG1461|consen 398 ILKPGSVL 405 (673)
T ss_pred ccCCCcEE
Confidence 99 66665
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=333.77 Aligned_cols=318 Identities=20% Similarity=0.221 Sum_probs=245.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++++|||||||.|+||++ ..||+|+|++|+ |||+|+++++.++|++++++++++..+++.+++.+.. .
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~------~- 69 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG------D- 69 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC------c-
Confidence 4578999999999999984 689999999999 9999999999999999999999999888888875311 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-E-EecCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~-~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+.++. +.. .+||+++++.+++++++. .++|++++||. + ...++.++++.|.+.+++++++.
T Consensus 70 ----i~~~~--~~~-------~~Gt~~al~~a~~~l~~~----~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 70 ----VSFAL--QEE-------QLGTGHAVACAAPALDGF----SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ----eEEEe--cCC-------CCCHHHHHHHHHHHhhcc----CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 22222 111 369999999999998631 37899999998 3 35668999999988888888888
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.++ +..||.+.+|++++|.++.|||.....+ ..++++++|+|+|++++|.++++...+.
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 77755 4679999898889999999987432110 0135789999999999876666543221
Q ss_pred ---CCchhccccccccccc-ceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccccCCCC-cEEccCCCCC
Q 017030 244 ---ANDFGSEIIPASANEQ-FLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATK-PIYTSRRNLP 310 (378)
Q Consensus 244 ---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~~~~~~-~i~~~~~i~~ 310 (378)
...+..++++.+++++ ++.+|.+++| |.+++||++|++|++.++... ....+++++. .+...+.|++
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~ 273 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGR 273 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcC
Confidence 1233467888888764 7999999987 999999999999988665432 1222455543 3556666777
Q ss_pred Ccee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 311 ~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++.| .++.|. +++||+||.|+ ++.|.+|+||++|+|++++.|.+|+|++++.|+.+|++.
T Consensus 274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~ 336 (459)
T PRK14355 274 DTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLR 336 (459)
T ss_pred CCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEEC
Confidence 7777 566664 68889999998 888889999999999999999888888888888777664
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=305.61 Aligned_cols=316 Identities=22% Similarity=0.245 Sum_probs=240.9
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.+||||||.||||+ +++||.|.|++|+ ||++|+++.+...+.+++.++++|..+++++.+.+.. ...|
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~v~~- 71 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----DVEF- 71 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----CceE-
Confidence 35789999999999999 8899999999999 9999999999999999999999999999998885421 1111
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
++ |.+ ++||++|++++++++.+. .++++||++||+ ++..+ ++++++.|...++.+|++..
T Consensus 72 -----v~---Q~e-------qlGTgHAV~~a~~~l~~~---~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 72 -----VL---QEE-------QLGTGHAVLQALPALADD---YDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred -----EE---ecc-------cCChHHHHHhhhhhhhcC---CCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 22 332 479999999999999331 145799999999 66666 88899999999999999999
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
..++ |..||.+..+++|+|..+.|..+....+ . .-..+|+|+|+|+.+.|.++|.+.. ..
T Consensus 134 ~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~ee---------------k--~I~eiNtGiy~f~~~~L~~~L~~l~-nn 193 (460)
T COG1207 134 ELDD--PTGYGRIVRDGNGEVTAIVEEKDASEEE---------------K--QIKEINTGIYAFDGAALLRALPKLS-NN 193 (460)
T ss_pred EcCC--CCCcceEEEcCCCcEEEEEEcCCCCHHH---------------h--cCcEEeeeEEEEcHHHHHHHHHHhc-cc
Confidence 9887 8999999999899999999987764321 1 1246899999999998888888763 34
Q ss_pred Cchhccccccccc-----ccceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccccCC-------CCcEEc
Q 017030 245 NDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA-------TKPIYT 304 (378)
Q Consensus 245 ~~~~~~~l~~l~~-----~~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~~~~-------~~~i~~ 304 (378)
+...+++|+++++ +.++.++..+.+ ..-+|+..++.++++.+.++. .++.+++| +..+..
T Consensus 194 NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~ 273 (460)
T COG1207 194 NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGR 273 (460)
T ss_pred cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECC
Confidence 5556778888764 467888888755 578999999999998887663 23333333 222223
Q ss_pred ------------cCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeee
Q 017030 305 ------------SRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 305 ------------~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~ 369 (378)
++.|+.++.| .++.|+||.||+||.|. .+.+++|.|+++|.||+.++|+. |.|+++++||.=|-+
T Consensus 274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv 353 (460)
T COG1207 274 DVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV 353 (460)
T ss_pred ceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE
Confidence 3333334444 46778888888888888 48888888888776666666664 555555555544433
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=322.52 Aligned_cols=322 Identities=21% Similarity=0.234 Sum_probs=223.2
Q ss_pred CccccccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC
Q 017030 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (378)
Q Consensus 1 ~~~~~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~ 80 (378)
|.... ++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++++++...
T Consensus 1 ~~~~~-~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---- 71 (481)
T PRK14358 1 MTEQT-RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS---- 71 (481)
T ss_pred CCccc-CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----
Confidence 34444 589999999999999986 489999999999 999999999999999999999999888888877421
Q ss_pred CCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCc
Q 017030 81 SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGAD 158 (378)
Q Consensus 81 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~ 158 (378)
+ +.++.. . .+.||+++++.+++++... .++|++++||. ++ ..++.+++++|.+++++
T Consensus 72 -~-------i~~v~~--~-------~~~Gt~~al~~~~~~l~~~----~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 72 -G-------VAFARQ--E-------QQLGTGDAFLSGASALTEG----DADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred -C-------cEEecC--C-------CcCCcHHHHHHHHHHhhCC----CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 1 233321 1 1369999999999888521 35799999998 33 45599999999999999
Q ss_pred EEEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh
Q 017030 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
+|+++.+.++ +..||.+..|++++|.+|.|||...... ..++++++|+|+|+++++ ++++
T Consensus 131 ~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~ 190 (481)
T PRK14358 131 MTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELAR 190 (481)
T ss_pred EEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHH
Confidence 9999888775 5679999999889999999998743210 012468999999997653 2333
Q ss_pred hhCC---CCCchhccccccccccc-ceEEEEecceEEecCCHHHHHHHHHh-cccCC--------------CCcc-----
Q 017030 239 WRFP---TANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP--------------PMFS----- 294 (378)
Q Consensus 239 ~~~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~~~~~a~~~-~l~~~--------------~~~~----- 294 (378)
...+ ....+..|+++.+++++ ++++|.+.++|..++.-.+|..++++ +++.. +...
T Consensus 191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (481)
T PRK14358 191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT 270 (481)
T ss_pred hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence 3211 11223457888888765 69999999988888777766555543 33221 1110
Q ss_pred -------ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEe
Q 017030 295 -------FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRI 364 (378)
Q Consensus 295 -------~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~ 364 (378)
.+.+.+.|.+.+.|++++.| .++.|.+|+||++|.|+ ++.|.+++||+++.||+++.|. +++|++++.|+
T Consensus 271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig 350 (481)
T PRK14358 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIG 350 (481)
T ss_pred cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEEC
Confidence 11112222223333444444 35566667777777776 6666667777777777776665 46666666666
Q ss_pred eeeeeeee
Q 017030 365 WKCSSLCS 372 (378)
Q Consensus 365 ~~~~~~~~ 372 (378)
+.+.+..+
T Consensus 351 ~~~~i~~~ 358 (481)
T PRK14358 351 NFVETKNA 358 (481)
T ss_pred CCEEECCc
Confidence 65554433
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=320.80 Aligned_cols=314 Identities=16% Similarity=0.199 Sum_probs=221.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
..++.|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|++++++++++..+++.+++.... .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~---- 70 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---P---- 70 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---C----
Confidence 3568999999999999986 589999999999 9999999999999999999999988888887775311 0
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~ 163 (378)
. +.++. +. .+.||+++++.++.++... ..++|++++||. ++. .++.++++.|++.+++++++.
T Consensus 71 --~-~~~~~--~~-------~~~Gt~~si~~al~~l~~~---~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 71 --E-VDIAV--QD-------EQPGTGHAVQCALEALPAD---FDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred --c-cEEEe--CC-------CCCCcHHHHHHHHHHhccC---CCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1 22221 11 1369999999999988531 146799999998 444 458999999988888888887
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.++ +..||.+..+++++|.++.|||.....+ ....++++|+|+|++++|.+++++..+.
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 77665 6779998888889999999998753211 0124689999999999997776654322
Q ss_pred ---CCchhccccccccccc-ceEEEEecceEEecCCHHHH------HHHHHhcccCC--CCcc-----------------
Q 017030 244 ---ANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSF------FEANLALTAHP--PMFS----------------- 294 (378)
Q Consensus 244 ---~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~~~------~~a~~~~l~~~--~~~~----------------- 294 (378)
...+..|+++++++.+ ++++|.+++||.|++++++| ..+++.+++.. ....
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGR 276 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECC
Confidence 1233468888888765 79999999999999999888 55555544331 1111
Q ss_pred --ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEe
Q 017030 295 --FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-VSPANPLCRRI 364 (378)
Q Consensus 295 --~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~ 364 (378)
.+++.+.+...+.|+++|.| .++.|.+|+||+||.|+++.+.+|+|+++++||+++.+. +++|+++++++
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig 350 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLG 350 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEEC
Confidence 12222333334444444444 356666666666666665556666666666666666664 45555444444
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=300.48 Aligned_cols=244 Identities=18% Similarity=0.270 Sum_probs=189.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccC------
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY------ 79 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~------ 79 (378)
|..|+|||||||.||||+|+|.++||||+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+...+.+
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4579999999999999999999999999999999 999999999999999999999999999999998643211
Q ss_pred ----------CCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe-------
Q 017030 80 ----------GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (378)
Q Consensus 80 ----------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~------- 142 (378)
..+..++.. +.++ .|. .++||++|++.++++++ +++|+|++||.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-i~~~--~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVT-IMNV--RQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCCce-EEEe--eCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 001112211 2222 232 25799999999999986 37899999999987
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE----CCCCC---EEEEEecCCccchhcccccchhcccccccc
Q 017030 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI----NNEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (378)
Q Consensus 143 -~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~----d~~~~---v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (378)
.++.+++++|.++++.++++....++ +..||++.. |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~~~~~~~~~--~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQVLAKRMPGD--LSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEEEEEEcCCC--CccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 48899999998777766444333323 688999998 44564 5899999864321
Q ss_pred ccCcceeeeeEEEEeHHHHHHHHhhhCCCC-C-chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 215 EEKPYIASMGVYLFKKEILLNLLRWRFPTA-N-DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 215 ~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-~-~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
..++++++|+|+|++++|+ .++...+.. . ....++++.++++++++++.++|+|+|+|+|++|++||..+.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1246899999999999986 445432221 1 123478889999999999999999999999999999998863
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=297.05 Aligned_cols=246 Identities=18% Similarity=0.273 Sum_probs=192.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~----- 80 (378)
|..|+|||||||.||||+|+|..+||||+||+|| |||+|+++++.++|+++|+|++++..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999996433110
Q ss_pred -----------CCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe-------
Q 017030 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (378)
Q Consensus 81 -----------~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~------- 142 (378)
....++ +.+....|.+ ++||++|++.+++++. +++|+|++||.+++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 1222223322 4799999999999985 37899999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEEC----CCC---CEEEEEecCCccchhcccccchhcccccccc
Q 017030 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (378)
Q Consensus 143 -~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~---~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (378)
.|+.+++++|.+.+++++++....+ .+..||.+..| ++| +|.++.|||.....
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 4799999999888877554443333 36889999986 355 78999999864310
Q ss_pred ccCcceeeeeEEEEeHHHHHHHHhhhCCC--CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhc-ccC
Q 017030 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL-TAH 289 (378)
Q Consensus 215 ~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~-l~~ 289 (378)
..++++++|+|+|++++|..+. ...+. ......++++.+++++++.+|.++|+|+|+|+|++|++|+.++ ++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~-~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELE-RTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHH-hCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 1246899999999999987553 32222 1123357888899999999999999999999999999999998 544
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=315.79 Aligned_cols=317 Identities=18% Similarity=0.210 Sum_probs=230.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|+|||||||.|+||+ ..+||+|+|++|+ |||+|+++.+.++|++++++++++..+++++++... +
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-----~--- 70 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-----P--- 70 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-----C---
Confidence 557999999999999998 4689999999999 999999999999999999999998888888776421 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+.++. +.. ..||+++++.++.++.+ .++|++++||. +.+.++.++++.|.+.+ +++++
T Consensus 71 ----~~~i~--~~~-------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 71 ----LNWVL--QAE-------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ----cEEEE--CCC-------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 22221 111 25999999999988753 47899999998 44566899998886544 45566
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.++ +..||.+.. ++++|.+|.|||.....+ ..++++++|+|+|+++.|.++++...+.
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 66554 567999755 578999999998642210 0135789999999999887777654321
Q ss_pred ---CCchhcccccccccc-cceEEEE------ecce--EEecCCHHHHHHHHH--hccc-C----CCC------------
Q 017030 244 ---ANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANL--ALTA-H----PPM------------ 292 (378)
Q Consensus 244 ---~~~~~~~~l~~l~~~-~~i~~~~------~~~~--~~~i~t~~~~~~a~~--~~l~-~----~~~------------ 292 (378)
...+..|+++.++++ .++.+|. +.|| |.|++++++|+++++ .++. . .+.
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 223456888888876 5788886 4566 678999999999984 2221 1 111
Q ss_pred ccccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 293 FSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 293 ~~~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
-..+.+.+.+...+.|++++.| .++.|++|+||++|.|+ ++.+.+|+|+++++||+++.|. ++.++++++|++++.|
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 1133344555555666666666 56777788888888888 7888888888888888888886 6777777777777666
Q ss_pred eeeeE
Q 017030 370 LCSVI 374 (378)
Q Consensus 370 ~~~~~ 374 (378)
..+++
T Consensus 351 ~~~~i 355 (456)
T PRK09451 351 KKARL 355 (456)
T ss_pred eceee
Confidence 54443
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=312.50 Aligned_cols=319 Identities=17% Similarity=0.183 Sum_probs=227.4
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
.+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++++|++++..+.+.+++...
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----------- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----------- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----------
Confidence 4899999999999997 5789999999999 999999999999999999999998888777665321
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
.++++.... +.||+++++.+++++++.. .+++++++||+ ++. .++.++++.|. +++++++..+
T Consensus 70 -~~~~v~~~~---------~~Gt~~al~~a~~~l~~~~---~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 70 -DARFVLQEQ---------QLGTGHALQCAWPSLTAAG---LDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred -CceEEEcCC---------CCCcHHHHHHHHHHHhhcC---CCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 122322111 3699999999999886321 47899999999 454 44888888775 6678888887
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC---
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~--- 242 (378)
.++ +..||.+.. ++|+|..+.||++...... ...+.++++|+|+|++++|..+++....
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 765 567998877 5789999999886431100 0013568999999999998766654322
Q ss_pred CCCchhcccccccccc-cceEEEEecc--eEEecCCHHHHHHHHHhcccCCC------C-------ccccCC------CC
Q 017030 243 TANDFGSEIIPASANE-QFLKAYLFND--YWEDIGTIRSFFEANLALTAHPP------M-------FSFYDA------TK 300 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~-~~i~~~~~~~--~~~~i~t~~~~~~a~~~~l~~~~------~-------~~~~~~------~~ 300 (378)
....+..++++.++.. .++.++.+.+ +|.+|+||+||.+|+..+..+.. + ...+++ +.
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 1122335677776654 4799998865 57999999999999877764421 0 111122 22
Q ss_pred cEE------ccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 301 PIY------TSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 301 ~i~------~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
.+. +.+.|++++.| .++.|.+|+||+||.|+ ++.|.+|+||++|+||++++|. +++|+++++|+++|.+..
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~ 356 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK 356 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeee
Confidence 222 23344455555 46677778888888887 7778888888888888888886 577777777777776655
Q ss_pred eeE
Q 017030 372 SVI 374 (378)
Q Consensus 372 ~~~ 374 (378)
|++
T Consensus 357 ~~i 359 (456)
T PRK14356 357 AVL 359 (456)
T ss_pred eEe
Confidence 554
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=313.09 Aligned_cols=310 Identities=20% Similarity=0.219 Sum_probs=214.9
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++++|+++++.+.+.+++.+. +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~---------~-- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR---------D-- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC---------C--
Confidence 7899999999999996 689999999999 999999999999999999999999888888877531 1
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++.... +.|++++++.++++++. .++|++++||. ++. .++.++++.|.+. .+++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 22221111 25899999999998853 36899999998 444 4588999988664 467777666
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--- 243 (378)
++ +..|+.+..|++++|..+.|||....... ..+.+++|+|+|++++|.++++...+.
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~~-----------------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQK-----------------AIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHHh-----------------cCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 43 56699988888899999999876432100 124679999999999976666653221
Q ss_pred CCchhcccccccccc-cceEEEEecce--EEecCCHHHHHHHHHhcccCCC------Cc-------------------cc
Q 017030 244 ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHPP------MF-------------------SF 295 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~~------~~-------------------~~ 295 (378)
...+..++++.++.. .++++|.++++ |.++++|++|.+++..+..+.. +. ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 112335777888766 47999999988 8999999999888765543210 00 11
Q ss_pred cCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
+++.+.+...+.|++++.| .++.|.+|+||+||.|+ ++.|.+|+|+++|+||+++.|. +++|+++++|+++|.+
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i 346 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVET 346 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceee
Confidence 2222233333344444444 34555666666666666 5666666666666666666665 3555555555554433
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=289.88 Aligned_cols=239 Identities=37% Similarity=0.654 Sum_probs=190.1
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEe-ecChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~-~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
||||||||.||||+|+|.+.||||+|++|++|||+|+|+++.++|++++++++ ++..+++.+|++... .++..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~------~~~~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY------KFGVK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG------GGTEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc------ccccc
Confidence 69999999999999999999999999999989999999999999999965555 577888999986532 23211
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCc--EEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGAD--ITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~--~ti~~~~~ 166 (378)
+.++. |.. ..||++||+.+..++... ...++|++++||++++.++.++++.|.+++++ +++...+.
T Consensus 75 -i~~i~--~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 75 -IEYIV--QPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp -EEEEE--ESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred -ceeee--ccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 33332 222 259999999999999751 00134999999999999999999999999884 45555544
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh--hhCCCC
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTA 244 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~--~~~~~~ 244 (378)
. .++.||++..|++|+|.++.|||..... ++++++|+|+|++++|..+++ +.....
T Consensus 143 ~--~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~ 200 (248)
T PF00483_consen 143 E--DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARG 200 (248)
T ss_dssp S--GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTS
T ss_pred c--ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchh
Confidence 4 3788999999988999999999986531 368999999999999976654 212234
Q ss_pred Cchhcccccccccccc-eEEEEecc--eEEecCCHHHHHHHHHhccc
Q 017030 245 NDFGSEIIPASANEQF-LKAYLFND--YWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 245 ~~~~~~~l~~l~~~~~-i~~~~~~~--~~~~i~t~~~~~~a~~~~l~ 288 (378)
..+..++++.+++++. +.++.+++ +|+|||||++|++|++++++
T Consensus 201 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 201 EDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 5566789999988774 56778888 79999999999999999875
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=284.28 Aligned_cols=232 Identities=26% Similarity=0.423 Sum_probs=193.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|++||||||.|+||+|+|.+.||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.. ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~-----~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYE-----KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhccc-----ccCC--
Confidence 7899999999999999999999999999999 9999999999999999999999999999999886321 1122
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+.++...+.. ..|++++++.++.++... .++|++++||++++.++.+++++|+++++++|+++.+.++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIETE-------PLGTAGPLALARDLLGDD----DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCCC-------CCccHHHHHHHHHHhccC----CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 2232222221 369999999999988531 3689999999999999999999999999999999988764
Q ss_pred CCCCcceEEEECC-CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCch
Q 017030 169 SRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (378)
Q Consensus 169 ~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (378)
+..||++..|+ +++|.++.|||.... ++++++|+|+|++++|+.+ .. ...++
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 56899999987 789999999986432 3578999999999999654 32 12234
Q ss_pred hcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
..++++.+++++++.+|.++|+|.||+||++|++|++.+|
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=288.47 Aligned_cols=235 Identities=26% Similarity=0.407 Sum_probs=191.3
Q ss_pred EEEEcCC--CCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 11 AVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 11 avIla~G--~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
||||||| .||||+|+|..+||||+||+|+ |||+|+++++.+ +|+++|+|++++..+++.+|+.+.. ..++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~-----~~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-----QEFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc-----cccCc
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999986431 11121
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
. +.++ .+.. ..||+++++.++++++.. ..++|+|++||++++.|+.+++++|+++++++|+++.+.+
T Consensus 75 ~-i~~~--~~~~-------~~Gt~~al~~a~~~l~~~---~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 75 P-IRYL--QEYK-------PLGTAGGLYHFRDQILAG---NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred e-EEEe--cCCc-------cCCcHHHHHHHHHHhhcc---CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 1 2222 2221 369999999999988531 1368999999999999999999999999999999998875
Q ss_pred CCCCCcceEEEEC-CCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---
Q 017030 168 DSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (378)
Q Consensus 168 ~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--- 243 (378)
...+..||++..| ++|+|.++.|||.... ++++++|+|+|++++|+.+ ....+.
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhcccccc
Confidence 4446789999988 6789999999986432 3578999999999998544 332221
Q ss_pred ---------------CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 244 ---------------ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 244 ---------------~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
..++..++++.+++++++++|.++|||.||+|+++|.+||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1234468899999989999999999999999999999999864
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=304.75 Aligned_cols=304 Identities=20% Similarity=0.263 Sum_probs=223.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|+++|||||||.|+||+| .+||+|+|++|+ |||+|+++.|.++ +++|+|++++..+++.+++.+.+ .+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~~---- 68 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---PG---- 68 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---Cc----
Confidence 458899999999999986 699999999999 9999999999986 78999999999999998886432 11
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++..... .+.||+++++.+.. . .++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 69 ---v~~~~~~~~-------~~~gt~~al~~~~~---~-----~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 69 ---VIFHTQDLE-------NYPGTGGALMGIEP---K-----HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred ---eEEEEecCc-------cCCCcHHHHhhccc---C-----CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 233321111 13689999976421 1 48999999998332 2244555666677888888877
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--- 243 (378)
++ +..||.+..+ +|++.++.|++...... ...++.++|+|+|++++|.++++.....
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 5568988775 68999999987542200 0125689999999999997765543211
Q ss_pred CCchhcccccccccc-cceEEEEec-ceEEecCCHHHHHHHHHhcccCCC-------------CccccCCCCcEEccCCC
Q 017030 244 ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSRRN 308 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~~~-------------~~~~~~~~~~i~~~~~i 308 (378)
...+..++++.+++. .++.++.++ ++|.||++|+||.+|+..++.+.. ...++.++..+...+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 122335667777665 679999887 589999999999999876654321 11234455666667777
Q ss_pred CCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCe
Q 017030 309 LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCR 362 (378)
Q Consensus 309 ~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~ 362 (378)
++++.| .++.+++|+||++|.|+++.|+||+||++++|++++.|.+|+|++++.
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~ 323 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVE 323 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEE
Confidence 888888 678888888888888887788888888888888888888888877773
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=301.54 Aligned_cols=321 Identities=18% Similarity=0.201 Sum_probs=223.8
Q ss_pred cccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
+|+++.|||||||.|+||++ ..||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++.+..
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~------- 70 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA------- 70 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC-------
Confidence 46779999999999999983 589999999999 9999999999999999999999998888888774311
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.. +.++. +. ...|++++++.++.+++.. .++|++++||. +++.+ +..+++ |.+.++++++.
T Consensus 71 --~~-~~~~~--~~-------~~~G~~~sl~~a~~~l~~~----~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 71 --PD-AEIFV--QK-------ERLGTAHAVLAAREALAGG----YGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred --CC-ceEEE--cC-------CCCCcHHHHHHHHHHHhcc----CCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 01 11111 11 1359999999999888521 37899999998 55554 777777 44566778887
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
..+..+ +..||.+.. ++++|.++.|||...... ..+.++++|+|+|+++.|.+++++...
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777654 567888877 568999999998643210 012468999999999877667665422
Q ss_pred C---CCchhcccccccccc-cceEEEEec-ceEEecCCHHHHHHHHHhcccC-------------CCCccc------cCC
Q 017030 243 T---ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAH-------------PPMFSF------YDA 298 (378)
Q Consensus 243 ~---~~~~~~~~l~~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~-------------~~~~~~------~~~ 298 (378)
. ...+..+.++.+++. .+++++..+ ++|.+|+||+||..|+..+..+ .+...+ +++
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 122345677787765 469999886 5699999999999998644221 011111 222
Q ss_pred CCcEEccCCCCCCcee-------eCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 299 TKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-------~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+..+.+.+.|++++.| .++.|.+|+||++|+|| ++.|. +|+||++|+||+++.|.+++|+++++++..+.+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i 353 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYI 353 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEE
Confidence 2233333333333333 24455678888888888 77776 788888888888888888888877665544444
Q ss_pred eeee
Q 017030 370 LCSV 373 (378)
Q Consensus 370 ~~~~ 373 (378)
..++
T Consensus 354 ~~~~ 357 (446)
T PRK14353 354 GDAT 357 (446)
T ss_pred cCcE
Confidence 3333
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=282.81 Aligned_cols=235 Identities=24% Similarity=0.420 Sum_probs=187.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEee-cChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~-~~~~~i~~~l~~~~~~~~~~~ 84 (378)
|..|+|||||||.||||+|+|..+||||+||+|| |||+|+|+.|..+|+++|+|++. +..+.+++++. ++..
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~------~g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc------Cccc
Confidence 4579999999999999999999999999999999 99999999999999999998764 45566777763 3445
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-EecCHHHHHHHHHHcCCcEEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
|+... .+. .|.. +.|+++|+..+.+++.+ ++++++.||.+ ++.|+.++++.|.++++++|+++
T Consensus 74 ~g~~i-~y~--~q~~-------~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLNL-QYK--VQPS-------PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCcee-EEE--ECCC-------CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 65432 222 2322 46999999999999853 56889999975 57889999999988888999998
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.++++ ++.||++..|++|+|+++.|||..+. ++++++|+|+|++++++ .++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCC
Confidence 88765 67899999998899999999986432 46899999999999885 44443232
Q ss_pred C-Cc-hhcccccccccccceEE-EEecce-EEecCCHHHHHHHHHhcc
Q 017030 244 A-ND-FGSEIIPASANEQFLKA-YLFNDY-WEDIGTIRSFFEANLALT 287 (378)
Q Consensus 244 ~-~~-~~~~~l~~l~~~~~i~~-~~~~~~-~~~i~t~~~~~~a~~~~l 287 (378)
. .+ ...++++.+++++++.+ +..+|+ |.|+|||++|.+|+..+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 1 11 12577888888777644 456785 999999999999998775
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=302.38 Aligned_cols=319 Identities=22% Similarity=0.241 Sum_probs=230.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|+++|||||||.|+||+ ..+||+|+|++|+ |||+|+++++.++|++++++++++..+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 46799999999999998 3689999999999 999999999999999999999999888888776321
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++. +.. ..|++++++.+++++++. .++|++++||. ++ ..++.++++.|.+.++++|+++.
T Consensus 67 ---~~~~~--~~~-------~~g~~~al~~a~~~l~~~----~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFAL--QEE-------QLGTGHAVMQAEEFLADK----EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEE--cCC-------CCCHHHHHHHHHHHhccc----CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 11211 111 268999999999988531 26799999997 44 45589999999888888888887
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~- 243 (378)
..++ +..|+.+..|++++|.++.|||...... ...+++++|+|+|+++.|.+.+++..+.
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 7654 5668888888889999999987532100 0135689999999998665666543221
Q ss_pred --CCchhcccccccccc-cceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccccC---------------
Q 017030 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYD--------------- 297 (378)
Q Consensus 244 --~~~~~~~~l~~l~~~-~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~~~--------------- 297 (378)
......++++.+++. .++++|.++++ |.++++++||..|+..+..+. +...+++
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 112234667777654 57999999876 567779999998876443211 1111122
Q ss_pred ----CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 298 ----ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 298 ----~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
+.+.+...+.|++++.| .++.|.+|+||+||.|+++.+.+|+||++|+||++|.|. +++|+++++|+.+|.+..
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 351 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKK 351 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEee
Confidence 22223334444555555 467777888888888886777888888888888888888 688888888877777655
Q ss_pred eeE
Q 017030 372 SVI 374 (378)
Q Consensus 372 ~~~ 374 (378)
+++
T Consensus 352 ~~i 354 (458)
T PRK14354 352 STI 354 (458)
T ss_pred eEE
Confidence 443
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=299.18 Aligned_cols=308 Identities=20% Similarity=0.219 Sum_probs=222.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+++++.+.+ ++|+|++++..+.+.+++.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 7899999999999984 689999999999 99999999999875 89999999888778777632 1
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++. +.. .+|++++++.+++++++ .++|++++||. +...++.++++.|.++++++|+++.+.
T Consensus 64 -~~~~~--~~~-------~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFL--QEE-------QLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEe--cCC-------CCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 11221 111 36999999999998853 47999999997 445668999999998899999999887
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (378)
++ +..||.+..+ ++++ .+.||+...... ...+++++|+|+|++++|.+++++..+..
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 65 6779998887 6788 788876432110 01257899999999999877666432211
Q ss_pred -CchhcccccccccccceEEEEecce--EEecCCHHHHHHHHHhcccC------CCCcc-------ccC-----------
Q 017030 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAH------PPMFS-------FYD----------- 297 (378)
Q Consensus 245 -~~~~~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~------~~~~~-------~~~----------- 297 (378)
..+..|+++.+ .++.+|.+.+| |.+++++++|..+...+... ..... +++
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 11223555555 35888888888 66777999998876554221 01111 222
Q ss_pred -CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 298 -ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 298 -~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
+.+.|.+++.|++++.| .++.|.+|+||+||.|.++.+.+|+|+++++||++++|.. ++|+++++|+++|.+..+
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 342 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKS 342 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeecc
Confidence 22333334455555555 4677778888888888767788888888888888888854 888888888887766443
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=275.24 Aligned_cols=231 Identities=25% Similarity=0.398 Sum_probs=185.4
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecC-hhhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|++++++. .+++.+|+.. +..|+.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~------~~~~~~ 73 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD------GSDLGI 73 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc------ccccCc
Confidence 7899999999999999999999999999999 9999999999999999999988654 4678888753 233432
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEE-ecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~-~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
. +....+.. ..|++++++.++++++ .++|++++||.++ +.++.+++++|.++++++|+++.+.
T Consensus 74 ~---i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 74 R---ITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred e---EEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2 22222221 3699999999999885 3789999999854 6679999999988888999998887
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-CC
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AN 245 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~ 245 (378)
++ ++.||.+..|++|+|.++.|||.... +.++++|+|+|++++|+ .+++..+. ..
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCC
Confidence 65 56799999998899999999986432 25789999999999884 55543221 11
Q ss_pred c-hhcccccccccccceEEEEec--ceEEecCCHHHHHHHHHhc
Q 017030 246 D-FGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 246 ~-~~~~~l~~l~~~~~i~~~~~~--~~~~~i~t~~~~~~a~~~~ 286 (378)
+ ...++++.+++++++.++.++ |+|.|||||++|.+|++.+
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 1 224788888888888888776 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=280.07 Aligned_cols=231 Identities=25% Similarity=0.434 Sum_probs=185.8
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEee-cChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+|||||||.||||+|+|..+||+|+||+|| |||+|+|+.+..+|+++|+|+++ +..+.+++++. ++..|+.+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg------~g~~~g~~ 73 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQWGVN 73 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc------cccccCce
Confidence 589999999999999999999999999999 99999999999999999998874 56667777763 34456543
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
. .+..|.. +.||++|+..+.++++ .++++++.||. +++.++.++++.|.++++++|+++.+++
T Consensus 74 i---~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 74 L---SYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred E---EEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2 2222322 4799999999999996 37889999997 4577899999999888889999998887
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-CCc
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AND 246 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~~ 246 (378)
+ ++.||++..|++|+|.++.|||..+. ++++++|+|+|++++++ .++...+. ..+
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 5 67899999998899999999986432 36789999999999875 55543332 122
Q ss_pred -hhcccccccccccceEEEEe-cce-EEecCCHHHHHHHHHhcc
Q 017030 247 -FGSEIIPASANEQFLKAYLF-NDY-WEDIGTIRSFFEANLALT 287 (378)
Q Consensus 247 -~~~~~l~~l~~~~~i~~~~~-~~~-~~~i~t~~~~~~a~~~~l 287 (378)
...++++.+++++++.++.+ .|+ |.|+|||++|++|+..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 22478888888877766665 576 999999999999998664
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=274.68 Aligned_cols=234 Identities=26% Similarity=0.365 Sum_probs=189.4
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC--C
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--D 87 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~--~ 87 (378)
+|||||||.|+||+|+|.++||||+||+|+ |||+|+++.+.++|+++|+|++++..+++.+++.+....+.+..+. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 8999999999999999999999999999999986422111111110 0
Q ss_pred c------------eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHc
Q 017030 88 G------------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (378)
Q Consensus 88 ~------------~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~ 155 (378)
. .+.+. .+ ..++||+++++.++++++ .++|++++||++++.|+.+++++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLV--DT-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeee--ec-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 01111 11 124799999999999885 379999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHH
Q 017030 156 GADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235 (378)
Q Consensus 156 ~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~ 235 (378)
++++|++..+ + +..||.+..|+ ++|+++.|||... +.++++|+|+|++++| +
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9999987653 2 56799999975 6999999998532 2478999999999998 4
Q ss_pred HHhhhCCCCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 236 ~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
.++.. ..++..++++.++.++++++|.++|||.||+||++|.+++..+.+..
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 55432 23556789999999999999999999999999999999999887653
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=274.87 Aligned_cols=245 Identities=22% Similarity=0.335 Sum_probs=190.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCC---
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG--- 82 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--- 82 (378)
.+-|+|||||||.|+||+|+|..+||+|+|++|+ |+|+|+++++.++|+++|+|++++..+++.+|+...+.++..
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 3459999999999999999999999999999999 999999999999999999999999999999998643211100
Q ss_pred ---cccCCc-------eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe--------cC
Q 017030 83 ---VTFGDG-------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MD 144 (378)
Q Consensus 83 ---~~~~~~-------~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~--------~d 144 (378)
..+..+ ...+.+..|. .+.||++|++.+..++. +++|+|++||.+++ .+
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccccc
Confidence 000000 0111111222 24799999999998875 37899999999875 68
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECC-------CCCEEEEEecCCccchhcccccchhccccccccccC
Q 017030 145 YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK 217 (378)
Q Consensus 145 ~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (378)
+.+++++|.+++++ |+++.+.++ +..||++..++ +++|.++.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999888876 677777754 67899998763 3579999999974321 2
Q ss_pred cceeeeeEEEEeHHHHHHHHhhhCCC--CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 218 PYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 218 ~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
++++++|+|+|++++| +.++...+. ...+..++++.+++++++.+|.++|+|.|||||++|++|+.++-
T Consensus 210 s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 3679999999999998 456553222 22334688899998889999999999999999999999999874
|
|
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=272.11 Aligned_cols=242 Identities=23% Similarity=0.299 Sum_probs=186.1
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----CCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (378)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7899999999999999999999999999999 9999999999999999999999999999999985432110 000
Q ss_pred c----------cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec---CHHHHHH
Q 017030 84 T----------FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQ 150 (378)
Q Consensus 84 ~----------~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~---d~~~~l~ 150 (378)
. .+. .+.+. .+. .+.||+++++.++.+++ .++|++++||.++.. ++.++++
T Consensus 80 ~~~~~~~~~~~~~~-~i~~~--~~~-------~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~ 143 (267)
T cd02541 80 TDLLEEVRIISDLA-NIHYV--RQK-------EPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIE 143 (267)
T ss_pred HHHhhhhhcccCCc-eEEEE--EcC-------CCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHH
Confidence 0 011 12121 121 23699999999999885 378999999997764 4899999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcceEEEECC----CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEE
Q 017030 151 NHRQSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 151 ~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
.|.+++++ ++++.+.+...+..||.+..|+ .++|.++.|||..... .+.++++|+|
T Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giy 203 (267)
T cd02541 144 AYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRY 203 (267)
T ss_pred HHHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEE
Confidence 99877765 4555555543467899999885 2489999999864211 2357899999
Q ss_pred EEeHHHHHHHHhhhCC-CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 227 LFKKEILLNLLRWRFP-TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 227 ~~~~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
+|++++|..+.+.... ....+..++++.+++++++++|.++|||.||+||++|++||+++.
T Consensus 204 i~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 204 VLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred EcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999998655331111 112233577888988889999999999999999999999999874
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=289.77 Aligned_cols=312 Identities=19% Similarity=0.247 Sum_probs=225.5
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+.+++|++++..+++.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6799999999999985 689999999999 9999999999999999999999988888888774310
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
.+.++.... +.|++++++.+++++++. .+++++++||. +...++.++++.|.+.+++++++..+.
T Consensus 67 ~i~~v~~~~---------~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQP---------QLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeCC---------cCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 133332111 358999999998888531 36799999998 344568999999998888888877776
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (378)
++ +..||.+..|++|+|.++.|||.....+ ..++++++|+|+|+++.|.+++++..+..
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 54 5669999998889999999998643210 12367899999999998877776543321
Q ss_pred -CchhcccccccccccceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccc-------------cC-----
Q 017030 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSF-------------YD----- 297 (378)
Q Consensus 245 -~~~~~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~-------------~~----- 297 (378)
..+..+.++.+. .+.++...++ |..+++++++..+...+.... +...+ ++
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 112233444442 3566666665 456999999988876543221 11111 11
Q ss_pred -CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 298 -ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 298 -~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
+.+.+...+.+++++.| .++.|.+|+||+||+|+++.+.+|+|+++|.||++|.|. +++|+++++|+.++.+.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~ 347 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK 347 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe
Confidence 22334445556666666 567778888888888876677788888888888888886 57777777777777654
|
|
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=268.10 Aligned_cols=243 Identities=22% Similarity=0.332 Sum_probs=190.5
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC--Cc
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--DG 88 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~--~~ 88 (378)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++.+.++|+++|+|+++|..+++.+|+.+....+....+. ..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 8999999999999999999999999999999987643111111111 00
Q ss_pred eEEEeccccCC---CcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 89 CVEVLAATQTP---GEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 89 ~i~i~~~~~~~---~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
.+.+....... ....+....||+++++.+++++.+ .++|++++||++++.++.++++.|.+.++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 11222110000 000011136899999999998852 2789999999999999999999999999999987763
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
....||.+..|++|+|..+.|||... +.++++|+|+|++++++.+ ++. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cc
Confidence 25678999999889999999998643 1468999999999998543 332 33
Q ss_pred chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccC
Q 017030 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~ 289 (378)
++..++++.+++++++++|.++|+|.+|+|+++|.+|+..+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 45568999999999999999999999999999999999887554
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=274.92 Aligned_cols=240 Identities=20% Similarity=0.262 Sum_probs=182.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----CCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (378)
|+|||||||.||||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred ccCC-------ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec---CHHHHHHHHH
Q 017030 84 TFGD-------GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (378)
Q Consensus 84 ~~~~-------~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~---d~~~~l~~h~ 153 (378)
.|.. ....+....+. .+.||+++++.+++++. .++|++++||.++.. ++.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 0000 00111111121 24799999999999884 478999999998764 6999999999
Q ss_pred HcCCcEEEEEeecCCCCCCcceEEEECC----CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEe
Q 017030 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (378)
Q Consensus 154 ~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~ 229 (378)
++++++ +++...+...+..||.+..|. +++|+.+.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888875 555555443467899998862 3699999999853211 2357899999999
Q ss_pred HHHHHHHHhhhCCCC-CchhcccccccccccceEEEEecceEEecCCHHHHHHH
Q 017030 230 KEILLNLLRWRFPTA-NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 230 ~~~l~~~l~~~~~~~-~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
+++|..+.+...... .....++++.+++++++++|.++|||.|||||++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 999876543221111 12234778888888899999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=262.30 Aligned_cols=219 Identities=21% Similarity=0.334 Sum_probs=179.9
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCce
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (378)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+. .|+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-------~~~~-- 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS-------RFGL-- 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc-------cCCc--
Confidence 589999999999999999999999999999 999999999999999999999999999999998641 2322
Q ss_pred EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHH--HcCCcEEEEEeecC
Q 017030 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHR--QSGADITISCLPMD 167 (378)
Q Consensus 90 i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~--~~~~~~ti~~~~~~ 167 (378)
.+....+.. ...||+++++.++.+++ .++|++++||++++.++.++++.|. +.++.+|+...+.+
T Consensus 71 -~i~~~~~~~------~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 71 -RITISDEPD------ELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred -eEEEecCCC------cccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 222222210 13699999999999885 3789999999999999999999998 46667777766654
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCch
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (378)
. ...||.+..|++|+|..+.|+|.. +++++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 567899999888999999888742 367999999999998755321 122
Q ss_pred hcccccccccccceEEEEecceEEecCCHHHHHHH
Q 017030 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
..++++.+++++++.+|.++|+|.||+||++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 35788888988899999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=259.80 Aligned_cols=232 Identities=26% Similarity=0.406 Sum_probs=188.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||+|+|...||+|+||+|+ |||+|+++++.++|+++|+|++++..+.+.+++.+.. .|+..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~------~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------RFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh------hcCCe
Confidence 7999999999999999999999999999999 9999999999999999999999998888998885432 23322
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+.++. +. .+.|++++++.++.++. .+++++++||.+++.++.++++.|.++++++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 22322 21 13699999999998885 3789999999999999999999999999999999888764
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (378)
+..||.+..|+ ++|.++.|||.... +.++++|+|+|++++++.+ +...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 56789888874 59999999986432 2468999999999998644 332221 112
Q ss_pred hhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
...++++.++++ .++.++.++++|.+|+||+||.+|++.+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 235778888865 469999999999999999999999999875
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=252.38 Aligned_cols=222 Identities=28% Similarity=0.487 Sum_probs=182.9
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++...+ .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~------~~~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY------RGGIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc------ccCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888886422 12221 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.+... +. ..|++++++.+++++. .++|++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 73 ~~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 12111 11 3699999999998884 4899999999999889999999998888889988888754
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhcc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (378)
...|+.+..|++|+|..+.|||.... ++++++|+|+|++++|..+.+. ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 46789888988899999999876431 3578999999999998654221 2344567
Q ss_pred cccccccccceEEEEecceEEecCCHHHHHHH
Q 017030 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 251 ~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
+++.++.++++.+|.++++|.||+|++||..|
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 88888887799999999999999999999987
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=247.40 Aligned_cols=217 Identities=33% Similarity=0.592 Sum_probs=180.1
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+++...+ .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~------~~~~~-i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS------KFGVN-I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh------hcCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888875432 12221 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++. +.. +.|++++++.++.++. .++|++++||++++.++.++++.|.++++++|+++.+.+.
T Consensus 73 ~~~~--~~~-------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (217)
T cd04181 73 EYVV--QEE-------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED-- 135 (217)
T ss_pred EEEe--CCC-------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2222 211 2599999999998883 4899999999999999999999999999999999988763
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhcc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (378)
+..||.+..|++++|.++.|||.... +.++++|+|+|++++++ .++........+..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHH
Confidence 67899999998899999999986532 25789999999999884 555432223455678
Q ss_pred cccccccccceEEEEecceEEecC
Q 017030 251 IIPASANEQFLKAYLFNDYWEDIG 274 (378)
Q Consensus 251 ~l~~l~~~~~i~~~~~~~~~~~i~ 274 (378)
+++.++.+.++++|.++|+|.|||
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 899999889999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=246.13 Aligned_cols=219 Identities=25% Similarity=0.473 Sum_probs=175.9
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++..+++++|+.+. ..|+.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~------~~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG------SKFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc------cccCcc-E
Confidence 69999999999999999999999999999 999999999999999999999999888888887542 223322 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++. +. .+.||++++..+.+.. .++|++++||.+++.++.++++.|.+.++++++++.+...
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2221 11 1368999998776544 3789999999999999999999999988899988877543
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhcc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (378)
...||.+..|+ ++|.++.|||... .++++|+|+|++++++.+ +. .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 45699998875 8999999987532 467999999999998643 32 11112356
Q ss_pred cccccccc-cceEEEEecceEEecCCHHHHHHHH
Q 017030 251 IIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283 (378)
Q Consensus 251 ~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~ 283 (378)
+++.++++ .++.+|+++++|.+++||+||.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 78888765 4699999999999999999999885
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=241.40 Aligned_cols=249 Identities=22% Similarity=0.320 Sum_probs=200.1
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCC-----
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGS----- 81 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~----- 81 (378)
+-++|||+|||.||||.|.|...||-||||.+| |+|+|+++.+.++|+++|++++++....+.+|++..+.+..
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKR 81 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHh
Confidence 457999999999999999999999999999999 99999999999999999999999999999999886653321
Q ss_pred Cc-cc----C--CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC---HHHHHHH
Q 017030 82 GV-TF----G--DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFVQN 151 (378)
Q Consensus 82 ~~-~~----~--~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d---~~~~l~~ 151 (378)
++ .. . ...+.+.+..|.. ++|.|+|+++|+.++. +++|.|+.+|.++..+ +.++++.
T Consensus 82 ~K~~~L~~v~~i~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~~ 148 (291)
T COG1210 82 GKRELLEEVRSIPPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIEL 148 (291)
T ss_pred CHHHHHHHHHhcccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHHH
Confidence 11 00 0 0123333334443 5899999999999998 4899999999988753 7889998
Q ss_pred HHHcCCcEEEEEeecCCCCCCcceEEE----ECCC-CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEE
Q 017030 152 HRQSGADITISCLPMDDSRASDFGLMK----INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 152 h~~~~~~~ti~~~~~~~~~~~~~g~v~----~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
+.+.+.. .+.+.+++....+.||++. .+.+ .+|.++.|||....+ .|+++-.|-|
T Consensus 149 ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRY 208 (291)
T COG1210 149 YEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRY 208 (291)
T ss_pred HHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeeee
Confidence 8887764 5777788766688999997 3332 489999999977653 4689999999
Q ss_pred EEeHHHHHHHHhhhCCCCC--chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 227 LFKKEILLNLLRWRFPTAN--DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 227 ~~~~~~l~~~l~~~~~~~~--~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
+|+|++|+ +|++..+... -...|.+..+++...+++|.++|..+|+|++..|.+|+.++..++
T Consensus 209 il~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 209 VLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred ecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 99999995 6676444321 123567777888899999999999999999999999999886554
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=238.15 Aligned_cols=205 Identities=18% Similarity=0.310 Sum_probs=158.1
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
++|||||||.|+||+|+|.++||||+||+|+ |||+|+++++.++|+++|+|+++++.+++++|+.+...++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 5899999999999999999999999999999 99999999999999999999999999999999976431111 11001
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHH-----cCCcEEE
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQ-----SGADITI 161 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~-----~~~~~ti 161 (378)
.+.+.. +.. +.|++++++... ..+ .++|++++||++++.|+.+++++|++ +++++|+
T Consensus 78 ~i~~~~--~~~-------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIM--SED-------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEe--CCC-------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 133332 211 357888886542 222 37899999999999999999999987 4889999
Q ss_pred EEeecCCCCC----CcceEEEECCC-CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 162 SCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 162 ~~~~~~~~~~----~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
++.+.+++.. ..++++..|++ ++|+.+.|||.........++..+++.+++- ...+++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 9988765431 23678888766 8999999999876544455666666544443 3467899999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=231.55 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=165.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
+||||||.|+||+|+|..+||||+|++|+ |||+|+++.+.++|++++++++++.. ...+++...+... .. +.. +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~-~~--~~~-i 74 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL-AP--NAT-V 74 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh-CC--CCE-E
Confidence 48999999999999999999999999999 99999999999999999999886332 1222322221000 00 111 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.+.+. . ..||+++++.++..+.. .++|++++||++++.++.++++.|.+.+.+.++++.+.+
T Consensus 75 ~~~~~-~---------~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 75 VELDG-E---------TLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEeCC-C---------CCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 22221 1 26999999999988842 478999999999999998999988887777777776652
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHH-HHHHHHhhhC----CC-C
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----PT-A 244 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~-~l~~~l~~~~----~~-~ 244 (378)
...||.+..|++|+|..+.||+.. +.++++|+|+|+++ .|.+.++... +. .
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 457999999989999999888532 13579999999997 6555555421 11 1
Q ss_pred Cchhccccccccccc-ceEEEEe-cceEEecCCHHHH
Q 017030 245 NDFGSEIIPASANEQ-FLKAYLF-NDYWEDIGTIRSF 279 (378)
Q Consensus 245 ~~~~~~~l~~l~~~~-~i~~~~~-~~~~~~i~t~~~~ 279 (378)
..+..++++.+++++ ++.++.+ +++|.||+||+||
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 123357788888664 6999999 6999999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=224.35 Aligned_cols=199 Identities=51% Similarity=0.818 Sum_probs=156.9
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.||||+|+|.+.||+|+|++|++|||+|+++++.++|+++|+|++++..+++.+|+.+...++- ......+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 69999999999999999999999999998689999999999999999999999999999999864321111 0000113
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++...+.. .+....||+++++.++.++++. ..++|++++||++++.++.++++.|.++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIERS---DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 444332210 1223579999999999998531 1378999999999999999999999998888888764
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC-CCCchhc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGS 249 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~-~~~~~~~ 249 (378)
. ++|+|+|++++|.++++...+ ....+..
T Consensus 147 -------------------------~-------------------------~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 -------------------------A-------------------------SMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred -------------------------h-------------------------cCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 1 579999999998777665322 2335567
Q ss_pred ccccccccccceEEEEecceEEec
Q 017030 250 EIIPASANEQFLKAYLFNDYWEDI 273 (378)
Q Consensus 250 ~~l~~l~~~~~i~~~~~~~~~~~i 273 (378)
|+++.+++++++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 899999999999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=231.39 Aligned_cols=222 Identities=20% Similarity=0.274 Sum_probs=167.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+... .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--------~~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--------PN---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--------CC---e
Confidence 69999999999999999999999999999 999999999999999999999999988898887531 11 3
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++|+++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 333322211 2699999999998882 78999999998865 566777778888998888744332
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh---CC--CCC
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FP--TAN 245 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~---~~--~~~ 245 (378)
...++....+ ++++..+.+|+.... ...+.++|+|+|+++++..+.+.. .+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3445544433 378999999875432 124689999999999986553321 11 123
Q ss_pred chhcccccccccccc--eEEEEecceEEecCCHHHHHHHH
Q 017030 246 DFGSEIIPASANEQF--LKAYLFNDYWEDIGTIRSFFEAN 283 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~--i~~~~~~~~~~~i~t~~~~~~a~ 283 (378)
.+.+++++.++++.+ +..+.. ++|.||+|++||.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 445688888887434 445545 8999999999999873
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=225.79 Aligned_cols=233 Identities=20% Similarity=0.326 Sum_probs=167.3
Q ss_pred eeEEEEcCCCCcccccccc-cCcccceeecC-eeeeeeeehhhhhhc-CCcEEEEEeecChh-hHHHHHHhhccCCCCcc
Q 017030 9 VAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~-~~pK~llpi~g-~~pli~~~l~~l~~~-gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~~ 84 (378)
|++||||||.||||+|+|. .+||+|+|++| + |||+|+++++... ++++|+|++++... .+.+++.. . ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~~--- 73 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--LP--- 73 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--CC---
Confidence 6899999999999999996 79999999999 7 9999999999998 59999999987543 45555543 1 01
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe--cCHHHHHHHHHH---cCCcE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADI 159 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~--~d~~~~l~~h~~---~~~~~ 159 (378)
.+.++.... ..||++++..+..++... ..++.++|++||+++. .+|.++++.+.+ .++.+
T Consensus 74 ----~~~ii~ep~---------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 74 ----EENIILEPE---------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred ----CceEEECCC---------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 122332111 259999999998888531 1247899999999776 447777765543 67788
Q ss_pred EEEEeecCCCCCCcceEEEECCCC-----CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHH
Q 017030 160 TISCLPMDDSRASDFGLMKINNEG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (378)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~-----~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 234 (378)
|+.+.+..+ ...||++..+++. +|.+|.|||+...++.+.. ...+++|+|+|+|+++.|.
T Consensus 139 t~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~-------------~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 139 TFGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLE-------------SGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred EEEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhh-------------cCCeEEECceeeeeHHHHH
Confidence 888887643 5789999998653 8999999998765432211 1236899999999998887
Q ss_pred HHHhhhCCCCCc----------------hhcccccc--------cc--cccceEEEEecceEEecCCHHH
Q 017030 235 NLLRWRFPTAND----------------FGSEIIPA--------SA--NEQFLKAYLFNDYWEDIGTIRS 278 (378)
Q Consensus 235 ~~l~~~~~~~~~----------------~~~~~l~~--------l~--~~~~i~~~~~~~~~~~i~t~~~ 278 (378)
+.+++..|.... +..+.++. .+ +..++.+++.+..|.|+|++++
T Consensus 204 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 204 EELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 777765442100 00111221 11 2346888888889999999875
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=214.20 Aligned_cols=203 Identities=19% Similarity=0.334 Sum_probs=155.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC-
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD- 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~- 87 (378)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+.+.. .+..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~----~~~~~ 75 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWS----SLSSK 75 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccc----cccCC
Confidence 6899999999999999999999999999999 999999999999999999999999998898888764311 0110
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHH--HHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~--h~~~~~~~ti~~~~ 165 (378)
..+.+....+. .+.||+++++.+++.+. ++|++++||++++.|+.++++. +..+++++|+.+..
T Consensus 76 ~~v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~ 141 (216)
T cd02507 76 MIVDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLL 141 (216)
T ss_pred ceEEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEe
Confidence 11223222222 14799999999988773 7899999999999999999965 55556667766655
Q ss_pred cCCC-------CCCcceEEEECCC---CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 166 MDDS-------RASDFGLMKINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 166 ~~~~-------~~~~~g~v~~d~~---~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
.... ....++.+..|++ .++..+.+++.... ...++..+|+.+|+ ....+++.++|+|+|+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 142 ASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 4322 1456888999887 57888888776542 33356777776664 34567899999999999864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-28 Score=210.93 Aligned_cols=201 Identities=23% Similarity=0.338 Sum_probs=152.4
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecCh-hhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++.. +.+++++.+.. +..+ ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~--~~- 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLK--QK- 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccC--cc-
Confidence 6899999999999999999999999999999 99999999999999999999998654 45777775421 1110 00
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
..+.+.. +. .+.||+++|+.+.+.+ .++|++++||.+++.++.++++.|+++++.+|+++.+..
T Consensus 76 ~~~~~~~--~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 76 LDEVTIV--LD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred eeEEEec--CC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1111211 11 1369999999998876 368999999999999999999999999999999998754
Q ss_pred CC-----------CCCcceEEEECC-CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 168 DS-----------RASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 168 ~~-----------~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
.. ....+.++..|+ +++++.+....+.. ....++..+|+.+|+- ....++.++|+|+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 21 123467777765 46888776543322 2344577888777643 4567899999999999864
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=206.47 Aligned_cols=221 Identities=24% Similarity=0.363 Sum_probs=168.8
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+| ..||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.. ++ +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~---------~~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN---------PN---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC---------CC---c
Confidence 69999999999985 589999999999 99999999999999999999999888888877643 11 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+++.... ..|++++++.++.+++. ..++|++++||. ++ ..++..+++.|.+.++++++.+.+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 2222111 25899999999998853 137899999998 33 455899999998877888888777654
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~ 245 (378)
+..|+.+..+++|+|..+.||+.....+ ...+++++|+|+|+++.|.++++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 5678988888779999999987532110 0125689999999998776666654221 22
Q ss_pred chhcccccccccc-cceEEEEecce--EEecCCHHHH
Q 017030 246 DFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSF 279 (378)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~~~--~~~i~t~~~~ 279 (378)
.+..++++.+++. .+++++.++|| |+.|+||.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 3346778888865 57999999876 6788998763
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=219.51 Aligned_cols=241 Identities=20% Similarity=0.298 Sum_probs=165.7
Q ss_pred eeEEEEcCCCCccccccccc-CcccceeecC-eeeeeeeehhhhhhcCCcEEEEEeecChh-hHHHHHHhhccCCCCccc
Q 017030 9 VAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~-~pK~llpi~g-~~pli~~~l~~l~~~gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (378)
|.+||||||.||||+|+|.. +||+|+|+.| + |||+|+++.+...++++++|+++.... .+.+.+.. +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~-------- 70 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-I-------- 70 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-c--------
Confidence 67999999999999999996 8999999977 7 999999999999999999999875443 34444432 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec--CHHHHHHHH---HHcCCcEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQNH---RQSGADIT 160 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~--d~~~~l~~h---~~~~~~~t 160 (378)
+.....++. ++. ..|||+++..+..++.+.. ..++.++|++||+++.. +|.++++++ .+.++.+|
T Consensus 71 ~~~~~~~i~--Ep~-------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 71 GKLASNIIL--EPV-------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred CCCcceEEe--ccc-------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 101111221 111 3589999988776663100 11345999999987643 378887765 34566777
Q ss_pred EEEeecCCCCCCcceEEEECC------CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHH
Q 017030 161 ISCLPMDDSRASDFGLMKINN------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (378)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 234 (378)
+...+..+ ...||++..++ .++|.+|.|||+...+..+..+ ..+++|+|+|+|+++.|.
T Consensus 141 lgi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~-------------g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLES-------------GDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhc-------------CCeEEEeeEEEEEHHHHH
Confidence 77765543 57899999873 2589999999987554322211 246899999999987776
Q ss_pred HHHhhhCCCC-----------------Cchhccccc---------ccc-cccceEEEEecceEEecCCHHHHHHHHH
Q 017030 235 NLLRWRFPTA-----------------NDFGSEIIP---------ASA-NEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (378)
Q Consensus 235 ~~l~~~~~~~-----------------~~~~~~~l~---------~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~ 284 (378)
+.+++..|+. ..+..+.++ .++ +..++.+.+.+..|.|+|+++++.++..
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 6665543321 001112223 112 2346888889989999999999999854
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=196.38 Aligned_cols=235 Identities=19% Similarity=0.243 Sum_probs=158.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|++.+||||+|.++||. ||+|+|++|+ |||+|+++.+.++++++|+|++++ +.+.+++.+ + +
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~--------~ 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA-F--------G 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-c--------C
Confidence 35789999999999993 7999999999 999999999999999999988853 556666642 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++...+.. +.|+++... +...+.. ...+.+++++||+ +++.+ +.++++.|.++++++++++.
T Consensus 63 ---~~v~~~~~~~-------~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~ 128 (245)
T PRK05450 63 ---GEVVMTSPDH-------PSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAV 128 (245)
T ss_pred ---CEEEECCCcC-------CCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeee
Confidence 1122211221 246665443 3333321 0136799999999 66555 88999988777677777666
Q ss_pred ecCC----CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh
Q 017030 165 PMDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (378)
Q Consensus 165 ~~~~----~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~ 240 (378)
+..+ ..++.++++ +|++|+|+.|.|||..+..... +.+ ...+++.++|+|+|+++.+..+.+..
T Consensus 129 ~~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~----------~~~-~~~~~~~~~Giy~~~~~~l~~~~~~~ 196 (245)
T PRK05450 129 PIHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAF----------ADS-APTPVYRHIGIYAYRRGFLRRFVSLP 196 (245)
T ss_pred ecCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCcc----------ccc-cCccccEEEEEEecCHHHHHHHHhCC
Confidence 6522 234557755 8888999999999854321000 000 01247899999999999997665432
Q ss_pred CCCCCchh--cccccccccccceEEEEecc-eEEecCCHHHHHHHHHhc
Q 017030 241 FPTANDFG--SEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 241 ~~~~~~~~--~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~ 286 (378)
+...... .++++.+-++.+++++..+| +|.|||||+||.+|+..+
T Consensus 197 -~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 197 -PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred -CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 2111111 11233333566899999996 999999999999998764
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=192.21 Aligned_cols=227 Identities=19% Similarity=0.284 Sum_probs=154.8
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++.|||||+|.++||. ||+|+|++|+ |||+|+++.+.++ |+++|+|++++ +.+.+++.+ + +
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--------~ 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--------G 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--------C
Confidence 3679999999999994 7999999999 9999999999998 99999998864 566666642 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHc-CCcEEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQS-GADITISC 163 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~-~~~~ti~~ 163 (378)
+.++...+.. ..|+++ +..+...+.. ..+.|++++||+ +++. ++..+++.|.+. ++++++++
T Consensus 63 ---~~~~~~~~~~-------~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 63 ---GKVVMTSPDH-------PSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLA 127 (239)
T ss_pred ---CEEEEcCccc-------CchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 1222111111 247775 5555555531 027799999998 5544 589999988766 77888888
Q ss_pred eecCCCC----CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 164 LPMDDSR----ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 164 ~~~~~~~----~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+.+++. ...++ +..+++|+|+.|.+++...... +. ...+.++++|+|+|++++|..+...
T Consensus 128 ~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~ 192 (239)
T cd02517 128 TPISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAAL 192 (239)
T ss_pred EEcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhC
Confidence 8765421 22344 5567778999998765432100 00 0013578999999999999766443
Q ss_pred hCCCCCchhccccc--cccc-ccceEEEEecceEEecCCHHHHHHHHH
Q 017030 240 RFPTANDFGSEIIP--ASAN-EQFLKAYLFNDYWEDIGTIRSFFEANL 284 (378)
Q Consensus 240 ~~~~~~~~~~~~l~--~l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~ 284 (378)
. ....++ .+.+. .+++ +.+++++..+++|.+||||+||.+|++
T Consensus 193 ~-~~~~~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 193 P-PSPLEQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred C-Cchhhh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 111111 12222 3344 446999999999999999999999975
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=180.42 Aligned_cols=223 Identities=15% Similarity=0.227 Sum_probs=149.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEe-ecChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~-~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
|..|+|||||||.|+||+| +.||+|+.++|+ ++|+|++++|.++|+++++||+ ++..+.+++++++.. +
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~-~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP-F----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC-c-----
Confidence 4679999999999999998 899999999999 9999999999999999999999 888888888876432 1
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCH-HHHHHHHHHcCCcEEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQSGADITISC 163 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~-~~~l~~h~~~~~~~ti~~ 163 (378)
..+++.....+ -.+|+.+|+.++++++ +.|++++||+++...+ +.++ +.+.. ++.+
T Consensus 71 ----~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~----~a~~~-~li~ 127 (239)
T COG1213 71 ----NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLL----EAPGE-GLIV 127 (239)
T ss_pred ----ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHH----hCcCC-cEEE
Confidence 12333322221 1367999999999985 5799999999998864 3333 33222 2333
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
...+......-.....+++|++..+.++-... .-.++|++.|+++++....+.. ..
T Consensus 128 d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~-~e 183 (239)
T COG1213 128 DRRPRYVGVEEATKVKDEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELL-VE 183 (239)
T ss_pred eccccccccCceeEEEecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHH-hh
Confidence 22221111111222344678888887655422 2358999999999886543322 11
Q ss_pred CCchhcccccccccccceEEEEe-----cceEEecCCHHHHHHHHHhccc
Q 017030 244 ANDFGSEIIPASANEQFLKAYLF-----NDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~-----~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.. ...+.+..+...+....+ ..+|++|+||+|+.+|.+.+..
T Consensus 184 ~~---~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 184 RS---EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred hh---hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 10 111222222222222222 3579999999999999887653
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=181.45 Aligned_cols=225 Identities=18% Similarity=0.303 Sum_probs=150.9
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~--------~ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-F--------G 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-c--------C
Confidence 5789999999999994 5999999999 9999999999998 89999998864 567777643 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCC-cEEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGA-DITISC 163 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~-~~ti~~ 163 (378)
.. +.+. .+.. ..|++ .+..+...++ .+.|++++||. +. ..++..+++.|.+.+. .+++++
T Consensus 64 ~~-v~~~--~~~~-------~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 GK-VVMT--SDDH-------LSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred Ce-EEec--CccC-------CCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 11 1111 1111 23666 4555655553 47899999997 33 5558999998876543 566666
Q ss_pred eecCCC-C---CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 164 LPMDDS-R---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 164 ~~~~~~-~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+.+.. . +..+++ ..+++|++..+.|+|.....+. ...+.+.++|+|+|++++|..+ ..
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~---------------~~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG---------------ESARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC---------------CCCceeEEEEEEEeCHHHHHHH-Hc
Confidence 654421 1 334444 4456789999987653211100 0013478999999999999754 32
Q ss_pred hCCCC-Cchhc-ccccccc-cccceEEEEecceEEecCCHHHHHHHHHh
Q 017030 240 RFPTA-NDFGS-EIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 240 ~~~~~-~~~~~-~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~ 285 (378)
..... ..+.. +++ .++ .+.+++++..+++|.||+||+||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 11222 444 444 45669999999999999999999999764
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=196.34 Aligned_cols=244 Identities=19% Similarity=0.310 Sum_probs=166.2
Q ss_pred cceeEEEEcCCCCccccccccc-CcccceeecC-eeeeeeeehhhhhhcCCcEEEEEeecChh-hHHHHHHhhccCCCCc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGV 83 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~-~pK~llpi~g-~~pli~~~l~~l~~~gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~ 83 (378)
++|.+||||||.||||+|+|.. .||+|+|+.| + |||+++++.+...++.+.+|+++.... .+++.+.. . ..
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~-sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~--~~-- 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDL-TMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-L--NK-- 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCC-CHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-c--CC--
Confidence 3489999999999999999998 7999999966 6 999999999998888888888875544 34444432 1 10
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC--HHHHHHHH---HHcCCc
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNH---RQSGAD 158 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d--~~~~l~~h---~~~~~~ 158 (378)
.... + ++.+.. .+|+.++..+..++.+.....+..++|+++|+++... |.+.++.- .+.+..
T Consensus 78 -~~~~-i-i~EP~~----------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~l 144 (478)
T PRK15460 78 -LTEN-I-ILEPAG----------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKL 144 (478)
T ss_pred -cccc-E-EecCCC----------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCE
Confidence 0001 1 222221 4799998777666643100113578999999976543 65555443 234777
Q ss_pred EEEEEeecCCCCCCcceEEEECCC---------CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEe
Q 017030 159 ITISCLPMDDSRASDFGLMKINNE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~---------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~ 229 (378)
+|+...|... .+.||++..++. .+|.+|.|||+...+..+..++ .+++|+|+|+|+
T Consensus 145 vt~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G-------------~y~WNsGiF~~~ 209 (478)
T PRK15460 145 VTFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASG-------------EYYWNSGMFLFR 209 (478)
T ss_pred EEEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcC-------------CEEEecceehee
Confidence 8877776654 678999987642 2699999999998877665443 368999999999
Q ss_pred HHHHHHHHhhhCCCCC--------------chh---ccccc--------ccc--cccceEEEEecceEEecCCHHHHHHH
Q 017030 230 KEILLNLLRWRFPTAN--------------DFG---SEIIP--------ASA--NEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 230 ~~~l~~~l~~~~~~~~--------------~~~---~~~l~--------~l~--~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
.+.+.+.+++..|... .+. .+.++ +.+ +..++.+.+.+-.|.|+|++.++.+.
T Consensus 210 a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 210 AGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 9988777665444210 000 11111 111 12458888888889999999999887
Q ss_pred HH
Q 017030 283 NL 284 (378)
Q Consensus 283 ~~ 284 (378)
..
T Consensus 290 ~~ 291 (478)
T PRK15460 290 SA 291 (478)
T ss_pred hc
Confidence 53
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=177.48 Aligned_cols=244 Identities=20% Similarity=0.305 Sum_probs=170.1
Q ss_pred ceeEEEEcCCCCcccccccc-cCcccceeecC-eeeeeeeehhhhhh-cCCcEEEEEeecChhh-HHHHHHhhccCCCCc
Q 017030 8 TVAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCIN-SGINKVYILTQYNSAS-LNRHLARAYNYGSGV 83 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~-~~pK~llpi~g-~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~-i~~~l~~~~~~~~~~ 83 (378)
+|.+||||||.|+|||||+. .+||++|++.+ + +|++.+++++.. .+..++++++++.+.. +++.+.+. ..+.
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~---~~~~ 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI---DIEN 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh---hhcc
Confidence 47899999999999999975 58999999966 7 999999999988 6789999999866543 45555431 0000
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC--HHHHHHHH---HHcCCc
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNH---RQSGAD 158 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d--~~~~l~~h---~~~~~~ 158 (378)
.. . -++.+. | ..|+.|+..+.-.+... .++.-++|+++|+++..+ |.+.++.. .+++..
T Consensus 77 -~~-~--illEP~------g----RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~l 140 (333)
T COG0836 77 -AA-G--IILEPE------G----RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGI 140 (333)
T ss_pred -cc-c--eEeccC------C----CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCE
Confidence 00 1 133322 2 36999998776666431 224469999999977554 66666543 346777
Q ss_pred EEEEEeecCCCCCCcceEEEECCC------CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHH
Q 017030 159 ITISCLPMDDSRASDFGLMKINNE------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 232 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~ 232 (378)
+|+...|... ...||+++..+. -+|.+|.|||+.+.++++..++ .+++|+|+|+|+...
T Consensus 141 VTfGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG-------------~y~WNSGmF~Fra~~ 205 (333)
T COG0836 141 VTFGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESG-------------EYLWNSGMFLFRASV 205 (333)
T ss_pred EEEecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcC-------------ceEeeccceEEEHHH
Confidence 7887776543 688999987542 3799999999999888777654 367899999999998
Q ss_pred HHHHHhhhCCCC--------Cch-----h---c--------ccccccc--cccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 233 LLNLLRWRFPTA--------NDF-----G---S--------EIIPASA--NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 233 l~~~l~~~~~~~--------~~~-----~---~--------~~l~~l~--~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
+.+.+++..|+. .+. . . .-+.+.+ +..++.+.+.+-.|.|+|++..+.+....-
T Consensus 206 ~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~d 285 (333)
T COG0836 206 FLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDKD 285 (333)
T ss_pred HHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhcC
Confidence 777766654431 000 0 0 0111111 235688888888899999999988875433
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-21 Score=154.53 Aligned_cols=220 Identities=15% Similarity=0.208 Sum_probs=148.7
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.|||||||.||||.|+|...||+|+.|.|+ |||+++|+.|.++||++|+||+||..+++ +|+++.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999999 99999999999999999999999999888 58877651
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+.+++..... -.+...++..+++++. +..++.+|.++...+ +........-.......
T Consensus 69 -vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC
Confidence 4444332211 1357788999998884 567889998765542 11111111112122221
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH---HHHHhhhCCC--
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL---LNLLRWRFPT-- 243 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l---~~~l~~~~~~-- 243 (378)
..+--.+..+.+|+|+++.-.... .+.-+|+-+|+...- ..+++...-.
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~~------------------------~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGLN------------------------GYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCcc------------------------cceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 222334556778999998543321 346789999987533 3344433111
Q ss_pred -CCchhcccccccccccceEEEEecc-eEEecCCHHHHHHHHHhccc
Q 017030 244 -ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 -~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~l~ 288 (378)
..-+.+++.-+-+++..+++-..++ --+++++.++|......++.
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 1123344545555666666665554 47889999999988776554
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=159.99 Aligned_cols=235 Identities=17% Similarity=0.171 Sum_probs=152.4
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+.+++..+.+| ++...+++.+++.+. +
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~~~---------~ 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCRGF---------G 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHHHc---------C
Confidence 46789999999999994 6999999999 99999999999876544433 345667777776421 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE--E
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI--S 162 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti--~ 162 (378)
++++...+.. ..||+++ ..+.+.++. ..+.+++++||. +.+.+ +..+++.+.+. .++++ +
T Consensus 109 ---v~vi~~~~~~-------~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~ 172 (293)
T PLN02917 109 ---ADVIMTSESC-------RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTA 172 (293)
T ss_pred ---CEEEeCCccc-------CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEE
Confidence 1222111111 2477776 467677742 147899999999 55555 88999877543 33333 2
Q ss_pred EeecCCCCCCcceEEE--ECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh
Q 017030 163 CLPMDDSRASDFGLMK--INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~--~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~ 240 (378)
+.+.....+.+||.+. .|++|+++.|..++-.+.... .+++ ..-.+.++|+|+|+.+.|. .+.+.
T Consensus 173 ~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~~--~~i~~~n~Giy~f~~~~L~-~l~~l 239 (293)
T PLN02917 173 VTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVNP--QFPYLLHLGIQSYDAKFLK-IYPEL 239 (293)
T ss_pred eeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cccc--ccceEEEEEEEEeCHHHHH-HHHcC
Confidence 2222333367888885 777888786664432211000 0111 1225789999999999997 44543
Q ss_pred CCCCCchhcccccccc---cccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 241 FPTANDFGSEIIPASA---NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 241 ~~~~~~~~~~~l~~l~---~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.++ +.-.+++|.++. ++.+|..+..+.....|||++|+..+++.+.+
T Consensus 240 ~~~-n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 240 PPT-PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCC-cccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 222 222344555543 35578888776567789999999999998754
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=139.16 Aligned_cols=211 Identities=18% Similarity=0.202 Sum_probs=138.8
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecCh-hhHHHHHHhhccCCCCcccCC
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (378)
.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+..+ ++++|+|++++.. +.+.+.+...
T Consensus 1 ~aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~----------- 65 (217)
T TIGR00453 1 SAVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR----------- 65 (217)
T ss_pred CEEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------
Confidence 37999999999997 3479999999999 9999999999998 7999999997653 3444333210
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~ 165 (378)
..+.++.. . .+..++++.+...+++ .+.++++.||. ++..+ +..+++.+.+. ++++...+
T Consensus 66 ~~~~~~~~--~---------~~~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~ 127 (217)
T TIGR00453 66 AVPKIVAG--G---------DTRQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALP 127 (217)
T ss_pred CcEEEeCC--C---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEe
Confidence 01222211 1 1355788888877621 47899999999 56655 78888877653 34444444
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
.. .++...+++|.+..+.++... ..+.+ .|.|+...|.+++........
T Consensus 128 ~~------~~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~~ 176 (217)
T TIGR00453 128 VA------DTLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEGF 176 (217)
T ss_pred cc------ceEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcCC
Confidence 43 244455566778777663211 23344 699999999877754322211
Q ss_pred chhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHh
Q 017030 246 DFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 246 ~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~ 285 (378)
.+ .|....+. .+.++..+..+....+|+||+||..|+..
T Consensus 177 ~~-~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 177 EI-TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CC-CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 11 12122221 25567777776667899999999888753
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=139.24 Aligned_cols=219 Identities=17% Similarity=0.188 Sum_probs=140.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecCh-hhHHHHHHhhccCCCCc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~-~~i~~~l~~~~~~~~~~ 83 (378)
++++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 356889999999999995 4579999999999 99999999999864 899999997654 3333322110
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti 161 (378)
. ..+.++. .. .+.+++++.+...+.+ .+.++++.||. ++..+ +..+++.+.+.+ ..+
T Consensus 70 -~--~~~~~~~--~~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 70 -D--PKVTVVA--GG---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred -C--CceEEeC--Cc---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0 0122221 11 2468999999887743 47899999998 55555 889998876553 334
Q ss_pred EEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
.+.+..+ .+..+ +++|.+..+.++.. ....-+.|.|+.+.|.++++...
T Consensus 129 ~~~~~~~----~~~~v--~~~g~~~~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~ 177 (227)
T PRK00155 129 LAVPVKD----TIKRS--DDGGGIVDTPDRSG-------------------------LWAAQTPQGFRIELLREALARAL 177 (227)
T ss_pred EEEeccc----cEEEE--cCCCceeecCChHH-------------------------heeeeCCccchHHHHHHHHHHHH
Confidence 4444432 12222 44566665532111 11223489999999988876532
Q ss_pred CCCCchhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 242 ~~~~~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
... .+..+....+. .+.++..+..+..+.+|+|++||..|+..+.+
T Consensus 178 ~~~-~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 178 AEG-KTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred hcC-CCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 211 11111111111 24567777666668899999999999876643
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=135.47 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=142.1
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
+||+|+|.|+||. +|+|++++|+ |||.|+++.+.++++++|+|++.. +.+.+++.+ ++...+
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~---------~g~~~v 63 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQK---------FGIEVC 63 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH---------cCCEEE
Confidence 7999999999993 8999999999 999999999998899999998853 345555532 111111
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEeecCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
. ..+.. ..|+ +.+..+...+.. ...+.++++.||. +...+ +.++++.+.+.++++++...+..+
T Consensus 64 ~---~~~~~-------~~Gt-~r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 64 M---TSKHH-------NSGT-ERLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred E---eCCCC-------CChh-HHHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 1 11110 1244 334344443321 0136789999999 56655 888888876555677777777543
Q ss_pred CC---CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC-
Q 017030 169 SR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA- 244 (378)
Q Consensus 169 ~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~- 244 (378)
.. ..+...+..|.+|++..|.+.+-......... ...|. ....+...|+|.|+.++|.++.... +..
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~-----~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~-~~~l 200 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAK-----RQTPV---GDNLLRHIGIYGYRAGFIEEYVAWK-PCVL 200 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccc-----ccccc---ccceeEEEEEEeCCHHHHHHHHhCC-CCcc
Confidence 11 12244455577788777765532111000000 00010 0114568999999999998775442 221
Q ss_pred Cchh-cccccccccccceEEEEecce-EEecCCHHHH
Q 017030 245 NDFG-SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 279 (378)
Q Consensus 245 ~~~~-~~~l~~l~~~~~i~~~~~~~~-~~~i~t~~~~ 279 (378)
...+ -+.|+.+-.+.+|.+...+.. -..|+||+|+
T Consensus 201 e~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 201 EEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1111 245677777889999888765 4589999996
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-16 Score=131.36 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=94.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|++++++..+.++.++....
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 7899999999999974 79999999999 9999999999998999999999888777887775321
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-Eec-CHHHHHHHHHHcCCcEEEEEee
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRM-DYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~-d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
..+.. ... .|...++..++..+.. .++|++++||+. ... .+..+++.+...+...+.++.+
T Consensus 65 -~~~~~-~~g---------~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN-ASG---------KGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe-cCC---------CCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11111 111 4777888888765432 479999999993 444 4888998877665555555444
|
At this time this gene appears to be present only in Archea |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=133.37 Aligned_cols=211 Identities=18% Similarity=0.254 Sum_probs=136.9
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++.+..++ +++|+|++++........+.. +... .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~-------~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGLS-------K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cccC-------C
Confidence 589999999999974 379999999999 99999999999876 899999997765444433311 1000 0
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
.+.++.. . .+...+++.+...++.. ..+.++++.||. +++.+ +..+++.+.+.+. .+...+.
T Consensus 70 ~~~~~~~--~---------~~~~~si~~al~~~~~~---~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVEG--G---------ATRQDSVLNGLKALPDA---DPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEECC--c---------hHHHHHHHHHHHhcccC---CCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 1233221 1 24578899998887410 147899999998 55655 8889888765443 3333333
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (378)
.+ +....|++|.+.++.+.... ..+.++ ++|+.+.|.+++....+.. .
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~~-~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEEG-E 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhcC-C
Confidence 22 23345667888888764221 245677 9999999988876643221 1
Q ss_pred hhccccccccc--ccceEEEEecceEEecCCHHHHHH
Q 017030 247 FGSEIIPASAN--EQFLKAYLFNDYWEDIGTIRSFFE 281 (378)
Q Consensus 247 ~~~~~l~~l~~--~~~i~~~~~~~~~~~i~t~~~~~~ 281 (378)
+..|.. .++. +.++..+..+..-.||+||+||..
T Consensus 182 ~~td~~-~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 182 EFTDDA-SLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CcCcHH-HHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 111111 1222 345666665555569999999854
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.7e-16 Score=128.12 Aligned_cols=121 Identities=25% Similarity=0.392 Sum_probs=92.7
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999997 59999999999 999999999999999999999977 4455554321 1 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.++..... ..|++.+++.+...+.. .++|++++||+ +++.+ +..+++.+.+.++++++...
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 33332221 14999999999988732 59999999999 44555 88999988777777655443
|
... |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=138.45 Aligned_cols=208 Identities=15% Similarity=0.182 Sum_probs=137.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+.+.+... .
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~------~- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE------I- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc------C-
Confidence 466899999999999994 4589999999999 99999999999987 7999999976654433332111 0
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
..+.++. .. .+..++++.+++.++ .+.+++..||. +++.+ +..+++...+ +++++.
T Consensus 72 ---~~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 72 ---KFVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ---CeEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 0122221 11 246788999988875 37889999997 55555 6777776543 356777
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
..++.+ +..|+...+|.+ .+..+ ++|+... .+.+.+..+
T Consensus 130 ~~pv~D--tik~~~~tldR~-~l~~~-QTPQ~f~---------------------------------~~~l~~a~~---- 168 (378)
T PRK09382 130 ALPVAD--TLKRANETVDRE-GLKLI-QTPQLSR---------------------------------TKTLKAAAD---- 168 (378)
T ss_pred EEEecc--CcEEeeeEcCcc-cEEEE-ECCCCCC---------------------------------HHHHHHHHh----
Confidence 777765 445655455433 44433 6665432 111212111
Q ss_pred CCCchhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 243 TANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 243 ~~~~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
....+ .|..+.+. .+.++..+..+..|.+|++|+||..|+..+..
T Consensus 169 ~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 11111 23223322 25678888888999999999999999987654
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=127.82 Aligned_cols=217 Identities=18% Similarity=0.224 Sum_probs=135.5
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ ..+.+.+++.+. +
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~~---~------ 62 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARKY---G------ 62 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHHh---C------
Confidence 4679999999999994 5999999999 99999999999887 78887766 334455554321 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ti~~~ 164 (378)
...+...+.....+ ..|+.++++.+.+.++.. ....+.++++.||. +... ++.++++.+...+++.++.+.
T Consensus 63 ~~~~~~~~~~~~~~------~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 63 AEVPFLRPAELATD------TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CCceeeCChHHCCC------CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 00011111100000 137889999998877521 00136899999999 4444 489999998877778777777
Q ss_pred ecCCCCCCcceEEEECCCC-CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 165 PMDDSRASDFGLMKINNEG-RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~-~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
+..+ ..-++.+ .+++| .+..+.++..... +. .......++|+|+++.+.+.+. .
T Consensus 136 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-q~---------------~~~~~~~n~~~y~~~~~~~~~~-----~- 190 (223)
T cd02513 136 EFHR--FPWRALG-LDDNGLEPVNYPEDKRTRR-QD---------------LPPAYHENGAIYIAKREALLES-----N- 190 (223)
T ss_pred ecCc--CcHHhee-eccCCceeccCcccccCCc-CC---------------ChhHeeECCEEEEEEHHHHHhc-----C-
Confidence 6543 2223333 22223 2222212111100 00 0112457889999999977431 0
Q ss_pred CCchhcccccccccccceEEEEecc-eEEecCCHHHHHHHHHh
Q 017030 244 ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~ 285 (378)
.+ -+.++..+..+. ...||+|++|+..|...
T Consensus 191 --~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 191 --SF---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred --Cc---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 01 156777777665 48999999999988653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=128.94 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=136.3
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecCh-hhHHHHHHhhccCCCCccc
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~ 85 (378)
.+.+||||||.|+||. ...||+|+|++|+ |||.|+++.+..+ .+++|+|+++... ..+.+.+.+ + + +
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~--~----~ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-L--N----V 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-c--C----c
Confidence 3689999999999996 4579999999999 9999999999875 5899999986543 233334432 1 1 0
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~ 163 (378)
....++++... .+..++++.++..++. .+.++++.||. ++..+ +..+++.+.+.++. +.+
T Consensus 71 ~~~~~~~v~~g-----------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~ 132 (230)
T PRK13385 71 ADQRVEVVKGG-----------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICA 132 (230)
T ss_pred CCCceEEcCCC-----------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEE
Confidence 00113333211 1345888888877743 35678889999 66666 78888877665432 333
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+..+ .+... .+|.+....++. . .+.--+.|.|+.+.|.++.+.....
T Consensus 133 ~~~~d------ti~~~-~~~~~~~~i~r~---~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD------TVKRV-KDKQVIETVDRN---E----------------------LWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc------eEEEE-cCCeeEeccCHH---H----------------------HhhhcCCceeeHHHHHHHHHHHHhc
Confidence 33321 11122 234443332211 0 1223468999998887776542111
Q ss_pred CCchhccccccc-ccccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 244 ANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~~~~~~~~l~~l-~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.. +..+....+ -.+.++..++-+.....|+||+|+..|...+..
T Consensus 181 ~~-~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 181 QF-LGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred CC-CcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 11 112211111 135678888777778899999999999876643
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=124.56 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=86.8
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+.+... ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999997 59999999999 999999999999899999999987765544443211 11 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcE
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ 159 (378)
.++..... ..|++++++.+..+..+ .+.+++++||+ ++..+ +..+++.+...+..+
T Consensus 65 ~~v~~~~~--------~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVHNPQY--------AEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEECcCh--------hcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 23322111 14888999888762111 47899999999 44444 788888776555543
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-14 Score=114.03 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=86.6
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+.+ .+++|+++++.+...+++|+....
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 679999999999995 367999999999 999999999998 789999999999888998885421
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
++++.... .|--.-++.+.+.+. .|+|++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~tpG----------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG----------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC----------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 34443221 266777888877774 5999999999 44544 666666654
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=119.36 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=81.9
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|.+|.+||||||.|+||. ..||+|+|++|+ |||+|+++.+. .++++|+|++++..+.+. . .
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~-~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARYA----A-F-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHHH----h-c--------
Confidence 467899999999999994 279999999999 99999999998 789999998875433221 1 0
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
+ +.++...... ..|+..+++.+....+ .+.+++++||. +++.+ +..+++.+.
T Consensus 62 ~---~~~v~~~~~~-------~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 62 G---LPVIPDSLAD-------FPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred C---CcEEeCCCCC-------CCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 1 1122211110 1478899998887654 47899999999 65655 677777543
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-14 Score=120.28 Aligned_cols=120 Identities=22% Similarity=0.351 Sum_probs=88.6
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...++++|+|++++....+.+++.. ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG---------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC---------CC--
Confidence 4689999999999974 9999999999 99999999999989999999998766555444321 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.++..... ..|++.+++.++.++.. ..+.+++++||+ +++.+ +..+++.+...++.
T Consensus 64 -~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 -VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred -eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 222221111 14899999999888752 147899999999 55544 78888776544443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-13 Score=119.06 Aligned_cols=218 Identities=12% Similarity=0.115 Sum_probs=128.5
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhh-HHHHHHhhccCCCCc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSAS-LNRHLARAYNYGSGV 83 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~-i~~~l~~~~~~~~~~ 83 (378)
+..+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+ .++++|+|++++.... +++.+.. +
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~------ 90 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-I------ 90 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-c------
Confidence 445789999999999996 4579999999999 999999999988 4899999999866433 3333321 1
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCC--e-EEecC-HHHHHHHHHHcCCcE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGD--H-LYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD--~-~~~~d-~~~~l~~h~~~~~~~ 159 (378)
+.. +.+.. .. .+..++++.++..+.. +..+|+.+| . +...+ +..+++...+.+ +
T Consensus 91 --~~~-i~~v~--gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a 148 (252)
T PLN02728 91 --DVP-LKFAL--PG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHG--A 148 (252)
T ss_pred --CCc-eEEcC--CC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--e
Confidence 111 22221 11 2456789888887752 344566666 3 55555 688888766554 3
Q ss_pred EEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 160 TISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+...+..+ -+...++++.|... ++.+.. +.---=-.|+.+.|.+..++
T Consensus 149 ~i~~~~~~d------tik~v~~~~~v~~t---~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~ 197 (252)
T PLN02728 149 AVLGVPVKA------TIKEANSDSFVVKT---LDRKRL----------------------WEMQTPQVIKPELLRRGFEL 197 (252)
T ss_pred EEEeecchh------hEEEecCCCceeec---cChHHe----------------------EEEeCCccchHHHHHHHHHH
Confidence 455554433 12223444544332 221110 11112234566666555554
Q ss_pred hCCCCCchhccccccc-ccccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 240 RFPTANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 240 ~~~~~~~~~~~~l~~l-~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
....... ..|-...+ ..+.+|...+-+..-.-|.+|+|+..|...+..
T Consensus 198 ~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 198 VEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 3221111 11111111 124567776656567889999999999876543
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=108.64 Aligned_cols=234 Identities=19% Similarity=0.260 Sum_probs=161.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++..+||+|.=.+||| --|||-.|+|+ |||.|+.+++.++|..+++|.+ +.+.+.+++.+ +|
T Consensus 2 ~~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~---------~G 63 (247)
T COG1212 2 MKFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQA---------FG 63 (247)
T ss_pred CceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHH---------hC
Confidence 4567899999899999 47999999999 9999999999999999999988 55677777753 22
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.+.+.-.... ..|| +.+..+...+.- ...+-++-+.||. +.... +..+++.....++++..+..
T Consensus 64 ~~avmT~~~h----------~SGT-dR~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 GEAVMTSKDH----------QSGT-DRLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred CEEEecCCCC----------CCcc-HHHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 2222211111 1366 455555555542 1256788899999 54444 78888877777777777666
Q ss_pred ecCCC---CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 165 PMDDS---RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 165 ~~~~~---~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
+..+. ..++--.+..|.+|+.+.|...+-+..... . .....+...|+|.|+.++|.++....
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcC-
Confidence 65542 124455677888899999998776532110 0 00124567899999999998876543
Q ss_pred CCCCchh--cccccccccccceEEEEecceE-EecCCHHHHHHHHHhcc
Q 017030 242 PTANDFG--SEIIPASANEQFLKAYLFNDYW-EDIGTIRSFFEANLALT 287 (378)
Q Consensus 242 ~~~~~~~--~~~l~~l~~~~~i~~~~~~~~~-~~i~t~~~~~~a~~~~l 287 (378)
+..-+.. -+-|+-|-.+.+|.+...+..- ..++|++|+.++.+.+.
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 3211111 1345556678899999887654 89999999999987764
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-12 Score=109.93 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=138.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccCCce
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (378)
|||||+|.++||. .|.++|++|+ |||.|+++.+.+++ +++|+|.+. .+.+.+...+ + +...
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~-~--------g~~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS-Y--------GASV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH-c--------CCEe
Confidence 7999999999993 6999999999 99999999999886 577766553 3455554432 1 1111
Q ss_pred EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEEEEEeecC
Q 017030 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 90 i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
+..-+..-.. ...|+.++++.+...++.. ...+.++++.+|. +... ++..+++.+.+.+++..+.+.+..
T Consensus 64 ~~~r~~~l~~------d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 64 PFLRPKELAD------DFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred EEeChHHHcC------CCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 1111110000 0147899999998887421 1147799999999 4444 489999988877788777777754
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCch
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (378)
.. ..+. ...+++|++..+.......+.+.+ ...+..+.++|+++++.+.+ . ..+
T Consensus 136 ~~--~~~~-~~~~~~g~~~~~~~~~~~~~rQd~---------------~~~y~~nga~y~~~~~~~~~---~-----~~~ 189 (222)
T TIGR03584 136 FP--IQRA-FKLKENGGVEMFFPEHFNTRSQDL---------------EEAYHDAGQFYWGKSQAWLE---S-----GPI 189 (222)
T ss_pred CC--hHHh-eEECCCCcEEecCCCcccCCCCCC---------------chheeeCCeEEEEEHHHHHh---c-----CCc
Confidence 31 1222 234456766665432211111111 12356799999999997742 1 011
Q ss_pred hcccccccccccceEEEEecc-eEEecCCHHHHHHHHHhc
Q 017030 248 GSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~ 286 (378)
-++++..|..+. ...||++++|+..|...+
T Consensus 190 ---------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 ---------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ---------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 145677787765 489999999999987643
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=112.38 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=81.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
.+++.+||||||.|+||. .||+|+|++|+ |||+|+++.+... +.+|+|++++ .+.+..... .+
T Consensus 5 ~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~------~~--- 67 (200)
T PRK02726 5 KNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPW-PERYQSLLP------PG--- 67 (200)
T ss_pred CCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhcc------CC---
Confidence 356899999999999996 58999999999 9999999999754 7888888753 222222111 01
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
+.++...+. ..|...+++.++..++ .+.+++++||. ++..+ +..+++...
T Consensus 68 ----~~~i~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 68 ----CHWLREPPP--------SQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ----CeEecCCCC--------CCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 223322221 1489999999998875 37899999999 55655 677777543
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-13 Score=117.98 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=77.6
Q ss_pred cccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCC-----------CccccCCCCcEEccCCCCCCcee---
Q 017030 249 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP-----------MFSFYDATKPIYTSRRNLPPSKI--- 314 (378)
Q Consensus 249 ~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~-----------~~~~~~~~~~i~~~~~i~~~~~i--- 314 (378)
.|.++.++..+ ++.++|||.|+ ++|+++|+++|+... ...++..+..|.+.+.+.++++|
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~ 104 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN 104 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence 57888888766 88899999999 999999999997631 11122233344444444444444
Q ss_pred ----eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEee---------eeeCCCCeEeeeeee
Q 017030 315 ----DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKV---------SPANPLCRRIWKCSS 369 (378)
Q Consensus 315 ----~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~ 369 (378)
.++.|. +++||+||.|+ ++.|. +|+||++|+||.++.|.+ ++|++++.|+.+|.+
T Consensus 105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI 175 (231)
T TIGR03532 105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVI 175 (231)
T ss_pred CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEE
Confidence 233332 57778888887 67774 788888888888888863 666666666666665
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=110.36 Aligned_cols=109 Identities=17% Similarity=0.345 Sum_probs=76.2
Q ss_pred CccccccceeEEEEcCCCCcccccccccCcccceeecC-eeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccC
Q 017030 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY 79 (378)
Q Consensus 1 ~~~~~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g-~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~ 79 (378)
|-....+++.+||||||.++||+ .||+|+|++| + |||+|+++.+... +++|+|++++ ..+ . +
T Consensus 1 ~~~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~ 63 (196)
T PRK00560 1 MKNPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F 63 (196)
T ss_pred CCCccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c
Confidence 44455678999999999999996 6999999999 9 9999999999876 8899888874 111 0 0
Q ss_pred CCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHH
Q 017030 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDF 148 (378)
Q Consensus 80 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~ 148 (378)
. ..++.+.+.. ..|...++..++...+ .+.+++++||+ ++..+ +..+
T Consensus 64 ~---------~~~v~d~~~~-------~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 N---------APFLLEKESD-------LFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred C---------CcEEecCCCC-------CCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 1222221111 2466667766554443 48999999999 55665 4444
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-13 Score=112.49 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=81.0
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+... +.+|+|++++..+. +. . .+
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~--~--------~~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---YA--L--------LG-- 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---Hh--h--------cC--
Confidence 468999999999997 39999999999 9999999999987 89999999776543 11 0 01
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHH
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h 152 (378)
+.++..... ..|+..+++.++..++ .+.+++++||+ +.+.+ +..+++.+
T Consensus 59 -~~~v~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 -VPVIPDEPP--------GKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred -CcEeeCCCC--------CCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 122222211 2589999999988775 48999999999 55555 67777765
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.7e-12 Score=117.75 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=84.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
++++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++..
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~---------- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG---------- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC----------
Confidence 456899999999999994 379999999999 999999999975 4899998776554444332210
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.++...... ..|...+++.++..++ .+.+++++||+ ++..+ +..+++.+...+++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 1112111110 1378899999988764 37799999998 55665 67777765444444
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=104.74 Aligned_cols=213 Identities=18% Similarity=0.244 Sum_probs=124.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecCh-hhHHHHHHhhccCCCCcccC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 86 (378)
+.|||||||.|+||. ...||.+++++|+ |+|.|+++.+.+ ..+++|+|++.... +.+++.+.+
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------- 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------- 65 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-----------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-----------
Confidence 468999999999997 5789999999999 999999999988 47899999986554 334443332
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
..+.++.-. ..-.++++.++..+... .+.+++-.|== +...+ +.++++...+ +..+.+...
T Consensus 66 -~~v~iv~GG-----------~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~ 128 (221)
T PF01128_consen 66 -KKVKIVEGG-----------ATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPAL 128 (221)
T ss_dssp -TTEEEEE-------------SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEE
T ss_pred -CCEEEecCC-----------hhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEE
Confidence 124444311 13668899998888751 24455544433 44444 6777776544 244556666
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
+..+ .+...+++|.+.+..+.... +.---=-.|+.+.|.+..++.....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR~~l-------------------------~~~QTPQ~F~~~~l~~a~~~a~~~~ 177 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDRSKL-------------------------WAVQTPQAFRFELLLEAYEKADEEG 177 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETGGGE-------------------------EEEEEEEEEEHHHHHHHHHTHHHHT
T ss_pred eccc------cEEEEecCCcccccCCHHHe-------------------------eeecCCCeecHHHHHHHHHHHHhcC
Confidence 6544 34455557777766433221 1122335678888877765531111
Q ss_pred Cchhcc--cccccccccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 245 NDFGSE--IIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 245 ~~~~~~--~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
..+-.| ++.. .+.++...+-+..-.-|.+|+|+..|...+
T Consensus 178 ~~~tDdasl~~~--~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 178 FEFTDDASLVEA--AGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHHSSHHHHHHH--TTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCccCHHHHHHH--cCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 111111 1111 256777776665677899999999987655
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=103.47 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=89.9
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+.++.+||||||.|+||. .+|-|+|+.|+ ||+.++++.+..+++++++++++|........... ..+
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~--- 69 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLG--- 69 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCC---
Confidence 356889999999999998 89999999999 99999999999999999999999873322222211 111
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHc
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQS 155 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~ 155 (378)
+.++...+. ..|.+.+++.+....... .+-++++.||+ +...++..+++.+..+
T Consensus 70 ----~~~v~npd~--------~~Gls~Sl~ag~~a~~~~----~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 ----VTVVVNPDY--------AQGLSTSLKAGLRAADAE----GDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred ----eEEEeCcch--------hhhHhHHHHHHHHhcccC----CCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 333332222 258999999998888641 25899999999 3334488888776655
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-11 Score=101.83 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=133.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecC-hhhHHHHHHhhccCCCCc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~-~~~i~~~l~~~~~~~~~~ 83 (378)
++.+.+||||||.|+||. ...||.+++++|+ |||+|+++.+..+ .+++|+|+++.. ...+.++.. + .
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~--~--- 70 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L--S--- 70 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h--c---
Confidence 356889999999999998 5899999999999 9999999999885 579999999763 333444332 1 0
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti 161 (378)
....++++.-. ..-.++++.++..+.. ...+.+|+.-+== ++..+ ++++++.. .+..+.+
T Consensus 71 --~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai 132 (230)
T COG1211 71 --ADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAI 132 (230)
T ss_pred --cCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhh--ccCCcEE
Confidence 01124444321 1367889999888863 1135555554433 44444 67777432 3344556
Q ss_pred EEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
.+.+..+ -....++++.+.+.......... --=-.|+.+.|.+..++.+
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~l~~~-------------------------QTPQ~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSGLWAA-------------------------QTPQAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhhhhhh-------------------------hCCccccHHHHHHHHHHHH
Confidence 6666543 23334445666655433322111 0112356666766655543
Q ss_pred CCCCchhcc--cccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 242 PTANDFGSE--IIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 242 ~~~~~~~~~--~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
....++-.| ++.+ .+.++..+.-+-+-..|.+|+|+..|+..+.
T Consensus 182 ~~~~~~tDdas~~e~--~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 182 AEGREITDDASAIEK--AGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred hcCCCcCCHHHHHHH--cCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 222222111 1111 1557777666667789999999999887654
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-12 Score=93.84 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=49.7
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
|++++.| +++.+.+|+||++|.|+ ++.|.+|+|+++++|+++++|.+|++++++.|+++|.+..+++|.
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~ 72 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGS 72 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECC
Confidence 4556666 45666677777777777 677777777777777777777777777777777777777777764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=106.37 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=85.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+.+||||||.|+||. .||.|++++|+ |||+|+++.+.+.++++++|++++..+.+. .+.+.. .. . .
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~-~~-~--~--- 66 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYL-LA-D--E--- 66 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhh-hc-C--C---
Confidence 358999999999997 58999999999 999999998888899999999977654321 111110 00 0 0
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
.+.++..... ..|.+.+++.++..+... ..+.+++++||+ ++..+ +..+++........
T Consensus 67 ~~~~~~~~~~--------~~G~~~si~~gl~~~~~~---~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 67 RIMLVCCRDA--------CEGQAHSLKCGLRKAEAM---GADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CeEEEECCCh--------hhhHHHHHHHHHHHhccC---CCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 1222211111 248889999998876321 147899999999 66666 67777765444443
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-12 Score=107.18 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. ++++|+|++++.... +.... ++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~--------~~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAG--------FG-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhcc--------CC--
Confidence 468999999999996 259999999999 999999999976 589998888654322 21111 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.++..... ...|++++++.++..++ .+.+++++||. +.+.+ +..+++.+.+.++.
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 122222111 12589999999988774 47899999999 66666 67777765443433
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=95.17 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=62.2
Q ss_pred cCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 296 YDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
+.+++.+ .++.|++++.|+++.+++|+|+++|.|+ ++.|.+|+|+++++||++++|++|+|+++++|++++.+...
T Consensus 4 i~~~~~i-~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 4 IGRRGEV-KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ecCCCEE-EeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 3445555 4577888888887888888899999998 78888899999999999999988999989888888887643
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=89.82 Aligned_cols=68 Identities=18% Similarity=0.045 Sum_probs=55.1
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee-eeEe
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC-SVIC 375 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~-~~~~ 375 (378)
|++++.| +++.+.+|+||++|.|+ ++.|.+|+|+++++|++++.|.+|++++++.|+.++.+.. ++++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig 72 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIG 72 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEEC
Confidence 4566777 56777778888888888 7888888888888888888888888888888888888877 7765
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=94.17 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=61.0
Q ss_pred Ccee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEe
Q 017030 311 PSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 311 ~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~ 375 (378)
|++| +++.|++|+||++|.|+++.|++|+||++++|+++++|.+|++++++.|+++|.++.|++.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig 66 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIID 66 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEEC
Confidence 4667 6888999999999999989999999999999999999999999999999999999999885
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=103.67 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=77.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecCh--hhHHHHHHhhccCCCCcccCC
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++... +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~-----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL-----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc-----C-----
Confidence 7999999999993 5999999999 99999999999987 899999987664 4555554321 1
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEE
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~t 160 (378)
+.++.... .+.......+....+ .+.++++.||+ +++.+ ++.+++.+...+.+.+
T Consensus 65 --v~~v~~~~----------~~~l~~~~~~~~~~~------~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------EDVLGRYYQAAEEYN------ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hhHHHHHHHHHHHcC------CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22221111 011111222221121 47899999999 55555 8899988876655544
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=110.78 Aligned_cols=111 Identities=13% Similarity=0.181 Sum_probs=77.1
Q ss_pred ccccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCc
Q 017030 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (378)
Q Consensus 4 ~~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~ 83 (378)
.++.++.+||||||.|+||+ .+|+|+|+.|+ |||+|+++.+.. .+.+|+|+++..... .+..
T Consensus 170 ~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~---~~~~-------- 231 (369)
T PRK14490 170 AEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAE---QYRS-------- 231 (369)
T ss_pred cccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhh---HHhh--------
Confidence 34577899999999999997 59999999999 999999999976 478888877543211 1111
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHH
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~ 150 (378)
++ +.++.+... ..|...++..+..+.. .+.++++.||+ +...+ +..+++
T Consensus 232 -~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~ 282 (369)
T PRK14490 232 -FG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVE 282 (369)
T ss_pred -cC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHH
Confidence 11 223322221 1377778887766543 36899999999 55655 556555
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-11 Score=86.46 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=63.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWK 366 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~ 366 (378)
.+.+++.+. ++.|++++.| .++.+++|+|+++|.|+ ++.+.+|+|++++.|+++++|.+||+++++.|..+
T Consensus 7 ~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~ 79 (81)
T cd04652 7 QVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAG 79 (81)
T ss_pred EECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCC
Confidence 344555554 6788999999 67999999999999999 89999999999999999999999999999999875
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-11 Score=85.66 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=52.3
Q ss_pred CCCcee-eCcee-eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee-eeEe
Q 017030 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC-SVIC 375 (378)
Q Consensus 309 ~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~-~~~~ 375 (378)
.++++| .++.+ .+++|+++|.|+ ++.|.+|+|+++++|++++.|.+|++++++.++.+|.+.. ++++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig 73 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLG 73 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEEC
Confidence 455666 45555 478888888887 7888888888888888888888888888888888888877 6654
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-11 Score=110.49 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=44.3
Q ss_pred cCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 305 SRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
.++||.+|.| ++++|.||+|.+|++|| |+.|+|||||+++.||+|+.++||+|+++-+|+-+-.-+++|
T Consensus 351 ~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev 421 (433)
T KOG1462|consen 351 RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGGEV 421 (433)
T ss_pred eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccccE
Confidence 4556666666 56666667777777776 666677777777777777777777777666666444444443
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=85.02 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee-eeeE
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL-CSVI 374 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~-~~~~ 374 (378)
|++++.| +++.+.+|+|+++|.|+ ++.|.+|+|+++++|+++++|.+++|+++++|+.+|.+. ++++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v 71 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLI 71 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEE
Confidence 5777888 67888899999999999 899999999999999999999999999999999999987 4554
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=102.46 Aligned_cols=218 Identities=18% Similarity=0.266 Sum_probs=127.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeec---CeeeeeeeehhhhhhcC-----------CcEEEEEee-cChhhHH
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINSG-----------INKVYILTQ-YNSASLN 70 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~~g-----------i~~I~iv~~-~~~~~i~ 70 (378)
..++.+||||||.|||| +...||+|+||+ |+ |++++.++.+.+.+ .-.++|.++ +..+++.
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 45789999999999999 477899999998 68 99999999998742 124557776 7778899
Q ss_pred HHHHhhccCCCC---ccc-CCceEEEeccccCC--CcCC--CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeE
Q 017030 71 RHLARAYNYGSG---VTF-GDGCVEVLAATQTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL 140 (378)
Q Consensus 71 ~~l~~~~~~~~~---~~~-~~~~i~i~~~~~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~ 140 (378)
+++.+...++-. ..+ ....+-.+...... .+.+ ...|.|.|+....... .+++....+.+.+.+.+.|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 998764322211 000 00001011000000 0001 1235678776654432 233322344689999999995
Q ss_pred Ee-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE-CCCCCEEEEEecCCccchhcccccchhccccccccccCc
Q 017030 141 YR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 218 (378)
Q Consensus 141 ~~-~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (378)
.. .---.++-++.++++++.+-+.+...+ .+.-|.+.. |..-.++++.|-|...... ...++.+ .-
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~~g~~~vvEysel~~~~~~~-~~~~g~l----------~f 236 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLVDGKPQVVEYSEISDELAEK-RDADGEL----------QY 236 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEECCeEEEEEeecCCHHHHhc-cCcCCcE----------ec
Confidence 43 223467788888999998877665432 233454443 3333466666655433210 0000100 11
Q ss_pred ceeeeeEEEEeHHHHHHHHhh
Q 017030 219 YIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 219 ~~~~~Giy~~~~~~l~~~l~~ 239 (378)
+..|..+.+|+.++++++++.
T Consensus 237 ~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 237 NAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred ccchHhhheeCHHHHHHHHhh
Confidence 234556778999988877643
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=99.30 Aligned_cols=113 Identities=24% Similarity=0.319 Sum_probs=80.4
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+++|.+||||||.++|| .+|+|++++|+ ||++|+++.|....- .++|....+.+. +. .+
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~----------~~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YA----------EF 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hh----------cc
Confidence 46799999999999999 68999999999 999999999998755 566665554332 11 11
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcC
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSG 156 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~ 156 (378)
+ +.++.+.... .|...+++.++..+. .+.+++++||+ +...+ +..+.....+.+
T Consensus 61 g---~~vv~D~~~~--------~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELPG--------FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCCC--------CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 2233322221 288999999988876 48999999999 55665 455555444333
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=82.82 Aligned_cols=69 Identities=20% Similarity=0.095 Sum_probs=61.3
Q ss_pred cCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
+.+.+.+.+ +.|+++++| +++.+.+|+|+++|.|+ ++.+.+|+|++++.|+++++|.+ ++++++++++|
T Consensus 8 I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 8 IGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred ECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 344555555 888999999 68999999999999999 89999999999999999999999 99999998875
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=96.07 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=125.4
Q ss_pred eEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhh--------cCCcEEEEEeecChhhHHHHHHhhcc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN--------SGINKVYILTQYNSASLNRHLARAYN 78 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~--------~gi~~I~iv~~~~~~~i~~~l~~~~~ 78 (378)
.+|+||||.||||+ .+.||+|+||+ |+ |+|++.++++.+ .++..+++...+..+++.+++.+..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 57999999999996 78999999999 99 999999999976 2456666666778888999998643
Q ss_pred CCCCcc--cCCceEEEecccc-C-CCcCC--CccccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEE-ecCHHHHH
Q 017030 79 YGSGVT--FGDGCVEVLAATQ-T-PGEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY-RMDYMDFV 149 (378)
Q Consensus 79 ~~~~~~--~~~~~i~i~~~~~-~-~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~-~~d~~~~l 149 (378)
+..+.. |..+.+-.+.... . ..+.. ...+.|.|+.+.... ..++.....+...+.+.+.|.+. ...--.++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 111110 1100000111000 0 00011 123568887765432 12332223346889999999944 44123467
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCC--EEEEEecCCccchhccc-ccchhccccccccccCcceeeeeEE
Q 017030 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMA-VDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
-.+...+.++.+-+.+.... ...-|.+...++|+ ++++.|-|......... .+.+ ..-..+....|+..+
T Consensus 157 G~~~~~~~~~~~kvv~K~~~-d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~------~~~~~~~~~~n~~~~ 229 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRN-EESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPK------DIDDAPFFLFNTNNL 229 (266)
T ss_pred HHHHHcCCCEEEEEEECCCC-CCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcC------CCCceeeccceEEEE
Confidence 77778888888776665432 23345544422254 56666654332110000 0000 000012356789999
Q ss_pred EEeHHHHHHHHh
Q 017030 227 LFKKEILLNLLR 238 (378)
Q Consensus 227 ~~~~~~l~~~l~ 238 (378)
+|+-+.+.+.++
T Consensus 230 ~~~l~~l~~~~~ 241 (266)
T cd04180 230 INFLVEFKDRVD 241 (266)
T ss_pred EEEHHHHHHHHH
Confidence 999999987765
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-10 Score=104.95 Aligned_cols=69 Identities=16% Similarity=0.020 Sum_probs=65.6
Q ss_pred EccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
-.++.+..+|.|.+ +|+||+|+.|++|+ +|.|++|+|+++|+||+||+|+++||..||+|++|..|.++
T Consensus 294 v~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 294 VSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred EeeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 56788899999988 99999999999999 99999999999999999999999999999999999999876
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-10 Score=110.77 Aligned_cols=57 Identities=30% Similarity=0.332 Sum_probs=53.6
Q ss_pred eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 320 VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 320 ~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
.+.+||.++.|| |+.|.||+||.||+||.|++|++|.|++||+|++||.|-.++||.
T Consensus 332 ~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d 389 (673)
T KOG1461|consen 332 ANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICD 389 (673)
T ss_pred ceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeec
Confidence 478899999999 899999999999999999999999999999999999999999995
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=110.17 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=55.4
Q ss_pred ceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEe
Q 017030 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~ 375 (378)
+.+.+|+||+||+|+++.|++|+||++|+||++|+|++|||+++|.|+++|.+..|+|-
T Consensus 323 ~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~ 381 (425)
T PRK00725 323 GMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVID 381 (425)
T ss_pred ceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEEC
Confidence 46789999999999889999999999999999999999999999999999999998873
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-09 Score=100.39 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=124.4
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhhc------------C-CcEEEEEe-ecChhh
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS------------G-INKVYILT-QYNSAS 68 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~~------------g-i~~I~iv~-~~~~~~ 68 (378)
..++.+||||||.||||+ ...||+|+||+ |+ |+++++++++... + .-.++|.+ .+..+.
T Consensus 104 ~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 104 KGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred cCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 456999999999999996 67999999994 89 9999999999874 1 12455655 677788
Q ss_pred HHHHHHhhccCCCC---cc-cCCceEEEeccc-cCC--CcCC--CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcC
Q 017030 69 LNRHLARAYNYGSG---VT-FGDGCVEVLAAT-QTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (378)
Q Consensus 69 i~~~l~~~~~~~~~---~~-~~~~~i~i~~~~-~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~g 137 (378)
+++++.++..++-. .. |....+-.+... ... ...+ ...|.|.|+....... .+++....+.+.+.+.+.
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 99998754222211 00 000000000000 000 0001 1234577766654322 133222344689999999
Q ss_pred CeEEecC-HHHHHHHHHHcCC-cEEEEEeecCCCCCCcceEEEE-CCCCCEEEEEecCCccchhcccccchhcccccccc
Q 017030 138 DHLYRMD-YMDFVQNHRQSGA-DITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (378)
Q Consensus 138 D~~~~~d-~~~~l~~h~~~~~-~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (378)
|.+.... --.++-++.++++ ++.-.+.+... .+.-|.+.. +..-.|+.+.|-+.......-....
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g---------- 327 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNNDELLTG---------- 327 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcccccCC----------
Confidence 9975433 3356677777777 65554444332 344566543 3223678888765432210000000
Q ss_pred ccCcceeeeeEEEEeHHHHHHHHh
Q 017030 215 EEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 215 ~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
.......++..++|+.++|.++.+
T Consensus 328 ~l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 328 ELAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred eecccccceEEEEEEHHHHHHHhh
Confidence 011245688999999999987754
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-10 Score=107.35 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=55.3
Q ss_pred eeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 318 KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 318 ~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
.+++|+||+||.|+++.|.+|+||++|+||++|+|++|||+++++|+++|.+..|++|.
T Consensus 312 ~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~ 370 (407)
T PRK00844 312 SAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDK 370 (407)
T ss_pred eEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECC
Confidence 57899999999998899999999999999999999999999999999999999999874
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=79.35 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=60.7
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
.+.+...+.+.+.|++++.| .+++|++|+|+++|.|+ ++.+.+|+++++++|++++++.+ +++++++++++
T Consensus 7 ~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 7 KIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD 80 (80)
T ss_pred EECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence 34455556677778888888 78999999999999999 89999999999999999999999 88888887763
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.8e-10 Score=104.54 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=70.7
Q ss_pred ccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
++.+++.+ +++.|+++|.|+ ..+++|+|+++|.|+ +|.|++|+|+++|.|+++++|++|||+++++|+.+|.+.++.
T Consensus 280 ~i~~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~~ 357 (369)
T TIGR02092 280 YYAENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGTS 357 (369)
T ss_pred EEcCCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCCC
Confidence 44555555 678889999996 468999999999999 999999999999999999999999999999999999999886
Q ss_pred Eee
Q 017030 374 ICM 376 (378)
Q Consensus 374 ~~~ 376 (378)
+|-
T Consensus 358 ~~~ 360 (369)
T TIGR02092 358 EQP 360 (369)
T ss_pred Ccc
Confidence 653
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=103.32 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=65.0
Q ss_pred ccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~ 371 (378)
++.+++.+ .++.|+++|.|.+ .+.+|+||++|.|+ +|.|++|+|+++|+||++++|.+|+|+++++|+.+|.+..
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 359 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGG 359 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcC
Confidence 44555555 4566777777753 57899999999999 8999999999999999999999999999999999999988
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=89.50 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=57.1
Q ss_pred CCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 299 TKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
.+.+.+.+.|++++.| .++.|. +++||++|.|+ ++.|.+|+|+++++|+.++.+.+|+|+++++|+.+|.+.
T Consensus 29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~ 103 (163)
T cd05636 29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITA 103 (163)
T ss_pred CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEc
Confidence 3334444555555555 466665 68999999999 899999999999999999999999999999999998873
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-09 Score=99.97 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=78.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
.++.+||||||.|+||. .+|+|+|+.|+ ||++|+++.+... +++|+|+++... .. +.. . .
T Consensus 159 ~~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~~----~-~----- 218 (346)
T PRK14500 159 TPLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GTP----L-E----- 218 (346)
T ss_pred CCceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--hh-hcc----c-c-----
Confidence 36789999999999997 69999999999 9999999888764 888988875421 11 100 0 0
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHH
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h 152 (378)
.+.++.+... ..|...+|+.++.... .+.+++++||+ +...+ +..+++.+
T Consensus 219 --~v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 --NLPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred --CCeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 0223332222 2589999999988754 35789999999 56655 66666654
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-09 Score=87.74 Aligned_cols=79 Identities=18% Similarity=0.053 Sum_probs=66.2
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
.+...+.+.+.+++++.| .++.+. +++||+||.|+ ++.|. +|+||++|.|+++++|.+|+|+++++|+.+|.+..|
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~s 88 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDS 88 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecC
Confidence 344555566667777777 566665 68999999998 89997 699999999999999999999999999999999888
Q ss_pred eEe
Q 017030 373 VIC 375 (378)
Q Consensus 373 ~~~ 375 (378)
++.
T Consensus 89 iIg 91 (163)
T cd05636 89 VLG 91 (163)
T ss_pred EEC
Confidence 875
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-09 Score=102.25 Aligned_cols=68 Identities=18% Similarity=0.046 Sum_probs=63.1
Q ss_pred ccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcC-------------------CCEECCCCEEeeeeeCCCCeE
Q 017030 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI-------------------RSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~-------------------~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
..+.|+++|.|+++.|++|+||+||+|| ++.|.+|+|+. ++.||+||.|++|||+++|.|
T Consensus 307 ~~~~ig~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i 386 (429)
T PRK02862 307 TESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARI 386 (429)
T ss_pred EeCEECCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEE
Confidence 3578899999988999999999999999 89999999986 799999999999999999999
Q ss_pred eeeeeeee
Q 017030 364 IWKCSSLC 371 (378)
Q Consensus 364 ~~~~~~~~ 371 (378)
+++|.+..
T Consensus 387 ~~~~~~~~ 394 (429)
T PRK02862 387 GNNVRIVN 394 (429)
T ss_pred CCCcEEec
Confidence 99999964
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-09 Score=98.60 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=66.6
Q ss_pred ccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++++.+ ...++.|+++|.|++..+.+|+||+||.|+ +|.|.+|+|++++.||++++|++|+|+++++|+.++.+.
T Consensus 285 ~i~~~~-~i~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 285 FVDSDA-QVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EecCCC-EEECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 444554 346688999999976689999999999999 899999999999999999999999999999999998874
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=84.21 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=65.4
Q ss_pred ccccCCCCcEEccCCCCCCcee-eCceeeee----EEecCcEEc-ceEEee-----ceEcCCCEECCCCEEeeeeeCCCC
Q 017030 293 FSFYDATKPIYTSRRNLPPSKI-DDSKIVDS----IISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKVSPANPLC 361 (378)
Q Consensus 293 ~~~~~~~~~i~~~~~i~~~~~i-~~~~i~~s----~Ig~~~~I~-~~~i~~-----SiI~~~~~Ig~~~~i~~sIi~~~~ 361 (378)
..++++++.+...+.+++++.| .++.|..+ .||++|.|+ ++.|.. ++||++++|++++++.+++|++++
T Consensus 6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 85 (154)
T cd04650 6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV 85 (154)
T ss_pred CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence 3466777778888888888888 57777764 899999998 888875 789999999999999999999988
Q ss_pred eEeeeeeeee
Q 017030 362 RRIWKCSSLC 371 (378)
Q Consensus 362 ~~~~~~~~~~ 371 (378)
.|+.+|.+..
T Consensus 86 ~Ig~~~~i~~ 95 (154)
T cd04650 86 IVGMGAILLN 95 (154)
T ss_pred EEcCCCEEeC
Confidence 8888888754
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=84.50 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=51.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEE-----eeceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i-----~~SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++++.+..++.|++++.| .++.|.. +.||++|.|+ +|.| .+|+|+++++|++++.|.+++|++++.|
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~I 87 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALV 87 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEE
Confidence 44555566666666677766 5566653 5677777777 6666 5577777777777777777777777777
Q ss_pred eeeeeeee
Q 017030 364 IWKCSSLC 371 (378)
Q Consensus 364 ~~~~~~~~ 371 (378)
+.+|.+..
T Consensus 88 g~~~~I~~ 95 (155)
T cd04745 88 GMNAVVMD 95 (155)
T ss_pred CCCCEEeC
Confidence 66666543
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=86.90 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=57.1
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEE-----eeceEcCCCEECCCCEEeeeeeCCCCe
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKVSPANPLCR 362 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i-----~~SiI~~~~~Ig~~~~i~~sIi~~~~~ 362 (378)
.++++++.+..++.|++++.| .++.|. ..+||++|.|+ +|.| .+|+||++++||+++.|.+|+|++++.
T Consensus 15 ~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~ 94 (192)
T TIGR02287 15 AYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNAL 94 (192)
T ss_pred cEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCE
Confidence 356666667777777777777 566665 35677777777 6776 568888888888888888888888888
Q ss_pred Eeeeeeee
Q 017030 363 RIWKCSSL 370 (378)
Q Consensus 363 ~~~~~~~~ 370 (378)
|+.+|.+.
T Consensus 95 IG~ga~I~ 102 (192)
T TIGR02287 95 VGMNAVVM 102 (192)
T ss_pred ECCCcccC
Confidence 87776664
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=79.80 Aligned_cols=220 Identities=20% Similarity=0.226 Sum_probs=137.7
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCC-cEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGI-NKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi-~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
+++..|+|+|.|.+.|. .-|-+.+++|+ |||.|+++++.+++. ++|+|-+ +.+.|.+.-++. +....
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~y---gak~~ 68 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKY---GAKVF 68 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHHh---Ccccc
Confidence 45678999999999999 47999999999 999999999999875 6665544 455555554332 22110
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~~ti~ 162 (378)
+. + -.-+..+ ...|.+++..+.+.+... .+.++++++-. +. ..+++++++.+.+++.+-.+.
T Consensus 69 ~~-R-p~~LA~D----------~ast~~~~lh~le~~~~~----~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 69 LK-R-PKELASD----------RASTIDAALHALESFNID----EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred cc-C-ChhhccC----------chhHHHHHHHHHHHhccc----cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 10 0 0001100 123445666666666431 34477777776 44 456999999999988887777
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
+.+.+..+ |-.... ++|.+..+.+.+.... +.+.....+..+..+|+++.+.|.+ .
T Consensus 133 a~e~e~~p---~k~f~~-~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~--- 188 (228)
T COG1083 133 AVECEHHP---YKAFSL-NNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---N--- 188 (228)
T ss_pred Eeecccch---HHHHHh-cCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---c---
Confidence 77765421 222222 3477888877664321 1111123466788999999998742 1
Q ss_pred CCCchhcccccccccccceEEEEec-ceEEecCCHHHHHHHHHhccc
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~ 288 (378)
..-| ......|..+ ....||++..|+..|+..+..
T Consensus 189 -~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 -DCFF----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred -Ccee----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 2233444444 457899999999999887754
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.6e-07 Score=86.16 Aligned_cols=335 Identities=15% Similarity=0.159 Sum_probs=175.3
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecC-eeeeeeeehhhhhh----cCCc-EEEEEeecC-hhhHHHHHHhhccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNY 79 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g-~~pli~~~l~~l~~----~gi~-~I~iv~~~~-~~~i~~~l~~~~~~ 79 (378)
.++.+|.||||.||||+ .+.||.|+|+.+ + ++++..++++.+ .|.+ -.+|-++.. .+...++++++-.+
T Consensus 78 ~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~ 153 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS 153 (469)
T ss_pred hcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC
Confidence 56789999999999998 789999999954 6 898888877654 3433 335555544 45688888754211
Q ss_pred CCCcc-cCCce-EEEeccccC----CCcC-CC-ccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEecCHHHHH
Q 017030 80 GSGVT-FGDGC-VEVLAATQT----PGEA-GK-RWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (378)
Q Consensus 80 ~~~~~-~~~~~-i~i~~~~~~----~~~~-~~-~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l 149 (378)
..... |.... ..+...... .+.. .. -.+.|.|+....... .+++....+.+.+.+.+.|.+...-=-.++
T Consensus 154 ~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~l 233 (469)
T PLN02474 154 NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKIL 233 (469)
T ss_pred ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHH
Confidence 11111 11000 011100000 0000 01 124566665443322 122222334689999999996543334678
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcceEEEECCCC--CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEE
Q 017030 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (378)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~ 227 (378)
.+|.++++++++=+++..... ..-|.+.. .+| +++++.+-|...... +. + .......|+..++
T Consensus 234 g~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~-f~-~-----------~~kf~~fNtnn~w 298 (469)
T PLN02474 234 NHLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNE-FK-S-----------IEKFKIFNTNNLW 298 (469)
T ss_pred HHHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHh-hc-c-----------cccceeeeeeeEE
Confidence 888889999888776544321 22354433 345 567777766542210 00 0 0123567999999
Q ss_pred EeHHHHHHHHhhhCCCCC------ch-hccccc------ccccc-cceEEEEec-ceEEecCCHHHHHHHHHhcccCCCC
Q 017030 228 FKKEILLNLLRWRFPTAN------DF-GSEIIP------ASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPM 292 (378)
Q Consensus 228 ~~~~~l~~~l~~~~~~~~------~~-~~~~l~------~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~~~~ 292 (378)
|+-+.++++++....... .. ...+++ +++.- ....++..+ ..|..+.+..|++.+..++..-..+
T Consensus 299 ~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~ 378 (469)
T PLN02474 299 VNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDG 378 (469)
T ss_pred EEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccC
Confidence 999999887653211000 00 000111 11110 122233222 3478888888888777765433211
Q ss_pred cc------ccCCCCcEEccC-----------CCCCCcee--eCcee-eeeEEecCcEEcceEEeeceEcCCCEECCCCEE
Q 017030 293 FS------FYDATKPIYTSR-----------RNLPPSKI--DDSKI-VDSIISHGSFITSSFIEHSVVGIRSRINANVHL 352 (378)
Q Consensus 293 ~~------~~~~~~~i~~~~-----------~i~~~~~i--~~~~i-~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i 352 (378)
.. ..+....|.-+. .=+-|+.+ +..+| .+...|+|+++.|.++...-=|+...|-+|+.+
T Consensus 379 ~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l 458 (469)
T PLN02474 379 FVIRNKARTNPSNPSIELGPEFKKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVL 458 (469)
T ss_pred eEEecCcccCCCCCcEEECcccccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEe
Confidence 10 111111111000 00222222 23344 378889999988533322222445678888888
Q ss_pred eeeeeCCC
Q 017030 353 KVSPANPL 360 (378)
Q Consensus 353 ~~sIi~~~ 360 (378)
+|.++..+
T Consensus 459 ~~~~~~~~ 466 (469)
T PLN02474 459 ENKDINGP 466 (469)
T ss_pred cceeeccc
Confidence 88877655
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=86.09 Aligned_cols=79 Identities=22% Similarity=0.094 Sum_probs=58.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
.+.+.+.+.+.+.|+++++| .++.|.++.||++|.|+ ++.+.+|+|+++++|++++.|. +++|+++++|++++.+..
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 44455566666777777777 67778888888888888 7888888888888888888886 577777777777666544
Q ss_pred ee
Q 017030 372 SV 373 (378)
Q Consensus 372 ~~ 373 (378)
++
T Consensus 103 s~ 104 (193)
T cd03353 103 ST 104 (193)
T ss_pred ce
Confidence 33
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=72.51 Aligned_cols=69 Identities=19% Similarity=-0.012 Sum_probs=56.7
Q ss_pred cCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIW 365 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~ 365 (378)
+.+.+.+. ++.+++++.| +++.+.+|+|+++|.|+ ++.|.+|+|+++++|++++.|. ++++++++.|++
T Consensus 8 I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 8 IGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred ECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 34445554 5778888888 67899999999999999 8999999999999999998887 477777777654
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-08 Score=73.80 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=54.6
Q ss_pred CcEEccCCCCCCcee-eCceee-eeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 300 KPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
..+...+.+++.+.| +++.|. +++||++|+|+ +.|++|+|+++++|++++.|.+++|++++.|+.++..
T Consensus 24 ~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig-~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~ 94 (101)
T cd05635 24 AVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIG-GEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNN 94 (101)
T ss_pred CEEeCCCEECCCCEECCCCEEeCcCEECCCCEEC-CEECccEEcCCCEecCcCEEeeeEECCCCEECCCcee
Confidence 334444445555555 466665 58999999997 5789999999999999999999999999999998754
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.5e-08 Score=79.63 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=50.3
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEEee-----ceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i~~-----SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++.+.+..+..+++++.| +++.|.. ++||++|.|+ ++.|.+ |+||+++.|+.+++|.+++|++++.|
T Consensus 7 ~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~I 86 (153)
T cd04645 7 FIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLI 86 (153)
T ss_pred EECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEE
Confidence 45556666666666666666 4555543 4777777777 677766 37777777777777777777776666
Q ss_pred eeeeeee
Q 017030 364 IWKCSSL 370 (378)
Q Consensus 364 ~~~~~~~ 370 (378)
+.++.+.
T Consensus 87 g~~~~v~ 93 (153)
T cd04645 87 GMGAIIL 93 (153)
T ss_pred CCCCEEc
Confidence 6555554
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=88.29 Aligned_cols=101 Identities=18% Similarity=0.028 Sum_probs=51.6
Q ss_pred eEEecCCHHHHHHHHHhcccCCC-CccccCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEE-eeceEcCC
Q 017030 269 YWEDIGTIRSFFEANLALTAHPP-MFSFYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI-EHSVVGIR 343 (378)
Q Consensus 269 ~~~~i~t~~~~~~a~~~~l~~~~-~~~~~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i-~~SiI~~~ 343 (378)
.+.-+++|...+..-..++.+.+ ....++|.+.+.+++.++++++| +++.| .++.||++|.|+ ++.| .++.||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 46667888766554445553321 12345555556555555555555 33333 234444444444 4444 34555555
Q ss_pred CEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 344 SRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 344 ~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
|+|++++.|. +|+|++++.|+.+|.|
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEE
Confidence 5555555554 4555555555555555
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.2e-08 Score=82.29 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=53.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEE-----eeceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i-----~~SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++++.+..++.|++++.| .++.|.. .+||++|.|+ +|.| .+|+|+++++||.++.|.+|+|++++.|
T Consensus 18 ~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~I 97 (196)
T PRK13627 18 FVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALV 97 (196)
T ss_pred EECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEE
Confidence 55666666777777777777 5666643 2444444444 4443 4688888888888888888888888888
Q ss_pred eeeeeeee
Q 017030 364 IWKCSSLC 371 (378)
Q Consensus 364 ~~~~~~~~ 371 (378)
+.++.+..
T Consensus 98 G~ga~V~~ 105 (196)
T PRK13627 98 GMNSVIMD 105 (196)
T ss_pred CcCCccCC
Confidence 88777643
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.9e-08 Score=85.87 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=56.1
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEEe-----------eceEcCCCEECCCCEEeeee
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIE-----------HSVVGIRSRINANVHLKVSP 356 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i~-----------~SiI~~~~~Ig~~~~i~~sI 356 (378)
.++.+++.+...+.|++++.| .++.|.. ++||++|.|+ ++.|. +|+||++|+||.+|.|.+|+
T Consensus 59 ~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~ 138 (269)
T PLN02296 59 AFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCT 138 (269)
T ss_pred CEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCE
Confidence 355666666666777777777 5666653 4688888887 67763 57888888888888888888
Q ss_pred eCCCCeEeeeeeee
Q 017030 357 ANPLCRRIWKCSSL 370 (378)
Q Consensus 357 i~~~~~~~~~~~~~ 370 (378)
|++++.|+.+|.+.
T Consensus 139 Igd~v~IG~ga~I~ 152 (269)
T PLN02296 139 VEDEAFVGMGATLL 152 (269)
T ss_pred ECCCcEECCCcEEC
Confidence 88877777777664
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-08 Score=84.87 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=43.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEE-----------eeceEcCCCEECCCCEEeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----------EHSVVGIRSRINANVHLKVSPA 357 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i-----------~~SiI~~~~~Ig~~~~i~~sIi 357 (378)
++.+++.+..++.|+.++.| .++.++. ..||++|.|+ +|.| .+++||++|+||++|.|.+|+|
T Consensus 67 ~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~I 146 (246)
T PLN02472 67 YVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTI 146 (246)
T ss_pred EECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEE
Confidence 44445555555555555555 3444331 3455555555 4444 2467777777777777777777
Q ss_pred CCCCeEeeeeee
Q 017030 358 NPLCRRIWKCSS 369 (378)
Q Consensus 358 ~~~~~~~~~~~~ 369 (378)
++++.|+.+|.+
T Consensus 147 gd~v~IG~~svI 158 (246)
T PLN02472 147 EPECIIGQHSIL 158 (246)
T ss_pred cCCCEECCCCEE
Confidence 777777666655
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=81.94 Aligned_cols=68 Identities=12% Similarity=-0.053 Sum_probs=51.8
Q ss_pred EccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 303 YTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
.+.+.+++++.| +.+.+. ++.||+||.|+ ++.|.+++|+++++|++++.|.+|+|+++++|+.+|.+.
T Consensus 13 ~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~ 83 (193)
T cd03353 13 DGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLR 83 (193)
T ss_pred cCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEc
Confidence 344455555555 355554 67888888888 788888888888888888888888888888888887775
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=90.17 Aligned_cols=207 Identities=22% Similarity=0.293 Sum_probs=118.9
Q ss_pred CeEEEEcCCe-EEecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCC---------CEEEEEecCCccch--
Q 017030 130 EDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDL-- 197 (378)
Q Consensus 130 ~~~lv~~gD~-~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ek~~~~~~-- 197 (378)
.-++|..+|. +...+ ...+. + .+++++++..+.+..-..++|+...|+++ .+.++..||..+.-
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 3579999994 33333 12222 1 23678888888776556889999999888 78889999987652
Q ss_pred -hcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC----------------CCchhcccccccccc--
Q 017030 198 -KAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT----------------ANDFGSEIIPASANE-- 258 (378)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~----------------~~~~~~~~l~~l~~~-- 258 (378)
.+...+ ...+.++|++.|+.+..+.++...... ..++..|++..|..+
T Consensus 130 ~~av~~~-------------~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~~~t 196 (414)
T PF07959_consen 130 SGAVLPD-------------GNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGPDAT 196 (414)
T ss_pred CCcccCC-------------CcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcCCcc
Confidence 122211 234568999999998777765432110 112233455444422
Q ss_pred ------------------------------cceEEEEec-ceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCC
Q 017030 259 ------------------------------QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRR 307 (378)
Q Consensus 259 ------------------------------~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~ 307 (378)
.++.+...+ +.|+=+||-.+|+.-...- +... +. ...+.....
T Consensus 197 ~e~~~~~~~~~~~~~~l~~aR~~l~~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~-~~-~~~~~~~~~ 270 (414)
T PF07959_consen 197 EEYPENTSNVLKEESELREARQKLWKLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELG-IM-RRKFSHSPA 270 (414)
T ss_pred ccCccccCCCcchhHHHHHHHHHHHHHhhhccccccccCCceEEEecCCHHHHHhhccC----cccc-cc-eeeeecccc
Confidence 122222222 3445556655544432211 0000 00 000111010
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCC
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPL 360 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~ 360 (378)
..+..+ .++.|.||+|..++.|+ ++.|++|.|+.+++||++|.|.++-+...
T Consensus 271 -~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 271 -TTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred -ccccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 112223 46678888888888888 78888888888888888888888755543
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=82.27 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=56.7
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~ 371 (378)
+++++.| .++.+.++.||+||.|+ +|.|.+|+||++++|++++.|.+++||++|.|+++|.+..
T Consensus 5 ~~~~~~I~~~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 5 LSPEPTLHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred cCCCCeECCCcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 3556666 56777889999999999 8999999999999999999999999999999999998864
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=92.94 Aligned_cols=64 Identities=5% Similarity=-0.014 Sum_probs=46.8
Q ss_pred CCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 306 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+.|+.++.| .++.|. +|+||++|.|| ++.+.+++|++++.|+.++.+.+++|++++.|+.++.+
T Consensus 304 ~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~ 370 (446)
T PRK14353 304 AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTIT 370 (446)
T ss_pred cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceee
Confidence 445555555 355554 78888888888 78888888888888888888877777777777776543
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-07 Score=77.17 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=24.8
Q ss_pred EecCcEEc-ceEEeeceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeee
Q 017030 324 ISHGSFIT-SSFIEHSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 324 Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~ 370 (378)
||++|.|+ ++.+.+++||++|.||.+|.| .+++|++++.|+.+|.+.
T Consensus 69 IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~ 117 (164)
T cd04646 69 IGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLP 117 (164)
T ss_pred ECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEEC
Confidence 45555554 455555555555555555555 335555555555555443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=77.29 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=35.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee-----eeEEecCcEEc-ceEEe-----eceEcCCCEECCCCEEee-eeeCCCC
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKV-SPANPLC 361 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~-----~s~Ig~~~~I~-~~~i~-----~SiI~~~~~Ig~~~~i~~-sIi~~~~ 361 (378)
++++.+.+..+..+++++.| +++.|. ++.||++|.|+ ++.+. ++.||+++.|+.++.|.+ ++|++++
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~ 89 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNC 89 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCC
Confidence 33444444444444444444 344432 24455555555 44442 334444444444444443 4444444
Q ss_pred eEeeeeeeeeee
Q 017030 362 RRIWKCSSLCSV 373 (378)
Q Consensus 362 ~~~~~~~~~~~~ 373 (378)
.|+.+|.+..++
T Consensus 90 ~Ig~~~~I~~~~ 101 (167)
T cd00710 90 FIGFRSVVFNAK 101 (167)
T ss_pred EECCCCEEECCE
Confidence 444444444333
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=91.20 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=60.3
Q ss_pred CCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcC----------------C---CEECCCCEEeeeeeCCCCeEee
Q 017030 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI----------------R---SRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 306 ~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~----------------~---~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.|+++|.|+++.|++|+|++||.|+ +|.|.+|+|+. + ++||++|+|++++|++++.|++
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~ 395 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGK 395 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECC
Confidence 78899999998899999999999999 89999999977 3 3899999999999999999999
Q ss_pred eeeee
Q 017030 366 KCSSL 370 (378)
Q Consensus 366 ~~~~~ 370 (378)
+|.+.
T Consensus 396 ~~~i~ 400 (436)
T PLN02241 396 NVVII 400 (436)
T ss_pred CcEEe
Confidence 99885
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=92.63 Aligned_cols=49 Identities=22% Similarity=0.105 Sum_probs=23.4
Q ss_pred eEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++||+||.|+ ++.|.+|+||++|+|++++.|.+|+|+++++|+++|++.
T Consensus 280 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~ 329 (451)
T TIGR01173 280 VKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLR 329 (451)
T ss_pred eEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEEC
Confidence 4444444444 444444444444444444444444444444444444443
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=72.74 Aligned_cols=78 Identities=15% Similarity=0.030 Sum_probs=57.6
Q ss_pred cCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEE----------------eeceEcCCCEECCCCEEee-e
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI----------------EHSVVGIRSRINANVHLKV-S 355 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i----------------~~SiI~~~~~Ig~~~~i~~-s 355 (378)
+.+...+.+.+.|++++.| .++.+ .++.||++|.|+ ++.+ .+++|+++|.||.++.+.. +
T Consensus 7 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~ 86 (119)
T cd03358 7 IGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGV 86 (119)
T ss_pred ECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCc
Confidence 3344455556666777777 46666 478888888888 6654 4578899999999988865 8
Q ss_pred eeCCCCeEeeeeeeeeee
Q 017030 356 PANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 356 Ii~~~~~~~~~~~~~~~~ 373 (378)
.|++++.|+.++.+..++
T Consensus 87 ~ig~~~~i~~~~~v~~~i 104 (119)
T cd03358 87 TIGEYALVGAGAVVTKDV 104 (119)
T ss_pred EECCCCEEccCCEEeCcC
Confidence 888898888888877654
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-07 Score=82.20 Aligned_cols=97 Identities=15% Similarity=0.022 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEE-eeceEcCCCEEC
Q 017030 273 IGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI-EHSVVGIRSRIN 347 (378)
Q Consensus 273 i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig 347 (378)
..+|.-.+....+++.+. ....-+.+.+.+.+.+.+++++.| .++.| .++.||+||.|+ ++.| .++.||++++|.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 344555555555555432 212233444445555555554444 23333 234444444444 2111 134444444444
Q ss_pred CCCEEee-eeeCCCCeEeeeeee
Q 017030 348 ANVHLKV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 348 ~~~~i~~-sIi~~~~~~~~~~~~ 369 (378)
+||.|.. +.||++|.|+.++.|
T Consensus 158 ~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 158 PNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred CCCEEecCcEECCceEECCCCEE
Confidence 4444443 444444444444443
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-07 Score=92.15 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=48.3
Q ss_pred CCCCCCcee-eCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 306 RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+.|+++++| +++.+.+|+||++|.|| ++.|. +|+|+++|+||+++.|.+|+|++++++...+.+..++|
T Consensus 305 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~i 376 (456)
T PRK14356 305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEI 376 (456)
T ss_pred eEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEE
Confidence 334444444 35566677778888887 67775 67788888888888888888888888777776655554
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-07 Score=78.37 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=46.8
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK 353 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~ 353 (378)
.+++.+.+. .+.|++++.| .++.+.+|+||++|.|+ ++.+.+++||++|.|+++++|.
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 455666664 4778888888 57888899999999998 8888889999999999888874
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-06 Score=88.16 Aligned_cols=197 Identities=20% Similarity=0.246 Sum_probs=125.5
Q ss_pred eEEEEcCCeEEecC--HHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCC--CCEEEEEecCCccchhcccccchh
Q 017030 131 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 206 (378)
Q Consensus 131 ~~lv~~gD~~~~~d--~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~--~~v~~~~ek~~~~~~~~~~~~~~~ 206 (378)
-++|..||++..++ +.+ -..++++.+....+..-.+++|++..|.+ +.+..+..||..+.-.++..+
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~--- 224 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKT--- 224 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcC---
Confidence 68999999866554 111 22356666666655545678999999877 578888889987664443332
Q ss_pred ccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC------CCchhcccccccc----------cccceEEEEec-ce
Q 017030 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT------ANDFGSEIIPASA----------NEQFLKAYLFN-DY 269 (378)
Q Consensus 207 ~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~------~~~~~~~~l~~l~----------~~~~i~~~~~~-~~ 269 (378)
...+.++|+|+|+.+..+.++.....+ ..++-.|++..|- +..++...... +-
T Consensus 225 ----------~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 225 ----------HLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ----------CeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 235789999999999887666542211 1233345554433 23455666654 46
Q ss_pred EEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-c-eEEeeceEcCCCEEC
Q 017030 270 WEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-S-SFIEHSVVGIRSRIN 347 (378)
Q Consensus 270 ~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~-~~i~~SiI~~~~~Ig 347 (378)
|+-+||-++|+.....+..... ....+.....-..| .+.+.||+|..++.++ + ..|+||.|+.+++||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~------~~~~i~~~~~~~~~----~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVT------DQRRIMHRKVKPHP----AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhh------hhhhhhccccCCCC----ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 8889999988864433322110 00111111111111 2467899999999999 5 458899999999999
Q ss_pred CCCEEeeee
Q 017030 348 ANVHLKVSP 356 (378)
Q Consensus 348 ~~~~i~~sI 356 (378)
.++.|.++.
T Consensus 365 ~~~Iisgv~ 373 (974)
T PRK13412 365 SRSIITGVP 373 (974)
T ss_pred CCcEEeccc
Confidence 999998874
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-07 Score=87.97 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=39.1
Q ss_pred EEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-----eeeeCCCCeEeee
Q 017030 302 IYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-----VSPANPLCRRIWK 366 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-----~sIi~~~~~~~~~ 366 (378)
+.+++.+.+|++| +++.|.+|+|+.+|.|| +|.|.+|+|+++|+||++|+|. +|+|+++++|+.+
T Consensus 245 i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~ 316 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGV 316 (353)
T ss_pred cCCCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCC
Confidence 3445556666666 56666666666666666 6666666666666666666654 5555555555544
|
Alternate name: dTDP-D-glucose synthase |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.49 E-value=9e-07 Score=76.50 Aligned_cols=35 Identities=11% Similarity=-0.158 Sum_probs=16.1
Q ss_pred eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 337 HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
++.|+++|+||.++.|. ++.|++++.|+.++.++.
T Consensus 153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 34444455555444443 244444444444444443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.4e-07 Score=75.18 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=55.4
Q ss_pred CCCCCCcee-eCcee-----eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeee
Q 017030 306 RRNLPPSKI-DDSKI-----VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLC 371 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i-----~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~ 371 (378)
..|++++.| +++.| .+|+||++|.|+ ++.+.+++||++|.||.++.|.+ ++|++++.|+.++.+..
T Consensus 40 i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 40 IVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred EEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 456666666 46777 679999999999 89999999999999999999977 88899988888876653
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-07 Score=82.35 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=31.6
Q ss_pred eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEeee--------eeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKVS--------PANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~~s--------Ii~~~~~~~~~~~~~ 370 (378)
++.||+||.|+ ++.|. .++||++++|+++|.|..+ +|++++.+..+|++.
T Consensus 50 ~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~ 121 (262)
T PRK05289 50 HTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVA 121 (262)
T ss_pred ccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEEC
Confidence 46666666666 56664 3677777777777777653 456655555555554
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-07 Score=77.06 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCCCcee-eCcee-----eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 308 NLPPSKI-DDSKI-----VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 308 i~~~~~i-~~~~i-----~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
|++++.| +++.| .+|+||++|.|+ ++.|.+|+|+++|.||.++.|.+ ++|++++.|+.+|.+...
T Consensus 50 Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 50 LKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 3455555 45555 468899999998 78889999999999998888855 888888888888877654
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-07 Score=73.63 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=53.7
Q ss_pred CCCCCcee-eCceeee-----eEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 307 RNLPPSKI-DDSKIVD-----SIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~~-----s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
.|++++.| +++.|.+ ++||++|.|+ ++.+.+++|++++.|+.++.|. +++|++++.|+.++.+..+
T Consensus 40 ~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 40 RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred EECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 56667777 5677765 5999999999 8999999999999999999997 6888888888877766543
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-07 Score=89.30 Aligned_cols=73 Identities=19% Similarity=0.065 Sum_probs=55.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKC 367 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~ 367 (378)
.+.+.+.+..++.|++++.| .++.|.+|+||+||+|+ ++.+.+|+|++++.||+++.|.. +.|+++++|+++|
T Consensus 276 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 276 TIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred EEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence 34445556666677777777 67888999999999999 89999999999999988887763 6666666555443
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=72.34 Aligned_cols=65 Identities=11% Similarity=-0.092 Sum_probs=52.0
Q ss_pred CCCCCcee-eCceeee-----eEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 307 RNLPPSKI-DDSKIVD-----SIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~~-----s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
.|++++.| .++.|.. ++||++|.|+ ++.+.+++|++++.||.++.+. +++|++++.++.+|.+..
T Consensus 41 ~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~ 113 (154)
T cd04650 41 YIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTP 113 (154)
T ss_pred EECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 56666666 5666653 7899999998 8889999999999999999884 488888888888877664
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-05 Score=67.89 Aligned_cols=183 Identities=22% Similarity=0.297 Sum_probs=102.4
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
.|||+|.|.++|+ .-|.|.+++|+ |||+|+++.+.++ .+++|+|.+ ..+++.+.+.+. + ..
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~~---g------~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEEY---G------AK 62 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHHT---T------SE
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHHc---C------Ce
Confidence 3899999999999 48999999999 9999999999987 568988877 344555555431 1 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc-EEEEEee
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD-ITISCLP 165 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~-~ti~~~~ 165 (378)
+........ .++......+..+..+ ..+.++.+.||. +.+.. +..+++.+.+..++ +.-...+
T Consensus 63 -v~~~~~~~~---------~~~~r~~~~~~~~~~~----~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~ 128 (217)
T PF02348_consen 63 -VIFRRGSLA---------DDTDRFIEAIKHFLAD----DEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDP 128 (217)
T ss_dssp -EEE--TTSS---------SHHHHHHHHHHHHTCS----TTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEE
T ss_pred -eEEcChhhc---------CCcccHHHHHHHhhhh----HHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcccccc
Confidence 222221111 2343333333333321 134899999999 66665 88999988888765 3222222
Q ss_pred cCC-C--CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHH-HHHHH
Q 017030 166 MDD-S--RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNL 236 (378)
Q Consensus 166 ~~~-~--~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~-~l~~~ 236 (378)
... . .....-....+.++....+.+.......+. +.+.. .......++|.++.. .+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 191 (217)
T PF02348_consen 129 VGSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYIRRN-----------PEEFK-YFYIRQVGIYAFRKEMFLERF 191 (217)
T ss_dssp ECSHHHHTSTTSTEEEECTTSBEEEEESSESSECHHH-----------HCSSS-STEEEEEEEEEEEHHHHHHHH
T ss_pred ccchhhcccccceEEEeccccchhhcccCCCcccccc-----------ccccc-ccccccccccccccccccccc
Confidence 221 0 011122223344455555555443322110 00000 124567899999997 44333
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-06 Score=73.90 Aligned_cols=214 Identities=12% Similarity=0.149 Sum_probs=122.6
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh----cCCc-EEEEEeecC-hhhHHHHHHhhccCC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNYG 80 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~----~gi~-~I~iv~~~~-~~~i~~~l~~~~~~~ 80 (378)
.++.+|+||||.||||+ .+.||.|+||....++++..++++.. .|.+ ..+|-++.. .+...++++++. .
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~-~- 76 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA-G- 76 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC-C-
Confidence 46788999999999997 78999999996533899999988764 3432 445556544 556888887643 1
Q ss_pred CCcc---cCCceE-EEec-----cccCCCcCC-CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEecCHHHH
Q 017030 81 SGVT---FGDGCV-EVLA-----ATQTPGEAG-KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDF 148 (378)
Q Consensus 81 ~~~~---~~~~~i-~i~~-----~~~~~~~~~-~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~~d~~~~ 148 (378)
.... |....+ .+.. ..+..+... .-.+.|.|+....... .+++....+.+.+.+.+.|.+...-=-.+
T Consensus 77 ~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~ 156 (300)
T cd00897 77 VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRI 156 (300)
T ss_pred CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHH
Confidence 1111 100000 0000 000000000 1124466655443321 12222223468999999999654323467
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcceEEEE-CCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEE
Q 017030 149 VQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (378)
Q Consensus 149 l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~ 227 (378)
+.+|..+++++++=+.+...+ ...-|.+.. |..-+|+++.|-|..... ...- .......+++.++
T Consensus 157 lg~~~~~~~~~~~evv~Kt~~-dek~G~l~~~~g~~~vvEyse~p~e~~~-~~~~------------~~~~~~~nt~n~~ 222 (300)
T cd00897 157 LNHMVDNKAEYIMEVTDKTRA-DVKGGTLIQYEGKLRLLEIAQVPKEHVD-EFKS------------IKKFKIFNTNNLW 222 (300)
T ss_pred HHHHHhcCCceEEEEeecCCC-CCcccEEEEECCEEEEEEeccCCHHHHH-hhcC------------cccceEEEEeEEE
Confidence 888899999988866655432 233454443 322356777776654321 0000 0123467999999
Q ss_pred EeHHHHHHHHhh
Q 017030 228 FKKEILLNLLRW 239 (378)
Q Consensus 228 ~~~~~l~~~l~~ 239 (378)
|+-++|+++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999999887654
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.2e-07 Score=74.72 Aligned_cols=75 Identities=17% Similarity=0.008 Sum_probs=57.2
Q ss_pred CCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...+.+.+.|+++++|. ++.|. ++.||+||.|+ ++.+.. ++||++|+||.++.|.+ +.|++++.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 45667777788888883 34553 47888888887 666653 58999999999999887 778999999
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+.++.+..+|
T Consensus 141 ga~s~V~~dv 150 (162)
T TIGR01172 141 GANSVVLKDV 150 (162)
T ss_pred CCCCEECCCC
Confidence 9888776654
|
Cysteine biosynthesis |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-07 Score=89.55 Aligned_cols=105 Identities=13% Similarity=-0.038 Sum_probs=72.8
Q ss_pred EEecCCHHHHHHHHHhc-ccCCC---Cccc-----------cCCCCc-EEccCCCCCCcee-eCceee-eeEEecCcEEc
Q 017030 270 WEDIGTIRSFFEANLAL-TAHPP---MFSF-----------YDATKP-IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT 331 (378)
Q Consensus 270 ~~~i~t~~~~~~a~~~~-l~~~~---~~~~-----------~~~~~~-i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~ 331 (378)
.+.+.++++|+.++..+ +.... +... +++... +.+.+.|++++.| .++.|. ++.||+||.|+
T Consensus 219 ~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~ 298 (481)
T PRK14358 219 AFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG 298 (481)
T ss_pred EEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC
Confidence 44566788888777544 32211 1111 112111 2345556666666 466665 46699999999
Q ss_pred -ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee-eeeE
Q 017030 332 -SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL-CSVI 374 (378)
Q Consensus 332 -~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~-~~~~ 374 (378)
+|.|.+|+||++|+|++++.|.+++|++++.|+.+|.+. ++++
T Consensus 299 ~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~I 343 (481)
T PRK14358 299 AYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVL 343 (481)
T ss_pred CCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEE
Confidence 899999999999999999999999999999999998886 3444
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-07 Score=88.59 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=44.6
Q ss_pred CCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 307 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
.+++++.| .++.|. +++||+||.|+ ++.|.+|+||++|+|++++.|.+|+|+++++|+++|.+.
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~ 333 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLR 333 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEe
Confidence 34555555 455554 56777777777 677777777777777777777777777777777777775
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=73.33 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=58.0
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEEeec-----------eEcCCCEECCCCEEeeee
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEHS-----------VVGIRSRINANVHLKVSP 356 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i~~S-----------iI~~~~~Ig~~~~i~~sI 356 (378)
.++++.+.+.++..+++++.| .++.+. .+.||++|.|+ ++.|.++ .||+++.++.++.|.+++
T Consensus 6 ~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~ 85 (164)
T cd04646 6 AVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALK 85 (164)
T ss_pred cEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeE
Confidence 355666666677777777777 566664 35899999998 8888765 578888888888888888
Q ss_pred eCCCCeEeeeeeeee
Q 017030 357 ANPLCRRIWKCSSLC 371 (378)
Q Consensus 357 i~~~~~~~~~~~~~~ 371 (378)
|++++.|+.+|.+..
T Consensus 86 IGd~~~Ig~~a~I~~ 100 (164)
T cd04646 86 IGNNNVFESKSFVGK 100 (164)
T ss_pred ECCCCEEeCCCEECC
Confidence 887777777777643
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=62.80 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=36.8
Q ss_pred CCCCCcee-eCceee-eeEEecCcEEc-ceEEeec---------eEcCCCEECCCCEEee-eeeCCCCeEeeeee
Q 017030 307 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHS---------VVGIRSRINANVHLKV-SPANPLCRRIWKCS 368 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~S---------iI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~ 368 (378)
++++++.| .++.+. ++.||++|.|+ ++.|.++ .|++++.|+.++.|.. +.|++++.|+.++.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~ 76 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAV 76 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcE
Confidence 34555556 345555 48888888888 7777764 5666666665555532 44555554444443
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.2e-07 Score=80.20 Aligned_cols=65 Identities=12% Similarity=-0.040 Sum_probs=43.7
Q ss_pred cCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEee--------eeeCCC
Q 017030 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKV--------SPANPL 360 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~~--------sIi~~~ 360 (378)
++.|++++.| .++.|. ++.||++|.|+ ++.|. +++||++|+|+++|.|.+ ++|+++
T Consensus 29 ~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~ 108 (254)
T cd03351 29 NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNN 108 (254)
T ss_pred CCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCC
Confidence 3333333333 344443 57778888887 67774 688899999999888864 667777
Q ss_pred CeEeeeeee
Q 017030 361 CRRIWKCSS 369 (378)
Q Consensus 361 ~~~~~~~~~ 369 (378)
+.|+.+|.+
T Consensus 109 ~~I~~~~~I 117 (254)
T cd03351 109 NLLMAYVHV 117 (254)
T ss_pred CEECCCCEE
Confidence 777666666
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.2e-07 Score=83.71 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
.+.+.+.+.+.|+++|.| +++.|++|+|.++|.|+ ++.|.+|||++||+||++. .+++ +.++.+|.+.-.++
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-----~i~d-~~~g~~~~i~~g~~ 344 (358)
T COG1208 271 GPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-----IIGD-VVIGINSEILPGVV 344 (358)
T ss_pred CCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-----eecc-eEecCceEEcCceE
Confidence 344445555666666666 46788999999999999 8999999999999999922 2888 99999888876654
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=73.38 Aligned_cols=30 Identities=10% Similarity=-0.100 Sum_probs=11.5
Q ss_pred ceEcCCCEECCCCEEee-eeeCCCCeEeeee
Q 017030 338 SVVGIRSRINANVHLKV-SPANPLCRRIWKC 367 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~ 367 (378)
++|+++|.||.++.|.. +.|++++.|+.++
T Consensus 151 ~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~ 181 (197)
T cd03360 151 VTIGEGAFIGAGATIIQGVTIGAGAIIGAGA 181 (197)
T ss_pred cEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence 33444444444433332 3333333333333
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.6e-07 Score=79.41 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=43.6
Q ss_pred cCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEe--------eeeeCCC
Q 017030 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLK--------VSPANPL 360 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~--------~sIi~~~ 360 (378)
.+.|++++.| .++.|. ++.||++|.|+ ++.|. +++||++|+|+++|.|. +++|+++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 3333333434 344443 57788888887 77775 68889999999988886 4566777
Q ss_pred CeEeeeeee
Q 017030 361 CRRIWKCSS 369 (378)
Q Consensus 361 ~~~~~~~~~ 369 (378)
+.|+.+|.+
T Consensus 108 ~~I~~~~~I 116 (254)
T TIGR01852 108 NLLMAYSHI 116 (254)
T ss_pred CEECCCCEE
Confidence 666666665
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=78.80 Aligned_cols=73 Identities=14% Similarity=-0.026 Sum_probs=44.9
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-------------eeEEecCcEEc-ceEEe--------eceEcCCCEECCCCEE-
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-------------DSIISHGSFIT-SSFIE--------HSVVGIRSRINANVHL- 352 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-------------~s~Ig~~~~I~-~~~i~--------~SiI~~~~~Ig~~~~i- 352 (378)
.+.+.|...+.|+.++.| .++.|. ++.||++|.|+ ++.|. +++||++|.|+.++.|
T Consensus 39 ~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~ 118 (254)
T cd03351 39 GSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVA 118 (254)
T ss_pred CCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEEC
Confidence 334444445555555555 355553 57788888888 67775 3777888877777777
Q ss_pred eeeeeCCCCeEeeeeee
Q 017030 353 KVSPANPLCRRIWKCSS 369 (378)
Q Consensus 353 ~~sIi~~~~~~~~~~~~ 369 (378)
.+|+|++++.+..++.+
T Consensus 119 ~~~~IG~~~~i~~~~~i 135 (254)
T cd03351 119 HDCVIGNNVILANNATL 135 (254)
T ss_pred CCCEECCCcEECCCccc
Confidence 45666665555444433
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=79.93 Aligned_cols=50 Identities=12% Similarity=-0.066 Sum_probs=26.8
Q ss_pred eEEecCcEEc-ceEEee-ceEcCCCEECCCCEEe--------------------eeeeCCCCeEeeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEH-SVVGIRSRINANVHLK--------------------VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~--------------------~sIi~~~~~~~~~~~~~~ 371 (378)
+.||++|.|+ ++.|.+ +.||++|+|++++.|. +++|++++.|+.+|.+..
T Consensus 149 ~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~ 220 (343)
T PRK00892 149 VKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDR 220 (343)
T ss_pred cEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEec
Confidence 4444444444 444433 3366666666666663 356666666666665544
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.3e-06 Score=79.54 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=121.8
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhhc--------------CCc-EEEEEee-cChh
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GIN-KVYILTQ-YNSA 67 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~~--------------gi~-~I~iv~~-~~~~ 67 (378)
.++-+|+||||.||||+ .+.||.|++|+ ++ ++++...+++.+. +.. ..+|.++ ...+
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 56778999999999998 88999999884 67 8999888876431 111 3366665 4556
Q ss_pred hHHHHHHhhccCCCCcccCCceEEEeccccCC----CcCC----------CccccCcHHHHHHHHH--HhcCCCCCCCCe
Q 017030 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTP----GEAG----------KRWFQGTADAVRQFHW--LFEDPRNKVIED 131 (378)
Q Consensus 68 ~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~----------~~~~~Gt~~al~~~~~--~i~~~~~~~~~~ 131 (378)
...++++++..++-.. ..+.+. .|.. ..+| ...|.|.|+....... .+++....+.+.
T Consensus 191 ~T~~ff~~~~~FGl~~----~~V~fF--~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~y 264 (493)
T PLN02435 191 ATRKFFESHKYFGLEA----DQVTFF--QQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKY 264 (493)
T ss_pred HHHHHHHhCCCCCCCc----cceEEE--ecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEE
Confidence 7888887543222110 011111 1110 0001 1235577766554322 233333345689
Q ss_pred EEEEcCCeEEe-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE-CCCCC--EEEEEecCCccchhcccccchhc
Q 017030 132 VLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGR--VLSFSEKPKGKDLKAMAVDTTVL 207 (378)
Q Consensus 132 ~lv~~gD~~~~-~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~--v~~~~ek~~~~~~~~~~~~~~~~ 207 (378)
+.+.+.|.+.. .---.++-++..++.++.+-+.+...+ ...-|.+.. +.+|+ |+++.|-+.......-..++.
T Consensus 265 i~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~-- 341 (493)
T PLN02435 265 VDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGR-- 341 (493)
T ss_pred EEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccc--
Confidence 99999999543 323456788888899888766554321 234566544 24454 666666553221100000010
Q ss_pred cccccccccCcceeeeeEEEEeHHHHHHHHh
Q 017030 208 GLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
...+..+.+.++|+-++|+++.+
T Consensus 342 --------L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 342 --------LRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred --------cccchhhHHHhhccHHHHHHHHH
Confidence 12355788899999999987743
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=76.49 Aligned_cols=77 Identities=9% Similarity=-0.048 Sum_probs=57.0
Q ss_pred cCCCCcEEccCCCCCCcee-------eCceee-eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEE-eeee
Q 017030 296 YDATKPIYTSRRNLPPSKI-------DDSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHL-KVSP 356 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-------~~~~i~-~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i-~~sI 356 (378)
+++.+.+...+.+.+++.| .++.|. +|+||++|.|+ ++.|.+ ++|+++|.||.++.| .++.
T Consensus 101 IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~ 180 (231)
T TIGR03532 101 IGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVR 180 (231)
T ss_pred ECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCE
Confidence 3444555555555555544 345553 89999999999 888874 889999999999998 5789
Q ss_pred eCCCCeEeeeeeeeee
Q 017030 357 ANPLCRRIWKCSSLCS 372 (378)
Q Consensus 357 i~~~~~~~~~~~~~~~ 372 (378)
|++++.|+.++.+...
T Consensus 181 Ig~~~~IgagsvV~~d 196 (231)
T TIGR03532 181 VGKGAVVAAGAIVTED 196 (231)
T ss_pred ECCCCEECCCCEEccc
Confidence 9999999888877543
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-06 Score=72.98 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=38.5
Q ss_pred eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~ 373 (378)
+|+||++|.|+ ++.+.+|+|+++|.||.++.|.+ +.|++++.|+.++.+..++
T Consensus 71 ~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 71 DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred CCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 56777777777 77777788888888887777744 7777777777776666543
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=67.85 Aligned_cols=62 Identities=18% Similarity=0.007 Sum_probs=38.5
Q ss_pred CCcee-eCceee-eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEe----------------eeeeCCCCeEeeeeee
Q 017030 310 PPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK----------------VSPANPLCRRIWKCSS 369 (378)
Q Consensus 310 ~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~----------------~sIi~~~~~~~~~~~~ 369 (378)
+++.| .++.|. +++||+||.|+ ++.| .+|+|+++|.|++++.+. +++|++++.|+.+|.+
T Consensus 3 ~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v 82 (119)
T cd03358 3 DNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATI 82 (119)
T ss_pred CCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEE
Confidence 34444 333343 56677777776 6666 467777777777777654 4566666666666666
Q ss_pred ee
Q 017030 370 LC 371 (378)
Q Consensus 370 ~~ 371 (378)
..
T Consensus 83 ~~ 84 (119)
T cd03358 83 LP 84 (119)
T ss_pred eC
Confidence 43
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=80.65 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=33.7
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe---------------------eceEcCCCEECCCCEE
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE---------------------HSVVGIRSRINANVHL 352 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~---------------------~SiI~~~~~Ig~~~~i 352 (378)
.+...+..++.|+.+|.| .++.|. +++||++|.|+ ++.|- +++||++|.||.|+.|
T Consensus 131 ~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 131 GPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred CCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence 334444445555555555 355554 56666666666 55552 4777888888888887
Q ss_pred e
Q 017030 353 K 353 (378)
Q Consensus 353 ~ 353 (378)
.
T Consensus 211 ~ 211 (324)
T TIGR01853 211 D 211 (324)
T ss_pred e
Confidence 3
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=71.27 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=28.1
Q ss_pred eEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeee
Q 017030 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCS 368 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~ 368 (378)
+.||++|.|+ ++.|.++.|+++|.||.++.|.++.|++++.++.++.
T Consensus 83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred EEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 5566666666 5666666666666666666665556666666554433
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=71.62 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=26.7
Q ss_pred eEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
+.||++|.|+ ++.+.+++|+++++||+++.|. +++|++++.++.+|.+
T Consensus 73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V 122 (161)
T cd03359 73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVV 122 (161)
T ss_pred eEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3566666666 5666666666666666655552 2555555555554443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.7e-07 Score=85.83 Aligned_cols=65 Identities=15% Similarity=-0.013 Sum_probs=44.0
Q ss_pred cCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCC----------EECCCCEEeeeeeCCCCeEeeeeee
Q 017030 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRS----------RINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~----------~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
++.|+++|.|+++.+++|+||++|.|+ ++.|.+|+||++| +||+++.|.+|+|++++.|+.+|++
T Consensus 282 ~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 282 NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceE
Confidence 455666666666667777777777777 6777777776666 5555666667777777777666544
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-06 Score=76.18 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=42.1
Q ss_pred eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
+++||++|.|| ++.|.+|+|+++|.||.++.|. +++|++++.|+.++.++
T Consensus 126 ~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~ 177 (246)
T PLN02472 126 ETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLP 177 (246)
T ss_pred CcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 68999999999 8999999999999999998773 47777777777776665
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=70.67 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=38.5
Q ss_pred eeEEecCcEEc-ceEEee-------------ceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEH-------------SVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~-------------SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++.||++|.|+ ++.|.. +.||+++.|++++.+.+++|++++.|+++|.+.
T Consensus 42 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig 105 (161)
T cd03359 42 TVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIG 105 (161)
T ss_pred ceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEc
Confidence 35677777777 676654 478999999999999888888888887777663
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=81.44 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=33.0
Q ss_pred ceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 317 SKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.+++|.||+||.|| -+.++ +|.|+++++||++|+++++-|+.++++.-
T Consensus 316 S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~H 366 (460)
T COG1207 316 SVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGH 366 (460)
T ss_pred ceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccc
Confidence 344456666677776 56663 57777777777777777777777776543
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=75.71 Aligned_cols=212 Identities=19% Similarity=0.292 Sum_probs=122.6
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeec-Ceeeeeeeehhhhhh----cCCc-EEEEEeecChhhHHHHHHh-hccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCIN----SGIN-KVYILTQYNSASLNRHLAR-AYNY 79 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~-g~~pli~~~l~~l~~----~gi~-~I~iv~~~~~~~i~~~l~~-~~~~ 79 (378)
.++.+|+||||+||||+ ...||.+++|. |+ ++++.+.+.+.. ++++ ..+|-++.+.++-..++.. .| +
T Consensus 104 ~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y-~ 178 (472)
T COG4284 104 GKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY-F 178 (472)
T ss_pred CceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh-c
Confidence 56788999999999998 77899999999 67 999998877654 3443 4566667666555555432 22 2
Q ss_pred CC-Cccc---CCc-eEEEeccccCC--CcCC---CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEe-cCHH
Q 017030 80 GS-GVTF---GDG-CVEVLAATQTP--GEAG---KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYR-MDYM 146 (378)
Q Consensus 80 ~~-~~~~---~~~-~i~i~~~~~~~--~~~~---~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~-~d~~ 146 (378)
+. ..++ ... ..+++...... ..++ .-.|.|.|+-...... .+++....+.+.+.|.+.|.+.. .|+
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~- 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL- 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-
Confidence 21 1111 100 01111111100 0011 1224566654433322 33332234468999999999442 333
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcceEEE-ECCCCCEEEEEecCCccchhcccccchhccccccccccCcceee-ee
Q 017030 147 DFVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MG 224 (378)
Q Consensus 147 ~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G 224 (378)
.++.++...+.+.++=++..... ...-|++. .|..-+++.+.+-|...+... .-+ +- ......+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~-~s~--------~~--~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEF-TSD--------GK--LKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhh-ccc--------cc--eeeeccccce
Confidence 67888899999888877664432 34456654 676678999988877422100 000 00 0112334 78
Q ss_pred EEEEeHHHHHHH
Q 017030 225 VYLFKKEILLNL 236 (378)
Q Consensus 225 iy~~~~~~l~~~ 236 (378)
+|+++-.++.+.
T Consensus 326 l~~~~~~~l~~~ 337 (472)
T COG4284 326 LHLFSVKFLKEA 337 (472)
T ss_pred eehhHHHHHHhh
Confidence 999998877654
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=76.39 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=50.3
Q ss_pred CCCCCcee-eCcee-----------eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 307 RNLPPSKI-DDSKI-----------VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 307 ~i~~~~~i-~~~~i-----------~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
.|++++.| +++.| .+|+||++|.|+ ++.|.+|+|+++|.||.++.|. ++.|++++.|+.++.+..+
T Consensus 93 ~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 93 SVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred EECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 45555555 34444 368999999999 8999999999999999998884 4777777777777766554
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=77.64 Aligned_cols=73 Identities=15% Similarity=0.031 Sum_probs=53.0
Q ss_pred cEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 301 PIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 301 ~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
.|++.+.|+++++|+ ++.|. +++||+||.|. ++.+ .+++||++|.||.||.| .++.|+++++|+.
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence 456667777777774 34443 45666666665 4444 46799999999999999 6789999999999
Q ss_pred eeeeeeee
Q 017030 366 KCSSLCSV 373 (378)
Q Consensus 366 ~~~~~~~~ 373 (378)
++.+..+|
T Consensus 242 gSVV~kdV 249 (294)
T PLN02694 242 GSVVLIDV 249 (294)
T ss_pred CCEECCcC
Confidence 88887664
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-06 Score=77.58 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=6.4
Q ss_pred ceEcCCCEECCCCEE
Q 017030 338 SVVGIRSRINANVHL 352 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i 352 (378)
+.||++|.|++|++|
T Consensus 166 ~~IG~~v~I~~GavI 180 (338)
T COG1044 166 VVIGNNVIIHSGAVI 180 (338)
T ss_pred cEECCceEECCCCEE
Confidence 444444444444443
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-06 Score=85.37 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=45.3
Q ss_pred CCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 307 RNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 307 ~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
.|++++.|.++.+.+|+||++|.|| ++.+. +++|+++++||.++.+++|+|+++++|+..+.+..++|
T Consensus 308 ~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~I 377 (482)
T PRK14352 308 TVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADI 377 (482)
T ss_pred EECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEE
Confidence 3344444433445677777777777 67664 77777777777777777777777777776665555443
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3e-06 Score=75.85 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=21.4
Q ss_pred eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEee
Q 017030 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKV 354 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~~ 354 (378)
++.||++|.|+ ++.|- +.+||++++|++++.|..
T Consensus 47 ~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~ 94 (255)
T PRK12461 47 PTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHR 94 (255)
T ss_pred CCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEec
Confidence 45566666665 55553 456777777777777763
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-06 Score=75.89 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=6.6
Q ss_pred eEEecCcEEc-ceEE
Q 017030 322 SIISHGSFIT-SSFI 335 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i 335 (378)
+.||++|.|+ ++.|
T Consensus 77 v~IG~~~~I~~~~~I 91 (254)
T TIGR01852 77 LIIGDNNTIREFVTI 91 (254)
T ss_pred EEECCCCEECCCCEE
Confidence 4445555544 4444
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.5e-06 Score=63.58 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=41.4
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
.++||++|.|+ ++.|. ++.||++|+||. +|.+|+|++++++.++|.+-.|+|
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siI 82 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYL 82 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEE
Confidence 46788888887 66665 488888888865 678999999999999988866655
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-06 Score=74.58 Aligned_cols=53 Identities=9% Similarity=-0.108 Sum_probs=39.7
Q ss_pred eeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~~ 373 (378)
++.||+||.|. ++.| .+++|+++|.||.+|.|. +++|++++.|+.+|.+.+++
T Consensus 147 ~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~ 210 (269)
T TIGR00965 147 CAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQST 210 (269)
T ss_pred CCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCC
Confidence 46666666666 5544 457899999999998886 58888888888888886654
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.7e-06 Score=67.69 Aligned_cols=66 Identities=9% Similarity=-0.073 Sum_probs=42.9
Q ss_pred CCCCCcee-eCcee-eeeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeeee
Q 017030 307 RNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 307 ~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~~ 372 (378)
.|++++.| .++.+ .++.||++|.|+ ++.+- +++|++++.||.++.| .++.|++++.|+.++.+..+
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 33444444 23444 356677777776 56553 4678888888888888 45778888888877777643
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-06 Score=75.01 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=36.2
Q ss_pred ccCCCCcEEccCCCCCCcee-eCcee---------eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCe
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKI---------VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCR 362 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i---------~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~ 362 (378)
.+++.+.|...+.|+++|.| .++.+ .+++||+||.|| + |.|.++++||+++.|.. ++|+++++
T Consensus 137 ~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~-----a~I~~GV~IG~gavIGaGavI~~~~~ 211 (269)
T TIGR00965 137 MVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGAR-----SEIVEGVIVEEGSVISMGVFIGQSTK 211 (269)
T ss_pred EECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCC-----CEEcCCCEECCCCEEeCCCEECCCCE
Confidence 33344445555555666655 33333 457788888887 5 34445555555554443 45555555
Q ss_pred Eeee
Q 017030 363 RIWK 366 (378)
Q Consensus 363 ~~~~ 366 (378)
|.+.
T Consensus 212 I~~~ 215 (269)
T TIGR00965 212 IYDR 215 (269)
T ss_pred Eecc
Confidence 5543
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-06 Score=72.17 Aligned_cols=102 Identities=16% Similarity=0.036 Sum_probs=54.2
Q ss_pred eEEecCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCC
Q 017030 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIR 343 (378)
Q Consensus 269 ~~~~i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~ 343 (378)
++..++.+....+....+.+.. ....++.+.+.+.+++.+++++.| .++.|. ++.||++|.|+ ++.|. ++.|+++
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 141 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY 141 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence 3444444444444444433221 112233444445555555566655 455553 36666666665 55554 4666666
Q ss_pred CEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 344 SRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 344 ~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
++|+.++.|. ++.+++++.|+.+|.+.
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~ 169 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATII 169 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEe
Confidence 6666666666 46666666666665554
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-06 Score=75.47 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred eEEecCcEEc-ceEEee--------ceEcCCCEECCCCEEe-eeeeCCCCe
Q 017030 322 SIISHGSFIT-SSFIEH--------SVVGIRSRINANVHLK-VSPANPLCR 362 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~--------SiI~~~~~Ig~~~~i~-~sIi~~~~~ 362 (378)
+.||++|.|+ ++.|.+ ++||+++.|+.++.|. +|+|++++.
T Consensus 81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~ 131 (262)
T PRK05289 81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVI 131 (262)
T ss_pred EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeE
Confidence 4555555555 455543 2455555555555544 344444433
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-06 Score=82.12 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=47.7
Q ss_pred cCCCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
++.|+.++.|.++.+.+|+||++|.|+ ++.|. +|+||++|+|++++.|.+++|++++++..
T Consensus 300 ~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~ 362 (458)
T PRK14354 300 DSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSH 362 (458)
T ss_pred ccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecc
Confidence 456667777766677788888898888 78887 78889999888888888888887765433
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=73.94 Aligned_cols=263 Identities=19% Similarity=0.248 Sum_probs=136.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh----cCCc-EEEEEee-cChhhHHHHHHhhccC
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQ-YNSASLNRHLARAYNY 79 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~----~gi~-~I~iv~~-~~~~~i~~~l~~~~~~ 79 (378)
..++.+|+||||.||||+ ...||.|+||.....+++..++++.. .|.. -.+|.++ ...+...+++++.+.+
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 467888999999999998 78899999996643788887776654 3443 4566665 4456788899874433
Q ss_pred CCCcc-cCCceEEEeccccC-C-CcCC------Ccc-ccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEEecCHHH
Q 017030 80 GSGVT-FGDGCVEVLAATQT-P-GEAG------KRW-FQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (378)
Q Consensus 80 ~~~~~-~~~~~i~i~~~~~~-~-~~~~------~~~-~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~~~d~~~ 147 (378)
..... |....+-.+..... . ...+ ..| |.|.|+...... ..+++....+.+.+.+.+.|.+...---.
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 22211 11111111111000 0 0000 011 346666443332 12322222346899999999955433346
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCC--EEEEEecCCccchhcccccchhccccccccccCcceeeeeE
Q 017030 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 225 (378)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 225 (378)
++.++.++++++.+-+.+...+ ...-|.+.. .+|+ ++++.+-|..... .+.. .......++|.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~-~~G~~~vvEysqip~~~~~-~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSP-DEKGGVLCR-YDGKLQVVEYSQIPKEHMA-EFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CST-TTSSEEEEE-ETTEEEEEEGGGS-HHGHH-HHTS------------TTTSBEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCC-CCceeEEEE-eCCccEEEEeccCCHHHHH-hhhc------------cccceEEEece
Confidence 7888889999998888776432 233455543 2454 4455444433110 0000 01224568888
Q ss_pred EEEeHHHHHHHHhhhCCCCC------c-----hhccccc------ccccc-cceEEEEe-cceEEecCCHHHHHHHHHhc
Q 017030 226 YLFKKEILLNLLRWRFPTAN------D-----FGSEIIP------ASANE-QFLKAYLF-NDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 226 y~~~~~~l~~~l~~~~~~~~------~-----~~~~~l~------~l~~~-~~i~~~~~-~~~~~~i~t~~~~~~a~~~~ 286 (378)
-+|+-+.++++++....... . -...+++ ..+.. .+..++.. ...|..+.+..|++....++
T Consensus 276 i~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~ 355 (420)
T PF01704_consen 276 IWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDL 355 (420)
T ss_dssp EEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTT
T ss_pred eeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccCcceeeccce
Confidence 89999999888765321110 0 0000111 01111 12233333 35688999999998887654
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.1e-06 Score=82.81 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=43.4
Q ss_pred CCCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeee
Q 017030 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCS 368 (378)
Q Consensus 306 ~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~ 368 (378)
+.|+.++.|..+.+.+|+||++|.|+ ++.|. +++|+++|+||+++.|.+++|+++++|..++.
T Consensus 298 ~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 362 (450)
T PRK14360 298 SQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSY 362 (450)
T ss_pred EEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEecccee
Confidence 34455555545556677888888888 77776 68888888888888887777777665544433
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.1e-06 Score=74.55 Aligned_cols=219 Identities=12% Similarity=0.124 Sum_probs=120.0
Q ss_pred eEEEEcCCCCcccccccccCcccceee---cCeeeeeeeehhhhhhcC--------C-cEEEEEee-cChhhHHHHHHhh
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINSG--------I-NKVYILTQ-YNSASLNRHLARA 76 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi---~g~~pli~~~l~~l~~~g--------i-~~I~iv~~-~~~~~i~~~l~~~ 76 (378)
.+|+||||.||||+ .+.||.++|| .|+ ++++..++++.+.. . -..+|.++ ...++..++++++
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 8899999999 578 89999998876521 1 24466665 4456688888754
Q ss_pred ccCCCCc-c---cCCceEEEeccccC------CCcCC-CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEec
Q 017030 77 YNYGSGV-T---FGDGCVEVLAATQT------PGEAG-KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRM 143 (378)
Q Consensus 77 ~~~~~~~-~---~~~~~i~i~~~~~~------~~~~~-~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~~ 143 (378)
..++-.. + |....+-.+...+. ..+.. ...|.|.|+....... .+++....+.+.+.+..-|.....
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3232110 0 11111111110000 00000 1235577666544322 222222334688888888884443
Q ss_pred C-HHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE--CCCCC--E--EEEEecCCccchhcccccchhcccccccccc
Q 017030 144 D-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR--V--LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEE 216 (378)
Q Consensus 144 d-~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (378)
. .-.++-.+..+++++...+.+..+ .+.-|.+.. ..+|+ | +++.|-+..-..... .+.. .......
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~-~~g~----~~~~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGK-DDGD----VDDKTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCC-CCCC----ccccccc
Confidence 3 345566677788888877665432 456776643 23343 3 666665532110000 0000 0000001
Q ss_pred CcceeeeeEEEEeHHHHHHHHhh
Q 017030 217 KPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 217 ~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
+....|++.++|+-+.+.+.+++
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 22467899999999988877764
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-06 Score=64.03 Aligned_cols=36 Identities=17% Similarity=-0.096 Sum_probs=20.5
Q ss_pred eeceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeee
Q 017030 336 EHSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 336 ~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~ 371 (378)
..++|+++|.|++++.| .+++|++++.++.+|.+..
T Consensus 57 ~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~ 93 (109)
T cd04647 57 APIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK 93 (109)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee
Confidence 34455666666666655 4556666666665555553
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.8e-06 Score=82.14 Aligned_cols=69 Identities=16% Similarity=0.002 Sum_probs=55.6
Q ss_pred CCCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 306 ~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+.|++++.|..+.+.+|+|+++|.|+ ++.|. +++|+++|+||+++++.+++|++++++...+.+..++|
T Consensus 291 s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~I 361 (448)
T PRK14357 291 CEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATV 361 (448)
T ss_pred cEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEE
Confidence 45556666655667799999999999 78884 59999999999999999999999998888666655444
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.7e-06 Score=66.39 Aligned_cols=48 Identities=8% Similarity=0.103 Sum_probs=26.5
Q ss_pred eEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee---------eeeCCCCeEeeeeee
Q 017030 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV---------SPANPLCRRIWKCSS 369 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~ 369 (378)
+.||+||.|+ ++.| .++.|+++|.|+.++.|.+ ++|++++.|+.++.+
T Consensus 32 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I 90 (139)
T cd03350 32 AYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEV 90 (139)
T ss_pred CEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEE
Confidence 3455555555 4444 3466666666666666642 455555555555554
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.7e-06 Score=70.50 Aligned_cols=50 Identities=12% Similarity=-0.058 Sum_probs=23.7
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
++.|+++|.|| ++.| .+++|..+++||++|.|. +|.+.++++|+++|.+.
T Consensus 126 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~ 178 (197)
T cd03360 126 GAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIG 178 (197)
T ss_pred CCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEEC
Confidence 34444444444 3333 344444555555555553 35555555555555543
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.8e-06 Score=71.44 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=29.7
Q ss_pred cCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEEee-ceEcCCCEECCCCEE
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEH-SVVGIRSRINANVHL 352 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i 352 (378)
+.+.+.+.+++.|+++++| .++.| .++.||++|.|+ ++.|.+ ++|++++.|++++.|
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3344444444555555555 33444 355555555555 455544 566666666666655
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.4e-06 Score=77.42 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=35.8
Q ss_pred Cceee-eeEEecCcEEc-ceEEe--------------------eceEcCCCEECCCCEEe-----eeeeCCCCeEeeeee
Q 017030 316 DSKIV-DSIISHGSFIT-SSFIE--------------------HSVVGIRSRINANVHLK-----VSPANPLCRRIWKCS 368 (378)
Q Consensus 316 ~~~i~-~s~Ig~~~~I~-~~~i~--------------------~SiI~~~~~Ig~~~~i~-----~sIi~~~~~~~~~~~ 368 (378)
++.|. ++.||++|.|+ ++.|. +++|+++|.||.++.|. +++|+++++|++.|+
T Consensus 160 ~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~ 239 (343)
T PRK00892 160 NVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQ 239 (343)
T ss_pred CeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeE
Confidence 44443 34477777777 66663 57888888888888884 466666666666555
Q ss_pred e
Q 017030 369 S 369 (378)
Q Consensus 369 ~ 369 (378)
|
T Consensus 240 I 240 (343)
T PRK00892 240 I 240 (343)
T ss_pred E
Confidence 5
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.1e-06 Score=75.70 Aligned_cols=75 Identities=27% Similarity=0.210 Sum_probs=45.0
Q ss_pred ccccCCCCcEEccCCCCCCceeeCceeee--------------eEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeee
Q 017030 293 FSFYDATKPIYTSRRNLPPSKIDDSKIVD--------------SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPA 357 (378)
Q Consensus 293 ~~~~~~~~~i~~~~~i~~~~~i~~~~i~~--------------s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi 357 (378)
+.+++.+.+.++..+..+|+.+.++++.+ |+||++|+|+ |+.+.+|.|+.+++++..+.|..||+
T Consensus 240 ~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~iv 319 (371)
T KOG1322|consen 240 FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIV 319 (371)
T ss_pred HHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhc
Confidence 56777888888888888887774444443 5555555555 45555555555555555555555555
Q ss_pred CCCCeEeeee
Q 017030 358 NPLCRRIWKC 367 (378)
Q Consensus 358 ~~~~~~~~~~ 367 (378)
+-+++||.++
T Consensus 320 g~~~~IG~~~ 329 (371)
T KOG1322|consen 320 GWNVPIGIWA 329 (371)
T ss_pred cccccccCce
Confidence 5555554444
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.08 E-value=9e-06 Score=58.52 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=31.9
Q ss_pred eEEecCcEEc-ceEEee-ceEcCCCEECCCCEEee---------eeeCCCCeEeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKV---------SPANPLCRRIWKCSSL 370 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~~ 370 (378)
|.||++|.|+ ++.|.. ++||++++|++++.|.+ ..|++++.++.+|.+.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 3566666666 566654 77777777777777775 4555565555555554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=6e-06 Score=76.09 Aligned_cols=73 Identities=14% Similarity=0.026 Sum_probs=51.7
Q ss_pred cEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 301 PIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 301 ~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
.|++.+.|+++++|. ++.|. +++||+||.|. ++.| .+++||++|.||.|+.| .+..||++++|+.
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECC
Confidence 456666667666663 23443 45666666665 4444 24789999999999888 4688999999999
Q ss_pred eeeeeeee
Q 017030 366 KCSSLCSV 373 (378)
Q Consensus 366 ~~~~~~~~ 373 (378)
++++..+|
T Consensus 308 gSVV~~dV 315 (360)
T PLN02357 308 GSVVLKDV 315 (360)
T ss_pred CCEECccc
Confidence 98887765
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=67.56 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=77.8
Q ss_pred eeEEEEcCCC-CcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChh--hHHHHHHhhccCCCCcc
Q 017030 9 VAAVILGGGA-GTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSA--SLNRHLARAYNYGSGVT 84 (378)
Q Consensus 9 ~~avIla~G~-g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~--~i~~~l~~~~~~~~~~~ 84 (378)
|.++|+.|-. +||| .-|.|+|+++. |||+++|+++.++. +++++|.++-+.+ .+.++.... |
T Consensus 3 ~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G-- 68 (241)
T COG1861 3 MILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G-- 68 (241)
T ss_pred cEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C--
Confidence 4555666655 4888 47999999999 99999999999874 6889999865543 366665432 1
Q ss_pred cCCceEEEeccccCCCcCCCccccCcH-HHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTA-DAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~-~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.+. .|+. +.|......++.. ..+.++=+.||. +.+.+ ++.+++.|.+++++
T Consensus 69 -----~~vf--------------rGs~~dVL~Rf~~a~~a~---~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 -----FYVF--------------RGSEEDVLQRFIIAIKAY---SADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred -----eeEe--------------cCCHHHHHHHHHHHHHhc---CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 1111 2444 3444444444332 246888899999 66666 58889999998876
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=65.73 Aligned_cols=65 Identities=12% Similarity=-0.129 Sum_probs=31.6
Q ss_pred cCCCCCCcee-eCceee---eeEEecCcEEc-ceEEee-------------ceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEH-------------SVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~-------------SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
+..|+++++| .++.+. +..||++|.|+ ++.|.. ..++..++||++|.| .+++|+++++|++
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 3445555655 334332 34667777776 665531 122233444444444 2344455555555
Q ss_pred eeee
Q 017030 366 KCSS 369 (378)
Q Consensus 366 ~~~~ 369 (378)
+|.+
T Consensus 142 ~~~V 145 (169)
T cd03357 142 NSVI 145 (169)
T ss_pred CCEE
Confidence 5555
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.9e-06 Score=71.43 Aligned_cols=71 Identities=14% Similarity=-0.028 Sum_probs=52.0
Q ss_pred EEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
|..++-|.|++.+ ..++|. |..||+|++|| |+.+.+|||.++|+|.+|+.+-+|||+=+++||.=.-++++
T Consensus 285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccc
Confidence 3333334444444 344553 88889999999 89999999999999999999999999988888855554443
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-05 Score=71.43 Aligned_cols=65 Identities=8% Similarity=-0.161 Sum_probs=43.5
Q ss_pred CCCCcee-eCceee-eeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeeee
Q 017030 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 308 i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~~ 372 (378)
|++++.| .++.|. +++||+||.|+ ++.|. +++|+++|.||.++.| .+++|++++.|+.+|.+..+
T Consensus 135 Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 135 VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred ECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 3444444 234443 35667777776 55443 4788999999988888 56888888888888877653
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=71.74 Aligned_cols=75 Identities=15% Similarity=-0.007 Sum_probs=51.1
Q ss_pred CCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...|++.+.|++++.|+ +..|. ++.||+||.|. ++.+- +++||++|.||.||.|.+ +.|+++++|
T Consensus 141 gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~I 220 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKI 220 (273)
T ss_pred eeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEE
Confidence 34566677777777773 33442 46666666666 55443 468888999998888866 778888888
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+.++.+..+|
T Consensus 221 GAgSvV~~dV 230 (273)
T PRK11132 221 GAGSVVLQPV 230 (273)
T ss_pred CCCCEECccc
Confidence 8777766543
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=64.97 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=42.4
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceee--------------------------eeEEecCcEEc-ceEEeeceEcCCCE
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIV--------------------------DSIISHGSFIT-SSFIEHSVVGIRSR 345 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~--------------------------~s~Ig~~~~I~-~~~i~~SiI~~~~~ 345 (378)
.++++++.+..++.|+.++.| .++.++ .+.||++|+|| ++.|-.|.|+++|-
T Consensus 18 a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~l 97 (176)
T COG0663 18 AFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVL 97 (176)
T ss_pred eEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcE
Confidence 477788888888888877777 333222 24456666666 55555566666666
Q ss_pred ECCCCEEee-eeeCCCCeEeeee
Q 017030 346 INANVHLKV-SPANPLCRRIWKC 367 (378)
Q Consensus 346 Ig~~~~i~~-sIi~~~~~~~~~~ 367 (378)
||=|+.|-| +.|++++.|+-+.
T Consensus 98 IGmgA~vldga~IG~~~iVgAga 120 (176)
T COG0663 98 IGMGATVLDGAVIGDGSIVGAGA 120 (176)
T ss_pred EecCceEeCCcEECCCcEEccCC
Confidence 655554444 4444444444333
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=60.82 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=36.0
Q ss_pred eeEEecCcEEc-ceE---EeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 321 DSIISHGSFIT-SSF---IEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~---i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
++.|++++.|+ ++. +..++|++++.|+.++.+.. +.|++++.++.+|.+..+
T Consensus 34 ~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~ 90 (101)
T cd03354 34 NCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD 90 (101)
T ss_pred CCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc
Confidence 34445555555 332 56677888888888888877 777888877777776544
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=71.84 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=28.3
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee-eeeCCC
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV-SPANPL 360 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~-sIi~~~ 360 (378)
+++||++|.|| ++.| .+++||++++||.++.|.. +.|++.
T Consensus 176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~ 218 (272)
T PRK11830 176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDR 218 (272)
T ss_pred CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcC
Confidence 58899999999 7665 6677777777777766653 555543
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=73.09 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=56.9
Q ss_pred CCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...|++.+.|++++.|+ ++.|. +++||+||.|. ++.|- +..||++|.||.|+.|-+ +.||++++|
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiI 284 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMV 284 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEE
Confidence 34567778888888884 45553 67777777777 66663 478999999999999865 888999999
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+-|+.+..+|
T Consensus 285 GAGSVV~kDV 294 (355)
T PLN02739 285 AAGSLVLKDV 294 (355)
T ss_pred CCCCEECCCC
Confidence 8888876654
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=60.68 Aligned_cols=51 Identities=14% Similarity=-0.051 Sum_probs=34.6
Q ss_pred eeEEecCcEEc-ceEEee--------------ceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEH--------------SVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~--------------SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~ 371 (378)
++.||++|.|+ ++.|.+ +.+..+++||++|.| .++++.+++.++++|.+..
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~ 87 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGA 87 (109)
T ss_pred ceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECC
Confidence 35566666665 555543 355677788888888 6677788888888887743
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=70.28 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=7.6
Q ss_pred eEEecCcEEc-ceEE
Q 017030 322 SIISHGSFIT-SSFI 335 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i 335 (378)
..||++|.|+ ++.|
T Consensus 78 v~IG~~~~I~e~vtI 92 (255)
T PRK12461 78 LEIGDRNVIREGVTI 92 (255)
T ss_pred eEECCceEECCccEE
Confidence 4455556555 4544
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.7e-05 Score=61.05 Aligned_cols=71 Identities=14% Similarity=0.012 Sum_probs=44.2
Q ss_pred CCcEEccCCCCCCceeeCceee------eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEeeeeeCCCCe
Q 017030 299 TKPIYTSRRNLPPSKIDDSKIV------DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKVSPANPLCR 362 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~~~~i~------~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~sIi~~~~~ 362 (378)
...+...+.+..+++|.+-.+. ++.||++|.|+ ++.|.- ..||++|.||.|+.| +..|+++++
T Consensus 19 GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I-gv~IG~~~v 97 (147)
T cd04649 19 GTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI-GISLGDNCI 97 (147)
T ss_pred CcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE-eEEECCCCE
Confidence 3334444444444444333333 37788888887 666542 467777888888887 677777777
Q ss_pred Eeeeeeee
Q 017030 363 RIWKCSSL 370 (378)
Q Consensus 363 ~~~~~~~~ 370 (378)
|+.++.+.
T Consensus 98 IGaGsvV~ 105 (147)
T cd04649 98 VEAGLYVT 105 (147)
T ss_pred ECCCCEEe
Confidence 77776543
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.5e-05 Score=63.54 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=38.3
Q ss_pred eeEEecCcEEc-ceEEe--------eceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeeeE
Q 017030 321 DSIISHGSFIT-SSFIE--------HSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~--------~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~~ 374 (378)
++.||+||.|+ ++.|- .+.||++|.||.++.|.+ +.|++++.|+.++.+..+|.
T Consensus 67 ~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv~ 130 (146)
T PRK10191 67 NVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDSVP 130 (146)
T ss_pred CcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCccC
Confidence 34455555555 44442 258899999999988875 88888888888888877653
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.3e-05 Score=63.69 Aligned_cols=67 Identities=10% Similarity=-0.065 Sum_probs=37.6
Q ss_pred ccCCCCCCcee-eCceee---eeEEecCcEEc-ceEEee-------------------ceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEH-------------------SVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~-------------------SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.+..|+.+++| .++.+. +..||++|.|+ ++.|.. .+||++|.||.++.|. ++.|+
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG 153 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIG 153 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEEC
Confidence 35666777776 455553 35677777777 666641 3566666666665554 24444
Q ss_pred CCCeEeeeeeee
Q 017030 359 PLCRRIWKCSSL 370 (378)
Q Consensus 359 ~~~~~~~~~~~~ 370 (378)
+++.|+.++.+.
T Consensus 154 ~~~vIgagsvV~ 165 (203)
T PRK09527 154 DNSVIGAGSVVT 165 (203)
T ss_pred CCCEECCCCEEc
Confidence 444444444433
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.2e-05 Score=58.51 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=32.9
Q ss_pred eEEecCcEEc-ceEEe----------------eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 322 SIISHGSFIT-SSFIE----------------HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~----------------~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
..||++|.|+ ++.|. ...|+++|.||.++.|. ++.|++++.|+.+|.+..+
T Consensus 24 i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~ 92 (107)
T cd05825 24 VTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD 92 (107)
T ss_pred eEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc
Confidence 5666666666 55542 35677777777777775 4666666666666666544
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.3e-05 Score=64.40 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=35.8
Q ss_pred CCCCCCcee-eCceee---eeEEecCcEEc-ceEEe----------------eceEcCCCEECCCCEEe-eeeeCCCCeE
Q 017030 306 RRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIE----------------HSVVGIRSRINANVHLK-VSPANPLCRR 363 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~----------------~SiI~~~~~Ig~~~~i~-~sIi~~~~~~ 363 (378)
..|++++.| +++.+. +..||++|.|+ ++.|. ..+||++|.||.++.|. ++.|++++.|
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI 151 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV 151 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence 445566666 455553 46777777777 66552 23667777777665552 3444444444
Q ss_pred eeeee
Q 017030 364 IWKCS 368 (378)
Q Consensus 364 ~~~~~ 368 (378)
+.++.
T Consensus 152 ga~sv 156 (182)
T PRK10502 152 GARSS 156 (182)
T ss_pred CCCCE
Confidence 44444
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=61.97 Aligned_cols=65 Identities=15% Similarity=0.007 Sum_probs=30.5
Q ss_pred cCCCCCCcee-eCceeeee---EEecCcEEc-ceEEee-------------ceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 305 SRRNLPPSKI-DDSKIVDS---IISHGSFIT-SSFIEH-------------SVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~s---~Ig~~~~I~-~~~i~~-------------SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
+..|+++++| .++.+.+. .||++|.|+ ++.+.. ..++..++||++|.| .+++|.++++|++
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 152 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 152 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECC
Confidence 3444445444 23443322 567777776 665531 122233444444444 3344455555555
Q ss_pred eeee
Q 017030 366 KCSS 369 (378)
Q Consensus 366 ~~~~ 369 (378)
+|++
T Consensus 153 ~~vI 156 (183)
T PRK10092 153 NVVV 156 (183)
T ss_pred CCEE
Confidence 5554
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.2e-05 Score=63.84 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=22.9
Q ss_pred ceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 338 SVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
++|+++|.||.++.|. ++.|++++.|+.++.+..+
T Consensus 131 v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~ 166 (192)
T PRK09677 131 VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS 166 (192)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc
Confidence 4567777777777665 4666666666666666544
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00031 Score=70.07 Aligned_cols=222 Identities=17% Similarity=0.171 Sum_probs=121.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceee---cCeeeeeeeehhhhhhc-----------CC-cEEEEEee-cChhhHH
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINS-----------GI-NKVYILTQ-YNSASLN 70 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi---~g~~pli~~~l~~l~~~-----------gi-~~I~iv~~-~~~~~i~ 70 (378)
.++.+|+||||.||||+ ...||.++|+ .|+ ++++..++.+.+. +. --.+|-++ ...+...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 56788999999999998 7889999998 378 8999999887553 11 13466665 4456688
Q ss_pred HHHHhhccCCCCc---c-cCCceEEEeccc-cC---CC--cCC-CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcC
Q 017030 71 RHLARAYNYGSGV---T-FGDGCVEVLAAT-QT---PG--EAG-KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (378)
Q Consensus 71 ~~l~~~~~~~~~~---~-~~~~~i~i~~~~-~~---~~--~~~-~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~g 137 (378)
+++.++..++-.. . |....+-.+... .. .. ... ...+.|.|+....... .+++....+.+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 8887643232211 0 000000011000 00 00 000 1134566655443322 233333344689999999
Q ss_pred CeEEec-CHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE--CCCCC----EEEEEecCCccchhcccccchhcccc
Q 017030 138 DHLYRM-DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR----VLSFSEKPKGKDLKAMAVDTTVLGLS 210 (378)
Q Consensus 138 D~~~~~-d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~----v~~~~ek~~~~~~~~~~~~~~~~~~~ 210 (378)
|..... -.-.++.++..++.++.+.+.+... ...-|.+.. ..+|+ ++++.|.+..-....- .+..+-
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~-p~g~l~--- 356 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGH-PDGDVN--- 356 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHhccC-CCcccc---
Confidence 993322 2367788888899998888776632 345665543 22343 3455555432110000 000000
Q ss_pred ccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 211 KQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 211 ~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.....+..-.|+..-+++-..+.+.+++
T Consensus 357 -~~~~~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 -DETGYSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred -cccccccCCCCceeeEeeHHHHHHHHHh
Confidence 0000112224788888998888777764
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.6e-05 Score=62.85 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=21.9
Q ss_pred eeEEecCcEEc-ceEEe---eceEcCCCEECCCCEE
Q 017030 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHL 352 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~---~SiI~~~~~Ig~~~~i 352 (378)
+..||++|.|+ ++.|. +..||++|.|++++.|
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I 106 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYL 106 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEE
Confidence 46667777776 66554 4677887777777766
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=55.57 Aligned_cols=70 Identities=14% Similarity=-0.075 Sum_probs=34.2
Q ss_pred EEccCCCCCCceeeC---ceee-eeEEecCcEEc-ceEEeece---EcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 302 IYTSRRNLPPSKIDD---SKIV-DSIISHGSFIT-SSFIEHSV---VGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 302 i~~~~~i~~~~~i~~---~~i~-~s~Ig~~~~I~-~~~i~~Si---I~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
+.+++.+++++++.. +.+. ++.||++|.|+ ++.|.+.. +..+++||+++.|. ++.+.++++|+++|.+.-
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~ 83 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGA 83 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECC
Confidence 445555666666621 2222 24444444444 33332222 13333466666665 356666666666666643
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00025 Score=56.92 Aligned_cols=69 Identities=7% Similarity=0.021 Sum_probs=41.2
Q ss_pred CcEEccCCCCCCcee-eCcee-eeeEEecCcEEcceEE-eeceEcCCCEECCCCEEeeeeeCCC----CeEeeeeeee
Q 017030 300 KPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKVSPANPL----CRRIWKCSSL 370 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~~~~i-~~SiI~~~~~Ig~~~~i~~sIi~~~----~~~~~~~~~~ 370 (378)
..+...+.|++++.| .++.+ -|+.||++|.|.+ .+ .+++|+.+|.||+++.|. +.+..+ ++|+++|.|.
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEEC
Confidence 334444455555555 23333 2444555555431 22 358999999999999998 555666 6666666665
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00017 Score=60.34 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=54.3
Q ss_pred CCcEEccCCCCCCceee---Ccee-eeeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKI-VDSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i-~~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...|++.++|+++..|+ +..| +.++||+||.|- ++++ .+=.||+||.||.||+|-+ =-||+|++|
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEE
Confidence 45678888888888884 2333 345556655554 3333 3448999999999999877 558999999
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+-+++...+|
T Consensus 147 GA~sVVlkdV 156 (194)
T COG1045 147 GAGSVVLKDV 156 (194)
T ss_pred CCCceEccCC
Confidence 9999888765
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=64.63 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=24.0
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
+++||+||.|| ++.| -++.||++|+||.|+.|...
T Consensus 212 ~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kd 248 (294)
T PLN02694 212 HPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID 248 (294)
T ss_pred ccEECCCeEECCeeEECCCCEECCCCEECCCCEECCc
Confidence 46777777777 6655 56777777777777777654
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.4e-05 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=16.3
Q ss_pred eEEecCcEEc-ceE-EeeceEcCCCEECCCCEEe
Q 017030 322 SIISHGSFIT-SSF-IEHSVVGIRSRINANVHLK 353 (378)
Q Consensus 322 s~Ig~~~~I~-~~~-i~~SiI~~~~~Ig~~~~i~ 353 (378)
+.||++|.|+ ++. ..++.|+++|.|++++.|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4566666665 433 2345555555555555543
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00023 Score=60.36 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred CcccceeecC--eeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCcc
Q 017030 29 RAKPAVPIGG--AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (378)
Q Consensus 29 ~pK~llpi~g--~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 106 (378)
.+|+|+++.| + |||+|+++.+. ..+.+|+|+++... .+ .. .+ +.++.+...
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~---------~~---~~~i~d~~~-------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE---------LP---APVLRDELR-------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc---------CC---CCEeccCCC--------
Confidence 5999999999 9 99999999766 46899999987542 11 00 01 123322211
Q ss_pred ccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
..|...++..+....... ..+.+++++||+ ++..+ +..+++.+.
T Consensus 56 g~gpl~~~~~gl~~~~~~---~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 56 GLGPLPATGRGLRAAAEA---GARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred CCCcHHHHHHHHHHHHhc---CCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 136666665554433110 148999999999 55666 666666543
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0003 Score=63.38 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=31.1
Q ss_pred eeEEecCcEEc-ceEE----e-e----ceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFI----E-H----SVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i----~-~----SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
.++||++|.|| ++.| . + ..||++|.||.|+.| +..|+++++|+.+..+
T Consensus 224 GavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavV 281 (341)
T TIGR03536 224 GVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYI 281 (341)
T ss_pred CCEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE-eeEECCCCEECCCCEE
Confidence 35566666666 4433 2 1 567777888888887 7777777777776644
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00036 Score=56.90 Aligned_cols=35 Identities=6% Similarity=-0.113 Sum_probs=18.7
Q ss_pred eceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeee
Q 017030 337 HSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~ 371 (378)
+++||++|.||.+|.| .++.|++++.|+.++.+..
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 4555555555555555 3455555555555555433
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0004 Score=57.84 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=15.3
Q ss_pred EEecCcEEc-ceEEee-ceEcCCCEECCCCEEee
Q 017030 323 IISHGSFIT-SSFIEH-SVVGIRSRINANVHLKV 354 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~ 354 (378)
+||++|.|+ ++.|.. +.||++|+||.++.|..
T Consensus 115 ~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 115 TVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred EECCCcEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 555555555 433322 44555555555544443
|
Cysteine biosynthesis |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00044 Score=58.08 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=14.3
Q ss_pred eEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee
Q 017030 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV 354 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~ 354 (378)
+.||++|.|+ ++.| .++.||++|+||.++.|..
T Consensus 119 v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred cEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 4455555554 3332 2344444444444444443
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00057 Score=58.86 Aligned_cols=67 Identities=15% Similarity=-0.031 Sum_probs=38.8
Q ss_pred EccCCCCCCceeeCceeeeeEEecCcEEc-ceEEe---eceEcCCCEECCCCEEee-------------------eeeCC
Q 017030 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKV-------------------SPANP 359 (378)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~---~SiI~~~~~Ig~~~~i~~-------------------sIi~~ 359 (378)
..++.|.+|+++.- -.|..||+++.|+ ++.|. +..||++|.|+++|.|.. .+|++
T Consensus 59 g~~~~I~~~~~~~~--g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 59 GENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CCCcEEcCCEEEee--CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 33445555555520 0345566666665 55552 357888888888888752 45666
Q ss_pred CCeEeeeeeeee
Q 017030 360 LCRRIWKCSSLC 371 (378)
Q Consensus 360 ~~~~~~~~~~~~ 371 (378)
+|.|+.+|.+.+
T Consensus 137 ~v~IG~~~~I~~ 148 (203)
T PRK09527 137 NVWIGSHVVINP 148 (203)
T ss_pred CcEECCCCEEcC
Confidence 666666655543
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00069 Score=60.75 Aligned_cols=49 Identities=20% Similarity=0.102 Sum_probs=33.6
Q ss_pred eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
+++||++|.|+ ++.|-. ..||++|.||.||.| +..|+++|+|+-|..+-
T Consensus 199 dvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVt 257 (319)
T TIGR03535 199 GVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVT 257 (319)
T ss_pred CCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEe
Confidence 45566666666 555332 678888888888888 77777777777766543
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00086 Score=58.84 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=34.0
Q ss_pred eEEecCcEEc-ceEE---------eeceEcCCCEECCCC-EEeeeeeCCCCeEeeeeeeeeee
Q 017030 322 SIISHGSFIT-SSFI---------EHSVVGIRSRINANV-HLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~-~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
.+||+||.|| |+.| .-.+|++||-||.|+ .+++.++++||.|+-|..+-+|+
T Consensus 157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 4566666666 5544 335677777777776 66667777777777776666654
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00067 Score=55.19 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=34.4
Q ss_pred eEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeee
Q 017030 322 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKC 367 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~ 367 (378)
+.||++|.|+ ++.+. +..||++++||.++.|.+.+-.....++..+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv~~~~~v~G~pA 140 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDSVPDNALVVGEKA 140 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCccCCCcEEEccCc
Confidence 5788888888 76665 5888889999988888887665555554443
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00075 Score=55.79 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=40.7
Q ss_pred cCCCCCCcee-eCceeeeeEEecCcEEc-ceEEee-ceEcCCCEECCCCEEeeeeeCCC
Q 017030 305 SRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKVSPANPL 360 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~sIi~~~ 360 (378)
.+.|++.+.| .++.|..|.||++|.|| ++.|-| +.||++|.||.|+.+...-..|.
T Consensus 72 p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~ 130 (176)
T COG0663 72 PVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPG 130 (176)
T ss_pred CeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCC
Confidence 3556667777 46777889999999999 876666 77777777777777766544443
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00075 Score=57.92 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=45.8
Q ss_pred CCCCCCcee-eCceee---eeEEecCcEEc-ceEEeece----------------------EcCCCEECCCCEE-eeeee
Q 017030 306 RRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEHSV----------------------VGIRSRINANVHL-KVSPA 357 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~Si----------------------I~~~~~Ig~~~~i-~~sIi 357 (378)
..++.++.| .++.+. ++.||+||.|+ ++.|.+.. -...++||++|.| .+++|
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i 145 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI 145 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence 344455555 344442 56788888888 66665421 1235889999999 56999
Q ss_pred CCCCeEeeeeeeeee
Q 017030 358 NPLCRRIWKCSSLCS 372 (378)
Q Consensus 358 ~~~~~~~~~~~~~~~ 372 (378)
+++++|+++|.+...
T Consensus 146 ~~g~~Ig~~~~Iga~ 160 (192)
T PRK09677 146 LPGVSIGNGCIVGAN 160 (192)
T ss_pred cCCCEECCCCEECCC
Confidence 999999999998643
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00038 Score=41.25 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=13.4
Q ss_pred EEecCcEEc-ceEEeeceEcCCCEECCCCEE
Q 017030 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHL 352 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i 352 (378)
.||++|.|+ ++.| ...|+++|+|++|+.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 466666666 5444 4555555555555554
|
... |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00031 Score=42.29 Aligned_cols=34 Identities=15% Similarity=-0.058 Sum_probs=23.8
Q ss_pred eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 337 HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
|+.|++++.|++++.|. ++.|++++.|+.+|.+.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 46777888888887744 37778888887777664
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.001 Score=59.68 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=14.0
Q ss_pred EccCCCCCCcee-eCceee---eeEEecCcEEc
Q 017030 303 YTSRRNLPPSKI-DDSKIV---DSIISHGSFIT 331 (378)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~ 331 (378)
.....|++.+.| .++.|. ..+||++|+||
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IG 171 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIE 171 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEEC
Confidence 344455555555 233442 34555555555
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00081 Score=62.24 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=37.2
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+++||+||.|| ++.| .+..||++++||.|+.|...|--..+.+|.-+.+
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~PArv 328 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPARL 328 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECCCeEE
Confidence 47899999999 8766 5888999999999999988755444444444433
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=50.57 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=15.0
Q ss_pred eceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 337 HSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
++.|+.++.|..+++|.+ |+|++++.+-.
T Consensus 62 ~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~ 91 (107)
T cd05825 62 GAWVAAEAFVGPGVTIGEGAVVGARSVVVR 91 (107)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEEeC
Confidence 345555555555555544 55555555543
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=58.78 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=18.3
Q ss_pred eeceEcCCCEECCCCEEeeeeeCCC----CeEeeeeee
Q 017030 336 EHSVVGIRSRINANVHLKVSPANPL----CRRIWKCSS 369 (378)
Q Consensus 336 ~~SiI~~~~~Ig~~~~i~~sIi~~~----~~~~~~~~~ 369 (378)
..++|+++|.||.+|.| .+.+..+ ++|+++|.+
T Consensus 223 sGavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lI 259 (341)
T TIGR03536 223 AGVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLL 259 (341)
T ss_pred cCCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEE
Confidence 35566666666666666 4444444 555555544
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0034 Score=54.14 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=8.7
Q ss_pred eceEcCCCEECCCCEEe
Q 017030 337 HSVVGIRSRINANVHLK 353 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~ 353 (378)
..+||+|++|.+++.|.
T Consensus 81 ~l~IG~~n~IRE~vTi~ 97 (260)
T COG1043 81 RLIIGDNNTIREFVTIH 97 (260)
T ss_pred EEEECCCCeEeeEEEEe
Confidence 34455555555555553
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0012 Score=55.95 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=48.7
Q ss_pred CCcEEccCCCCCCcee-eCc--ee-eeeEEecCcEEc-------------ceEE-eeceEcCCCEECCCCEEe-eeeeCC
Q 017030 299 TKPIYTSRRNLPPSKI-DDS--KI-VDSIISHGSFIT-------------SSFI-EHSVVGIRSRINANVHLK-VSPANP 359 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-~~~--~i-~~s~Ig~~~~I~-------------~~~i-~~SiI~~~~~Ig~~~~i~-~sIi~~ 359 (378)
+..+...+.+..++.| +.+ +| .++.|++||.|. +..+ ....||++|.||.+|.|. ++.|++
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 152 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 152 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECC
Confidence 3345555666666666 333 33 367788887773 1122 466788888888888875 588888
Q ss_pred CCeEeeeeeeeeee
Q 017030 360 LCRRIWKCSSLCSV 373 (378)
Q Consensus 360 ~~~~~~~~~~~~~~ 373 (378)
++.|+.++.+..++
T Consensus 153 ~~vIgagsvV~~di 166 (183)
T PRK10092 153 NVVVASGAVVTKDV 166 (183)
T ss_pred CCEECCCCEEcccc
Confidence 88888887765543
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0014 Score=60.21 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=33.2
Q ss_pred EccCCCCCCcee-eCceee---------eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 303 YTSRRNLPPSKI-DDSKIV---------DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i~---------~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
..+++|+.++.| .++++. ...||+||.|| ++.| -+..||+|+.||.|+.|...
T Consensus 229 G~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD 293 (355)
T PLN02739 229 GETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD 293 (355)
T ss_pred CCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC
Confidence 334445555555 344442 35788888888 6555 45777777777777777654
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00064 Score=53.36 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=47.8
Q ss_pred EEccCCCCCCcee--eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 302 IYTSRRNLPPSKI--DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 302 i~~~~~i~~~~~i--~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
+..+++|.||-.+ .+...-+..||+++.|+ +|.|.-..||.-+++|+||.|.+ |+|-+=++|.|+.+++
T Consensus 63 ~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlP 135 (184)
T KOG3121|consen 63 LKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLP 135 (184)
T ss_pred eccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccC
Confidence 3445555555555 45555677788888888 78888888888888888777755 6666666666666554
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.083 Score=49.38 Aligned_cols=340 Identities=15% Similarity=0.166 Sum_probs=168.6
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeeh---hhhhhc-CCcEEEEE-eecC-hhhHHHHHHhhccCC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM---SNCINS-GINKVYIL-TQYN-SASLNRHLARAYNYG 80 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l---~~l~~~-gi~~I~iv-~~~~-~~~i~~~l~~~~~~~ 80 (378)
+++..+=|-||.||-|+ ...||+++++-+....++-++ ++|.+. +++-=+|+ -+++ .++.+..++++....
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 34556669999999998 788999999976547776555 455442 33321222 2444 445666666553211
Q ss_pred ------CCcccCC-ceEEEeccccCCCc-CCCccc-cCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEEe-cCHHHH
Q 017030 81 ------SGVTFGD-GCVEVLAATQTPGE-AGKRWF-QGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYR-MDYMDF 148 (378)
Q Consensus 81 ------~~~~~~~-~~i~i~~~~~~~~~-~~~~~~-~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~~-~d~~~~ 148 (378)
+.++|.. ..-..++.....++ ....|| .|.|+-..... ..++.....+.+.+.|.+.|.+.. .|+ .+
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~I 257 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-NI 257 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-HH
Confidence 1111211 01122332221111 223454 46654432221 112111122368999999999764 454 46
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCCEEEE--EecCCccchhcccccchhccccccccccCcceeeeeEE
Q 017030 149 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF--SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 149 l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~--~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
+++....+..-.|=+++... ..--|-..++-+|++..+ ..-|.+.. ..+.-.. .-...++.--
T Consensus 258 Ln~~i~~~~ey~MEvTdKT~--aDvKgGtLi~y~G~lrlLEiaQVP~ehv-~eFkS~k------------kFkifNTNNl 322 (498)
T KOG2638|consen 258 LNHVINNNIEYLMEVTDKTR--ADVKGGTLIQYEGKLRLLEIAQVPKEHV-DEFKSIK------------KFKIFNTNNL 322 (498)
T ss_pred HHHHhcCCCceEEEecccch--hhcccceEEeecCEEEEEEeccCChhHh-hhhccce------------eEEEeccCCe
Confidence 66666666666555554332 111233333345655443 33333211 0000000 1124566666
Q ss_pred EEeHHHHHHHHhhhCCCC--------Cchhcccccccc------c--ccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 227 LFKKEILLNLLRWRFPTA--------NDFGSEIIPASA------N--EQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 227 ~~~~~~l~~~l~~~~~~~--------~~~~~~~l~~l~------~--~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
.+.-..+++++++..-.+ .+...++++... + ...+....-...|..+.+-.|++-....+-.-.
T Consensus 323 WinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld 402 (498)
T KOG2638|consen 323 WINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLD 402 (498)
T ss_pred EEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeecc
Confidence 677777777766521110 000112222211 1 122333333446777777777766554443221
Q ss_pred CCc-c----ccCCCCcEEc-----------cCCC-CCCcee--eCcee-eeeEEecCcEEcceEEeeceEcCCCEECCCC
Q 017030 291 PMF-S----FYDATKPIYT-----------SRRN-LPPSKI--DDSKI-VDSIISHGSFITSSFIEHSVVGIRSRINANV 350 (378)
Q Consensus 291 ~~~-~----~~~~~~~i~~-----------~~~i-~~~~~i--~~~~i-~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~ 350 (378)
.+. . .+.+..++.. ...+ +.|..+ +.-+| .|...|.|+...|.+|..+-=++.-.|-+|+
T Consensus 403 ~Gsl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gs 482 (498)
T KOG2638|consen 403 NGSLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGS 482 (498)
T ss_pred CCeEEechhhcCCCCCeeecchhhhHHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCC
Confidence 110 0 1111111100 0000 112222 23333 5888999999988777767667777788999
Q ss_pred EEeeeeeCCCCeEee
Q 017030 351 HLKVSPANPLCRRIW 365 (378)
Q Consensus 351 ~i~~sIi~~~~~~~~ 365 (378)
.++|+++..+..|.|
T Consensus 483 VLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 483 VLENKIVSGNLRILE 497 (498)
T ss_pred eeecceEeccccccc
Confidence 999999998887754
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0022 Score=65.82 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=18.0
Q ss_pred eEcCCCEECCCCEE-eeeeeCCCCeEeeeeeee
Q 017030 339 VVGIRSRINANVHL-KVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 339 iI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~ 370 (378)
+||+||.||.++.| .++.|++++.|+.++.+.
T Consensus 162 ~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~ 194 (695)
T TIGR02353 162 TLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQ 194 (695)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEec
Confidence 56666666666555 445555555555555443
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0019 Score=55.70 Aligned_cols=18 Identities=0% Similarity=-0.544 Sum_probs=13.9
Q ss_pred eeeeCCCCeEeeeeeeee
Q 017030 354 VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 354 ~sIi~~~~~~~~~~~~~~ 371 (378)
..+||++++|.+.+.|+-
T Consensus 81 ~l~IG~~n~IRE~vTi~~ 98 (260)
T COG1043 81 RLIIGDNNTIREFVTIHR 98 (260)
T ss_pred EEEECCCCeEeeEEEEec
Confidence 468888888888887764
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0011 Score=39.19 Aligned_cols=31 Identities=13% Similarity=-0.138 Sum_probs=19.0
Q ss_pred ceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 338 SVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
..||++|.||.++.| +..|+++|.|+.||.+
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 467888888888887 5667777777766655
|
... |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0035 Score=64.40 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=32.1
Q ss_pred cCCCCCCceeeCceee---eeEEecCcEEc-ceEE------------eeceEcCCCEECCCCEE-eeeeeCCCCeEeeee
Q 017030 305 SRRNLPPSKIDDSKIV---DSIISHGSFIT-SSFI------------EHSVVGIRSRINANVHL-KVSPANPLCRRIWKC 367 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~---~s~Ig~~~~I~-~~~i------------~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~ 367 (378)
.++|+++++|+...+. -+.||++|.|+ ++.| .+++||++|.||.++.| .++.|++++.|+.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~S 676 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDS 676 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 4556666666432221 24566666666 5544 24555555555555555 334444444444443
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0095 Score=53.61 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=8.2
Q ss_pred ceEcCCCEECCCCEEee
Q 017030 338 SVVGIRSRINANVHLKV 354 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~ 354 (378)
|+||++|.|+.++.|.+
T Consensus 200 vvIGd~~~IgpGvsI~G 216 (319)
T TIGR03535 200 VVVGDGSDIGGGASIMG 216 (319)
T ss_pred CEECCCCEECCCceecc
Confidence 44445555555555333
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=49.68 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=27.9
Q ss_pred eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 337 HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
-+++++.+.+|+++.|.+.|++.++.+.-.|.+-+-|+|-
T Consensus 33 ~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve 72 (277)
T COG4801 33 YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVE 72 (277)
T ss_pred eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEc
Confidence 3466677777777777777777777777777777777764
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.011 Score=52.06 Aligned_cols=61 Identities=10% Similarity=-0.069 Sum_probs=33.5
Q ss_pred CcEEccCCCCCCceeeCc----eeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 300 KPIYTSRRNLPPSKIDDS----KIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i~~~----~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
++|..++.|+.++.|.++ .-.-.+||+||.|| + |.+.+|+.||+||.|.. .+|..+++|.+
T Consensus 157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAn-----s~~veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGAN-----SEVVEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccc-----cceEeeeEeCCCcEEecceEEeCCcceEE
Confidence 445555666666666331 11246899999998 5 44444444444444443 44555555544
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.017 Score=55.65 Aligned_cols=51 Identities=14% Similarity=-0.027 Sum_probs=30.6
Q ss_pred EEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcC-----CCEECCCCEE
Q 017030 302 IYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGI-----RSRINANVHL 352 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~-----~~~Ig~~~~i 352 (378)
+..++.+.+++.+ +++.|.+|.|+.++.|| +|.|.++-+.. +..|-+++.+
T Consensus 281 ~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~~~~~~~~lpd~~~~ 338 (414)
T PF07959_consen 281 CVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSWSILPGLTLPDGVCL 338 (414)
T ss_pred eEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccccccccCcccCCceEE
Confidence 3445666666666 56667777777777777 66666554433 3345455554
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.037 Score=47.54 Aligned_cols=60 Identities=10% Similarity=-0.061 Sum_probs=43.8
Q ss_pred eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeeeE
Q 017030 315 DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 315 ~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~~ 374 (378)
.++.++-.++|+...+| ++.|...+++.+++|+-||++.+ .+..+++-|++..+|-+-++
T Consensus 27 ~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~ 88 (277)
T COG4801 27 KNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLT 88 (277)
T ss_pred ccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEE
Confidence 45666777777777777 77777788888888888888876 55556677777777766543
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.034 Score=45.26 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=25.2
Q ss_pred eeeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 320 VDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 320 ~~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
.++.||++|.|+ ++.| .++.||++|+||.++.|...
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~ 109 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD 109 (145)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 456677777777 6555 46777777777777777765
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.2 Score=39.78 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=65.1
Q ss_pred ceeecCeeeeeeeehhhhhhcC--CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCc
Q 017030 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~g--i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt 110 (378)
++|..|.++++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ... ........ ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3566665589999999999887 7788888876666666666543210 001 11111111 2488
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
+.++..+....+ .+.++++.+|..+..+ +..++..+.
T Consensus 66 ~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 899988887774 5899999999998888 455434433
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.047 Score=43.13 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=23.3
Q ss_pred eeceEcCCCEECCCCEEeeeeeC------CCCeEeeeeee
Q 017030 336 EHSVVGIRSRINANVHLKVSPAN------PLCRRIWKCSS 369 (378)
Q Consensus 336 ~~SiI~~~~~Ig~~~~i~~sIi~------~~~~~~~~~~~ 369 (378)
-+-.||+++-|+++|.+.-.-|+ .++.||++|++
T Consensus 83 fp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVl 122 (184)
T KOG3121|consen 83 FPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVL 122 (184)
T ss_pred eeeeecceEEEecceEeehhhheeeeEeccceeEcCceEh
Confidence 45678999999999888765544 45555555554
|
|
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.054 Score=46.41 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred eeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHH
Q 017030 39 AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118 (378)
Q Consensus 39 ~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~ 118 (378)
+ |||.|+++.+...++.+++++++. +.+.++... ++ +.++.... .|.+.+++.+.
T Consensus 30 ~-~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~---------~~---v~~i~~~~----------~G~~~si~~al 84 (195)
T TIGR03552 30 L-AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN---------LG---APVLRDPG----------PGLNNALNAAL 84 (195)
T ss_pred H-HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh---------cC---CEEEecCC----------CCHHHHHHHHH
Confidence 5 899999999999887888887763 334433321 11 22332111 28899999998
Q ss_pred HHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHH
Q 017030 119 WLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (378)
Q Consensus 119 ~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h 152 (378)
+++... .+.++++.||+ ++..+ +.++++..
T Consensus 85 ~~~~~~----~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 85 AEAREP----GGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred HHhhcc----CCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 876421 25899999999 44544 77777754
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.035 Score=44.17 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=27.1
Q ss_pred EEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeee
Q 017030 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLC 371 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~ 371 (378)
+||.+-+.+ ||..+---+|++-+|+..|.+.+ +++.++|.||-+|.+..
T Consensus 80 iIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 80 IIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred EEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence 456655555 55555555555555555555543 55555566666665544
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.056 Score=45.44 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.3
Q ss_pred EEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 323 IISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
.||+|+.|| |++| -|=-||+|+.||.|+.+...
T Consensus 121 tIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 121 TIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred ccCCCeEECCCCEEEcceEECCCCEECCCceEccC
Confidence 677777777 6543 45568889999988888774
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.14 Score=43.91 Aligned_cols=37 Identities=16% Similarity=-0.079 Sum_probs=15.8
Q ss_pred eEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeeeEe
Q 017030 339 VVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 339 iI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~~~ 375 (378)
.||+||-||.|+.|-+ --||+|++|+-|....-.|-|
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~ 239 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPP 239 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccceEEeccCC
Confidence 4445555554443322 334444444444444333333
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.6 Score=35.25 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=67.4
Q ss_pred ceeecCeeeeeeeehhhhhhc--CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCc
Q 017030 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~--gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt 110 (378)
.+|.-|....|..+++.+.+. ...+|+|+-+.......+.+.+... . ...++++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~--~-----~~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE--S-----DPNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC--C-----STTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc--c-----cccccccccccc---------ccc
Confidence 356666545777888887775 4457777764333344444443321 0 012444433322 478
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++..+.+... .+.++++..|.+...+ +..+++.+.+.+.++.+...
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 888888888876 4799999999999888 78888888876776544443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.54 Score=39.95 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=18.2
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV 354 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~ 354 (378)
.++||++|-|| ++.| -...||+|++||.++.+..
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 47888888888 5322 2234444444444444443
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.37 Score=38.53 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=14.1
Q ss_pred eEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 339 VVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 339 iI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
++.++|.||.+|.|...-..|..++..
T Consensus 115 ~vssgC~vGA~c~v~~~q~lpent~vY 141 (190)
T KOG4042|consen 115 SVSSGCSVGAKCTVFSHQNLPENTSVY 141 (190)
T ss_pred EEcCCceeccceEEecccccCCcceEE
Confidence 334566666666665554444444433
|
|
| >PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins | Back alignment and domain information |
|---|
Probab=88.71 E-value=1.2 Score=33.68 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=41.6
Q ss_pred eCceeeeeEEecCcEEcceEEeeceEc-CCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 315 DDSKIVDSIISHGSFITSSFIEHSVVG-IRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 315 ~~~~i~~s~Ig~~~~I~~~~i~~SiI~-~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
+++.++..+-++.+.|.|. +...+.. +.+.|...++|.+.|-.+...|.+++.+++++
T Consensus 41 ~~~~v~G~i~~~~~~i~G~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G~~ 99 (101)
T PF04519_consen 41 GNGEVKGDIKADDVIISGS-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASINGNV 99 (101)
T ss_pred CCCEEEEEEEEeEEEEcCE-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEEEE
Confidence 3455555555666666543 6666666 55678888888888888888888888888875
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.02 E-value=0.75 Score=39.58 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=19.5
Q ss_pred eEEecCcEEc-c-eEEeeceEcCCCEECCCCEEee
Q 017030 322 SIISHGSFIT-S-SFIEHSVVGIRSRINANVHLKV 354 (378)
Q Consensus 322 s~Ig~~~~I~-~-~~i~~SiI~~~~~Ig~~~~i~~ 354 (378)
=.||+||-|| + +.+=|--||+|++|+.|+.+..
T Consensus 201 P~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 201 PKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred CcccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 3688888888 5 3334455555555555555443
|
|
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=84.67 E-value=9.7 Score=30.60 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=61.0
Q ss_pred eeecCeeeeeeeehhhhhhc--CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcH
Q 017030 34 VPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~--gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~ 111 (378)
+|.-|+..++..+++.+.+. ...+++|+.........+.+.+... .+.++.... ..|.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~~---------~~g~~ 63 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNGE---------NLGFG 63 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecCC---------CcChH
Confidence 45556556778888888765 3457777765444444455543220 133332111 14788
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
.++..+....+ .+.++++..|..+..+ +..+++.+.+.
T Consensus 64 ~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 64 AGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 88888887774 5899999999988877 67777755544
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=1.3 Score=47.02 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=34.7
Q ss_pred eEEeeceEcCCCEECCC-CEEeeeeeCCCCeEeeeeeeeee
Q 017030 333 SFIEHSVVGIRSRINAN-VHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 333 ~~i~~SiI~~~~~Ig~~-~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
+.|.||+|..++++|++ +.|++|.|+++.+|+++|++-+.
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 56889999999999988 55899999999999999998654
|
|
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=82.86 E-value=9 Score=33.26 Aligned_cols=96 Identities=10% Similarity=0.191 Sum_probs=59.2
Q ss_pred eeecCee-eeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcHH
Q 017030 34 VPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (378)
Q Consensus 34 lpi~g~~-pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~ 112 (378)
+|.-|.. +.|..+|+.+.+....+|+|+.....+...+.+.... . . ..+.++... . .|-+.
T Consensus 6 Ip~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~--~----~--~~~~v~~~~-~---------~g~~~ 67 (235)
T cd06434 6 IPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV--K----Y--GGIFVITVP-H---------PGKRR 67 (235)
T ss_pred EeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc--c----C--CcEEEEecC-C---------CChHH
Confidence 4555554 5677778887765456887777545545444442211 0 0 012333211 1 36778
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 113 al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
++..+....+ .+.++++.+|.....+ +..+++.+.
T Consensus 68 a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 8877766654 5899999999999888 677777654
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.82 E-value=0.76 Score=44.11 Aligned_cols=66 Identities=29% Similarity=0.484 Sum_probs=45.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecC---eeeeeeeehhhhhh----------cCCc-EEEEEe-ecChhhHH
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG---AYRLIDVPMSNCIN----------SGIN-KVYILT-QYNSASLN 70 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g---~~pli~~~l~~l~~----------~gi~-~I~iv~-~~~~~~i~ 70 (378)
..+..++++|||.|||+. ...||.+.|++- + .++++..+.+.. .|.+ ..+|.+ ....+...
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~-slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~ 170 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGK-SLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATL 170 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCcccc-chhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhH
Confidence 456789999999999998 789999999985 4 577777665432 1211 234555 34455667
Q ss_pred HHHHh
Q 017030 71 RHLAR 75 (378)
Q Consensus 71 ~~l~~ 75 (378)
+++..
T Consensus 171 ~~f~~ 175 (477)
T KOG2388|consen 171 EYFES 175 (477)
T ss_pred hHHhh
Confidence 77764
|
|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=80.53 E-value=11 Score=33.15 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.|-+.++..+..... .+.++++.+|...+.+ +.++++...+.++++...
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 477888887776654 4899999999987776 778888766666665443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 378 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-109 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 2e-45 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 3e-06 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 5e-06 | ||
| 1tzf_A | 259 | X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph | 9e-05 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-04 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 2e-04 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-04 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 5e-04 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 569 bits (1470), Expect = 0.0
Identities = 203/355 (57%), Positives = 269/355 (75%), Gaps = 7/355 (1%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
++ +R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+
Sbjct: 13 LDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 72
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WL
Sbjct: 73 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWL 130
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FE+ + + LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+
Sbjct: 131 FEEHT---VLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID 187
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
EGR++ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +
Sbjct: 188 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 247
Query: 241 FPTANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDA 298
FP ANDFGSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD
Sbjct: 248 FPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 307
Query: 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK 353
+ PIYT R LPPSK+ D+ + DS+I G I + I HSVVG+RS I+ ++
Sbjct: 308 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 362
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 490 bits (1264), Expect = e-174
Identities = 125/371 (33%), Positives = 190/371 (51%), Gaps = 41/371 (11%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ AR A +L GG G+RL LT +RAKPAV GG R+ID +SN +NSGI ++ + T
Sbjct: 7 QPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVAT 66
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
QY + SL RHL R +++ + ++L A+Q E +W++GTADAV Q + E
Sbjct: 67 QYKAHSLIRHLQRGWDFFRP--ERNESFDILPASQRVSE--TQWYEGTADAVYQNIDIIE 122
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
E ++IL+GDH+Y+MDY +Q H SGAD+TI CL + A+ FG+M +N +
Sbjct: 123 PYA---PEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK 179
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
++ F EKP D + E +ASMG+Y+F + L+ +R
Sbjct: 180 DEIIDFIEKP--ADPPGI------------PGNEGFALASMGIYVFHTKFLMEAVRRDAA 225
Query: 243 ---TANDFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTA 288
++ DFG +IIP A+ F D YW D+GTI ++++AN+ LT
Sbjct: 226 DPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTD 285
Query: 289 HPPMFSFYDATKPIYTSRRNLPPSKIDDS------KIVDSIISHGSFITSSFIEHSVVGI 342
P YD + PI+T PP+K V S++S I+ + + S++
Sbjct: 286 VVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFT 345
Query: 343 RSRINANVHLK 353
R N+ L+
Sbjct: 346 GVRANSYSRLE 356
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 4e-24
Identities = 41/277 (14%), Positives = 77/277 (27%), Gaps = 72/277 (25%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGG---AYRLIDVPMSNCINSGINKVYILTQYNSA 67
AVIL G GTRL + KP V +GG R + ++ +++ I+ +
Sbjct: 21 AVILAAGLGTRLGGVP----KPLVRVGGCEIILRTM-----KLLSPHVSEFIIVASRYAD 71
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK 127
++ L + G V +G ++ ED
Sbjct: 72 DIDAFLK---DKGFNYKI------VRHDRPE---------KGNGYSLLVAKNHVEDR--- 110
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
++ GDH+Y F++ + I + +++ + GRV
Sbjct: 111 ----FILTMGDHVYS---QQFIEKAVRGEGVIAD--REPRFVDIGEATKIRVED-GRVAK 160
Query: 188 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247
+ + D G ++ I D
Sbjct: 161 IGKDLREFDC-----------------------VDTGFFVLDDSI-FEHA----EKLRDR 192
Query: 248 GSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283
+ + Y+ + W D+ T AN
Sbjct: 193 EEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-20
Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 67/280 (23%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y +
Sbjct: 28 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 86
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ +G V ++ + ++
Sbjct: 87 YLKEK---------YGVRLVFNDKYADY----------NNFYSLYLV-------KEELAN 120
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
+I + ++L++ + + + T + +D ++ + ++ +V
Sbjct: 121 SYVIDADNYLFKNMFRNDLTRS-------TYFSVYREDC--TNEWFLVYGDDYKVQDIIV 171
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL------LNLLRWRFPTA 244
K + ++ GV + ++
Sbjct: 172 DS--KAGRILS----------------------GVSFWDAPTAEKIVSFIDKAYVSGEFV 207
Query: 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEAN 283
+ + ++ + E + +I +++ + +
Sbjct: 208 DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 247
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 57/366 (15%), Positives = 108/366 (29%), Gaps = 115/366 (31%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
A IL G+G RL P+T R K VPI P+ GI + ++
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILSK------PLIEYQIEYLRKCGIRDITVIVSSK 56
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + + V +GT A+
Sbjct: 57 NKEYFEKKLKEISI------------VTQKDD---------IKGTGAAILS--------- 86
Query: 126 NKVIEDVLILSGDHLY--RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
K ++ LI+ GD + + + + I + + + D+G++ ++N+
Sbjct: 87 AKFNDEALIIYGDLFFSNEKEICNIITLKEN-----AIIGVKVSN--PKDYGVLVLDNQN 139
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+ EKP + + + G+Y +I
Sbjct: 140 NLSKIIEKP----------EIP-------PSNL----INAGIYKLNSDIF---------- 168
Query: 244 ANDFGSEIIPA-SANEQF----------------LKAYLFNDYWEDIGTIRSFFEANLAL 286
+ S +E+ +K + YW DIG + + N
Sbjct: 169 ------TYLDKISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVN-KW 221
Query: 287 TAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRI 346
+FS + + + I++ D+ I G++I +G S I
Sbjct: 222 ALDNLVFSQNLGN--VEDNVKIKGKVIIEE----DAEIKSGTYIEGP----VYIGKGSEI 271
Query: 347 NANVHL 352
N +L
Sbjct: 272 GPNSYL 277
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-12
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 31/153 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+I+ GG GTR+ + KP + + G LID +S + S +N ++I T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
++ AY + T G +G + + + F +P
Sbjct: 58 EYINSAYKDYKNIVV----------IDTSG-------KGYIEDLNECIGYFSEP------ 94
Query: 131 DVLILSGD--HLYRMDYMDFVQNHRQSGADITI 161
L++S D +L V A
Sbjct: 95 -FLVVSSDLINLKSKIINSIVDYFYCIKAKTPD 126
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 4e-10
Identities = 52/201 (25%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVP-----MSNCINSGINKVYILTQYN 65
AVIL GG GTRL T + KP V IGG P M GI I Y
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG------KPILWHIMKMYSVHGIKDFIICCGYK 58
Query: 66 SASLNRHLARAYNYGSGVTF--GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+ + A + + S VTF + +EV + + W D
Sbjct: 59 GYVIKEYFANYFLHMSDVTFHMAENRMEVH------HKRVEPWNVTLVDTGD---SSMTG 109
Query: 124 PRNKVIEDVLILS-------GDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGL 176
R K + + + GD + +D + H+ G T++ FG
Sbjct: 110 GRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP----PGRFGA 165
Query: 177 MKINNEGRVLSFSEKPKGKDL 197
+ I G+V SF EKPKG
Sbjct: 166 LDIQA-GQVRSFQEKPKGDGA 185
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 4e-07
Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 17/255 (6%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+L G G+R Y KQ P G ++D + + I +G ++ + +++
Sbjct: 8 LFVLAAGMGSR-YGSLKQ-LDGIGPGG--DTIMDYSVYDAIRAGFGRLVFVIRHSFEKEF 63
Query: 71 R-HLARAYNYGSGVTFGDGCVEVL-AATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
R + Y V ++ L P K W GT AV +P +
Sbjct: 64 REKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPW--GTNHAVLMGRDAIREPFAVI 121
Query: 129 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR--ASDFGLMKINNEGRVL 186
D + ++ +Q + + S G+ +++ + +
Sbjct: 122 NADDFYGRNGFEVLARKLMTLEG-KQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLT 180
Query: 187 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246
E+ + G AE+ P SM ++ F + + F +
Sbjct: 181 GVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-FDYSEELFI---N 234
Query: 247 FGSEIIPASANEQFL 261
F + +E F+
Sbjct: 235 FLNAHGQEPKSEFFI 249
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 43.9 bits (102), Expect = 4e-05
Identities = 18/191 (9%), Positives = 48/191 (25%), Gaps = 19/191 (9%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNR 71
VI G +R + + K + G L + +++ + ++ N
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEAHG-QTLFEHSVNSFAAYFASTPFLFIVRNVYDTAV 61
Query: 72 HLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIED 131
+ F + L + + +
Sbjct: 62 FVREKATQLGIKQFYIAELH------------TETRGQAETVTLGLEELAKQGVDY--QG 107
Query: 132 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEK 191
+ + +R +++ + G + F + +V+ +EK
Sbjct: 108 SITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNW----SFAKPEHAGSTKVIQTAEK 163
Query: 192 PKGKDLKAMAV 202
DL + +
Sbjct: 164 NPISDLCSTGL 174
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILT 62
+IL GG+GTRL+P T +K +P+ Y D PM S + +GI ++ I++
Sbjct: 6 IILAGGSGTRLHPATLAISKQLLPV---Y---DKPMIYYPLSTLMLAGIREILIIS 55
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILT 62
+IL GG G+RLYP+TK K +P+ PM I + I+T
Sbjct: 28 IILAGGTGSRLYPITKVTNKHLLPV---G---RYPMIYHAVYKLKQCDITDIMIIT 77
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM 47
++L GG+GTRLYP+T+ +K +PI Y D PM
Sbjct: 7 IVLAGGSGTRLYPITRAVSKQLLPI---Y---DKPM 36
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILT 62
+IL GG+GTRL+P+T+ +K +PI Y D PM S + +GI ++ I+T
Sbjct: 7 IILAGGSGTRLHPITRGVSKQLLPI---Y---DKPMIYYPLSVLMLAGIREILIIT 56
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 34/162 (20%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAV--PIGGAYRLIDVPMSNCINSGINKVYILTQY 64
A ++L G GTR+ P V + G ++ + ++ ++ +
Sbjct: 11 GDTAVLVLAAGPGTRMR-----SDTPKVLHTLAGRS-MLSHVLHAIAKLAPQRLIVVLGH 64
Query: 65 NSASLNRHLA-RAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ-GTADAVRQ-FHWLF 121
+ + + A G + A Q GT AV L
Sbjct: 65 DHQRIAPLVGELADTLGRTIDV---------ALQDR--------PLGTGHAVLCGLSALP 107
Query: 122 EDPRNKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITI 161
+D +V++ SGD L D + D + HR A +T+
Sbjct: 108 DDYA----GNVVVTSGDTPLLDADTLADLIATHRAVSAAVTV 145
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 378 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 100.0 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 100.0 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 100.0 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 100.0 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.97 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.97 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.96 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.96 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.96 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.93 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.92 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.91 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.91 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.9 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.89 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.87 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.85 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.85 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.85 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.84 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.84 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.83 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.83 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.82 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.8 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.8 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.76 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.76 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.76 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.74 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.74 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.74 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.67 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.67 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.67 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.63 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.63 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.55 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.54 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.5 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.49 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.49 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.3 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.25 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.98 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.86 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.85 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.79 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.77 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.74 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.74 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.71 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.7 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.68 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.68 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.67 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.64 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 98.64 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.64 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.62 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.61 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.61 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.61 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.61 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.6 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 98.58 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.57 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.55 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.54 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.52 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.51 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.51 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.5 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.5 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.49 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.48 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.47 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.45 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.45 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.44 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.44 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.44 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.42 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.42 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.42 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.4 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.39 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 98.37 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.37 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.36 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.35 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.34 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.34 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.33 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.33 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.33 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.32 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.32 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.31 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.31 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.3 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.3 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.29 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.29 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.29 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.28 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.28 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.27 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.26 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.25 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.25 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.25 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.24 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.23 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.22 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.19 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.19 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.18 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.16 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.16 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.15 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 98.14 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.13 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.12 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.11 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.11 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.09 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.02 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.0 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 97.99 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 97.99 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 97.96 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 97.95 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 97.94 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 97.92 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 97.9 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 97.88 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 97.86 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 97.83 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 97.81 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.8 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 97.72 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 97.7 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.66 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 97.6 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 97.54 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 97.43 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.4 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.3 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.24 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.14 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 97.14 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.96 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 96.25 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 96.15 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 94.47 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-53 Score=411.37 Aligned_cols=363 Identities=57% Similarity=0.987 Sum_probs=281.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCc-c
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV-T 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~-~ 84 (378)
|++|+|||||||.|+||+|||.++||+|+|++|+||||+|++++|.++|+++|+|++++..+++.+++.+.+ +.+. +
T Consensus 18 ~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~--~~~~~~ 95 (451)
T 1yp2_A 18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--ASNMGG 95 (451)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC--C-----
T ss_pred ccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh--hccccc
Confidence 557999999999999999999999999999999878999999999999999999999998888999987543 1110 0
Q ss_pred c-CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEE
Q 017030 85 F-GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 85 ~-~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+ ....++++...+.. .+.+++.||+++|+.++.++... ..++|++++||++++.++.+++++|+++++++|+++
T Consensus 96 ~~~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~ 170 (451)
T 1yp2_A 96 YKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEEH---TVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 170 (451)
T ss_dssp ---CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTTS---CCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEE
T ss_pred ccccCcEEEecccccc--cccccccCcHHHHHHHHHHHHhc---CCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEE
Confidence 1 11124455433321 12234579999999999988531 148999999999998899999999999999999998
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.+...+..||++..|++++|.+|.|||.......+.++.++++..+......++++++|+|+|++++|.+++++..+.
T Consensus 171 ~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 250 (451)
T 1yp2_A 171 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG 250 (451)
T ss_dssp EEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred EEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc
Confidence 88753336789999999889999999999865433444444444332221112357899999999999987777765444
Q ss_pred CCchhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCCCCceeeCceeee
Q 017030 244 ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKIDDSKIVD 321 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~ 321 (378)
..++.+++++.++++ .+++++.++++|.|++|+++|.+|+++++++. +...++++++.+++++.+++++.|.++.|.+
T Consensus 251 ~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~ 330 (451)
T 1yp2_A 251 ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330 (451)
T ss_dssp CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEE
T ss_pred ccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEeC
Confidence 456667889888876 78999999999999999999999999999876 6677888899999999999999887788888
Q ss_pred eEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCC-------------------CeEeeeeeeeeeeEe
Q 017030 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPL-------------------CRRIWKCSSLCSVIC 375 (378)
Q Consensus 322 s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~-------------------~~~~~~~~~~~~~~~ 375 (378)
++||+||.|+++.|.+|+||++|+||+||.|.++++..+ ++|+++|.+..++|.
T Consensus 331 ~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig 403 (451)
T 1yp2_A 331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIID 403 (451)
T ss_dssp EEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEEC
T ss_pred eEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeC
Confidence 888888888877788888888888888888888888777 788888777766664
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=394.10 Aligned_cols=350 Identities=36% Similarity=0.574 Sum_probs=268.4
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|+|||||||.|+||+|+|..+||+|+|++|+||||+|++++|.++|+++|+|++++..+++.+++.+.|.+.. .+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~--~~ 87 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFR--PE 87 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCC--GG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhcccc--cc
Confidence 3468999999999999999999999999999998679999999999999999999999988889998875432110 00
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
....+.+++..+.. ....|+.||+++++.+++++... ..++|++++||+++..++.++++.|.++++++|+++.+
T Consensus 88 ~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~ 162 (420)
T 3brk_X 88 RNESFDILPASQRV--SETQWYEGTADAVYQNIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLE 162 (420)
T ss_dssp GTCEEEEECCC---------CCCCHHHHHHTTHHHHHHH---CCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEE
T ss_pred ccCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHhc---CCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEee
Confidence 01124455433220 00123469999999999888520 03789999999999889999999999999999999987
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC--
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-- 243 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-- 243 (378)
.+...+..||++..|++++|..|.|||...... + ....++++++|+|+|++++|.+++++..+.
T Consensus 163 ~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--~------------~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 228 (420)
T 3brk_X 163 VPRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--P------------GNEGFALASMGIYVFHTKFLMEAVRRDAADPT 228 (420)
T ss_dssp EETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--T------------TBTTEEEEEEEEEEEEHHHHHHHHTSSCCC--
T ss_pred cCccccCcccEEEECCCCcEEEeEeCCCccccc--c------------ccccceEEeeeeEEEeHHHHHHHHHHhcccCC
Confidence 643336789999998889999999998643210 0 001246899999999999887676553221
Q ss_pred -CCchhcccccccccccceEEEEe-----------cceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCC
Q 017030 244 -ANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 311 (378)
Q Consensus 244 -~~~~~~~~l~~l~~~~~i~~~~~-----------~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~ 311 (378)
..++..++++.+++++++++|.+ +++|.||+|++||.+|+++++++.+...++.+.+.+++.+.+.++
T Consensus 229 ~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~ 308 (420)
T 3brk_X 229 SSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPP 308 (420)
T ss_dssp --------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCC
T ss_pred ccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCC
Confidence 22455688888888789999999 899999999999999999999887666667777778888888888
Q ss_pred ceee------CceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 312 SKID------DSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 312 ~~i~------~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
+.|. ++.++++.||+||.|.++.|.+|+||++|+||+||.|.+|+|++++.|+.+|.+.+++|+.
T Consensus 309 ~~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~ 379 (420)
T 3brk_X 309 AKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDH 379 (420)
T ss_dssp CEEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECT
T ss_pred cEEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECC
Confidence 8883 5677788888888887677888888888888888888888888888888888887776653
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=327.94 Aligned_cols=236 Identities=19% Similarity=0.226 Sum_probs=179.9
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
.++.+||||||.||||+|+| ||||+||+|| |||+|+|++|.++|+++|+|+++|..+++++|+.+.. ..|+
T Consensus 11 ~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~~ 81 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELA-----DTLG 81 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHH-----HHHT
T ss_pred CCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHH-----HhcC
Confidence 45789999999999999976 9999999999 9999999999999999999999999999999997532 1222
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.. +.++ .|.+ ++|||+|++++++++.+. ..+++++++||. ++..+ +.+++++|++.++++|+++.
T Consensus 82 ~~-i~~~--~q~~-------~lGTa~Av~~a~~~l~~~---~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~ 148 (501)
T 3st8_A 82 RT-IDVA--LQDR-------PLGTGHAVLCGLSALPDD---YAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTT 148 (501)
T ss_dssp SC-CEEE--ECSS-------CCCHHHHHHHHHTTSCTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred Cc-EEEE--EcCC-------CCCcHHHHHHHHHHhccc---cccceeeecCcceeecHHHHHHHHHHHhhccccceEeee
Confidence 22 2222 2332 479999999999998642 147899999998 55544 89999999999999999999
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
+.++ +..||.+..|++|+|.++.||++..... ...+++++|+|+|+++.|.++++.....
T Consensus 149 ~~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~~-----------------~~i~~in~Giy~f~~~~l~~~l~~l~~~- 208 (501)
T 3st8_A 149 TLDD--PFGYGRILRTQDHEVMAIVEQTDATPSQ-----------------REIREVNAGVYAFDIAALRSALSRLSSN- 208 (501)
T ss_dssp ECSC--CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HHCCEEEEEEEEEEHHHHHHHHTTCCCC-
T ss_pred ccCC--chhccccccccceeEEeeccccCCChhh-----------------ccceeeeceeeeecchhHHHhhhhhccc-
Confidence 9887 7899999999999999999998764321 1246899999999999998887764332
Q ss_pred Cchhccccccc----cc-ccceEEEEecceEE--ecCCHHHHHHHHH
Q 017030 245 NDFGSEIIPAS----AN-EQFLKAYLFNDYWE--DIGTIRSFFEANL 284 (378)
Q Consensus 245 ~~~~~~~l~~l----~~-~~~i~~~~~~~~~~--~i~t~~~~~~a~~ 284 (378)
+...+.++.+. .. +..+..+..+.+|. .+++..++.++..
T Consensus 209 n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~ 255 (501)
T 3st8_A 209 NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELAS 255 (501)
T ss_dssp STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHH
T ss_pred ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHH
Confidence 22223333333 33 45677777776654 4555665555544
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=323.09 Aligned_cols=318 Identities=19% Similarity=0.229 Sum_probs=243.3
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
.-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+ +
T Consensus 11 ~~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~------~----- 75 (468)
T 1hm9_A 11 SNFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG------Q----- 75 (468)
T ss_dssp CEEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS------S-----
T ss_pred CCcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC------C-----
Confidence 35899999999999984 689999999999 99999999999999999999999887777666532 1
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.++.... ..|++++++.++++++.. .++|++++||. +...++.++++.|.+.++++++++.+
T Consensus 76 --i~~v~~~~---------~~G~~~sl~~a~~~~~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~ 140 (468)
T 1hm9_A 76 --TEFVTQSE---------QLGTGHAVMMTEPILEGL----SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAE 140 (468)
T ss_dssp --SEEEECSS---------CCCHHHHHHTTHHHHTTC----CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred --cEEEeCCc---------cCChHHHHHHHHHHhccC----CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 22222111 369999999999988521 37999999999 45566999999999988999998888
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC--
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-- 243 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-- 243 (378)
..+ +..||.+..|++++|..+.|||...... ..++++++|+|+|+++.|.+.+++..+.
T Consensus 141 ~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~ 201 (468)
T 1hm9_A 141 TDN--PFGYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNA 201 (468)
T ss_dssp CSC--CTTSCEEEECTTCCEEEEECTTTCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCSCST
T ss_pred cCC--CCceeEEEECCCCCEEEEEECCCCChHH-----------------hcCeEEEEEEEEEEHHHHHHHHHhhccccC
Confidence 765 5679999998889999999987532100 0236889999999999776666553222
Q ss_pred -CCchhcccccccccc-cceEEEEecceEEe--cCCHHHHHHHHHhcccCC-------------CCcc------------
Q 017030 244 -ANDFGSEIIPASANE-QFLKAYLFNDYWED--IGTIRSFFEANLALTAHP-------------PMFS------------ 294 (378)
Q Consensus 244 -~~~~~~~~l~~l~~~-~~i~~~~~~~~~~~--i~t~~~~~~a~~~~l~~~-------------~~~~------------ 294 (378)
...+..++++.+++. .++++|.++++|.+ ++|++||..|+..+..+. +...
T Consensus 202 ~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 281 (468)
T 1hm9_A 202 QGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEV 281 (468)
T ss_dssp TCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTC
T ss_pred CCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCC
Confidence 122335677777775 58999999999977 559999999987654221 1111
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
.+.+.+.+.+++.|++++.| .++.|.+|.||+||.|+++.|.+|+||++|+||+++.|. +++|+++++|+++|.+..+
T Consensus 282 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 361 (468)
T 1hm9_A 282 QIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGS 361 (468)
T ss_dssp EECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESC
T ss_pred EECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeee
Confidence 22334444556666666666 577888889999999988888999999999999999998 8999999999998888655
Q ss_pred eE
Q 017030 373 VI 374 (378)
Q Consensus 373 ~~ 374 (378)
+|
T Consensus 362 ~I 363 (468)
T 1hm9_A 362 SI 363 (468)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=310.58 Aligned_cols=301 Identities=19% Similarity=0.246 Sum_probs=214.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++. +.+++.+.. . +
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~---~----~-- 67 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL---K----E-- 67 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC---T----T--
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC---C----c--
Confidence 6899999999999999999999999999999 9999999999999999999999876 666665431 0 1
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe--cCHHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~--~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++.... ++.|++++++.+.+ .++|++++||+++. .++.++++ .+++++++.+.
T Consensus 68 -i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~ 124 (401)
T 2ggo_A 68 -ISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKV 124 (401)
T ss_dssp -CEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEEC
T ss_pred -EEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEc
Confidence 22332211 12588888876532 37899999999876 44666665 46788888887
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-CC
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AN 245 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~ 245 (378)
.+ +..|+.+..+++|++..+.|||..+. ++++++|+|+|++++|+. ++...+. ..
T Consensus 125 ~~--~~~~~~v~~~~~g~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~ 180 (401)
T 2ggo_A 125 SN--PKDYGVLVLDNQNNLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFTY-LDKISISERG 180 (401)
T ss_dssp SC--CSSSCEEEECTTSSEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHHH-HHHSCCCSSS
T ss_pred CC--CcceeEEEECCCCeEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHHH-hhhcCcCCCC
Confidence 65 56789888888899999999886432 367899999999999854 4543221 11
Q ss_pred c-hhccccccccc-ccceEEEEecceEEecCCHHHHHHHHHhcccCCCC---ccccCCCCcEEccC--------------
Q 017030 246 D-FGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM---FSFYDATKPIYTSR-------------- 306 (378)
Q Consensus 246 ~-~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~---~~~~~~~~~i~~~~-------------- 306 (378)
. ...++++.+ . +.++..+..+++|.||+||+||.+|++.++++... ...+++.+.+.+.+
T Consensus 181 ~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i 259 (401)
T 2ggo_A 181 ELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYI 259 (401)
T ss_dssp CBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEE
T ss_pred ceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEE
Confidence 1 123566666 4 35899999999999999999999999988765320 01222222222222
Q ss_pred ----CCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 307 ----RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 307 ----~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
.|++++.| .++.|. ++.||+||.|+ ++.|.+|+|+++++|+.++.|.+++|++++.|+.+|.+.
T Consensus 260 ~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~ 330 (401)
T 2ggo_A 260 EGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIA 330 (401)
T ss_dssp ESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEEC
T ss_pred eCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEc
Confidence 23333333 334443 56677777777 677777777777777777777777777777777777764
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=309.95 Aligned_cols=316 Identities=16% Similarity=0.190 Sum_probs=228.3
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++|.|||||||.|+||+| ++||+|+|++|+ |||+|+++.|.++|+++|+|++++..+++.+++.+. +
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~---------~ 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP---------S 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC---------C
Confidence 579999999999999996 689999999999 999999999999999999999998888887776431 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++.... ..|++++++.++++++. .++|++++||. +...++.++++.|.+ .+++++..
T Consensus 74 ---~~~v~~~~---------~~g~~~~i~~~~~~~~~-----~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 134 (459)
T 4fce_A 74 ---LNWVLQAE---------QLGTGHAMQQAAPHFAD-----DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTV 134 (459)
T ss_dssp ----CEEECSS---------CCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEeCCC---------CCCcHHHHHHHHHhcCC-----CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEE
Confidence 22222111 36999999999988863 48999999999 445558999988754 56777777
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~- 243 (378)
+..+ +..||.+..+ ++++..+.|||...... ..++++++|+|+|+++.|.++++.....
T Consensus 135 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T 4fce_A 135 KLDN--PSGYGRIVRE-NGDVVGIVEHKDASDAQ-----------------REINEINTGILVANGRDLKRWLSLLDNNN 194 (459)
T ss_dssp ECSC--CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCS
T ss_pred ecCC--CCcccEEEeC-CCcEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 7665 5679998887 79999999987532210 1246789999999999887777654221
Q ss_pred --CCchhcccccccccc-cceEEEEecceE--EecCCHHHHHHHHHhcccCC-------------CCc------------
Q 017030 244 --ANDFGSEIIPASANE-QFLKAYLFNDYW--EDIGTIRSFFEANLALTAHP-------------PMF------------ 293 (378)
Q Consensus 244 --~~~~~~~~l~~l~~~-~~i~~~~~~~~~--~~i~t~~~~~~a~~~~l~~~-------------~~~------------ 293 (378)
...+..+.++.+... .++.++..+++| .+|+||+||..|+..+..+. |..
T Consensus 195 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~ 274 (459)
T 4fce_A 195 AQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRD 274 (459)
T ss_dssp TTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSS
T ss_pred cCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCC
Confidence 122334566666554 589999998766 67999999999987654331 110
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
..+.+.+.+..++.|++++.| .++.|.++.||+||.|+ ++.|.+++||++|.||+++.|. +++|+++++|+++|.+.
T Consensus 275 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~ 354 (459)
T 4fce_A 275 ITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIK 354 (459)
T ss_dssp CEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred cEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEe
Confidence 112233333344445555555 46666777777777777 7777777777777777777776 67777777777777766
Q ss_pred eeeE
Q 017030 371 CSVI 374 (378)
Q Consensus 371 ~~~~ 374 (378)
.+++
T Consensus 355 ~~~i 358 (459)
T 4fce_A 355 KARL 358 (459)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 5554
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=306.11 Aligned_cols=311 Identities=17% Similarity=0.198 Sum_probs=210.6
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.|||||||.|+||++ .+||+|+|++|+ |||+|+++.|.++|+++|+|++++..+++.+++.+. +
T Consensus 4 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~---- 70 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE-----Q---- 70 (456)
T ss_dssp CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC-----C----
T ss_pred CcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC-----C----
Confidence 568999999999999984 689999999999 999999999999999999999998877777776421 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~ 164 (378)
++++.... ..|++++++.+++++.. .+++++++||. +...++.++++.|.+ ++++++..
T Consensus 71 ---~~~v~~~~---------~~g~~~~~~~~~~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 131 (456)
T 2v0h_A 71 ---VNWVLQTE---------QLGTAHAVQQAAPFFKD-----NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTV 131 (456)
T ss_dssp ---CEEEECSC---------CCCHHHHHHHHGGGCCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEeCCC---------CCCcHHHHHHHHHhcCC-----CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEe
Confidence 22222111 36999999999888753 48999999999 445568999988765 57788877
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~- 243 (378)
+..+ +..|+.+..+ ++++..+.||+...... ...+++++|+|+|+++.|.+.++...+.
T Consensus 132 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 191 (456)
T 2v0h_A 132 NLDN--PTGYGRIIRE-NGNVVAIVEQKDANAEQ-----------------LNIKEVNTGVMVSDGASFKKWLARVGNNN 191 (456)
T ss_dssp ECSS--CTTSCEEEEE-TTEEEEEECTTTCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCS
T ss_pred ecCC--CCccceEEEc-CCcEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhcccc
Confidence 7665 5678988887 78999999987642110 0236789999999999776676543221
Q ss_pred --CCchhcccccccccc-cceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccccCC-CCcEEccCCCCCC
Q 017030 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA-TKPIYTSRRNLPP 311 (378)
Q Consensus 244 --~~~~~~~~l~~l~~~-~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~~~~-~~~i~~~~~i~~~ 311 (378)
...+..++++.+... .++..+..+++ |.+|+||+||.+|++.+..+. ....++++ ...+.+.+.++++
T Consensus 192 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~ 271 (456)
T 2v0h_A 192 AQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKD 271 (456)
T ss_dssp TTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSS
T ss_pred ccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCC
Confidence 112235666666654 57999998765 569999999999998665331 11112222 2233444444444
Q ss_pred cee-eCcee-eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 312 SKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 312 ~~i-~~~~i-~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+.| .++.| .++.||+||.|+ ++.|.+|+||++|+|++++.|.+++|++++.|+.+|.+
T Consensus 272 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i 332 (456)
T 2v0h_A 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRL 332 (456)
T ss_dssp CEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEE
T ss_pred CEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEE
Confidence 444 23333 244555555555 45555555555555555555555555555555444444
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=286.72 Aligned_cols=243 Identities=20% Similarity=0.285 Sum_probs=193.5
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcc---
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT--- 84 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~--- 84 (378)
.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+.+.....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 58999999999999999999999999999999 99999999999999999999999999999998864321111000
Q ss_pred ------------cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-----HHH
Q 017030 85 ------------FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-----YMD 147 (378)
Q Consensus 85 ------------~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-----~~~ 147 (378)
++.. +.++ .+. .+.||+++++.++.+++ +++|+|++||.+++.+ +.+
T Consensus 81 ~~~~~~~~~~~~~~~~-i~~~--~~~-------~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~ 144 (281)
T 3juk_A 81 KENALKSIRNIIEKCC-FSYV--RQK-------QMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQ 144 (281)
T ss_dssp HHHHHHHHHHHHHHCE-EEEE--ECS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHH
T ss_pred chhhhhhhhccccCcc-EEEE--ecC-------CCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHH
Confidence 1111 2222 222 13699999999999986 3799999999999998 999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcceEEEECC--CC--CEEEEEecCCccchhcccccchhccccccccccCcceeee
Q 017030 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (378)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~--~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (378)
+++.|.++++ .++++.+.+...+..||++..++ +| +|..+.|||..... .++++++
T Consensus 145 l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~ 204 (281)
T 3juk_A 145 MTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVI 204 (281)
T ss_dssp HHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEE
Confidence 9999988877 67777777554578899999876 78 99999999974321 2467899
Q ss_pred eEEEEeHHHHHHHHhhhCCC---CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccC
Q 017030 224 GVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (378)
Q Consensus 224 Giy~~~~~~l~~~l~~~~~~---~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~ 289 (378)
|+|+|++++|+ .++...+. ..+ ..++++.++.++++.+|.++++|.|||||++|.+|++.+++.
T Consensus 205 GiYi~~~~~l~-~l~~~~~~~~~e~~-l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 205 GRYILTPDIFE-ILSETKPGKNNEIQ-ITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp EEEEECTTHHH-HHHTCCCCGGGSCC-HHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHH-HHHhcCCCCCCcee-HHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99999999985 55543221 112 257788888888999999999999999999999999998764
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=268.14 Aligned_cols=236 Identities=22% Similarity=0.385 Sum_probs=191.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecC-hhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~-~~~i~~~l~~~~~~~~~~~~ 85 (378)
+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++. .+++.+++.. +..|
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~------~~~~ 95 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS------GQEF 95 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGG
T ss_pred cCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh------cccc
Confidence 468999999999999999999999999999999 9999999999999999999999865 3667777643 2344
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+... .+.. +.. ..|++++++.+.++++ .++|++++||+++..++.++++.|.++++++++++.+
T Consensus 96 ~~~i-~~~~--~~~-------~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~ 159 (269)
T 4ecm_A 96 GVSF-TYRV--QDK-------AGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQS 159 (269)
T ss_dssp TCEE-EEEE--CSS-------CCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEE
T ss_pred CceE-EEee--CCc-------cCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEE
Confidence 4332 2221 211 3699999999998886 3899999999999988999999999989999999988
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (378)
.++ +..||++..+ +|+|..+.|||.... ++++++|+|+|++++|+ .+++..+. .
T Consensus 160 ~~~--~~~~g~v~~d-~g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~ 214 (269)
T 4ecm_A 160 VDD--PERFGVANIQ-NRKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSAR 214 (269)
T ss_dssp CSC--GGGSEEEEEE-TTEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTT
T ss_pred CCC--CCCceEEEEc-CCEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCC
Confidence 775 5789999987 489999999985432 36789999999999884 44443221 1
Q ss_pred Cch-hcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 245 NDF-GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 245 ~~~-~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
.++ ..++++.++.++++.++.++++|.||+||+||.+|++.+++..
T Consensus 215 ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 215 GELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp SCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred CeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 122 3567788888889999999999999999999999999988654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=265.30 Aligned_cols=245 Identities=21% Similarity=0.316 Sum_probs=187.1
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~----- 80 (378)
++.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+.
T Consensus 6 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 84 (302)
T 2e3d_A 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_dssp CSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC-
T ss_pred hcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhh
Confidence 3468999999999999999999999999999999 9999999999999999999999998888998885421000
Q ss_pred CC-c----------ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec------
Q 017030 81 SG-V----------TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM------ 143 (378)
Q Consensus 81 ~~-~----------~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~------ 143 (378)
.+ . .++.. +.++. +. .+.||+++++.++.++. .++|++++||++++.
T Consensus 85 ~~~~~~l~~~~~~~~~~~~-i~~~~--~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~ 148 (302)
T 2e3d_A 85 RVKRQLLDEVQSICPPHVT-IMQVR--QG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLS 148 (302)
T ss_dssp ---CHHHHHHHHTSCTTCE-EEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTT
T ss_pred ccchhhhhhhhhccccCcc-eEEee--CC-------ccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccch
Confidence 00 0 01111 22222 11 13699999999999885 379999999998872
Q ss_pred --CHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEEC----CCC---CEEEEEecCCccchhcccccchhcccccccc
Q 017030 144 --DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (378)
Q Consensus 144 --d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~---~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (378)
++.++++.|.+.++ +|+++.+.++ +..||++..+ ++| +|..|.|||.....
T Consensus 149 ~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~----------------- 208 (302)
T 2e3d_A 149 QDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA----------------- 208 (302)
T ss_dssp TSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-----------------
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc-----------------
Confidence 69999999988777 7888777643 6779999863 456 89999999864221
Q ss_pred ccCcceeeeeEEEEeHHHHHHHHhhhCCC--CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 215 ~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
.++++++|+|+|++++|+ .+++..+. ..-+..++++.+++++++.++.++++|.|||||++|.+|++.++...
T Consensus 209 --~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~ 283 (302)
T 2e3d_A 209 --PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRH 283 (302)
T ss_dssp --SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHHC
T ss_pred --ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhcC
Confidence 236789999999999884 44443221 11122466777777679999999999999999999999997765443
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=258.37 Aligned_cols=246 Identities=25% Similarity=0.327 Sum_probs=178.8
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc--
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF-- 85 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~-- 85 (378)
+|+|||||||.|+||+|+|.++||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++.+....+.+..+
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 48999999999999999999999999999999 999999999999999999999999888899888653100001110
Q ss_pred CCceEEEeccccCCC---cCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEE
Q 017030 86 GDGCVEVLAATQTPG---EAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITIS 162 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~---~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~ 162 (378)
+...+.++....+.. ...+....||+++++.++.++.. .++|++++||.+++.++.++++.|.++++++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCC-----CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 000112221100000 00011236999999999888842 4789999999999888999999998888888775
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
..+ . +..||.+..| +|+|..|.|||... .+++++|+|+|++++|+ .++.
T Consensus 156 ~~~--~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~--- 204 (259)
T 1tzf_A 156 ATF--P--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN--- 204 (259)
T ss_dssp EEC--C--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---
T ss_pred Eec--C--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---
Confidence 433 2 5679999887 79999999998642 24789999999999884 3322
Q ss_pred CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
...++..+.++.+++++++.++.++++|.||+|++||.++++.+++..
T Consensus 205 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence 122344667888777779999999999999999999999999987643
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=264.54 Aligned_cols=248 Identities=21% Similarity=0.273 Sum_probs=171.9
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccC-----C
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY-----G 80 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~-----~ 80 (378)
...|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++...+.+ .
T Consensus 12 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 90 (297)
T 2ux8_A 12 KPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAA 90 (297)
T ss_dssp CCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHT
T ss_pred cCccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhh
Confidence 3558999999999999999999999999999999 999999999999999999999998888898887532100 0
Q ss_pred CC---------cccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe---cCHHHH
Q 017030 81 SG---------VTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR---MDYMDF 148 (378)
Q Consensus 81 ~~---------~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~---~d~~~~ 148 (378)
.+ ..++.. +.++. +. .+.||+++++.++.+++ .++|++++||++++ .++.++
T Consensus 91 ~~~~~~~~~~~~~~g~~-i~~~~--~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l 154 (297)
T 2ux8_A 91 RGKSLDVLDGTRLKPGN-IAYVR--QQ-------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQM 154 (297)
T ss_dssp TTCCGGGGTTSCCSTTS-EEEEE--CC-------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHH
T ss_pred ccchhhhhhhcccCCCc-eEEEe--CC-------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHH
Confidence 00 001111 33322 11 13699999999998885 38999999999887 459999
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcceEEEECC--CC--CEEEEEecCCccchhcccccchhccccccccccCcceeeee
Q 017030 149 VQNHRQSGADITISCLPMDDSRASDFGLMKINN--EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 224 (378)
Q Consensus 149 l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~--~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 224 (378)
++.|.+.++ .++++.+.+...+..||++..++ ++ +|..|.|||..... .++++++|
T Consensus 155 ~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~G 214 (297)
T 2ux8_A 155 VDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIG 214 (297)
T ss_dssp HHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEE
T ss_pred HHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEE
Confidence 999988776 67777665433356799887653 45 89999999864211 23578999
Q ss_pred EEEEeHHHHHHHHhhhCCC-CCc-hhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCC
Q 017030 225 VYLFKKEILLNLLRWRFPT-AND-FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP 291 (378)
Q Consensus 225 iy~~~~~~l~~~l~~~~~~-~~~-~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~ 291 (378)
+|+|++++|+ .+++..+. ... ...++++.+++++++.++.++++|.|||||+||.+|++.++...+
T Consensus 215 iyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~ 282 (297)
T 2ux8_A 215 RYILQPEVMR-ILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRP 282 (297)
T ss_dssp EEEECTHHHH-HHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCT
T ss_pred EEEECHHHHH-HHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcCh
Confidence 9999999874 44543322 111 135778888887899999999999999999999999988775543
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=259.46 Aligned_cols=249 Identities=21% Similarity=0.286 Sum_probs=185.3
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----C
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----S 81 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~-----~ 81 (378)
+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++...+.+. .
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 458999999999999999999999999999999 9999999999999999999999998888888764311000 0
Q ss_pred C----------cccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe--cCHHHHH
Q 017030 82 G----------VTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFV 149 (378)
Q Consensus 82 ~----------~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~--~d~~~~l 149 (378)
+ ..++.. +.++. +.. ..||+++++.++.++.+ ..+.|++++||++++ .++.+++
T Consensus 90 ~~~~~~~~~~~~~~g~~-i~~~~--~~~-------~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~ 155 (323)
T 2pa4_A 90 GKTDQVEIIRRAADLIK-AVPVT--QDK-------PLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMA 155 (323)
T ss_dssp TCHHHHHHTTHHHHHCE-EEEEE--CSS-------CCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHH
T ss_pred chhhhhhhhhccccCcc-eEEEe--CCc-------cCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHH
Confidence 0 001111 22222 211 36999999999888752 013399999999887 4589999
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcceEEEEC----CCC--CEEEEEecCCccchhcccccchhccccccccccCcceeee
Q 017030 150 QNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (378)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (378)
+.|.+.++ .++++.+.+...+..||++..+ +++ +|..|.|||..... .++++++
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~ 215 (323)
T 2pa4_A 156 QVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAAT 215 (323)
T ss_dssp HHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEE
Confidence 99987765 5777777654346789999876 454 99999999864221 2367899
Q ss_pred eEEEEeHHHHHHHHhhhCCCC-Cch-hcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCCC
Q 017030 224 GVYLFKKEILLNLLRWRFPTA-NDF-GSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP 291 (378)
Q Consensus 224 Giy~~~~~~l~~~l~~~~~~~-~~~-~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~ 291 (378)
|+|+|++++|. .+++..+.. ..+ ..++++.++++ .++.++.++++|.|||||+||.+|++.++...+
T Consensus 216 GiY~~~~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~ 285 (323)
T 2pa4_A 216 GRYLLDRKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHP 285 (323)
T ss_dssp EEEEEETHHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCT
T ss_pred EEEEECHHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcCh
Confidence 99999999885 445432221 111 25677777765 789999999999999999999999988875543
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=253.38 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=168.0
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCce
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (378)
+||||||.||||+|+|.++||+|+||+|+ |||+|+++.+.+ +|+++|+|++++..+ +.+++.+.. ..++...
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~-----~~~~~~~ 74 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKA-----TQLGIKQ 74 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHH-----HHHTCSS
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHH-----HHcCCCC
Confidence 79999999999999999999999999999 999999999999 799999999998766 555655432 1121111
Q ss_pred --EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEE-ecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 90 --VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 90 --i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~-~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++ +. .+.||++|++.+++++.+.....+++|+|++||+++ +.++.++ .+++++++++.+.
T Consensus 75 ~~~~~~---~~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~ 139 (255)
T 4evw_A 75 FYIAEL---HT-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQG 139 (255)
T ss_dssp EEEEEE---SS-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEEC
T ss_pred ceEEEe---CC-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEec
Confidence 2222 21 136999999999999820000014789999999988 4455442 3567789999888
Q ss_pred CCCCCCcceEEEECCCC--CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHH-HHHHHHhh----
Q 017030 167 DDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRW---- 239 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~-~l~~~l~~---- 239 (378)
++ + .||++..|++| +|+++.||+.. ++++++|+|+|++. .|.+.+.+
T Consensus 140 ~~--p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~ 193 (255)
T 4evw_A 140 GG--D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVAR 193 (255)
T ss_dssp CS--S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred CC--C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhc
Confidence 65 3 89999999888 99999999542 35789999999985 34333322
Q ss_pred hCC---CCCchhcccccccccc-cceEEEEec-ceEEecCCHHHHHHHHHhc
Q 017030 240 RFP---TANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 240 ~~~---~~~~~~~~~l~~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a~~~~ 286 (378)
..+ ....+..++++.++++ .++.++.++ ++|.|+|||++|.++...-
T Consensus 194 ~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 194 PSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp CGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred ccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 111 1222345677777765 469999885 9999999999999997643
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=252.42 Aligned_cols=233 Identities=23% Similarity=0.396 Sum_probs=183.0
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEe-ecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~-~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+|+|||||||.||||+|+|...||+|+||+|+ |||+|+++.+..+|+++|+|++ +++.+.+.+++.+ +.+|+
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~------g~~~g 74 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD------GSNWG 74 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc------ccccC
Confidence 58999999999999999999999999999999 9999999999999999999887 4566778777643 33454
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEE-ecCHHHHHHHHHHcCCcEEEEEee
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~-~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
.. +.+. .+.. +.|++++++.+.+++. .++++++.||.++ ..++.++++.|.+++.+++++..+
T Consensus 75 ~~-i~~~--~~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 138 (293)
T 1fxo_A 75 LD-LQYA--VQPS-------PDGLAQAFLIGESFIG------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYH 138 (293)
T ss_dssp CE-EEEE--ECSS-------CCCGGGHHHHTHHHHT------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEe--eCCC-------CCCHHHHHHHHHHHhC------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEE
Confidence 33 2222 1221 3699999999998886 3789999999854 567999999998777788888877
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (378)
+.+ +..||++..|++|+|.++.|||..+. ++++++|+|+|++++++.+ +...+. .
T Consensus 139 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~~ 194 (293)
T 1fxo_A 139 VLD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDIA-RDLKPSPR 194 (293)
T ss_dssp CSC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHHH-HHCCCCTT
T ss_pred CCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHHH-HhcCcccC
Confidence 765 56899999998999999999985332 3578999999999998544 433222 1
Q ss_pred Cch-hcccccccccccceEEEEec-ce-EEecCCHHHHHHHHHhcc
Q 017030 245 NDF-GSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (378)
Q Consensus 245 ~~~-~~~~l~~l~~~~~i~~~~~~-~~-~~~i~t~~~~~~a~~~~l 287 (378)
..+ ..++++.+++.+++.++... +| |.|+|||+||.+|+..+.
T Consensus 195 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 195 GELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 112 24666767777788887775 75 999999999999998764
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=250.39 Aligned_cols=233 Identities=24% Similarity=0.394 Sum_probs=182.3
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEee-cChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~-~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
.|+|||||||.||||+|+|...||+|+||+|+ |||+|+++.+..+|+++|+|+++ ++.+.+.+++.+ +.+|+
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~------g~~~g 75 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD------GSQFG 75 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh------ccccC
Confidence 48999999999999999999999999999999 99999999999999999999885 666778777643 33454
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-EecCHHHHHHHHHHcCCcEEEEEee
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
.. +.++. +.. +.|++++++.+.+++. .++++++.||.+ .+.++.++++.|.+.+.+++++..+
T Consensus 76 ~~-i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (295)
T 1lvw_A 76 VR-FSYRV--QEE-------PRGIADAFIVGKDFIG------DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp SE-EEEEE--CSS-------CCCGGGHHHHTHHHHT------TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEee--CCC-------CCChHHHHHHHHHHhC------CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEE
Confidence 33 22221 221 3599999999999886 378888889984 4667999999998777788888887
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (378)
+.+ +..||++..|++|+|.++.|||..+. ++++++|+|+|++++++.+ ....+. .
T Consensus 140 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~~-~~~~~~~~ 195 (295)
T 1lvw_A 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEIA-RRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHHH-HHCCCCTT
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHHH-HhcCCccc
Confidence 766 56799999998999999999985432 3578999999999998543 433222 1
Q ss_pred Cch-hcccccccccccceEEEEec-ce-EEecCCHHHHHHHHHhcc
Q 017030 245 NDF-GSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (378)
Q Consensus 245 ~~~-~~~~l~~l~~~~~i~~~~~~-~~-~~~i~t~~~~~~a~~~~l 287 (378)
..+ ..++++.+++.+++.++... ++ |.|++||+||.+|+..+.
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 111 24566666767777777775 75 999999999999998764
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=260.87 Aligned_cols=258 Identities=12% Similarity=0.131 Sum_probs=185.4
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceee--cCeeeeeeeehhhhhhcCCcEEEEEeecCh-hhHHHHHHhhccCCCC
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPI--GGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSG 82 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi--~g~~pli~~~l~~l~~~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~ 82 (378)
|++|+|||||||.|+||+| ||+|+|+ +|+ |||+|+++++.++|+++|+|++++.. +.+.+++.+.+.
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~---- 72 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYE---- 72 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHT----
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhc----
Confidence 5678999999999999997 7999999 599 99999999999999999999999884 789998875432
Q ss_pred cccCCceEEEecccc-C-----CCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHH-
Q 017030 83 VTFGDGCVEVLAATQ-T-----PGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ- 154 (378)
Q Consensus 83 ~~~~~~~i~i~~~~~-~-----~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~- 154 (378)
|+.. +.++.... . .....+..++||+++++.++++++ ++|+|++||.+++.+ +.+++++|.+
T Consensus 73 --~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~-------~~~lV~~gD~l~~~~~~~~l~~~~~~~ 142 (303)
T 3pnn_A 73 --GRIP-VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR-------EPFAVINADDFYGRNGFEVLARKLMTL 142 (303)
T ss_dssp --TTSC-EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC-------SCEEEEESSCBCCHHHHHHHHHHHHTT
T ss_pred --cCCc-EEEEecccccccccccccccccccCCcHHHHHHHHHhcC-------CCEEEEECCeecCHHHHHHHHHHHHHh
Confidence 2111 22221110 0 000001235799999999988773 799999999999887 8999999986
Q ss_pred --cCCcEEEEEeecCCCCCCcc-----eEEEECCCCCEEEEEecCCccchhc-ccccchhcccccccc-ccCcceeeeeE
Q 017030 155 --SGADITISCLPMDDSRASDF-----GLMKINNEGRVLSFSEKPKGKDLKA-MAVDTTVLGLSKQEA-EEKPYIASMGV 225 (378)
Q Consensus 155 --~~~~~ti~~~~~~~~~~~~~-----g~v~~d~~~~v~~~~ek~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Gi 225 (378)
+++++|+++.+.+++ .+.| |.+..|++|+|+++.|||....... .... .....+. ...++++++|+
T Consensus 143 ~~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~----~~~g~~~~~~~~~~i~~Gi 217 (303)
T 3pnn_A 143 EGKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFR----DETGKICTLAEDAPVSMNM 217 (303)
T ss_dssp TTCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEE----CTTSCEEEECTTCEEEEEE
T ss_pred ccccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccc----ccccccccCCCCCEEEEEE
Confidence 578899999887652 1445 6888988899999999986431000 0000 0000000 01246899999
Q ss_pred EEEeHHHHHHHHh-------hhCCC--CCchhccccccccccc--ceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 226 YLFKKEILLNLLR-------WRFPT--ANDFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 226 y~~~~~~l~~~l~-------~~~~~--~~~~~~~~l~~l~~~~--~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
|+|++++|..+.+ +..+. ...+..++++.+++++ ++.+|.++++|.|||||+||.+|++.+.+
T Consensus 218 Y~f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 218 WGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 9999999864422 01111 1223356777777776 79999999999999999999999987754
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=252.15 Aligned_cols=233 Identities=24% Similarity=0.385 Sum_probs=182.0
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEee-cChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~-~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
.|+|||||||.||||+|+|...||+|+||+|+ |||+|+++.+..+|+++|+|+++ ++.+.+++++.+ +.+|+
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~------g~~~g 75 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD------GSEFG 75 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc------ccccC
Confidence 48999999999999999999999999999999 99999999999999999999885 666778777643 33444
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEE-ecCHHHHHHHHHHcCCcEEEEEee
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~-~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
.. +.++. +.. +.|++++++.+.++++ .++++++.||.++ ..++.++++.|.+.+.+++++..+
T Consensus 76 ~~-i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (296)
T 1mc3_A 76 IQ-LEYAE--QPS-------PDGLAQAFIIGETFLN------GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQ 139 (296)
T ss_dssp CE-EEEEE--CSS-------CCCSTHHHHHTHHHHT------TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEE
T ss_pred ce-EEEec--cCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEE
Confidence 33 22221 221 3699999999999886 3678888899854 567999999997777788888887
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (378)
+.+ +..||++..|++|+|.+|.|||..+. ++++++|+|+|++++++. ++...+. .
T Consensus 140 v~d--p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~ 195 (296)
T 1mc3_A 140 VMD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSER 195 (296)
T ss_dssp CSC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSS
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHH-HHhcCcccc
Confidence 766 56899999988899999999986432 357899999999999854 4443222 1
Q ss_pred Cch-hcccccccccccceEEEEec-ce-EEecCCHHHHHHHHHhcc
Q 017030 245 NDF-GSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (378)
Q Consensus 245 ~~~-~~~~l~~l~~~~~i~~~~~~-~~-~~~i~t~~~~~~a~~~~l 287 (378)
.++ ..++++.+++.+++.++... ++ |.|+||++||.+|+..+.
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 196 GELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 111 24566666767778888775 75 999999999999998765
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-32 Score=248.10 Aligned_cols=242 Identities=18% Similarity=0.325 Sum_probs=154.2
Q ss_pred cceeEEEEcCCCCcccccccc-cCcccceee-cCeeeeeeeehhhhhhcCCcEEEEEeecCh-hhHHHHHHhhccCCCCc
Q 017030 7 RTVAAVILGGGAGTRLYPLTK-QRAKPAVPI-GGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~-~~pK~llpi-~g~~pli~~~l~~l~~~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~ 83 (378)
++|+|||||||.|+||+|+|. ..||+|+|| +|+ |||+|+++++.++ +++|+|++++.. +.+.+++...
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~------- 73 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE------- 73 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT-------
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh-------
Confidence 458999999999999999996 799999999 599 9999999999999 999999998874 5677776431
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEE-ecC-HHHHHHH---HHHcCCc
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMD-YMDFVQN---HRQSGAD 158 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~-~~d-~~~~l~~---h~~~~~~ 158 (378)
|+...+.++.... +.||+++++.+..+++. ++.|++++||+++ +.+ +.++++. |.++++.
T Consensus 74 -~~~~~~~~i~~~~---------~~gt~~al~~a~~~l~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (308)
T 2qh5_A 74 -IKNKSVGFLLESL---------SKNTANAIALSALMSDK-----EDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFL 138 (308)
T ss_dssp -CSSCEEEEEEESS---------CCCHHHHHHHHHHTSCT-----TSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hCCCccEEEeCCC---------CCChHHHHHHHHHHhCC-----CCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCE
Confidence 2221122322111 36999999999888742 3569999999987 677 8999987 7777888
Q ss_pred EEEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh
Q 017030 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
+|+.+.+..+ +..||++..+++++|..|.|||.....+.+.. ..++++++|+|+|++++|.+.++
T Consensus 139 ~t~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~~-------------~g~~~~n~Giy~~~~~~ll~~l~ 203 (308)
T 2qh5_A 139 VTFGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEFQK-------------SGGFYFNSGMFVFQAGVFLDELK 203 (308)
T ss_dssp EEEEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHHHH-------------HCCEEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHHhh-------------cCCeEEEeEEEEEEHHHHHHHHH
Confidence 8988887654 56799998877789999999987543211100 01368999999999988645544
Q ss_pred hhCCCC------------------Cchh---ccccc--------c-ccc-ccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 239 WRFPTA------------------NDFG---SEIIP--------A-SAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 239 ~~~~~~------------------~~~~---~~~l~--------~-l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
+..+.. .++. .++++ . +++ +.++.+++++++|.|||||++|.+++....
T Consensus 204 ~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~~ 283 (308)
T 2qh5_A 204 KHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANEP 283 (308)
T ss_dssp HHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC---------------
T ss_pred HhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcCc
Confidence 322110 1111 13332 2 444 468999999999999999999999987553
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=240.15 Aligned_cols=233 Identities=20% Similarity=0.311 Sum_probs=169.4
Q ss_pred eeEEEEcCCCCccccccc-ccCcccceeecC-eeeeeeeehhhhhhc-CCcEEEEEeecCh-hhHHHHHHhhccCCCCcc
Q 017030 9 VAAVILGGGAGTRLYPLT-KQRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt-~~~pK~llpi~g-~~pli~~~l~~l~~~-gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (378)
|++||||||.||||+|+| ..+||+|+|++| + |||+|+++++..+ |+++|+|++++.. ..+.+++... ..
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~------~~ 74 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPEL------PD 74 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTS------CG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcc------cc
Confidence 789999999999999999 779999999999 8 9999999999996 8999999998864 4566665431 11
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec--CHH----HHHHHHHHcCCc
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYM----DFVQNHRQSGAD 158 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~--d~~----~~l~~h~~~~~~ 158 (378)
+ . + ++... +.||++++..+...+.. ++.+++++||+++.. +|. .++++|.+.++.
T Consensus 75 ~--~-i-i~e~~----------~~gta~ai~~a~~~~~~-----~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~ 135 (336)
T 2x65_A 75 E--N-I-IAEPM----------KKNTAPACFIGTKLADD-----DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGL 135 (336)
T ss_dssp G--G-E-EEESS----------CCCHHHHHHHHHTTSCT-----TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSE
T ss_pred c--e-E-EeCCC----------CCCcHHHHHHHHHhhCC-----CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCe
Confidence 1 1 2 22211 25999999988765532 467999999997743 344 445557666778
Q ss_pred EEEEEeecCCCCCCcceEEEECCC-----CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 159 ITISCLPMDDSRASDFGLMKINNE-----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~-----~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
+|+.+.+..+ ...||++..+++ ++|..|.|||.....+.+..+ ..+++++|+|+|++++|
T Consensus 136 vt~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~-------------g~y~~n~Giy~~~~~~l 200 (336)
T 2x65_A 136 FTFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVES-------------GRFLWNSGMFLWKAREF 200 (336)
T ss_dssp EEEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHHHH-------------TCEEEEEEEEEEEHHHH
T ss_pred EEEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHHHhc-------------CCeEEEeeeEEEEHHHH
Confidence 8888777654 467999988654 789999999986543211111 23689999999999987
Q ss_pred HHHHhhhCCCC----------C-chhcccccc---------ccc-ccceEEEEecceEEecCCHHHHHHH
Q 017030 234 LNLLRWRFPTA----------N-DFGSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 234 ~~~l~~~~~~~----------~-~~~~~~l~~---------l~~-~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
.+.+++..+.. . +|..+.++. +++ ..++++++++++|.|||||++|.++
T Consensus 201 l~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 201 IEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 54544432210 0 222344443 333 4689999999999999999999999
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=227.16 Aligned_cols=221 Identities=15% Similarity=0.230 Sum_probs=159.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++|.|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+... . |+
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~-~--------~~ 93 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKE-K--------YG 93 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHH-H--------HC
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHH-h--------CC
Confidence 368999999999999999999999999999999 9999999999999999999999987777754432 2 22
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEEEee
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.++...+.. ..|++++++.+++.+ +++++++||+++..+ +..++ ++++.+|+ .
T Consensus 94 ---~~iv~~~~~~-------~~g~~~al~~a~~~~--------~~~lv~~~D~~~~~~~~~~~~----~~~~~~t~---~ 148 (254)
T 1jyk_A 94 ---VRLVFNDKYA-------DYNNFYSLYLVKEEL--------ANSYVIDADNYLFKNMFRNDL----TRSTYFSV---Y 148 (254)
T ss_dssp ---CEEEECTTTT-------TSCTHHHHHTTGGGC--------TTEEEEETTEEESSCCCCSCC----CSEEEEEC---E
T ss_pred ---cEEEECCCcc-------CCCcHHHHHHHHHHC--------CCEEEEeCCcccCHHHHHHHH----hCCceEEE---E
Confidence 2233322211 258999999887665 248899999987666 33322 23333333 2
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH---HHHHhhhCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL---LNLLRWRFP 242 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l---~~~l~~~~~ 242 (378)
..++ ...|+++ .|++|+|+.+.|++.. .++++|+|+|+++.+ .++++....
T Consensus 149 ~~~~-~~~~~v~-~d~~g~v~~~~e~~~~------------------------~~~~~Giy~~~~~~~~~l~~~l~~~~~ 202 (254)
T 1jyk_A 149 REDC-TNEWFLV-YGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYV 202 (254)
T ss_dssp ESSC-SSCCEEE-ECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHT
T ss_pred cccC-CCCeEEE-ECCCCeEEEEEECCCC------------------------CcEEEEEEEEcHHHHHHHHHHHHHHHh
Confidence 2221 2357755 7888999999997531 467999999998743 233333222
Q ss_pred C---CCchhcccccccccccceEEEEec-ceEEecCCHHHHHHHHHhccc
Q 017030 243 T---ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 243 ~---~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~ 288 (378)
. ...+..++++.+..+.++.++.++ ++|.+|+|++||.+|++.+.+
T Consensus 203 ~~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 203 SGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp TTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred cCCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 1 223345566777777889999887 799999999999999987753
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=235.11 Aligned_cols=234 Identities=20% Similarity=0.304 Sum_probs=165.1
Q ss_pred ceeEEEEcCCCCccccccc-ccCcccceeecC-eeeeeeeehhhhhhc-CCcEEEEEeecCh-hhHHHHHHhhccCCCCc
Q 017030 8 TVAAVILGGGAGTRLYPLT-KQRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt-~~~pK~llpi~g-~~pli~~~l~~l~~~-gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~ 83 (378)
+|.+||||||.|+||+|+| ..+||+|+|++| + |||+|+++++..+ |+++|+|++++.. ..+.+++. ..
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~------~~- 73 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD------GI- 73 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS------SS-
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhc------cC-
Confidence 4899999999999999999 689999999999 8 9999999999998 8999999998764 33433331 10
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec--CHHHHHHH----HHHcCC
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQN----HRQSGA 157 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~--d~~~~l~~----h~~~~~ 157 (378)
.+ ++... +.||++++..+.. +... ..++.+++++||+++.. .|..+++. |.+ ++
T Consensus 74 -----~~-i~e~~----------~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~ 133 (337)
T 2cu2_A 74 -----RL-LLEPL----------GRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GF 133 (337)
T ss_dssp -----EE-EEESS----------CCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TC
T ss_pred -----ce-EecCC----------CCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CC
Confidence 11 22211 2589999988876 5210 01478999999998753 25554443 433 67
Q ss_pred cEEEEEeecCCCCCCcceEEEECCC----CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 158 DITISCLPMDDSRASDFGLMKINNE----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 158 ~~ti~~~~~~~~~~~~~g~v~~d~~----~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
.+|+.+.+..+ +..||++..+++ ++|..|.|||.....+.+.. ..+++++|+|+|++++|
T Consensus 134 ~vt~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~~--------------~g~~~n~Giy~f~~~~l 197 (337)
T 2cu2_A 134 VVALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIR--------------KGYVWNGGVFAFAPATM 197 (337)
T ss_dssp EEEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHH--------------TTCEEEEEEEEECHHHH
T ss_pred eEEEeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHHHhh--------------cCCEEEEEEEEEeHHHH
Confidence 78888877654 567999988765 79999999998643322111 11589999999999987
Q ss_pred HHHHhhhCCCCC-ch--------hcccccc---------ccc-ccceEEEEecceEEecCCHHHHHHHHHh
Q 017030 234 LNLLRWRFPTAN-DF--------GSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 234 ~~~l~~~~~~~~-~~--------~~~~l~~---------l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~~ 285 (378)
.+.+++..+... .+ ..+.++. +++ ..++++++++++|.|+|||++|.++...
T Consensus 198 l~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~~ 268 (337)
T 2cu2_A 198 AELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFSQ 268 (337)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHTS
T ss_pred HHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhhc
Confidence 555554322110 00 0122332 333 4689999999999999999999998543
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=217.14 Aligned_cols=237 Identities=18% Similarity=0.242 Sum_probs=169.8
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
++.|||||||.|||| | ||+|+||+|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~---------~g- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA---------FG- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---------TT-
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH---------cC-
Confidence 588999999999999 3 8999999999 99999999999999999999884 4678777753 12
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.++...+. .+.||++ +..+...+.. ...+.|++++||. ++ ..++.++++.|.+.++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~Gt~~-~~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (252)
T 3oam_A 63 --GVVCMTSPN-------HQSGTER-LAEVVAKMAI---PADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVE 129 (252)
T ss_dssp --CEEEECCTT-------CCSHHHH-HHHHHHHTTC---CTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEE
T ss_pred --CEEEEcCCC-------CCCcHHH-HHHHHHhcCc---CCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeee
Confidence 122221221 1358888 4555556521 0158999999998 44 455899999998888899999998
Q ss_pred cCCCCCCcc-----eEEEECCCCCEEEEEecCCccchhcccccchhcccccccc--ccCcceeeeeEEEEeHHHHHHHHh
Q 017030 166 MDDSRASDF-----GLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA--EEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 166 ~~~~~~~~~-----g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
.++ +..| |.|..|++|+++.|.++|-........ .+. ...+++.++|+|+|++++|+.+..
T Consensus 130 v~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~----------~~~~~~~~~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 130 IED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFA----------KADKAIVQPLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp ECC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHH----------SSSCCCCSCEEEEEEEEEEETTHHHHHHH
T ss_pred cCC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccc----------cccccccccceEEEEEEEcCHHHHHHHHc
Confidence 875 3445 999999999999999998654211000 000 012478999999999999987654
Q ss_pred hhCCCCCchhc--ccccccccccceEEEEec-ceEEecCCHHHHHHHHHhcccC
Q 017030 239 WRFPTANDFGS--EIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH 289 (378)
Q Consensus 239 ~~~~~~~~~~~--~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~ 289 (378)
.. +...+..+ +.+..+-.+.+|.++..+ .+|.+||||+||.+|++.+.++
T Consensus 198 ~~-~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 198 WQ-PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp SC-CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CC-CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 32 22111111 223333346789998764 4689999999999999887653
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=198.79 Aligned_cols=238 Identities=16% Similarity=0.169 Sum_probs=159.0
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.|||||+|.||||. ||+|+||+|| |||+|+++.+.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~---------~g 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED---------FG 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---------TT
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH---------cC
Confidence 56899999999999994 8999999999 99999999999999999999885 4667777643 12
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHc-CCcEEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQS-GADITISC 163 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~-~~~~ti~~ 163 (378)
. .++...+. .+.|+++ +..+...+.. ...+.+++++||. ++.. .+..+++.|.+. ++++++++
T Consensus 70 ~---~v~~~~~~-------~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~ 135 (256)
T 3tqd_A 70 A---VVCMTSSD-------HQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLC 135 (256)
T ss_dssp C---EEEECCTT-------CCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_pred C---eEEEeCCC-------CCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 1 22221111 1357876 7777777731 0158999999999 4544 489999998774 56777777
Q ss_pred eecCCC----CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+..+. .+..++ |..|++|+++.|.++|.+........+ .......+++.+.|+|.|++++|+.+..
T Consensus 136 ~~v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~~~-------~~~~~~~~~~~~~GiY~y~~~~l~~~~~- 206 (256)
T 3tqd_A 136 TPITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFSDK-------ENLQLNGSHYRHVGIYAYRVGFLEEYLS- 206 (256)
T ss_dssp EECCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTTCG-------GGCCCSSCCEEEEEEEEEEHHHHHHHHH-
T ss_pred eEcCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccccc-------cccccCCcceEEEEEEEcCHHHHHHHHh-
Confidence 776431 123333 568889999999999864321000000 0000012468899999999999976643
Q ss_pred hCCCCCchhc--ccccccccccceEEEEecce-EEecCCHHHHHHHHHh
Q 017030 240 RFPTANDFGS--EIIPASANEQFLKAYLFNDY-WEDIGTIRSFFEANLA 285 (378)
Q Consensus 240 ~~~~~~~~~~--~~l~~l~~~~~i~~~~~~~~-~~~i~t~~~~~~a~~~ 285 (378)
..+...+..+ +.|+.+-.+.+|+++..+++ |.+||||+||.+|++.
T Consensus 207 l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 207 WDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp SCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred CCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 2222111111 23444556779999999875 8999999999999754
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=199.78 Aligned_cols=239 Identities=16% Similarity=0.215 Sum_probs=163.5
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
.+++.|||||||.|+|| | +|+|+|++|| |||+|+++.+.++|+++|+|+++ .+.+.+++.+ +
T Consensus 16 ~M~~~aIIlA~G~stRl-p-----~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~---------~ 77 (264)
T 3k8d_A 16 HMSFVVIIPARYASTRL-P-----GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA---------A 77 (264)
T ss_dssp --CCEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---------T
T ss_pred CCceEEEEEcCCCCCCC-C-----CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH---------c
Confidence 45689999999999999 2 5999999999 99999999999999999999884 4667776643 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+ +.++...+. .+.||++ +..+...+.. ...+.+++++||. ++. .++..+++.|.+.++++++++
T Consensus 78 g---~~v~~~~~~-------~~~Gt~~-i~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~ 143 (264)
T 3k8d_A 78 G---GEVCMTRAD-------HQSGTER-LAEVVEKCAF---SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLA 143 (264)
T ss_dssp T---CEEEECCTT-------CCSHHHH-HHHHHHHHTC---CTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEE
T ss_pred C---CEEEEecCC-------CCCCHHH-HHHHHHHhcc---CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEE
Confidence 2 112211111 1357876 7777777731 1158999999999 444 458999999988888999999
Q ss_pred eecCCC----CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+..++ .+..+ .|..|++|+++.|.++|.......+..+ ..+ ...+++.++|+|+|++++|+.+...
T Consensus 144 ~~v~d~~~~~~p~~v-kVv~d~~g~~l~fsr~~ip~~r~~~~~~-------~~~-~~~~~~~~~GiY~y~~~~l~~~~~~ 214 (264)
T 3k8d_A 144 VPIHNAEEAFNPNAV-KVVLDAEGYALYFSRATIPWDRDRFAEG-------LET-VGDNFLRHLGIYGYRAGFIRRYVNW 214 (264)
T ss_dssp EECCSHHHHTCTTSC-EEEECTTSBEEEEESSCCSCCHHHHHHC-------SSC-CCSCCEEECSEEEEEHHHHHHHHHS
T ss_pred EEcCCHHHccCCCce-EEEECCCCeEEEEecCCCCCCCcccccc-------ccc-cCCcceEEEEEEEECHHHHHHHHhC
Confidence 987652 11222 3567889999999999864221100000 000 0123678999999999999876542
Q ss_pred hCCCCCchhc--ccccccccccceEEEEec-ceEEecCCHHHHHHHHHhc
Q 017030 240 RFPTANDFGS--EIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 240 ~~~~~~~~~~--~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~ 286 (378)
.+...+..+ +.|+.+-.+.+|+++... .+|.+|+||+||..|+..+
T Consensus 215 -~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 215 -QPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp -CCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred -CCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 122111111 233444457789998654 4689999999999998754
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=190.27 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=153.4
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+ + .
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~---------~-~ 61 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVED---------L-C 61 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT---------T-S
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh---------c-e
Confidence 5789999999999996 9999999999 9999999999999 9999999876 567666642 1 1
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
. +.+. .+. ...|+++++ .+...++ .+.+++++||. +++ .++.++++.|.+.++.++++...
T Consensus 62 ~-~~~~--~~~-------~~~g~~~~~-~~~~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 124 (234)
T 2y6p_A 62 E-VFLT--PSD-------LPSGSDRVL-YVVRDLD------VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKD 124 (234)
T ss_dssp E-EEEC--CTT-------CCSHHHHHH-HHHTTCC------CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred E-EEEC--Ccc-------cccchHHHH-HHHHhCC------CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCC
Confidence 1 2111 111 124787766 3444432 47899999999 777 55899999998877545555442
Q ss_pred cCC-CCCCcceEEEECCCCCEEEEEecCCcc-chhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 166 MDD-SRASDFGLMKINNEGRVLSFSEKPKGK-DLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 166 ~~~-~~~~~~g~v~~d~~~~v~~~~ek~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
... ..+..++ +..+++|++..+.|++... +.+ . ....+.++|+|+|+++.|.++.+.. +.
T Consensus 125 ~~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~~~-------------~---~~~~~~~~giy~~~~~~l~~~~~~~-~~ 186 (234)
T 2y6p_A 125 KEAYERPEDVK-VVLDREGYALYFSRSPIPYFRKN-------------D---TFYPLKHVGIYGFRKETLMEFGAMP-PS 186 (234)
T ss_dssp SGGGGCTTSCE-EEECTTSBEEEEESSCCSCCSSC-------------C---SSCCEEEEEEEEEEHHHHHHHHHSC-CC
T ss_pred HHHhcCCCceE-EEEcCCCCEeeeecCCCCccccc-------------c---cceeeEEEEEEEcCHHHHHHHHhCC-CC
Confidence 111 1123344 3457789999999987531 100 0 0124679999999999987665421 11
Q ss_pred CCchhccccc---ccccccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 244 ANDFGSEIIP---ASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 244 ~~~~~~~~l~---~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
..+. .+.+. .+..+.++.++..+++|.||+||+||..|++.+
T Consensus 187 ~~~~-~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 187 KLEQ-IEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHH-HHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred ccch-hhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 1111 12222 233477899999999999999999999998765
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=190.59 Aligned_cols=214 Identities=18% Similarity=0.221 Sum_probs=135.1
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|.|||||||.|+||+|+ ||+|+|++|+ |||+|+++.+.++ +++|+|++ +..+++.+++.+.+
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~-------- 80 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDK-------- 80 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTS--------
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhc--------
Confidence 55799999999999999976 9999999999 9999999999999 99999999 77777777753322
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
+. .+.++..... ..|++++++.+..+++ +++++++||++++.+ +..+++ .. . +++..
T Consensus 81 ~~-~~~~v~~~~~--------~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~----~~-~-~~~~~ 138 (232)
T 2xme_A 81 GF-NYKIVRHDRP--------EKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVR----GE-G-VIADR 138 (232)
T ss_dssp CC-CEEEEECSCG--------GGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTT----CC-E-EEEES
T ss_pred CC-cEEEEECCCC--------CCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHh----CC-C-cEEEc
Confidence 11 1334332211 1589999999887763 579999999987554 344433 21 2 22222
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
.....+...++.+..+ +|++..+.+++.. .+.+++|+|++++++|. .+++.....
T Consensus 139 ~~~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~~g 193 (232)
T 2xme_A 139 EPRFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRDRE 193 (232)
T ss_dssp SCSSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTTSS
T ss_pred cccccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHhcC
Confidence 1111123456767665 6899999887642 24578999999999986 444432111
Q ss_pred CchhcccccccccccceEEEEec-ceEEecCCHHHHHHHHHh
Q 017030 245 NDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~ 285 (378)
+..++.+++.+++..+.++ ++|.+|+||+||.+++..
T Consensus 194 ----~~~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 194 ----EIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp ----CCCHHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred ----hhHHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 1224445555567777765 689999999999988754
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=183.99 Aligned_cols=237 Identities=15% Similarity=0.143 Sum_probs=160.2
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeeh-hhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-SNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l-~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
..|||||+|.|+||. +|+|+||+|+ |||+|++ +.+.++++++|+|+++. +.+.+++.+ ++.
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~~---------~g~ 63 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICRA---------EGV 63 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHT---------TTC
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHHH---------cCC
Confidence 469999999999995 5999999999 9999999 99998899999999853 567666642 121
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHc-CCcEEEEEe
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQS-GADITISCL 164 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~-~~~~ti~~~ 164 (378)
..+. ..+. ...|+ +++..+...+... ..+.++++.||. +... .+..+++.|.+. ++.+..++.
T Consensus 64 ~v~~---~~~~-------~~~Gt-~~i~~a~~~~~~~---~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~ 129 (253)
T 4fcu_A 64 DVVL---TSAD-------HPSGT-DRLSEVARIKGWD---ADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE 129 (253)
T ss_dssp CEEE---CCTT-------CCCHH-HHHHHHHHHHTCC---TTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE
T ss_pred eEEE---eCCC-------CCChH-HHHHHHHHhcCcC---CCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE
Confidence 2111 1111 12466 4777887777420 147899999999 5554 489999999876 344444444
Q ss_pred ecCC----CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh
Q 017030 165 PMDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (378)
Q Consensus 165 ~~~~----~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~ 240 (378)
+..+ ..+..+ .|..|++|+++.|.++|..........+ .+.....++.++|+|+|++++|.++...
T Consensus 130 ~~~~~~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~f~~~~l~~~~~~- 199 (253)
T 4fcu_A 130 PIHALDEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKRD--------EPTLHTQAFRHLGLYAYRVSLLQEYVTW- 199 (253)
T ss_dssp ECCCHHHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSSS--------SCCCCSCCEEEEEEEEEEHHHHHHHTTS-
T ss_pred EcCCHHHccCCCcc-EEEECCCCeEEEecCCCCCCCCCccccc--------ccccccceeEEEEEEEeCHHHHHHHHhC-
Confidence 4321 123343 5678889999999998864321110000 0000123577999999999999876432
Q ss_pred CCCCCchh-cccc---cccccccceEEEEecce-EEecCCHHHHHHHHHhcccC
Q 017030 241 FPTANDFG-SEII---PASANEQFLKAYLFNDY-WEDIGTIRSFFEANLALTAH 289 (378)
Q Consensus 241 ~~~~~~~~-~~~l---~~l~~~~~i~~~~~~~~-~~~i~t~~~~~~a~~~~l~~ 289 (378)
.+ ..+. .+.| +.+-.+.+|+++..+++ |.+|+||+||.+|++.+.++
T Consensus 200 ~~--~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 200 EM--GKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp CC--CHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred CC--CcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 11 1221 1233 33345779999999999 99999999999999877543
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=182.39 Aligned_cols=227 Identities=18% Similarity=0.257 Sum_probs=155.8
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCC-cEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGI-NKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi-~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++.+. +
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~~---------~ 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF---------G 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT---------T
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHHc---------C
Confidence 589999999999999 5 9999999999 999999999999996 999999975 5677666431 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHc-CCcEEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQS-GADITISC 163 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~-~~~~ti~~ 163 (378)
+.++...+. ...|+++++. +...++ .+.+++++||. +.. .++..+++.|.+. ++++++.+
T Consensus 64 ---~~~~~~~~~-------~~~g~~~~~~-~~~~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~ 126 (245)
T 1h7e_A 64 ---GKAIMTRND-------HESGTDRLVE-VMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126 (245)
T ss_dssp ---CEEEECCSC-------CSSHHHHHHH-HHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ---CeEEeCCCc-------cCCcHHHHHH-HHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 223322111 1247766554 444443 47899999999 444 4489999999887 78888777
Q ss_pred eecCCCC--CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 164 LPMDDSR--ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 164 ~~~~~~~--~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
.+.+... ......+..+++|++..|.+++....... ...+.+.++|+|+|+++.|.+++ ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~-~~- 189 (245)
T 1h7e_A 127 HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYS-QL- 189 (245)
T ss_dssp EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGG-GS-
T ss_pred ecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHH-hC-
Confidence 7762110 11122233467789999988654311000 00124679999999999886655 22
Q ss_pred CCCCch-hcccccccc---cccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 242 PTANDF-GSEIIPASA---NEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 242 ~~~~~~-~~~~l~~l~---~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
+ ...+ ..+.++.+. .+.++.++..+++|.||+||+||..|+..+.
T Consensus 190 ~-~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 190 P-ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp C-CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred C-CCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 1 1111 124444432 3668999999999999999999999987664
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=179.51 Aligned_cols=243 Identities=18% Similarity=0.239 Sum_probs=159.6
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.++++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~-~--------~- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS-F--------G- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH-T--------T-
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh-c--------C-
Confidence 5789999999999994 4999999999 999999999999999999999865 456666643 1 1
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.++...+. ...|++ .+..+...+... ..+.+++++||. +.. .++.++++.|.+.++++++++.+
T Consensus 63 --~~~~~~~~~-------~~~g~~-~~~~~~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (262)
T 1vic_A 63 --AEVCMTSVN-------HNSGTE-RLAEVVEKLAIP---DNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVK 129 (262)
T ss_dssp --CEEEECCCS-------SCCHHH-HHHHHHHHTTCC---TTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred --CEEEECCcc-------ccCChH-HHHHHHHHhccC---CCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 122221111 123665 455565555321 147899999998 444 45899999998888888888887
Q ss_pred cCCC---CCCcceEEEECCCCCEEEEEecCCc-cchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 166 MDDS---RASDFGLMKINNEGRVLSFSEKPKG-KDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 166 ~~~~---~~~~~g~v~~d~~~~v~~~~ek~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
..+. ....++.+..+++|++..|.+++.. .+.+ +..+ +.....+ ....++.++|+|+|+++++..+....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~-~~~~---~~~~~~~-~p~~~~~~~giy~~~~~~l~~~~~~~- 203 (262)
T 1vic_A 130 IHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQ-FMNL---QDVQKVQ-LSDAYLRHIGIYAYRAGFIKQYVQWA- 203 (262)
T ss_dssp CCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHH-HTTC---SCGGGCC-CCTTCEEEEEEEEEEHHHHHHHHHSC-
T ss_pred cCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcc-cccc---ccccccc-cccceEEEEEEEEeeHHHHHHHHhCC-
Confidence 7542 0134555666778999999887632 1110 0000 0000000 00125689999999999887653321
Q ss_pred CCCCchhcccccc--cc-cccceEEEEec-ceEEecCCHHHHHHHHHhcccC
Q 017030 242 PTANDFGSEIIPA--SA-NEQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH 289 (378)
Q Consensus 242 ~~~~~~~~~~l~~--l~-~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~ 289 (378)
+...+. .+++.. ++ .+.++.++..+ ++|.||+||+||..|+..+...
T Consensus 204 ~~~~~~-~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 204 PTQLEN-LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp CCHHHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCchhh-hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 111111 112222 33 46689999998 7999999999999999887643
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=170.00 Aligned_cols=223 Identities=12% Similarity=0.078 Sum_probs=138.0
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecCh-hhHHHHHHhhccCCCCcccC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 86 (378)
|.|||||||.|+||++ .++||+|+|++|+ |||+|+++.+.++ ++++|+|++++.. +.+.+++.+ + +..+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~-~----~~~~~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK-Y----LPLYK 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH-H----CGGGG
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh-c----ccccc
Confidence 7899999999999997 6689999999999 9999999999998 5999999998876 556666543 2 11110
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCC--CCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK--VIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITIS 162 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~--~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ti~ 162 (378)
....+.. . | .|++++++.++..+... .. ..+.+++++||. ++.. ++..+++.|.+.++ +++
T Consensus 75 -~~~~~~~--~-----~----~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~ 139 (236)
T 2vsh_A 75 -ERIIITK--G-----G----ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDT 139 (236)
T ss_dssp -GGEEEEE--C-----C----SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEE
T ss_pred -CceEEEC--C-----C----CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEE
Confidence 0122211 0 0 36888999888877310 00 036789999999 5554 58999999887654 344
Q ss_pred EeecCCCCCCcceEEEECCCC-CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 163 CLPMDDSRASDFGLMKINNEG-RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~-~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
+.+..+ + +..+++| ++..+.+++.. .. ....|+|+++.+.++++...
T Consensus 140 ~~~~~~--~-----~~~~~~g~~~~~~~~~~~~------------------------~~-~~~p~~f~~~~l~~~~~~~~ 187 (236)
T 2vsh_A 140 VVEAVD--T-----IVESTNGQFITDIPNRAHL------------------------YQ-GQTPQTFRCKDFMDLYGSLS 187 (236)
T ss_dssp EEECCS--C-----EEECSSSSBCCBCCCGGGE------------------------EE-EEEEEEEEHHHHHHHHHTCC
T ss_pred EEeccc--c-----EEEeCCCCeeeeecChHHh------------------------ee-ecCCcEecHHHHHHHHHHHH
Confidence 445443 1 2223567 77766654321 11 12488999998876665421
Q ss_pred CCCCch-hccccccccc-ccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 242 PTANDF-GSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 242 ~~~~~~-~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
.. ... ..+.+..+.. +.++..+..+++|.||+||+||..|+..+.
T Consensus 188 ~~-g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 188 DE-EKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HH-HHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred hc-CCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 10 000 1122222222 457888888889999999999999987654
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=166.29 Aligned_cols=214 Identities=18% Similarity=0.142 Sum_probs=146.8
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChh-hHHHHHHhhccCCCCccc
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (378)
+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++... .+.+++. +.
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~-------~~-- 68 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG-------GE-- 68 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC-------BT--
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc-------cC--
Confidence 5899999999999998 4689999999999 99999999999988 9999999987653 3444331 00
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ti~~ 163 (378)
.+.++.. . .+.+++++.++..++. .+.+++++||. +.+. ++..+++.|. .+.++++.+
T Consensus 69 ---~v~~~~~--~---------~~~~~~i~~al~~~~~-----~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~ 128 (223)
T 2xwl_A 69 ---DSVIVSG--G---------VDRTESVALALEAAGD-----AEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPG 128 (223)
T ss_dssp ---TEEEEEC--C---------SSHHHHHHHHHTTCTT-----CSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEE
T ss_pred ---CeEEEcC--C---------CCHHHHHHHHHHhcCC-----CCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEE
Confidence 1333321 1 2578889888877621 47889999998 5554 5899998883 345667766
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+..+ + ..+ .|++|++..+.|++.. ......|+|++..+..+++...
T Consensus 129 ~~~~d--~--~~~--~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~-- 175 (223)
T 2xwl_A 129 LAPAD--T--IKA--VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT-- 175 (223)
T ss_dssp ECCSS--C--EEE--ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC--
T ss_pred Eeccc--c--eEE--EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh--
Confidence 66543 2 222 2667888888776421 1123468899988766654321
Q ss_pred CCchhccccccccc-ccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 244 ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
..+..+....+.. +.++..+..+++|.||+||+||..|+..+..
T Consensus 176 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 176 -AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp -SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred -CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 1111122222222 4578888888899999999999999876643
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=170.92 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=147.5
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhh-HHHHHHhhccCCCCc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSAS-LNRHLARAYNYGSGV 83 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~-i~~~l~~~~~~~~~~ 83 (378)
|+++.|||||||.|+||++ .++||+|+|++|+ |||+|+++.+.+++ +++|+|++++.... +.+.+.... ..
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~-~~--- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYI-SD--- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHC-CC---
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhC-CC---
Confidence 3468999999999999986 4689999999999 99999999999987 99999999876543 444443321 11
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCC-CCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR-NKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADIT 160 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~-~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~t 160 (378)
..+.++.. + .+..++++.++..+.+.. ....+.+++++||. +... .+.++++.|.+.++.+
T Consensus 74 ----~~~~~~~~-~----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i- 137 (246)
T 3f1c_A 74 ----DRIVVIEG-G----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVD- 137 (246)
T ss_dssp ----TTEEEEEC-C----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEE-
T ss_pred ----CCEEEECC-C----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEE-
Confidence 11333321 1 257788998888875200 00147899999998 4444 4899999998876543
Q ss_pred EEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh
Q 017030 161 ISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (378)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~ 240 (378)
.+.+..+ .++..++++.+..+.+++.. +..-..++|+.+.|.+++++.
T Consensus 138 -~~~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~ 185 (246)
T 3f1c_A 138 -TVIEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNL 185 (246)
T ss_dssp -EEEECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTS
T ss_pred -EEEeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHH
Confidence 3444432 33444455666666555431 122356799999887777653
Q ss_pred CCCCCchhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 241 FPTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 241 ~~~~~~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
.........|.+..+. .+.++..+..+.+|.+|+||+||..|+..+..+.
T Consensus 186 ~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 186 TPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp CHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred HHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 1110011122222222 2568999999989999999999999998876543
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=162.55 Aligned_cols=220 Identities=12% Similarity=0.110 Sum_probs=133.4
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
++|.|||||||.|+||++ +.||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +.+.. .
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~-~------ 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAF-P------ 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHC-T------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcC-C------
Confidence 458999999999999985 579999999999 99999999999885 99999999887766765 54311 0
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCC-CCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR-NKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~-~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
..+.++. . ..|++++++.+...+.... ....+.+++++||. +++.+ +..+++.|.+.+..+ +.
T Consensus 73 --~~i~~~~--~---------~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~-~~ 138 (231)
T 1vgw_A 73 --QVRVWKN--G---------GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGG-IL 138 (231)
T ss_dssp --TSEEECC--C---------CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCE-EE
T ss_pred --CceEEEc--C---------CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeE-EE
Confidence 1133331 1 1479999999888773100 00147899999998 55544 889998886554233 44
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
+.+..+. .... ++|++....++.. .....+.|+|+++.|.++++....
T Consensus 139 ~~~~~~~------~~~~-~~g~i~~~~~~~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~~ 186 (231)
T 1vgw_A 139 AVPVADT------LKRA-ESGQISATVDRSG-------------------------LWQAQTPQLFQAGLLHRALAAENL 186 (231)
T ss_dssp EEECCSC------EEEE-SSSBEEEEECCTT-------------------------EEEEEEEEEEEHHHHHHHHHC---
T ss_pred Eeecccc------eEEe-CCCceEecCChHH-------------------------heeeeCCcEecHHHHHHHHHHHhh
Confidence 4444321 1112 3455554332210 111234899999988776654211
Q ss_pred CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
........++..+ +.++..+..++.|.||+||+||..|+..+
T Consensus 187 ~g~~~~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 187 GGITDEASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp -CCCSHHHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred cCCCcHHHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 1100011122221 45788888778899999999999998765
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=164.85 Aligned_cols=217 Identities=15% Similarity=0.125 Sum_probs=145.3
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+++.|||||||.|+||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|++++ +.+.+++.+ +
T Consensus 3 m~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~-------- 64 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN-F-------- 64 (228)
T ss_dssp CEEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH-T--------
T ss_pred CceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH-c--------
Confidence 35779999999999996 9999999999 99999999999998 7999999953 445555532 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+ +.++........ ...|++++++.+++.+.. ..+.+++++||. +.. .++..+++.|.+.++++++.+
T Consensus 65 ~---~~~~~~~~~~~~----~~~g~~~sv~~~l~~~~~----~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~ 133 (228)
T 1ezi_A 65 G---VEVVLRPAELAS----DTASSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA 133 (228)
T ss_dssp T---CEEEECCC----------CHHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE
T ss_pred C---CEEEeCchHHcC----CCCChHHHHHHHHHHhCC----CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 111111100000 014789999999988842 137899999998 444 458889888877777777777
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCc-cchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKG-KDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
.+..+. + ++....+++|.+..+.++... ...+. ....+..++|+|+++++.+.+.+
T Consensus 134 ~~~~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~giy~~~~~~l~~~~----- 190 (228)
T 1ezi_A 134 CPMEHH-P--LKTLLQINNGEYAPMRHLSDLEQPRQQ---------------LPQAFRPNGAIYINDTASLIANN----- 190 (228)
T ss_dssp EECSSC-T--TSCEEECC--CEEESSCHHHHTCCGGG---------------SCCEEEEEEEEEEEEHHHHHHHT-----
T ss_pred EecCCC-c--ceeeEEcCCCcEeeccccccccCCccc---------------CchhheeeeEEEEEeHHHHhhCC-----
Confidence 776542 2 333334677888888662110 00000 00123467899999998775431
Q ss_pred CCCchhcccccccccccceEEEEec-ceEEecCCHHHHHHHHHhcc
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l 287 (378)
.+ .+.++..+..+ .+|.||+||+||..|+..+.
T Consensus 191 -------~~-----~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 191 -------CF-----FIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp -------SS-----CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred -------cc-----cCCceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 01 15567777765 58999999999999987664
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=165.32 Aligned_cols=219 Identities=12% Similarity=0.105 Sum_probs=137.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+++.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.++ ++++|+|++++..+.+.+++... +
T Consensus 3 ~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~--------~ 70 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEES--------I 70 (228)
T ss_dssp TCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTT--------S
T ss_pred cceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHh--------C
Confidence 46899999999999997 4579999999999 9999999999998 89999999988776665554321 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ti~~ 163 (378)
+. .+.++.. . .|..++++.+++.+.. ..+.++++.||. ++.. ++..+++.|.+.++ ++++
T Consensus 71 ~~-~v~~~~~--~---------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 DV-DLSFAIP--G---------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp SS-EEEEECC--C---------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred CC-cEEEECC--C---------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 11 1333321 1 3788999999887742 136788999997 5554 48999998876653 4445
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+..+ .+...++++.+.++.+++. ..... ..|+|+++.|.+.++.....
T Consensus 133 ~~~~~------~~~~~~~~~~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 133 VPAKA------TIKEVNSDSLVVKTLDRKT------------------------LWEMQ-TPQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EECCS------CCCCBCTTSCBCCCCSCCC------------------------CEEEE-EEEEECHHHHHHHHHHHHHH
T ss_pred Eeccc------eEEEEcCCCceEEecCccc------------------------eEEEe-CCcEEEHHHHHHHHHHHHhc
Confidence 54432 1112244445543322211 12233 48999988776665432111
Q ss_pred CCchhccccccccc-ccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 244 ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 244 ~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
.. ...+.+..+.. +.++..+..+..|.+|+||+||..|+..+.
T Consensus 182 ~~-~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 225 (228)
T 2yc3_A 182 GL-EVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (228)
T ss_dssp TC-CCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred CC-CcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHh
Confidence 10 11223222222 456765555667999999999999987664
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=173.66 Aligned_cols=325 Identities=11% Similarity=0.078 Sum_probs=193.9
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeec-Ceeeeeeeehhhhhhc----CCc-EEEEEee-cChhhHHHHHHhhcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GIN-KVYILTQ-YNSASLNRHLARAYN 78 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~-g~~pli~~~l~~l~~~----gi~-~I~iv~~-~~~~~i~~~l~~~~~ 78 (378)
..++.+||||||.||||+ .+.||+|+||+ |+ |||+|+++++.+. |+. .++|+++ +..+.+++++.+...
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~ 165 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSA 165 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCS
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccc
Confidence 467889999999999998 78999999999 99 9999999998876 543 3666665 888889999876321
Q ss_pred CCCCcccCCceEEEeccccCC------------CcC-----CCccccCcHHHHHHH-----HHHhcCCCCCCCCeEEEEc
Q 017030 79 YGSGVTFGDGCVEVLAATQTP------------GEA-----GKRWFQGTADAVRQF-----HWLFEDPRNKVIEDVLILS 136 (378)
Q Consensus 79 ~~~~~~~~~~~i~i~~~~~~~------------~~~-----~~~~~~Gt~~al~~~-----~~~i~~~~~~~~~~~lv~~ 136 (378)
+ +.. +.++ .|.. ... -...+.|||+++... ++.+.. .+.++++|++
T Consensus 166 f------g~~-i~~f--~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~---~g~~~v~V~n 233 (488)
T 2i5k_A 166 N------RIR-IRSF--NQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIA---QGREILFVSN 233 (488)
T ss_dssp S------SCE-EEEE--CCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHH---TTCCEEEEEC
T ss_pred c------Cce-EEEE--EeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHh---cCCCEEEEEe
Confidence 2 221 1111 1210 000 012468999999743 344411 1258999999
Q ss_pred CCeEEe-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCC--EEEEEecCCccchhcccccchhccccccc
Q 017030 137 GDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQE 213 (378)
Q Consensus 137 gD~~~~-~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~ 213 (378)
||++.. .|+. ++.+|.++++++++.+.+..++ ...||.+..+ +|+ ++++.+.+...... .. +
T Consensus 234 gDnL~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p-~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~~-~~-----------~ 298 (488)
T 2i5k_A 234 GDNLGATVDLK-ILNHMIETGAEYIMELTDKTRA-DVKGGTLISY-DGQVRLLEVAQVPKEHIDE-FK-----------N 298 (488)
T ss_dssp TTBSSCCCCHH-HHHHHHHSCCSEEEEEEECCGG-GSSSCEEEEE-TTEEEEECGGGSCTTSHHH-HT-----------C
T ss_pred CCcCCCcccHH-HHHHHHhcCCcEEEEEEEecCC-CCceeEEEEE-CCcEEEEEeccCCHHHHhh-cc-----------c
Confidence 999776 4675 6689999999999999887652 2459988764 565 33333444332110 00 0
Q ss_pred cccCcceeeeeEEEEeHHHHHHHHhhhCCCCC---------------------chhcccccccccccceEEEEec-ceEE
Q 017030 214 AEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---------------------DFGSEIIPASANEQFLKAYLFN-DYWE 271 (378)
Q Consensus 214 ~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~---------------------~~~~~~l~~l~~~~~i~~~~~~-~~~~ 271 (378)
.......|+|+|+|+.+.|.+++++...... .+..++++.+ + ...++..+ ..|.
T Consensus 299 -~~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~--~-~~~~~~V~R~~F~ 374 (488)
T 2i5k_A 299 -IRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF--D-GAHGVVVPRSRFL 374 (488)
T ss_dssp -TTTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS--S-SCEEEEECGGGCC
T ss_pred -ccccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc--c-CceEEEecccccc
Confidence 0112467999999999999888875321110 1111222211 1 22333332 3588
Q ss_pred ecCCHHHHHHHHHhcccCCCCccccCCC-CcEEccCC--------------CC-CCcee--eCceee-eeEEecCcEEcc
Q 017030 272 DIGTIRSFFEANLALTAHPPMFSFYDAT-KPIYTSRR--------------NL-PPSKI--DDSKIV-DSIISHGSFITS 332 (378)
Q Consensus 272 ~i~t~~~~~~a~~~~l~~~~~~~~~~~~-~~i~~~~~--------------i~-~~~~i--~~~~i~-~s~Ig~~~~I~~ 332 (378)
.+.+..+++.+..++.....+.....+. ..+.+... +. .|..+ ..-+|+ +...|+|+.+.|
T Consensus 375 PvKn~~~ll~~~~~~~~~~~g~~~~~~~~~e~~P~v~~~~~~~~~~~~~~rf~~~p~i~~~~~l~v~Gdv~fg~~v~l~G 454 (488)
T 2i5k_A 375 PVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRG 454 (488)
T ss_dssp BCCSHHHHHHHTSTTEEEETTEEEECTTCCSSCCEEEECGGGSSHHHHHHHCSSCCBCTTEEEEEEESSEEECTTCEEEE
T ss_pred cccCCccHHHHHHHHHHHhcCcEeecCCcCCCCCeEEECCcccchhhHHhhcCCCccccccceEEEEeeeEEcCCcEEEE
Confidence 8999888876665433211111111111 00111000 11 13333 122332 677888888876
Q ss_pred eEEeeceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 333 SFIEHSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 333 ~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.+..+-=|....|-+|+.++|.++..+..|-|
T Consensus 455 ~v~i~a~~~~~~~ip~g~~l~n~~~~~~~~~~~ 487 (488)
T 2i5k_A 455 TVIIVCSDGHKIDIPNGSILENVVVTGNLQILE 487 (488)
T ss_dssp EEEEECCTTCCEEECTTCEEEEEEEEEEEEEEE
T ss_pred EEEEEcCCCCeEEeCCCCEEecceeeccccccc
Confidence 544433335567899999999998877666543
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-21 Score=170.66 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=135.3
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
+|.|||||||. |||++.+...||+|+|++|+ |||+|+++.+..++. +|+|++. . +++.+++ +
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~-~-~~i~~~~------------~- 63 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGE-N-PGLVPAP------------A- 63 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESC-C-SSCSSCC------------S-
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeC-h-HHHhhhc------------C-
Confidence 58999999999 77776666689999999999 999999999999998 8888654 2 3332211 1
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.+ .. ..|++++++.+.+.++ +.+++++||. +...++..+++ | +.++++++...+
T Consensus 64 --~~~---~~---------~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~ 120 (232)
T 2dpw_A 64 --LTL---PD---------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVP 120 (232)
T ss_dssp --EEE---CC---------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEE
T ss_pred --eEe---cC---------CCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEee
Confidence 233 11 2589999999987763 7899999999 44445888888 6 566778877766
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC----
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---- 241 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~---- 241 (378)
.++. ...|+.+ .+++..+.||| .+++|+|+|+++++..+.+...
T Consensus 121 ~~~~-~~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~ 168 (232)
T 2dpw_A 121 KEAV-EARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVA 168 (232)
T ss_dssp HHHH-HHHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHH
T ss_pred ccch-hhhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHH
Confidence 4321 1223322 23566665543 3689999999998865433210
Q ss_pred -CC-------------------CCchhccccccccc--ccceEEEEe--cceEEecCCHHHHH
Q 017030 242 -PT-------------------ANDFGSEIIPASAN--EQFLKAYLF--NDYWEDIGTIRSFF 280 (378)
Q Consensus 242 -~~-------------------~~~~~~~~l~~l~~--~~~i~~~~~--~~~~~~i~t~~~~~ 280 (378)
.. ......+++..++. +.++..+.. .+.|.|||||+||.
T Consensus 169 ~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 169 LRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred hccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 00 01112233333332 367888887 46799999999984
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-19 Score=156.50 Aligned_cols=221 Identities=14% Similarity=0.132 Sum_probs=140.2
Q ss_pred cccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCc
Q 017030 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGV 83 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~ 83 (378)
++++|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +..
T Consensus 4 ~~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-------- 70 (236)
T 1i52_A 4 THLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL-------- 70 (236)
T ss_dssp -CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG--------
T ss_pred CCCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh--------
Confidence 3567999999999999997 4579999999999 99999999999887 89999999876555543 321
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti 161 (378)
++...+.++.. . .|+.++++.++..+.. .+.+++++||. +.+.+ +..+++.+.+.++.. +
T Consensus 71 -~~~~~v~~~~~--~---------~g~~~~i~~al~~~~~-----~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~ 132 (236)
T 1i52_A 71 -ANHPQITVVDG--G---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETSRTGG-I 132 (236)
T ss_dssp -GGCTTEEEEEC--C---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-E
T ss_pred -cCCCCEEEECC--C---------CCHHHHHHHHHHhcCC-----CCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-E
Confidence 11111333321 1 3788899988877742 47899999998 55554 788888776554233 3
Q ss_pred EEeecCCCCCCcceEEEECCC-CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh
Q 017030 162 SCLPMDDSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (378)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~ 240 (378)
.+.+..+ +....+++ |++....+... .+...+.++|+.+.+.++++..
T Consensus 133 ~~~~~~~------~~~~~~~~~~~i~~~~~~~~-------------------------i~~~~~p~~f~~~~l~~~~~~~ 181 (236)
T 1i52_A 133 LAAPVRD------TMKRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRA 181 (236)
T ss_dssp EEEECCS------CEEEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEeccc------cEEEEcCCCCceeeccChHh-------------------------heeeeCCceecHHHHHHHHHHH
Confidence 3344332 11112333 45543321100 1112266788887776665442
Q ss_pred CCCCCchh--cccccccccccceEEEEecceEEecCCHHHHHHHHHhcccC
Q 017030 241 FPTANDFG--SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (378)
Q Consensus 241 ~~~~~~~~--~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~ 289 (378)
......+. ..++.. .+.++..+..++.|.||+||+||..|+..+.++
T Consensus 182 ~~~g~~~td~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 182 LNEGATITDEASALEY--CGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HHTTCCCCSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred HhcCCCcccHHHHHHH--cCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 11111110 012222 145677787778899999999999998877544
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=156.52 Aligned_cols=217 Identities=15% Similarity=0.186 Sum_probs=134.4
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ +
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~---------~ 63 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ---------F 63 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH---------T
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH---------c
Confidence 46889999999999994 5999999999 99999999999998 599998883 4567666643 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+ +.++........ + ..+..++++.+...+.. .+.+++++||. +.+ .++..+++.|.+.+++.++.+
T Consensus 64 g---~~~~~~~~~~~~---~-~~~~~~~v~~al~~~~~-----~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 64 G---AQVHRRSSETSK---D-SSTSLDAIVEFLNYHNE-----VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp T---CEEEECCGGGSS---T-TCCHHHHHHHHHTTCTT-----CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred C---CEEEeChhhhcC---C-CCcHHHHHHHHHHhcCC-----CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 112211110000 0 02344788888776632 47899999998 444 458999999988777765555
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+..+ +..++. .| + +..|.+++...... . ...+.....+..++|+|+|+++.| +.
T Consensus 132 ~~~~~--p~~~~v--~~--~-~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~n~giY~~~~~~l---~~----- 186 (229)
T 1qwj_A 132 VRRHQ--FRWSEI--QK--G-VREVTEPLNLNPAK---R-------PRRQDWDGELYENGSFYFAKRHLI---EM----- 186 (229)
T ss_dssp EEECC--CEECCC--CS--S-TTCCCCBSSSBTTB---C-------CCTTTSCCEEEEEEEEEEEEHHHH---HT-----
T ss_pred eeccC--hhHhhc--cc--c-cccccccccccccc---c-------cCCCCCCceEEEeeEEEEEEHHHh---cc-----
Confidence 54332 223322 22 2 11122211100000 0 000000012567999999999887 11
Q ss_pred CCchhcccccccccccceEEEEec-ceEEecCCHHHHHHHHHhccc
Q 017030 244 ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.+..+..+..+..+ ++|.||+||+||..|+..+..
T Consensus 187 ----------~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 187 ----------GYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ----------TCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ----------ccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 11223344332554 689999999999999887643
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-18 Score=145.45 Aligned_cols=187 Identities=12% Similarity=0.174 Sum_probs=126.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+++++|+|++++..+++.+++.. ++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~ 68 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL---------DG 68 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC---------TT
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc---------CC
Confidence 45899999999999996 79999999999 99999999999999999999998876667666532 11
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-Ee-cCHHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YR-MDYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~-~d~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++..... ..|++++++.+...+.. ..+.+++++||.. .+ .++..+++. +.++++++...
T Consensus 69 ---~~~~~~~~~--------~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~ 131 (199)
T 2waw_A 69 ---LDIVLVDDA--------GLGCSSSLKSALTWVDP----TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY 131 (199)
T ss_dssp ---SEEEECCCC--------CTTCCCHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE
T ss_pred ---CEEEECCCc--------ccCHHHHHHHHHHhhhc----cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec
Confidence 122221111 25889999999888731 1478999999994 33 447888876 44554432211
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
+++ + ..-++|+++.+..+.. . ...
T Consensus 132 -----------------~g~-------~------------------------------~~P~~~~~~~l~~~~~-~-~~~ 155 (199)
T 2waw_A 132 -----------------ANG-------I------------------------------GHPFWVSRGVFGDLAE-L-HGD 155 (199)
T ss_dssp -----------------TTE-------E------------------------------EEEEEEEGGGHHHHHT-C-SST
T ss_pred -----------------CCc-------c------------------------------cCCEEEcHHHHHHHHh-c-CCC
Confidence 010 0 0113678887765542 1 111
Q ss_pred Cchhccccccccc--ccceEEEEe-cceEEecCCHHHHHHHHHhc
Q 017030 245 NDFGSEIIPASAN--EQFLKAYLF-NDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 245 ~~~~~~~l~~l~~--~~~i~~~~~-~~~~~~i~t~~~~~~a~~~~ 286 (378)
.. +..++. +.++..+.. .++|.||+||+||..++..+
T Consensus 156 ~~-----~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 156 KG-----VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp TC-----HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred HH-----HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 11 222222 245777776 46899999999999988765
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=148.75 Aligned_cols=130 Identities=23% Similarity=0.326 Sum_probs=92.6
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||+| .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++...+.+..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~~------- 68 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDYK------- 68 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTTT-------
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCCC-------
Confidence 6899999999999987 79999999999 99999999999999999999999888888888876432111
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHH-----cCCcEEE
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQ-----SGADITI 161 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~-----~~~~~ti 161 (378)
.+.++... ..|++++++.+...+ .+.+++++||. +.. .++.++++.|.+ .+.+..+
T Consensus 69 ~~~~~~~~----------~~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 131 (196)
T 3rsb_A 69 NIVVIDTS----------GKGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALA 131 (196)
T ss_dssp EEEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEE
T ss_pred CEEEEECC----------CCCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEE
Confidence 13333211 146777787776655 38999999999 334 448999999987 5666666
Q ss_pred EEeecC
Q 017030 162 SCLPMD 167 (378)
Q Consensus 162 ~~~~~~ 167 (378)
.+.+..
T Consensus 132 ~~~p~~ 137 (196)
T 3rsb_A 132 VMIPKE 137 (196)
T ss_dssp EEEETT
T ss_pred EEEEcc
Confidence 666654
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=146.66 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=89.8
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++|.+||||||.|+||. .||+|+|++|+ |||+|+++.+.++++++|+|++++..+++.+++.. ++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~ 68 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL---------DG 68 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC---------TT
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc---------CC
Confidence 45899999999999995 79999999999 99999999999999999999998876667666532 11
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADI 159 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ 159 (378)
+.++..... ..|++++++.+...+.. ..+.+++++||. +++. .+..+++. +.++++
T Consensus 69 ---~~~~~~~~~--------~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i 126 (197)
T 2wee_A 69 ---TDVVVVEDV--------ERGCAASLRVALARVHP----RATGIVLMLGDQPQVAPATLRRIIDV--GPATEI 126 (197)
T ss_dssp ---SEEEECC------------CCHHHHHHHHTTSCT----TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSE
T ss_pred ---CEEEECCCc--------ccCHHHHHHHHHHHhcc----cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCE
Confidence 223221111 25899999999877731 147899999999 4444 47888876 444443
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-18 Score=148.80 Aligned_cols=205 Identities=13% Similarity=0.089 Sum_probs=125.7
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
++.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++. +.+ +.. .+
T Consensus 25 ~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~~---~~~-~~~---------~~- 83 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPPG---AEP-PKG---------LG- 83 (236)
T ss_dssp CCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECTT---CCC-CTT---------CS-
T ss_pred ceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCHH---HHH-hhc---------CC-
Confidence 45699999999999983 3 9999999999 999999999 67899999999751 111 110 01
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.++.. . .|...+++.++..+. .+.+++++||. +++.+ +..+++.+.+.+ ..+.+.+
T Consensus 84 --v~~~~~--~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~ 142 (236)
T 2px7_A 84 --AVFLEG--G---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLP 142 (236)
T ss_dssp --CEEEEC--C---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEE
T ss_pred --cEEEeC--C---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEe
Confidence 233321 1 267888888887774 37899999997 55554 888888876654 3344444
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
..+ . .. ..+ +|++..+.++... ..+. ..++|+++.|.++++.......
T Consensus 143 ~~~--~--~~--~~~-~G~v~~~~~~~~~------------------------~~~~-~~~~f~~~~l~~~~~~~~~~g~ 190 (236)
T 2px7_A 143 VPD--T--LM--APE-GEAYGRVVPREAF------------------------RLVQ-TPQGFFTALLREAHAYARRKGL 190 (236)
T ss_dssp CCS--E--EE--EEC-SSSCEEEECGGGC------------------------EEEC-SCEEEEHHHHHHHHHHHHHHTC
T ss_pred cCC--c--EE--Eec-CCeEEecCChHhh------------------------cccc-CCeEEcHHHHHHHHHHHHhcCC
Confidence 432 1 11 124 6777766542110 1222 3567888877665543211000
Q ss_pred ch--hcccccccccccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 246 DF--GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 246 ~~--~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.+ ...++.. .+.++..+..++.|.||+||+||..|+..+..
T Consensus 191 ~~~d~~~ll~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 191 EASDDAQLVQA--LGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp CCSSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred CchhHHHHHHH--cCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 00 0112221 14578888888899999999999999877653
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-17 Score=141.31 Aligned_cols=218 Identities=17% Similarity=0.172 Sum_probs=145.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecCh-hhHHHHHHhhccCCCCcc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (378)
.++.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+..
T Consensus 6 ~~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~--------- 72 (231)
T 3q80_A 6 GEVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH--------- 72 (231)
T ss_dssp CCEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---------
T ss_pred CceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---------
Confidence 35889999999999997 4679999999999 99999999999874 899999998765 445544421
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.+.++... .+..++++.++..+... ...+.++++.||. +...+ +..+++.+.+ +.++.+.
T Consensus 73 ----~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~ 134 (231)
T 3q80_A 73 ----RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVP 134 (231)
T ss_dssp ----GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEE
T ss_pred ----CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEE
Confidence 02233211 13468888888887531 0136899999998 55555 7888887764 3556666
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
..+..+. .. ..+++|.|.+..+... -+.+.+ -++|+.+.|.+++++...
T Consensus 135 ~~p~~dt----~~--~~~~~g~v~~~~~r~~------------------------l~~~qT-Pq~F~~~~L~~a~~~~~~ 183 (231)
T 3q80_A 135 VLPLSDT----IK--AVDANGVVLGTPERAG------------------------LRAVQT-PQGFTTDLLLRSYQRGSL 183 (231)
T ss_dssp EECCSSC----EE--EECTTSBEEECCCGGG------------------------EEEECS-CEEEEHHHHHHHHHHHTC
T ss_pred EEeccCC----EE--EEcCCCcEEEecchhh------------------------eEEEcC-CcEEEHHHHHHHHHHHHh
Confidence 6666552 12 2466787776643211 133455 599999998888776432
Q ss_pred CC-Cchhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 243 TA-NDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 243 ~~-~~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
+. .....|....+. .+.++..+.-+..+..|++|+|+..|+..+
T Consensus 184 ~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 184 DLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp -----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred hcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 11 111122222111 256788777666789999999999998754
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=143.67 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=134.9
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhH-HHHHHhhccCCCCcc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASL-NRHLARAYNYGSGVT 84 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i-~~~l~~~~~~~~~~~ 84 (378)
..|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+ .+++ .
T Consensus 12 ~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~------~---- 77 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV------F---- 77 (234)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTC------C----
T ss_pred ccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHh------c----
Confidence 46899999999999997 3579999999999 99999999999988 899999998765432 2221 1
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
+.. .+.... . | .+..++++.++..+... ..+.+++++||. +++.+ +..+++.+.+.+ ..+.
T Consensus 78 ~~~-~~~~~~--g-----g----~~~~~sv~~al~~~~~~---~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~ 140 (234)
T 1vpa_A 78 HEK-VLGIVE--G-----G----DTRSQSVRSALEFLEKF---SPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATL 140 (234)
T ss_dssp CTT-EEEEEE--C-----C----SSHHHHHHHHHHHHGGG---CCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEE
T ss_pred cCC-ceEEeC--C-----C----CcHHHHHHHHHHHhhhc---CCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEE
Confidence 111 122110 0 0 13678888888777420 036788888998 55554 888988887654 3343
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
+.+..+ +....+++| + .+.++.. .+..-..++|+.+.+.++++...
T Consensus 141 ~~~~~~------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~- 186 (234)
T 1vpa_A 141 ALKNSD------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENGG- 186 (234)
T ss_dssp EEECCS------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTCC-
T ss_pred EEecCC------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhcC-
Confidence 444432 122234456 5 5544311 01112345888888876654310
Q ss_pred CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.... ...++.. .+.++..+..++.|.||+||+||..|+..+..
T Consensus 187 ~~~~-~~~~~~~--~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 187 EWAD-DTEPVQK--LGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp CCSS-SHHHHHT--TTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred CCCc-HHHHHHH--cCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 0000 0112221 14567777777789999999999999876543
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=145.01 Aligned_cols=332 Identities=14% Similarity=0.122 Sum_probs=190.0
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeec-CeeeeeeeehhhhhhcCCc-----EEEEEe-ecChhhHHHHHH-hhcc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINSGIN-----KVYILT-QYNSASLNRHLA-RAYN 78 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~-g~~pli~~~l~~l~~~gi~-----~I~iv~-~~~~~~i~~~l~-~~~~ 78 (378)
.++.+||||||.||||+ .+.||+|+||+ |+ |+|+++++++.+.|.. .++|.+ .+..+.+++|++ +...
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 37899999999999999 77999999999 99 9999999999987533 455555 566788999997 4211
Q ss_pred CCC---Ccc-cCCceEEEeccc------cCCCcCCCccccCcHHHHHHH-----HHH-hcCCCCCCCCeEEEEcCCeEEe
Q 017030 79 YGS---GVT-FGDGCVEVLAAT------QTPGEAGKRWFQGTADAVRQF-----HWL-FEDPRNKVIEDVLILSGDHLYR 142 (378)
Q Consensus 79 ~~~---~~~-~~~~~i~i~~~~------~~~~~~~~~~~~Gt~~al~~~-----~~~-i~~~~~~~~~~~lv~~gD~~~~ 142 (378)
++- ... |....+-.+... ....+.-...+.|+|+++... ++. ++. +.++++|.++|++..
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~----G~e~i~V~N~DNL~~ 225 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQ----GYRYMFVSNGDNLGA 225 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHT----TCCEEEEECTTCTTC
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhc----CCCEEEEEECCcccc
Confidence 211 111 111111111000 000000123467999998754 232 321 258999999999874
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEEC------CCCC---------EEEEEecCCccchhcccccchh
Q 017030 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN------NEGR---------VLSFSEKPKGKDLKAMAVDTTV 206 (378)
Q Consensus 143 -~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d------~~~~---------v~~~~ek~~~~~~~~~~~~~~~ 206 (378)
.|+ .++.+|.++++++++.+.+...+ ...+|++..+ .+|+ ++++.+-|...... .. .
T Consensus 226 ~~D~-~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~-~~-g--- 298 (505)
T 2oeg_A 226 TIDK-RVLAYMEKEKIDFLMEVCRRTES-DKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMES-FQ-D--- 298 (505)
T ss_dssp CCCH-HHHHHHHHHTCSEEEEEEECCTT-CCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHH-HH-C---
T ss_pred ccCH-HHHHHHHhcCCcEEEEEEEecCC-ccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhc-cc-C---
Confidence 467 89999999999999999987652 2467877662 4577 44444444332110 00 0
Q ss_pred ccccccccccCcceeeeeEEEEeHHHHHHHHhhh--C---CCC-----Cc-----h-----hcccccccccc-cceEEEE
Q 017030 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR--F---PTA-----ND-----F-----GSEIIPASANE-QFLKAYL 265 (378)
Q Consensus 207 ~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~--~---~~~-----~~-----~-----~~~~l~~l~~~-~~i~~~~ 265 (378)
.......|+...+|+-+.+.++++.. . +.. .+ . .+.++.+.+.- ....++.
T Consensus 299 --------~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~ 370 (505)
T 2oeg_A 299 --------INKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIV 370 (505)
T ss_dssp --------TTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEE
T ss_pred --------ccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEE
Confidence 01123478999999999998887762 1 110 00 0 01111111110 1233444
Q ss_pred ec-ceEEecCCHHHHHHHHHhcccCCCCcccc-C-------CCCcEEcc---------CCCCC--Cceee--Cceee-ee
Q 017030 266 FN-DYWEDIGTIRSFFEANLALTAHPPMFSFY-D-------ATKPIYTS---------RRNLP--PSKID--DSKIV-DS 322 (378)
Q Consensus 266 ~~-~~~~~i~t~~~~~~a~~~~l~~~~~~~~~-~-------~~~~i~~~---------~~i~~--~~~i~--~~~i~-~s 322 (378)
++ ..|..+.+..|++.+..++........+. . |...+.+. .++.. |+..+ ..+|+ +.
T Consensus 371 V~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~~~~~~~~~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G~~ 450 (505)
T 2oeg_A 371 VPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLV 450 (505)
T ss_dssp CCGGGCCCCSSHHHHHHHHSTTEEECTTCCEEECGGGTTCCCEEEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEESSE
T ss_pred eccceeecccCCCCHHHHHHHHHhhcCCceEEEcccccCcCCeEEEChhHcCcHHHHHHhcCCCCCccccCcEEEEEcce
Confidence 33 24788999999998888765433211111 1 11011110 11111 11111 12232 45
Q ss_pred EEecCcEEcceEEeece-EcCCCEECCCCEEeeeeeCCCC
Q 017030 323 IISHGSFITSSFIEHSV-VGIRSRINANVHLKVSPANPLC 361 (378)
Q Consensus 323 ~Ig~~~~I~~~~i~~Si-I~~~~~Ig~~~~i~~sIi~~~~ 361 (378)
+.|+|+.+.|+.+..+- =|...+|-+|+.|+|..+.+.-
T Consensus 451 ~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 451 QFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp ECCTTCEEEEEEEEECCSCSSCEECCTTCEEESCEECC--
T ss_pred EEccCcEEEEEEEEEecCCCCcEEeCCCCEEeCceechhh
Confidence 67888888765444333 3556688888888888776654
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-17 Score=141.08 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=110.8
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... +++. +
T Consensus 13 ~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~-----------~ 71 (201)
T 2e8b_A 13 KVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSFL-----------N 71 (201)
T ss_dssp SCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG-----------T
T ss_pred cCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC-----------C
Confidence 35689999999999997 79999999999 9999999999988 9999999987653 2221 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHH-HHHHHHHcCCcEEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMD-FVQNHRQSGADITISC 163 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~-~l~~h~~~~~~~ti~~ 163 (378)
+.++..... ..|++++++.+.+.+. .+.+++++||. +.+.+ +.. ++ +.++++.
T Consensus 72 ---~~~v~~~~~--------~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~- 127 (201)
T 2e8b_A 72 ---APVVLDEFE--------ESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS- 127 (201)
T ss_dssp ---CCEEECCCS--------SCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE-
T ss_pred ---ceEEecCCC--------CCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE-
Confidence 112221111 2589999999988875 48999999999 44544 455 44 1111110
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+ +|+ .....|+| |+++++..+.+.....
T Consensus 128 ---------------~~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~g 156 (201)
T 2e8b_A 128 ---------------VA-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKKG 156 (201)
T ss_dssp ---------------EE-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHTT
T ss_pred ---------------ec-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHcC
Confidence 00 110 12467999 9999775443211111
Q ss_pred CCchhcccccccccccceEEEEec--ceEE--ecCCHHHHHHHHHhc
Q 017030 244 ANDFGSEIIPASANEQFLKAYLFN--DYWE--DIGTIRSFFEANLAL 286 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~--~~~~--~i~t~~~~~~a~~~~ 286 (378)
. ..+..+++..++..+.++ +.|. |||||+||.+++..+
T Consensus 157 ~-----~~~~~~l~~~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 157 D-----YRIWALLKDVGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp C-----CCHHHHHHHHCCEEEECCGGGGGGGCCSCCC----------
T ss_pred C-----chHHHHHHHCCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 1 122333333456666663 5788 999999999886644
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=150.84 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=138.9
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceee---cCeeeeeeeehhhhhh--------cC----CcEEEEEeecChhhHH
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCIN--------SG----INKVYILTQYNSASLN 70 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi---~g~~pli~~~l~~l~~--------~g----i~~I~iv~~~~~~~i~ 70 (378)
..+|.+||||||.||||+ .+.||+|+|| .|+ |+|+++++.+.+ .| +..+++...+..+.+.
T Consensus 100 ~~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~ 175 (505)
T 1jv1_A 100 QNKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTK 175 (505)
T ss_dssp TTCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHH
T ss_pred cCceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHH
Confidence 367999999999999996 6799999999 799 999999999776 36 6666666677788899
Q ss_pred HHHHhhccCCCCcccCCc--eEEEec-----cccCCC-------cCCCccccCcHHHHHHHHH--HhcCCCCCCCCeEEE
Q 017030 71 RHLARAYNYGSGVTFGDG--CVEVLA-----ATQTPG-------EAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLI 134 (378)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~--~i~i~~-----~~~~~~-------~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv 134 (378)
+++.+.. .|+.. .+.++. ....++ ..-...+.|+|+.+..+.. .+++....+.+.|+|
T Consensus 176 ~~f~~~~------~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V 249 (505)
T 1jv1_A 176 EFFTKHK------YFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHV 249 (505)
T ss_dssp HHHHHTG------GGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEE
T ss_pred HHHHhhh------hcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEE
Confidence 9987642 22221 122111 000000 0001236799999876642 111100012489999
Q ss_pred EcCCeE-EecCHHHHHHHHHHcCCcEEEEEee-cCCCCCCcceEEEECCCCC--EEEEEecCCccchhcccccchhcccc
Q 017030 135 LSGDHL-YRMDYMDFVQNHRQSGADITISCLP-MDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLS 210 (378)
Q Consensus 135 ~~gD~~-~~~d~~~~l~~h~~~~~~~ti~~~~-~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~ 210 (378)
.++|++ ...+...++.+|.++++++++.+.+ ..+ ...+|.+..+ +|+ ++++.|+|..... .. +
T Consensus 250 ~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~-~~--~------- 316 (505)
T 1jv1_A 250 YCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRV-DGVYQVVEYSEISLATAQ-KR--S------- 316 (505)
T ss_dssp EETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEE-TTEEEEECGGGSCHHHHH-CB--C-------
T ss_pred EECCccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEE-CCeEEEEEEeeCCHHHhh-hc--c-------
Confidence 999995 7777778999999999999999886 433 5778988774 454 4555566643210 00 0
Q ss_pred ccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 211 KQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 211 ~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
+.. ....+..|+|+|+|+.++|+++.+.
T Consensus 317 ~~g-~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 317 SDG-RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp TTS-SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred ccc-ccccceeeEEEEEecHHHHHHHHHh
Confidence 000 0123678999999999999887653
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-16 Score=132.60 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=83.5
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+.+. + +
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~~----~---------~ 64 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIYQ----A---------S 64 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHHH----T---------T
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHHh----h---------c
Confidence 457899999999999996 379999999999 999999999984 68999999987653321 1 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHH
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 151 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~ 151 (378)
+ +.++...... ..|++++++.+...++ .+.+++++||. ++..+ +..+++.
T Consensus 65 ~---~~~v~~~~~~-------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 65 G---LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp S---CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred C---CeEEecCCCC-------CCCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 1 1122211110 1489999999988875 48899999999 66666 6777764
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=134.09 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=84.7
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
+|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|++++..+.+.+++. .+
T Consensus 2 ~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~----------~~- 61 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM----------DQ- 61 (197)
T ss_dssp CEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT----------TS-
T ss_pred ceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc----------CC-
Confidence 4789999999999997 49999999999 9999999999887 888888876544433321 11
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcE
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ 159 (378)
+ ++.... +..|++++++.++..+.. .+.+++++||. +++.+ +..+++.+ +.++++
T Consensus 62 --~-~v~~~~--------~~~G~~~si~~al~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 118 (197)
T 3d5n_A 62 --I-VIYNPF--------WNEGISTSLKLGLRFFKD-----YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA 118 (197)
T ss_dssp --C-EEECTT--------GGGCHHHHHHHHHHHTTT-----SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE
T ss_pred --E-EEECCC--------CCCCHHHHHHHHHHhhcc-----CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE
Confidence 2 222111 125899999999888853 37899999999 55554 77777766 444443
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=122.28 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=83.4
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+.+. .+.+.+ +
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~~-~~~~~~--------~-- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQAE-KLSSRY--------E-- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHHH-HHHTTS--------C--
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHHH-HHHHhc--------C--
Confidence 689999999999996 79999999999 9999999999886 89888864 33343 332211 1
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti 161 (378)
+.++..... -.|...+++.++..+ . +.+ +++||+ +.+.+ +..+++.+.+.++++.+
T Consensus 60 -~~~v~d~~~--------~~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 -AEFIWDLHK--------GVGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp -SCEECCTTC--------CCSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred -CeEEecCCC--------CCChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 122322211 137889999998887 3 678 999999 55666 78888877655665443
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-15 Score=138.51 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=125.1
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+.+++. +
T Consensus 2 mki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~-------~--- 66 (371)
T 1w55_A 2 SEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK-------N--- 66 (371)
T ss_dssp CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS-------S---
T ss_pred CccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC-------C---
Confidence 46899999999999997 4579999999999 999999999998 58999999998 4443433221 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~ 163 (378)
+.++. .. .|..++++.++..+. .+.+++++||. +.+.+ +..+++.+.+. +.++.+
T Consensus 67 ----v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~ 123 (371)
T 1w55_A 67 ----YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPA 123 (371)
T ss_dssp ----SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEE
T ss_pred ----CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEE
Confidence 22221 11 367789998887764 47899999998 55554 78888776544 344444
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceee-eeEEEEeHHHHHHHHhhhCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Giy~~~~~~l~~~l~~~~~ 242 (378)
.+..+. +.. + .+.+... .+.. ..-+.|+.+.+.++++...
T Consensus 124 ~~~~d~-------vk~-----v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~- 164 (371)
T 1w55_A 124 LKVADT-------TLF-----D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL- 164 (371)
T ss_dssp ECCCSC-------EEE-----T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-
T ss_pred EEeecC-------eee-----e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-
Confidence 444321 000 0 0111100 0111 1235688887766654311
Q ss_pred CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHH
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~ 283 (378)
...+ ...++.. .+.++..+..++.|.||+||+||..|+
T Consensus 165 ~~td-~~~ll~~--~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 165 EFTD-DSTAIAA--MGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp CCSS-HHHHHHT--TTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred cccC-HHHHHHh--CCCcEEEEECCccccCCCCHHHHHHHH
Confidence 0000 0112211 245677777777899999999999887
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-14 Score=134.50 Aligned_cols=214 Identities=16% Similarity=0.186 Sum_probs=137.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhhc--------C------CcEEEEEeecChhhH
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------G------INKVYILTQYNSASL 69 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~~--------g------i~~I~iv~~~~~~~i 69 (378)
.++.+||||||.||||. .+.||+|+||+ |+ |+|+++++.+.+. | +..+++..++..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 57999999999999995 77899999999 99 9999999999876 6 777777778888889
Q ss_pred HHHHHhhccCCCCcccCCceEEE-----eccccCCC--------cCCCccccCcHHHHHHHHH--HhcCCCCCCCCeEEE
Q 017030 70 NRHLARAYNYGSGVTFGDGCVEV-----LAATQTPG--------EAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLI 134 (378)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~i~i-----~~~~~~~~--------~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv 134 (378)
++++++...++-.. ..+.+ ++....++ ..-...+.|+|+.+..... .+++....+.+.+.+
T Consensus 178 ~~~~~~~~~fgl~~----~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v 253 (486)
T 2yqc_A 178 ESFFIENNYFGLNS----HQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHM 253 (486)
T ss_dssp HHHHHHTGGGGSCG----GGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred HHHHhhccccCCCc----ceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEE
Confidence 99997642122111 11211 11100000 0001136799988765532 121111123578888
Q ss_pred EcCCeEEe--cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEEC-CCC--CEEEEEecCCccchhcccccchhccc
Q 017030 135 LSGDHLYR--MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NEG--RVLSFSEKPKGKDLKAMAVDTTVLGL 209 (378)
Q Consensus 135 ~~gD~~~~--~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d-~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~ 209 (378)
.+.|.+.. .| ..++.+|.++++++++.+.+...+ ....|.+... .+| +|+++.|+|...... ...+
T Consensus 254 ~~vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~-~~~~------ 324 (486)
T 2yqc_A 254 YCVDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANK-KDPQ------ 324 (486)
T ss_dssp EETTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHC-EETT------
T ss_pred ECCCCceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhc-cccc------
Confidence 99998444 34 357889999999999988876432 3567877653 145 478888887532110 0000
Q ss_pred cccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 210 SKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 210 ~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+. ....+..|+++|+|+.++|++++++
T Consensus 325 ~~~--~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 325 DSS--KLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEE--EESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccc--cccccceeEEEEEEeHHHHHHHHHh
Confidence 000 0123578999999999999875554
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-15 Score=138.92 Aligned_cols=103 Identities=10% Similarity=0.080 Sum_probs=60.7
Q ss_pred CeEEEEcCCeEEec--CHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECC--CCCEEEEEecCCccchhcccccch
Q 017030 130 EDVLILSGDHLYRM--DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EGRVLSFSEKPKGKDLKAMAVDTT 205 (378)
Q Consensus 130 ~~~lv~~gD~~~~~--d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~--~~~v~~~~ek~~~~~~~~~~~~~~ 205 (378)
..=|+-.+|.++.. |+.+++++|. +|+.. .+....+|+..+++ ++++ .|.|||+....
T Consensus 11 ~~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~-------- 72 (374)
T 2iu8_A 11 SSGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH-------- 72 (374)
T ss_dssp ----------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH--------
T ss_pred ccCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh--------
Confidence 34567889999986 7999999885 35553 22356788888764 4566 99999974321
Q ss_pred hccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhcccccccccccceEEEEecceEEe
Q 017030 206 VLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWED 272 (378)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~ 272 (378)
..+.++|+|+|+++++.++. .+ .+.+| ++...+.++|....+|++
T Consensus 73 ------------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~ 117 (374)
T 2iu8_A 73 ------------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFI 117 (374)
T ss_dssp ------------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTS
T ss_pred ------------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhc
Confidence 14578999999999874221 12 45666 666555555544455554
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=128.02 Aligned_cols=211 Identities=11% Similarity=0.092 Sum_probs=139.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceee---cCeeeeeeeehhhhhh-------------cCCcEEEEEeecChhhH
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCIN-------------SGINKVYILTQYNSASL 69 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi---~g~~pli~~~l~~l~~-------------~gi~~I~iv~~~~~~~i 69 (378)
..++.+|+||||.||||+ .+.||+|+|| .|+ |+++++++.+.+ .++.-+++...+..+.+
T Consensus 33 ~gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t 108 (405)
T 3oc9_A 33 QGKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEI 108 (405)
T ss_dssp TTCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHH
T ss_pred cCceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHH
Confidence 367899999999999996 6799999999 899 999999988753 46665555557888889
Q ss_pred HHHHHhhccCCCCcccCCceEEEe-----ccccCCC-------cCCCccccCcHHHHHHHHH--HhcCCCCCCCCeEEEE
Q 017030 70 NRHLARAYNYGSGVTFGDGCVEVL-----AATQTPG-------EAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLIL 135 (378)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~i~i~-----~~~~~~~-------~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~ 135 (378)
++++.++..++-.. ..+.+. +....++ ..-...+.|+|+....... .+++....+.+.+.+.
T Consensus 109 ~~~f~~~~~fGl~~----~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~ 184 (405)
T 3oc9_A 109 NNYFKEHQYFGLSS----EQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAH 184 (405)
T ss_dssp HHHHHHTGGGGSCT----TSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEE
T ss_pred HHHHHhCcccCCCc----cceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 99997643222110 011111 1000000 0001235688887765432 1221111224799999
Q ss_pred cCCe-EEecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE-CCCCCEEEEEecCCccchhcccccchhccccccc
Q 017030 136 SGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQE 213 (378)
Q Consensus 136 ~gD~-~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~ 213 (378)
++|. +.......++.+|.++++++++-+.+...+ ....|.+.. |...+|+++.|.|.. . .....++.
T Consensus 185 nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg~~~vvEysei~~e-~-e~~~~~g~-------- 253 (405)
T 3oc9_A 185 NVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQERIKVVEYTELTDE-L-NKQLSNGE-------- 253 (405)
T ss_dssp CTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEEEECGGGCCTT-T-TCBCTTSC--------
T ss_pred eCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECCeeEEEEEeeCCHH-H-hhcCCCCc--------
Confidence 9999 888888889999999999999999887652 256787764 433478888887765 1 11111110
Q ss_pred cccCcceeeeeEEEEeHHHHHHHH
Q 017030 214 AEEKPYIASMGVYLFKKEILLNLL 237 (378)
Q Consensus 214 ~~~~~~~~~~Giy~~~~~~l~~~l 237 (378)
...+..|+++|+|+.++|+++.
T Consensus 254 --l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 254 --FIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp --BSSCEEEEEEEEEEHHHHHHHT
T ss_pred --eeeccceeEeeecCHHHHHHhh
Confidence 1235678999999999998776
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-13 Score=117.63 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=73.7
Q ss_pred cccceEEEEecce----EEecCCHHHHHHHHHhcccCC-----------CCcc------ccCCCCcEEccCCCCCCcee-
Q 017030 257 NEQFLKAYLFNDY----WEDIGTIRSFFEANLALTAHP-----------PMFS------FYDATKPIYTSRRNLPPSKI- 314 (378)
Q Consensus 257 ~~~~i~~~~~~~~----~~~i~t~~~~~~a~~~~l~~~-----------~~~~------~~~~~~~i~~~~~i~~~~~i- 314 (378)
...+++++...+| |.|+++ |+++++.++... +... .+.+.+.+.+++.|++++.|
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~ 113 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIM 113 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEEC
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEEC
Confidence 4456666655555 888877 888888776431 1111 22333444445555555555
Q ss_pred eCcee-eeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEee---------eeeCCCCeEeeeeee-eeeeE
Q 017030 315 DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKV---------SPANPLCRRIWKCSS-LCSVI 374 (378)
Q Consensus 315 ~~~~i-~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~-~~~~~ 374 (378)
.++.| .++.||+||.|+ ++.|. +|+||++|+|++++.|.+ ++|+++|.|+.+|.+ .+++|
T Consensus 114 ~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~I 186 (240)
T 3r8y_A 114 MNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTV 186 (240)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEE
Confidence 45555 467777777777 67664 788888888888888876 777777777777776 44443
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-13 Score=128.91 Aligned_cols=215 Identities=11% Similarity=-0.004 Sum_probs=128.7
Q ss_pred ccCcHHHHHHHHHHhcCCCCCCCCeEEEEc----CCeEEecCHHHHHHHHHHc--C---------CcEEEEEeecCCCCC
Q 017030 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILS----GDHLYRMDYMDFVQNHRQS--G---------ADITISCLPMDDSRA 171 (378)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~----gD~~~~~d~~~~l~~h~~~--~---------~~~ti~~~~~~~~~~ 171 (378)
+++++++++.+.+.+ .+++|+. +|.....++.+++..|.++ + ...|+.+..+.+.-.
T Consensus 123 pL~~a~~i~~~d~~~--------~~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li 194 (496)
T 3c8v_A 123 PLHDDEVITIKDSFL--------NKTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNSVV 194 (496)
T ss_dssp ECSSCCEEEEESCEE--------ESCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESCEE
T ss_pred chhHhhhHHhhhhcC--------CceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHHHH
Confidence 467777754432111 1236777 5776666666666666652 2 234455555444212
Q ss_pred CcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhccc
Q 017030 172 SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEI 251 (378)
Q Consensus 172 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~ 251 (378)
..++.+. .|++..+.++|...-. .+......+|.|.++.+++++...
T Consensus 195 ~~~~~~~---~g~i~~~~~~pg~~~i-------------------~~~~~lnf~Y~f~~~~L~~~l~~~----------- 241 (496)
T 3c8v_A 195 RYFSYVQ---TGELVGKCVEPGQIWI-------------------KSGDELEFHYSFDKAILDKYISQE----------- 241 (496)
T ss_dssp CTTCEEE---SSEEESCEECTTEEEE-------------------ECTTSEEEEEECCHHHHTTTCBCC-----------
T ss_pred HHHhhhc---CCceEEeeecCCceec-------------------ccccccceEEEcCHHHHHHHHhhc-----------
Confidence 4566652 3667777666652100 112235569999998876432111
Q ss_pred ccccccccceEEEEecceEEec--CCHHHHHHHHHhccc----CCCCccccCCCCcEEccCCCCCCcee-eCceeeeeEE
Q 017030 252 IPASANEQFLKAYLFNDYWEDI--GTIRSFFEANLALTA----HPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSII 324 (378)
Q Consensus 252 l~~l~~~~~i~~~~~~~~~~~i--~t~~~~~~a~~~~l~----~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~I 324 (378)
.+.. ..+.|.|+ ..++++.++...... ......++++.+.+...+.|++++.| .++.|.+++|
T Consensus 242 -----~~~n-----~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~I 311 (496)
T 3c8v_A 242 -----AGSC-----PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWM 311 (496)
T ss_dssp -----TTSC-----CBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEE
T ss_pred -----cCcc-----ccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEe
Confidence 0111 12333333 344555544322111 11122456666666777788888888 5788888888
Q ss_pred ecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 325 g~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
|++|.|+ ++.|.+|+||++|.||+++.|.+++|+++|.|+.+|.+.+.
T Consensus 312 G~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~ 360 (496)
T 3c8v_A 312 GKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGS 360 (496)
T ss_dssp CTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECC
T ss_pred cCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCC
Confidence 9999998 88888888888888888888888888888888888887766
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.98 E-value=9e-10 Score=105.34 Aligned_cols=69 Identities=14% Similarity=-0.052 Sum_probs=65.1
Q ss_pred ccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
.++.|+++|.|.++.|.+|+||++|.|+ ++.|.+|+||++|+||+||.|.+|+|++++.|+.++.+.++
T Consensus 323 ~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 323 VSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp ESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEESSC
T ss_pred cCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEECCCCEEeCC
Confidence 4888999999988899999999999999 99999999999999999999999999999999999988754
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-08 Score=93.79 Aligned_cols=338 Identities=12% Similarity=0.103 Sum_probs=174.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeec-Ceeeeeeeehhhhhhc----CCc-EEEEEee-cChhhHHHHHHhhcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GIN-KVYILTQ-YNSASLNRHLARAYN 78 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~-g~~pli~~~l~~l~~~----gi~-~I~iv~~-~~~~~i~~~l~~~~~ 78 (378)
..++.+|+||||.||||+ ...||.++|+. |+ ++++..++.+.+. |.. ..+|.++ ...+..+++++++..
T Consensus 125 l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~ 200 (528)
T 3r3i_A 125 LNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNH 200 (528)
T ss_dssp CTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTT
T ss_pred cCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCc
Confidence 567899999999999997 77899999997 78 9999999888764 532 4456664 555678888876543
Q ss_pred CCCCccc-CCceEE-EeccccCC-Cc------CC--CccccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEE-ecC
Q 017030 79 YGSGVTF-GDGCVE-VLAATQTP-GE------AG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY-RMD 144 (378)
Q Consensus 79 ~~~~~~~-~~~~i~-i~~~~~~~-~~------~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~-~~d 144 (378)
++....+ ....+- +.....-. .. .+ .-.|.|.|+...... ..+++....+.+.+.+.+.|.+. ..|
T Consensus 201 fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vD 280 (528)
T 3r3i_A 201 CRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVD 280 (528)
T ss_dssp SSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCC
T ss_pred cCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccC
Confidence 3321110 000000 00000000 00 00 112346554333221 22322222346899999999954 344
Q ss_pred HHHHHHHHHHc----CCcEEEEEeecCCCCCCcceEEEECCCCC--EEEEEecCCccchhcccccchhccccccccccCc
Q 017030 145 YMDFVQNHRQS----GADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 218 (378)
Q Consensus 145 ~~~~l~~h~~~----~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (378)
. .++.++..+ ++++.+-+.+...+ ...-|.+.. .+|+ ++++.|-|...... . .. ...-
T Consensus 281 p-~~Lg~~~~~~~~~~~d~~~kVv~Kt~~-dek~Gvl~~-~dGk~~vvEyseip~e~~~~---~---------~g-~~~f 344 (528)
T 3r3i_A 281 L-YILNHLMNPPNGKRCEFVMEVTNKTRA-DVKGGTLTQ-YEGKLRLVEIAQVPKAHVDE---F---------KS-VSKF 344 (528)
T ss_dssp H-HHHHHHSSCSSSCCCSEEEEECCCCTT-CCSSCEEEC-SSSSCEEECTTSSCGGGTTT---S---------SC-SSSC
T ss_pred H-HHHHHHHhcccccCCcEEEEEeEcccc-CCcccEEEE-ECCeEEEEEecCCChhHhhc---c---------CC-cccC
Confidence 3 356666666 78877766654332 223455543 3454 44444444322110 0 00 0122
Q ss_pred ceeeeeEEEEeHHHHHHHHhhhCCCCCch--------h------cccccccccc-cceEEEEec-ceEEecCCHHHHHHH
Q 017030 219 YIASMGVYLFKKEILLNLLRWRFPTANDF--------G------SEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEA 282 (378)
Q Consensus 219 ~~~~~Giy~~~~~~l~~~l~~~~~~~~~~--------~------~~~l~~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a 282 (378)
...|+...+|+-+.++++++.......-+ . +.++-.++.. .+..++..+ ..|..+.+..|++.+
T Consensus 345 ~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~PvKn~sdLll~ 424 (528)
T 3r3i_A 345 KIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLV 424 (528)
T ss_dssp CCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBCCSHHHHHHH
T ss_pred CeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhccCcEEEEEehHHcccccchHHHHHH
Confidence 45789999999999998887631111000 0 0111111110 112233332 348999999999877
Q ss_pred HHhcccCCCCccccCCCC--cEEccCCC---------------CCCcee--eCceee-eeEEecCcEEcceEEeeceEcC
Q 017030 283 NLALTAHPPMFSFYDATK--PIYTSRRN---------------LPPSKI--DDSKIV-DSIISHGSFITSSFIEHSVVGI 342 (378)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~--~i~~~~~i---------------~~~~~i--~~~~i~-~s~Ig~~~~I~~~~i~~SiI~~ 342 (378)
..++-.-..+.-...+.. ..-+...+ ..|..+ +..+|. +...|+|+++.|+.+.-+-=|+
T Consensus 425 ~Sdly~l~~g~l~~~~~r~~~~~P~v~L~~~~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~ 504 (528)
T 3r3i_A 425 MSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGD 504 (528)
T ss_dssp HSTTSEEETTEEECCSSCSSCCCCEEEECTTSCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTC
T ss_pred hcceeEeeCCeEEecccccCCCCCEEEeCcccCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCC
Confidence 655422111100001110 00011111 122222 233333 6778999998864333222256
Q ss_pred CCEECCCCEEeeeeeCCCCeE
Q 017030 343 RSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 343 ~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
..+|-+|+.++|.+|..+..|
T Consensus 505 ~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 505 RIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp EEECCTTCEEEEEEEC-----
T ss_pred ceecCCCCEEeccEEeccccc
Confidence 678999999999998876655
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-09 Score=87.51 Aligned_cols=77 Identities=13% Similarity=-0.029 Sum_probs=60.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEEe-----eceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i~-----~SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++.+.+...+.|++++.| .++.|.. +.||++|.|+ ++.|. +++||++|.|++++.|.+++|++++.|
T Consensus 20 ~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~I 99 (173)
T 1xhd_A 20 FIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALI 99 (173)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEE
T ss_pred EECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEE
Confidence 45556666666777777777 5677764 7889999998 78887 788999999999898888888888888
Q ss_pred eeeeeeee
Q 017030 364 IWKCSSLC 371 (378)
Q Consensus 364 ~~~~~~~~ 371 (378)
+.+|.+..
T Consensus 100 g~~~~i~~ 107 (173)
T 1xhd_A 100 GMGSIILD 107 (173)
T ss_dssp CTTCEECT
T ss_pred cCCCEEcC
Confidence 88887653
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-09 Score=87.58 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=53.3
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEEe------eceEcCCCEECCCCEEeeeeeCCCCe
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE------HSVVGIRSRINANVHLKVSPANPLCR 362 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i~------~SiI~~~~~Ig~~~~i~~sIi~~~~~ 362 (378)
.+.+.+.+..++.|++++.| .++.|. ++.||++|.|+ ++.|. +++||++|.||+++.|.+++|+++|.
T Consensus 41 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~ 120 (191)
T 3ixc_A 41 FIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAF 120 (191)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCE
T ss_pred EECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCE
Confidence 34445555555666666666 456664 33778888887 77776 78888888888888888777777777
Q ss_pred Eeeeeeeee
Q 017030 363 RIWKCSSLC 371 (378)
Q Consensus 363 ~~~~~~~~~ 371 (378)
|+.+|.+..
T Consensus 121 Ig~~~~I~~ 129 (191)
T 3ixc_A 121 VGMGSIVMD 129 (191)
T ss_dssp ECTTCEECT
T ss_pred ECCCCEEeC
Confidence 777776653
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=85.37 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=57.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEEe-----eceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i~-----~SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++.+.+..++.+++++.| .++.+.. +.||++|.|+ ++.|. +++||+++.|++++.|.+++|++++.|
T Consensus 18 ~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~I 97 (173)
T 1v3w_A 18 FVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVII 97 (173)
T ss_dssp EECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEE
T ss_pred EECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEE
Confidence 45556666666677777777 5666654 7888888888 78887 588888888888888888888888888
Q ss_pred eeeeeee
Q 017030 364 IWKCSSL 370 (378)
Q Consensus 364 ~~~~~~~ 370 (378)
+.+|.+.
T Consensus 98 g~~~~i~ 104 (173)
T 1v3w_A 98 GISSVIL 104 (173)
T ss_dssp CTTCEEC
T ss_pred CCCCEEe
Confidence 8777754
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=85.79 Aligned_cols=76 Identities=14% Similarity=0.036 Sum_probs=56.3
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEE------------eeceEcCCCEECCCCEEeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI------------EHSVVGIRSRINANVHLKVSP 356 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i------------~~SiI~~~~~Ig~~~~i~~sI 356 (378)
++++.+.+..++.|++++.| .++.|. ++.||+||.|+ ++.| .+++||++|.||.++.|.+++
T Consensus 23 ~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~ 102 (187)
T 3r3r_A 23 MIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCT 102 (187)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCE
T ss_pred EECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcE
Confidence 44555666666677777777 466665 24788888888 7777 678888888888888888888
Q ss_pred eCCCCeEeeeeeee
Q 017030 357 ANPLCRRIWKCSSL 370 (378)
Q Consensus 357 i~~~~~~~~~~~~~ 370 (378)
|++++.|+.+|.+.
T Consensus 103 Ig~~~~Ig~~~~I~ 116 (187)
T 3r3r_A 103 IGNRVLVGMGSIVL 116 (187)
T ss_dssp ECSSEEECTTCEEC
T ss_pred ECCCCEECCCCEEC
Confidence 88888888777774
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-08 Score=83.67 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=64.1
Q ss_pred eEEecCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCC--CCcee-eCceee-eeEEecCcEEc-ceEEe-eceEc
Q 017030 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNL--PPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVG 341 (378)
Q Consensus 269 ~~~~i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~--~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~ 341 (378)
++.-++++....+..+.+.+.. ....++++.+.+.+++.++ +++.| .++.|. ++.||+||.|+ ++.|. ++.||
T Consensus 50 ~~iaig~~~~r~~~~~~l~~~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig 129 (194)
T 3bfp_A 50 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG 129 (194)
T ss_dssp EEECCCCHHHHHHHHHHHHTTTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEEC
Confidence 4567888877777766665432 1224566667777777777 77777 455553 56677777776 66664 56666
Q ss_pred CCCEECCCCEEee-eeeCCCCeEeeeeee
Q 017030 342 IRSRINANVHLKV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 342 ~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~ 369 (378)
++|+|++++.|.+ ++|++++.|+.+|.+
T Consensus 130 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i 158 (194)
T 3bfp_A 130 EFSHVSVGAKCAGNVKIGKNCFLGINSCV 158 (194)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CCCEECCCCEECCCcEECCCCEEcCCCEE
Confidence 6666666666666 666666666665554
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-08 Score=84.02 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=32.5
Q ss_pred eEEecCcEEc-ceEEee-ceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~ 371 (378)
+.||++|.|+ ++.|.. ++||++|.||.++.|.+++|++++.|+.++.+.+
T Consensus 112 ~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V~~ 163 (213)
T 3kwd_A 112 VWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQD 163 (213)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEES
T ss_pred eEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEECC
Confidence 5666666666 566655 6666666666666666666666666666666643
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-06 Score=83.08 Aligned_cols=334 Identities=10% Similarity=0.040 Sum_probs=177.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceee-cCeeeeeeeehhhhhh----cCCc-EEEEEeec-ChhhHHHHHHhhccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI-GGAYRLIDVPMSNCIN----SGIN-KVYILTQY-NSASLNRHLARAYNY 79 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi-~g~~pli~~~l~~l~~----~gi~-~I~iv~~~-~~~~i~~~l~~~~~~ 79 (378)
.++.+|+||||.||||+ ...||.++|+ .|+ ++++..++++.+ .|.. -.+|.++. ..+..+++++++..+
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 47888999999999997 7789999999 667 899998887765 3432 45666754 456788888764322
Q ss_pred CC---C-cccCCceEEEeccccC-----CCcCC-CccccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEEecCHHH
Q 017030 80 GS---G-VTFGDGCVEVLAATQT-----PGEAG-KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (378)
Q Consensus 80 ~~---~-~~~~~~~i~i~~~~~~-----~~~~~-~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~~~d~~~ 147 (378)
+- . .-|....+-.+..... +.... .-.+.|.|+...... ..+++....+.+.+.+.+.|.+...---.
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 21 1 1111111111111000 00000 122346665443321 22222222346899999999955432346
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcceEEEEC---------CCCC--EEEEEecCCccchhcccccchhcccccccccc
Q 017030 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKIN---------NEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEE 216 (378)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d---------~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (378)
++.++.++++++.+-+.+...+ ...-|.+... .+|+ ++++.|-|..... .+.. ..
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~-dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~-~f~~------------~~ 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTES-DKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDED-SFQN------------IA 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTT-CCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHH-HHTC------------TT
T ss_pred HHHHHHhcCCCEEEEEEECCCC-CCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHh-hhcC------------CC
Confidence 7888889999998888776542 2334543331 2454 4444454433211 0000 01
Q ss_pred CcceeeeeEEEEeHHHHHHHHhhhC--CCCC-------------ch-----hccccccccc-ccceEEEEec-ceEEecC
Q 017030 217 KPYIASMGVYLFKKEILLNLLRWRF--PTAN-------------DF-----GSEIIPASAN-EQFLKAYLFN-DYWEDIG 274 (378)
Q Consensus 217 ~~~~~~~Giy~~~~~~l~~~l~~~~--~~~~-------------~~-----~~~~l~~l~~-~~~i~~~~~~-~~~~~i~ 274 (378)
.....+++..++.-..+.++++... .... +. .+.++-+++. -.+..++..+ ..|..+.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvK 376 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVK 376 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCS
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhccccc
Confidence 1234589999999988877877631 1000 00 0111111111 1234444443 4588899
Q ss_pred CHHHHHHHHHhcccCCCCcccc-CCC-CcEEccCCCCC-----------------Ccee--eCceee-eeEEecCcEEcc
Q 017030 275 TIRSFFEANLALTAHPPMFSFY-DAT-KPIYTSRRNLP-----------------PSKI--DDSKIV-DSIISHGSFITS 332 (378)
Q Consensus 275 t~~~~~~a~~~~l~~~~~~~~~-~~~-~~i~~~~~i~~-----------------~~~i--~~~~i~-~s~Ig~~~~I~~ 332 (378)
+..|++.+..++-.-..+..+. .+. ....+...+++ |+.+ ...+|. +...|+|+++.|
T Consensus 377 n~sdLl~~~Sdly~l~~~~~l~~~~~~~~~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G 456 (484)
T 3gue_A 377 TCSDLLALRSDAYQVTEDQRLVLCEERNGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRG 456 (484)
T ss_dssp SHHHHHHHHSTTEEECTTSCEEECGGGTTCCCEEEECTTTSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEE
T ss_pred cchHHHHHhhhceeccCCceEEeccccCCCCCeEEECchhcCcHHHHHHhcCCCCCChhhCCEEEEecceEECCCcEEEE
Confidence 9999988876653222110110 000 00001111111 2222 122332 667888888886
Q ss_pred eEEeeceEcCCCEECCCCEEeeeeeC
Q 017030 333 SFIEHSVVGIRSRINANVHLKVSPAN 358 (378)
Q Consensus 333 ~~i~~SiI~~~~~Ig~~~~i~~sIi~ 358 (378)
+.+..+-=|...+|-+|+.++|.++.
T Consensus 457 ~v~i~~~~g~~~~ip~g~~l~~~~~~ 482 (484)
T 3gue_A 457 NVVIKNLKEEPLIIGSGRVLDNEVVV 482 (484)
T ss_dssp EEEEEECSSSCEEECTTCEEESCEEE
T ss_pred EEEEEcCCCCeeecCCCCEecceecC
Confidence 54443333566788888888887764
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=91.26 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=19.4
Q ss_pred CcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCC
Q 017030 300 KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIR 343 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~ 343 (378)
..+.+.+.|++++.| +++.|.||+|++||.|+ ++.|.+|+|+++
T Consensus 78 ~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~ 123 (334)
T 2pig_A 78 ARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE 123 (334)
T ss_dssp CEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESS
T ss_pred cEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCC
Confidence 333333333334443 34444455555555554 444444443333
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-08 Score=90.60 Aligned_cols=46 Identities=11% Similarity=-0.113 Sum_probs=24.1
Q ss_pred eEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCcee
Q 017030 269 YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI 314 (378)
Q Consensus 269 ~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i 314 (378)
.|.-+.+|...+.....++...+....+++.+.+.+++.++++++|
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I 123 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYI 123 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEE
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEE
Confidence 3556777776555544454443222445555555555555544444
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=83.92 Aligned_cols=76 Identities=13% Similarity=0.043 Sum_probs=52.2
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEEeec------------eEcCCCEECCCCEEeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEHS------------VVGIRSRINANVHLKVSP 356 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i~~S------------iI~~~~~Ig~~~~i~~sI 356 (378)
++.+.+.+..++.|++++.| .++.|. ++.||++|.|+ ++.|..+ +||++|.||.++.|.+++
T Consensus 27 ~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~ 106 (189)
T 3r1w_A 27 FVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCT 106 (189)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCE
T ss_pred EECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcE
Confidence 34455555566666666666 456664 24778888887 7777655 778888777777777777
Q ss_pred eCCCCeEeeeeeee
Q 017030 357 ANPLCRRIWKCSSL 370 (378)
Q Consensus 357 i~~~~~~~~~~~~~ 370 (378)
|++++.|+.+|.+.
T Consensus 107 Ig~~~~Ig~~~~i~ 120 (189)
T 3r1w_A 107 IGNRVLIGMKSMIM 120 (189)
T ss_dssp ECSSEEECTTCEEC
T ss_pred ECCCcEECCCCEEc
Confidence 77777777777764
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.7e-08 Score=88.42 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=54.2
Q ss_pred EecCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEE-eeceEcCCCE
Q 017030 271 EDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSR 345 (378)
Q Consensus 271 ~~i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i-~~SiI~~~~~ 345 (378)
.-+.+|...+.....++... .....+++.+.+.+++.++++++| .++.|. ++.||+||.|+ ++.| .++.||++|+
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 44677776555444444332 233456666666666666666666 344443 45555555555 4555 5555555555
Q ss_pred ECCCCEE-eeeeeCCCCeEeeeeee
Q 017030 346 INANVHL-KVSPANPLCRRIWKCSS 369 (378)
Q Consensus 346 Ig~~~~i-~~sIi~~~~~~~~~~~~ 369 (378)
|++++.| .+++|++++.|+.+|.+
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~~I 178 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGTVV 178 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTCEE
T ss_pred ECCCcEECCCCEECCccEEcCCcEE
Confidence 5555555 34555555555555544
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-08 Score=86.85 Aligned_cols=74 Identities=14% Similarity=0.018 Sum_probs=57.7
Q ss_pred CcEEccCCCCCCceee-Cceee-eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEE-eeeeeCCCCeEeee
Q 017030 300 KPIYTSRRNLPPSKID-DSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHL-KVSPANPLCRRIWK 366 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i~-~~~i~-~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~ 366 (378)
+.|...+.|+++|.|+ ++.|. +|+||++|.|+ ++.+.+ ++|+++|.||.+|.| .++.|+++++|+.+
T Consensus 116 s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~g 195 (240)
T 3r8y_A 116 ATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAG 195 (240)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCC
Confidence 3333445555555553 55554 78999999999 888887 999999999999999 88999999999998
Q ss_pred eeeeeee
Q 017030 367 CSSLCSV 373 (378)
Q Consensus 367 ~~~~~~~ 373 (378)
+.+..+|
T Consensus 196 svV~~~v 202 (240)
T 3r8y_A 196 AVVTEDV 202 (240)
T ss_dssp CEECSCB
T ss_pred CEECCCc
Confidence 8886543
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5e-08 Score=94.13 Aligned_cols=80 Identities=18% Similarity=0.060 Sum_probs=67.9
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
.+.+.+.+.+++.|++++.| .++.|.++.||+||.|+ ++.|.+++||++|.||+++.|. +++|+++++|+++|.+..
T Consensus 273 ~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~ 352 (456)
T 2v0h_A 273 EIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKK 352 (456)
T ss_dssp EECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEES
T ss_pred EEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEec
Confidence 45556666677788888888 68889999999999999 8999999999999999999998 699999999999888765
Q ss_pred eeE
Q 017030 372 SVI 374 (378)
Q Consensus 372 ~~~ 374 (378)
+++
T Consensus 353 ~~i 355 (456)
T 2v0h_A 353 STV 355 (456)
T ss_dssp CEE
T ss_pred cEE
Confidence 443
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.1e-08 Score=89.37 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=55.0
Q ss_pred cCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
.+.+++.++| +++.|. ++.||+||+|+ ++.|.||+|+++|+|+++++|.+++|++++.|.+++.+...+
T Consensus 65 ~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s 136 (334)
T 2pig_A 65 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQS 136 (334)
T ss_dssp TCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSC
T ss_pred CeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCE
Confidence 4455555555 455554 68899999999 899999999999999999999999998888887777655443
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-08 Score=85.51 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=33.5
Q ss_pred cCCCCcEEc--cCCCCCCcee-eCceee-eeEEecCcEEc-ceEE----eeceEcCCCEECCCCEE
Q 017030 296 YDATKPIYT--SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI----EHSVVGIRSRINANVHL 352 (378)
Q Consensus 296 ~~~~~~i~~--~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i----~~SiI~~~~~Ig~~~~i 352 (378)
+.+.+.+.. +..|++++.| .++.|. ++.||++|.|+ ++.| .+++||++|.|+++|.|
T Consensus 41 I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 41 ISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp EBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred ECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 344444444 4555566666 455554 56666666666 5666 33666666666666666
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=6.3e-08 Score=86.63 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=22.7
Q ss_pred CCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEE
Q 017030 299 TKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL 352 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i 352 (378)
.+.+.+.+.|++++.| ..+.|. ++.||++|.|+ ++.|. ++.||++|+|+++|.|
T Consensus 7 ~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~I 64 (270)
T 1j2z_A 7 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 64 (270)
T ss_dssp TCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEE
Confidence 3333333334444433 233332 44444444444 44444 4444444444444444
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=88.95 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=49.9
Q ss_pred EEecCCHHHHHHHHHhcccCCC-CccccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEcceEEeeceEcCCCEE
Q 017030 270 WEDIGTIRSFFEANLALTAHPP-MFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRI 346 (378)
Q Consensus 270 ~~~i~t~~~~~~a~~~~l~~~~-~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~~~~i~~SiI~~~~~I 346 (378)
+.-+.+|...+.....++...+ ....+++.+.+.+++.|+++++| .++.|. ++.||+||.|+ .+|+|+++++|
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~----~~~~Ig~~v~I 170 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIG----AHCVIGARSVI 170 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC----TTCEECTTCEE
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEC----CCCEECCCCEE
Confidence 4556777766655555554432 23356677777777777777776 344443 45555555554 12344444444
Q ss_pred CCCCEEe-eeeeCCCCeEeeeeee
Q 017030 347 NANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 347 g~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
|++|.|. +++|+.+++|+++|.|
T Consensus 171 G~~~~I~~~~~I~~~~~IG~~v~I 194 (372)
T 3pmo_A 171 GEGGWLAPRVTLYHDVTIGARVSI 194 (372)
T ss_dssp CTTCEECTTCEECTTEEECTTCEE
T ss_pred CCCcccCCCcEEEeeeEECceeec
Confidence 4444444 3444444444444443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=81.48 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=37.8
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-----eeEEecCcEEc-ceEEee---------------ceEcCCCEECCCCEEee
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIEH---------------SVVGIRSRINANVHLKV 354 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-----~s~Ig~~~~I~-~~~i~~---------------SiI~~~~~Ig~~~~i~~ 354 (378)
.+.+.+..++.|++++.| .++.|. ++.||++|.|+ ++.|.. ++||++|.|+.++.|.+
T Consensus 49 ~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~ 128 (213)
T 3kwd_A 49 HSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHG 128 (213)
T ss_dssp CTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEE
T ss_pred CCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcC
Confidence 334444444444444444 344442 24555555555 455543 45555555555555555
Q ss_pred -eeeCCCCeEeeeeeeeee
Q 017030 355 -SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 355 -sIi~~~~~~~~~~~~~~~ 372 (378)
++|+++|.|+.+|.+..+
T Consensus 129 ~v~Ig~~v~IG~~a~I~~~ 147 (213)
T 3kwd_A 129 PAYIGDGCFIGFRSTVFNA 147 (213)
T ss_dssp EEEECTTCEECTTCEEEEE
T ss_pred CCEECCCCEECCCCEEeCc
Confidence 555555555555555443
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=83.62 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=23.1
Q ss_pred eEEecCcEEc-ceEEee-ceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 322 SIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
++||++|.|+ ++.|.+ ++||++|.||.++.|.++.|++++.|+.+|.+
T Consensus 141 v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 141 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCCCEECCCCEE
Confidence 4444444444 444444 44455555555554444444444444444444
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.2e-08 Score=91.91 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee---------eeeC--------
Q 017030 298 ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV---------SPAN-------- 358 (378)
Q Consensus 298 ~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~---------sIi~-------- 358 (378)
+.+.+..++.|+.++.| .++.|.+|+||++|.|+ ++.+.+++||++|.||.++.|.+ +.++
T Consensus 273 ~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 352 (401)
T 2ggo_A 273 PNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR 352 (401)
T ss_dssp SSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSC
T ss_pred CCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecc
Confidence 34444455566666666 56788889999999999 89999999999999999999873 3333
Q ss_pred --CCCeEeeeeeeee
Q 017030 359 --PLCRRIWKCSSLC 371 (378)
Q Consensus 359 --~~~~~~~~~~~~~ 371 (378)
.+++|+++|.+-.
T Consensus 353 ~~~~v~Ig~~~~Ig~ 367 (401)
T 2ggo_A 353 RKLGAFIGGHVRTGI 367 (401)
T ss_dssp SSCCCEECTTCEECT
T ss_pred cccCcEECCCeEECC
Confidence 3789999988863
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=81.69 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=46.8
Q ss_pred ecCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEE
Q 017030 272 DIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRI 346 (378)
Q Consensus 272 ~i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~I 346 (378)
-++++....+....+.... ....++++.+.+...+.+++++.| .++.|. ++.||+||.|+ ++.|. +|+||++|+|
T Consensus 77 AIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i 156 (220)
T 4ea9_A 77 AIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHL 156 (220)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 3556555555555444322 112244555555555555555555 334442 44555555555 44443 3555555555
Q ss_pred CCCCEEee-eeeCCCCeEeeeeee
Q 017030 347 NANVHLKV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 347 g~~~~i~~-sIi~~~~~~~~~~~~ 369 (378)
++++.|.+ ++|++++.|+.+|.+
T Consensus 157 ~~~~~i~~~v~Ig~~~~Ig~~~~i 180 (220)
T 4ea9_A 157 GPASALAGGVSVGERAFLGVGARV 180 (220)
T ss_dssp CTTCEECSSCEECTTCEECTTCEE
T ss_pred CCCCEEcCCCEECCCCEECCCCEE
Confidence 55555544 444444444444443
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=77.68 Aligned_cols=65 Identities=5% Similarity=-0.122 Sum_probs=43.1
Q ss_pred CCCCCCcee-eCceee-----eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 306 RRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~-----~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
..|++++.| .++.|. +++||++|.|+ ++.|.+++||++|.||.++.|. ++.|++++.|+.++.+.
T Consensus 52 v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~ 124 (173)
T 1xhd_A 52 TIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVS 124 (173)
T ss_dssp EEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEEC
Confidence 455566666 456665 67777777777 6777777777777777777665 36666666666666554
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=79.28 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=39.0
Q ss_pred CCCCCcee-eCceee------eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 307 RNLPPSKI-DDSKIV------DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~------~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
.|++++.| +++.|. +++||++|.|+ ++.+.+++||++|.||.++.|.+ +.|++++.|+.++.+.
T Consensus 74 ~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~ 146 (191)
T 3ixc_A 74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLT 146 (191)
T ss_dssp EECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEEC
Confidence 44555555 445554 56666666666 66666666666666666666665 5566666665555554
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=79.84 Aligned_cols=76 Identities=11% Similarity=-0.105 Sum_probs=60.9
Q ss_pred ccCCCCcEEccC---CCCCCcee-eCcee------------eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eee
Q 017030 295 FYDATKPIYTSR---RNLPPSKI-DDSKI------------VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSP 356 (378)
Q Consensus 295 ~~~~~~~i~~~~---~i~~~~~i-~~~~i------------~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sI 356 (378)
.+.+.+.+..+. .|+.++.| .++.| .+++||++|.|+ ++.|.+++||++|.||.++.|. ++.
T Consensus 41 ~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~ 120 (187)
T 3r3r_A 41 GIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAI 120 (187)
T ss_dssp EECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCE
T ss_pred EECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCCCEECCCCEECCCCE
Confidence 444555555543 77788888 56777 689999999999 8999999999999999999994 588
Q ss_pred eCCCCeEeeeeeee
Q 017030 357 ANPLCRRIWKCSSL 370 (378)
Q Consensus 357 i~~~~~~~~~~~~~ 370 (378)
|++++.|+.++.+.
T Consensus 121 Ig~~~~Ig~~s~V~ 134 (187)
T 3r3r_A 121 IEDDVMIGAGSLVP 134 (187)
T ss_dssp ECSSEEECTTCEEC
T ss_pred ECCCCEECCCCEEC
Confidence 88888888877766
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-07 Score=85.84 Aligned_cols=75 Identities=7% Similarity=-0.075 Sum_probs=41.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEe-----eeeeCCCCeEee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK-----VSPANPLCRRIW 365 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~-----~sIi~~~~~~~~ 365 (378)
.++|.+.|.+++.|++++.| ..+.|. ++.||+||.|+ ++.|. ++.||++|+|++++.|. +++|++++.|+.
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~ 88 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECT
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECC
Confidence 44555556656666666655 344443 55555555555 55554 55555555555555554 355555555555
Q ss_pred eeee
Q 017030 366 KCSS 369 (378)
Q Consensus 366 ~~~~ 369 (378)
+|++
T Consensus 89 ~a~I 92 (305)
T 3t57_A 89 HAVV 92 (305)
T ss_dssp TCEE
T ss_pred ccEe
Confidence 5544
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-07 Score=83.17 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=30.4
Q ss_pred eeEEecCcEEc-ceEE--------------eeceEcCCCEECCCCEEee--------eeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFI--------------EHSVVGIRSRINANVHLKV--------SPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i--------------~~SiI~~~~~Ig~~~~i~~--------sIi~~~~~~~~~~~~ 369 (378)
++.||++|.|+ ++.| .+++||++|.|++++.|.. ++|++++.|+.+|++
T Consensus 52 ~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I 123 (266)
T 3r0s_A 52 DTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHI 123 (266)
T ss_dssp SCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEE
T ss_pred CcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceE
Confidence 56666666666 6666 4677777777777777753 555555555544444
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=83.62 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=9.7
Q ss_pred eceEcCCCEECCCCEEe
Q 017030 337 HSVVGIRSRINANVHLK 353 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~ 353 (378)
+++||+++.|+++|.|.
T Consensus 100 ~v~IG~~~~Ig~~~~I~ 116 (283)
T 4eqy_A 100 RLVIGDRNTIREFTTIH 116 (283)
T ss_dssp EEEECSSCEECTTEEEE
T ss_pred eEEECCCcccCcceeEc
Confidence 45555555555555554
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-07 Score=80.49 Aligned_cols=78 Identities=6% Similarity=-0.003 Sum_probs=56.8
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee-----eEEecCcEEc-ceEEe------------------------eceEcCC
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD-----SIISHGSFIT-SSFIE------------------------HSVVGIR 343 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~-----s~Ig~~~~I~-~~~i~------------------------~SiI~~~ 343 (378)
++.+.+.+..++.|+++++| .++.|.. ++||++|.|+ ++.|. +++||++
T Consensus 67 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~ 146 (247)
T 1qre_A 67 YIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNN 146 (247)
T ss_dssp EECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTT
T ss_pred EECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCC
Confidence 34444555555666666666 4566653 3788888888 77775 3788999
Q ss_pred CEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 344 SRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 344 ~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
|.||.+|.|.+ ++|+++|.|+.+|.+...
T Consensus 147 v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v 176 (247)
T 1qre_A 147 VSLAHQSQVHGPAAVGDDTFIGMQAFVFKS 176 (247)
T ss_dssp CEECTTCEEEEEEEECTTCEECTTCEEEEE
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEece
Confidence 99999999988 889999988888887663
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=90.05 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=60.1
Q ss_pred cCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
...++++++| .++.+. ++.||++|.|+ ++.|.+++||++|.|+++|.|.+|+|++++.|+.+|.+.+++|..
T Consensus 273 ~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd 347 (496)
T 3c8v_A 273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGD 347 (496)
T ss_dssp ---CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEE
T ss_pred CcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECC
Confidence 4556777777 455554 88999999999 899999999999999999999999999999999999998877653
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=79.47 Aligned_cols=78 Identities=10% Similarity=-0.141 Sum_probs=60.4
Q ss_pred ccCCCCcEEccCCCCCCcee-eCcee----eeeEEecCcEEc-ceEE--------------------------eeceEcC
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKI----VDSIISHGSFIT-SSFI--------------------------EHSVVGI 342 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i----~~s~Ig~~~~I~-~~~i--------------------------~~SiI~~ 342 (378)
.+.+.+.+...+.|+.++.| .++.| .+++||++|.|+ ++.| .+++||+
T Consensus 60 ~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~ 139 (205)
T 3vbi_A 60 RIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKK 139 (205)
T ss_dssp EECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECT
T ss_pred EECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECC
Confidence 55566777778888888888 57777 348999999999 8888 4578888
Q ss_pred CCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 343 RSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 343 ~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
+|.||.+|.|. ++.|++++.|+.++.+..+
T Consensus 140 ~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~ 170 (205)
T 3vbi_A 140 HVIIGAHSIIFPNVVIGEGVAVGAMSMVKES 170 (205)
T ss_dssp TCEECTTCEECSSCEECTTCEECTTCEECSC
T ss_pred CCEECCCCEEcCCCEECCCCEEcCCCEECCc
Confidence 88888888876 5777777777777776554
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-07 Score=76.17 Aligned_cols=65 Identities=12% Similarity=-0.078 Sum_probs=47.7
Q ss_pred CCCCCCcee-eCceee-----eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 306 RRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~-----~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
+.|++++.| .++.|. +++||++|.|+ ++.|.+++||++|.||.++.|.+ +.|++++.|+.++.+.
T Consensus 50 ~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~ 122 (173)
T 1v3w_A 50 IYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVP 122 (173)
T ss_dssp EEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEEC
T ss_pred EEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 556666666 566665 57888888888 78888888888888888887654 7777777777777665
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-07 Score=81.74 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=27.1
Q ss_pred eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEee--------eeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKV--------SPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~~--------sIi~~~~~~~~~~~~ 369 (378)
++.||++|.|+ ++.|. +++||+++.|++++.|.. ++|++++.|+.+|++
T Consensus 53 ~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I 123 (262)
T 2qia_A 53 HTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHI 123 (262)
T ss_dssp EEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred CcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEE
Confidence 45555555555 55553 456666666666666642 555555555554444
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-07 Score=88.88 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=43.7
Q ss_pred ccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 304 TSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
+.+.+++++.| .++.| .++.||+||.|+ ++.|.+++||++|+|++++.|.+++|++++.|+.+|.+.
T Consensus 267 ~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~ 336 (459)
T 4fce_A 267 GELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLR 336 (459)
T ss_dssp EEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEEC
T ss_pred CcEEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEEC
Confidence 34445555555 34554 356677777777 677777777777777777777777777777777776665
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-07 Score=81.41 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=49.6
Q ss_pred cCCCCCCcee-eCceee----eeEEecCcEEc-ceEEeec--------------------eEcCCCEECCCCEEe-eeee
Q 017030 305 SRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEHS--------------------VVGIRSRINANVHLK-VSPA 357 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i~~S--------------------iI~~~~~Ig~~~~i~-~sIi 357 (378)
...|++++.| .++.|. ++.||++|.|+ ++.|.++ +||++|.||.+|.|. ++.|
T Consensus 105 ~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~I 184 (252)
T 3jqy_B 105 KVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSV 184 (252)
T ss_dssp EEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEE
T ss_pred EEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEE
Confidence 3456666666 466666 78888888888 7888876 788888888887665 4777
Q ss_pred CCCCeEeeeeeeeee
Q 017030 358 NPLCRRIWKCSSLCS 372 (378)
Q Consensus 358 ~~~~~~~~~~~~~~~ 372 (378)
+++++|+.++.+..+
T Consensus 185 G~~~~IgagsvV~~~ 199 (252)
T 3jqy_B 185 GSGSVIGYGSIVTKD 199 (252)
T ss_dssp CTTCEECTTCEECSC
T ss_pred CCCCEECCCCEECcc
Confidence 777777777766544
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.8e-07 Score=78.02 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=6.1
Q ss_pred eeeCCCCeEeeeeee
Q 017030 355 SPANPLCRRIWKCSS 369 (378)
Q Consensus 355 sIi~~~~~~~~~~~~ 369 (378)
++|++++.|+.+|.+
T Consensus 103 ~~Ig~~v~IG~~~~I 117 (192)
T 3mqg_A 103 TIVRQGATLGANCTV 117 (192)
T ss_dssp EEECTTCEECTTCEE
T ss_pred cEECCCcEECCCCEE
Confidence 344444444444433
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-07 Score=81.71 Aligned_cols=75 Identities=12% Similarity=-0.008 Sum_probs=60.6
Q ss_pred CCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...|.+.+.|++++.|+ ++.|. +++||+||.|+ ++.|.+ ++||+||.||.||.|.. +.|+++++|
T Consensus 164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~I 243 (287)
T 3mc4_A 164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKI 243 (287)
T ss_dssp CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEE
Confidence 45677778888888884 55553 68888888888 777766 69999999999999985 999999999
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+.++.+..+|
T Consensus 244 GagsvV~kdV 253 (287)
T 3mc4_A 244 AAGSVVLKSV 253 (287)
T ss_dssp CTTCEECSCB
T ss_pred CCCCEEcccc
Confidence 9999887665
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-07 Score=77.32 Aligned_cols=70 Identities=7% Similarity=-0.089 Sum_probs=48.7
Q ss_pred ccCCCCCCcee-eCceee---eeEEecCcEEc-ceEEee-------------------ceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEH-------------------SVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~-------------------SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.++.|+++++| .++.+. +..||+||.|+ ++.|.+ ++||++|.||.+|.|. ++.|+
T Consensus 77 ~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG 156 (190)
T 3hjj_A 77 YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIG 156 (190)
T ss_dssp TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEEC
T ss_pred CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEEC
Confidence 35666677777 456664 45788888888 777733 4788888888887776 57777
Q ss_pred CCCeEeeeeeeeeee
Q 017030 359 PLCRRIWKCSSLCSV 373 (378)
Q Consensus 359 ~~~~~~~~~~~~~~~ 373 (378)
++++|+.++.+..+|
T Consensus 157 ~~~vIgagsvV~~dv 171 (190)
T 3hjj_A 157 DNAVIASGAVVTKDV 171 (190)
T ss_dssp TTCEECTTCEECSCB
T ss_pred CCCEECCCCEECccc
Confidence 777777777665543
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.2e-07 Score=81.44 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=22.4
Q ss_pred eEEecCcEEc-ceEE-eeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
++||++|.|+ ++.| .+++||+++.||+++.|. ++.|++++.|+.+|.+
T Consensus 71 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i 121 (273)
T 3fs8_A 71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDI 121 (273)
T ss_dssp EEECTTCEECTTCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEE
T ss_pred eEECCCCEECCCCEEeCCCEECCCCEECCceEECCCCEECCCCEECcccee
Confidence 4444444444 4444 245555555555555553 4445444444444433
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-07 Score=88.76 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=62.9
Q ss_pred ccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCC-------------------CEECCCCEEeeeeeCCCCeE
Q 017030 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIR-------------------SRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~-------------------~~Ig~~~~i~~sIi~~~~~~ 363 (378)
.++.|+++|+|.++.+.+|+||++|.|| ++.|.+|++..+ ++||+|+.|.+++|+++|.|
T Consensus 329 ~~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~I 408 (451)
T 1yp2_A 329 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI 408 (451)
T ss_dssp EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred eCeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEE
Confidence 4678888999966888899999999999 999999999888 99999999999999999999
Q ss_pred eeeeeeeee
Q 017030 364 IWKCSSLCS 372 (378)
Q Consensus 364 ~~~~~~~~~ 372 (378)
+.+|.+...
T Consensus 409 G~~~~i~~~ 417 (451)
T 1yp2_A 409 GDNVKIINK 417 (451)
T ss_dssp CTTCEECCS
T ss_pred CCCCEEeCC
Confidence 999998753
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-07 Score=76.66 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=56.9
Q ss_pred ccCCCCcEEc---cCCCCCCcee-eCceeeee------------EEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eee
Q 017030 295 FYDATKPIYT---SRRNLPPSKI-DDSKIVDS------------IISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSP 356 (378)
Q Consensus 295 ~~~~~~~i~~---~~~i~~~~~i-~~~~i~~s------------~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sI 356 (378)
.+.+.+.+.. ...|+.++.| .++.|..+ +||++|.|+ ++.|.+++||++|.||.++.|. ++.
T Consensus 45 ~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v~ 124 (189)
T 3r1w_A 45 SVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAI 124 (189)
T ss_dssp EECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSSEEECTTCEECTTCE
T ss_pred EECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCCcEECCCCEEcCCCE
Confidence 4445555553 3367777777 56666554 999999999 8999999999999999999884 577
Q ss_pred eCCCCeEeeeeeee
Q 017030 357 ANPLCRRIWKCSSL 370 (378)
Q Consensus 357 i~~~~~~~~~~~~~ 370 (378)
|++++.|+.++.+.
T Consensus 125 Ig~~~~Ig~~s~V~ 138 (189)
T 3r1w_A 125 VEDEVIVAAGATVS 138 (189)
T ss_dssp ECSSCEECTTCEEC
T ss_pred ECCCCEEccCCEEC
Confidence 77777777776665
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.4e-07 Score=79.91 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=31.4
Q ss_pred eeEEecCcEEc-ceEE-------------eeceEcCCCEECCCCEEe--------eeeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFI-------------EHSVVGIRSRINANVHLK--------VSPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-------------~~SiI~~~~~Ig~~~~i~--------~sIi~~~~~~~~~~~~ 369 (378)
++.||++|.|+ ++.| .+++||+++.|++++.|. +++|++++.++.+|++
T Consensus 55 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I 125 (265)
T 4e6u_A 55 FTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHI 125 (265)
T ss_dssp SEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred CcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEE
Confidence 46666666666 5666 467777777777777776 3566655555555544
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.1e-07 Score=87.35 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=57.7
Q ss_pred cCCCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
++.|+.++.|.++.+.++.||++|.|+ ++.|. +++||++++||+++.|.+++|+++++|+..|.+..+.|
T Consensus 309 ~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~I 380 (468)
T 1hm9_A 309 DSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEV 380 (468)
T ss_dssp SCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEE
T ss_pred ccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccc
Confidence 444555666666677788999999999 88888 89999999999999999999999999999888765555
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.37 E-value=8.3e-07 Score=74.57 Aligned_cols=69 Identities=13% Similarity=-0.033 Sum_probs=46.7
Q ss_pred ccCCCCCCcee-eCcee---eeeEEecCcEEc-ceEEe-------------------eceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKI---VDSIISHGSFIT-SSFIE-------------------HSVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i---~~s~Ig~~~~I~-~~~i~-------------------~SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.+..|+++++| .++.+ .+..||++|.|+ ++.|. .+.||++|.||.+|.|. ++.|+
T Consensus 73 ~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG 152 (185)
T 2p2o_A 73 YNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIG 152 (185)
T ss_dssp TTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEEC
T ss_pred CCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEEC
Confidence 45566677777 45666 356788888888 77774 46777777777777776 56666
Q ss_pred CCCeEeeeeeeeee
Q 017030 359 PLCRRIWKCSSLCS 372 (378)
Q Consensus 359 ~~~~~~~~~~~~~~ 372 (378)
+++.|+.++.+..+
T Consensus 153 ~~~vIgagsvV~~~ 166 (185)
T 2p2o_A 153 DNAVIASGAVVTKD 166 (185)
T ss_dssp TTCEECTTCEECSC
T ss_pred CCCEECCCCEECCC
Confidence 66666666665443
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.2e-07 Score=74.87 Aligned_cols=68 Identities=10% Similarity=-0.101 Sum_probs=42.2
Q ss_pred cCCCCCCcee-eCceeee---eEEecCcEEc-ceEE-------------------eeceEcCCCEECCCCEEe-eeeeCC
Q 017030 305 SRRNLPPSKI-DDSKIVD---SIISHGSFIT-SSFI-------------------EHSVVGIRSRINANVHLK-VSPANP 359 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~---s~Ig~~~~I~-~~~i-------------------~~SiI~~~~~Ig~~~~i~-~sIi~~ 359 (378)
+..|+++++| .++.+.+ ..||++|.|+ ++.| ..++||++|.||.||.|. ++.|++
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 155 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD 155 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECS
T ss_pred CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECC
Confidence 4556666666 4555543 3677888877 6766 356677777777776664 355555
Q ss_pred CCeEeeeeeeeee
Q 017030 360 LCRRIWKCSSLCS 372 (378)
Q Consensus 360 ~~~~~~~~~~~~~ 372 (378)
++.|+.++.+..+
T Consensus 156 ~~vIgagsvV~~d 168 (188)
T 3srt_A 156 NVVIGAGSVVTKD 168 (188)
T ss_dssp SEEECTTCEECSC
T ss_pred CCEECCCCEECcc
Confidence 5555555555444
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.6e-07 Score=79.17 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=72.3
Q ss_pred cceEEecCCHHHHHHHHHhcccCCCCcc-------ccCCCCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceE
Q 017030 267 NDYWEDIGTIRSFFEANLALTAHPPMFS-------FYDATKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSF 334 (378)
Q Consensus 267 ~~~~~~i~t~~~~~~a~~~~l~~~~~~~-------~~~~~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~ 334 (378)
+||| ....|..++..+........ .......|++.+.|++++.|+ ++.|. +++||+||.|+ ++.
T Consensus 102 ~g~~----al~~yR~ah~l~~~~~~~l~~~l~~~~~~~~g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvt 177 (267)
T 1ssq_A 102 KGFH----AIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVT 177 (267)
T ss_dssp HHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCE
T ss_pred chHH----HHHHHHHHHHHHHhHHHHHHHHHHHhceeccceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcE
Confidence 5666 44566666655543321110 111245567778888888884 45664 78899999998 788
Q ss_pred Eee---------ceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeeee
Q 017030 335 IEH---------SVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 335 i~~---------SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~~ 373 (378)
|.+ ++||++|.||.|+.|. ++.||++++|+.++.+..+|
T Consensus 178 ig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~dV 226 (267)
T 1ssq_A 178 LGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPV 226 (267)
T ss_dssp EECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB
T ss_pred ECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccCC
Confidence 876 5899999999999987 48899999999998877654
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.2e-07 Score=78.58 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=33.8
Q ss_pred Cceee-eeEEecCcEEc-ceEE--------------eeceEcCCCEECCCCEEe-------eeeeCCCCeEeeeee
Q 017030 316 DSKIV-DSIISHGSFIT-SSFI--------------EHSVVGIRSRINANVHLK-------VSPANPLCRRIWKCS 368 (378)
Q Consensus 316 ~~~i~-~s~Ig~~~~I~-~~~i--------------~~SiI~~~~~Ig~~~~i~-------~sIi~~~~~~~~~~~ 368 (378)
++.|. ++.||++|.|+ ++.| .+++||+++.|++++.|. .++|++++.|..+|+
T Consensus 42 ~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~ 117 (259)
T 3hsq_A 42 HVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSH 117 (259)
T ss_dssp TCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCE
T ss_pred CcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcE
Confidence 44444 36777777777 6666 567788888888888887 455555444443333
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=8e-07 Score=75.35 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=31.4
Q ss_pred cCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEEe-----------------eceEcCCCEECCCCEE
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----------------HSVVGIRSRINANVHL 352 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i~-----------------~SiI~~~~~Ig~~~~i 352 (378)
+.+++.+..++.|+++|.| .++.|. +..||+||.|+ ++.|. +++||++++|+.++.+
T Consensus 21 I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 100 (194)
T 3tv0_A 21 VCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYS 100 (194)
T ss_dssp ECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEE
T ss_pred EcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeE
Confidence 3344444445555555555 344443 34666666666 56553 2456666666655555
Q ss_pred ee
Q 017030 353 KV 354 (378)
Q Consensus 353 ~~ 354 (378)
.+
T Consensus 101 ~~ 102 (194)
T 3tv0_A 101 QA 102 (194)
T ss_dssp CC
T ss_pred ee
Confidence 43
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.33 E-value=8.4e-07 Score=75.21 Aligned_cols=78 Identities=9% Similarity=-0.071 Sum_probs=54.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEee-ceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEH-SVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
.+.+.+.+..++.|++++.| .++.+. ++.||++|.|+ ++.|.+ +.||++|.||.++.|. ++.|++++.|+.++.+
T Consensus 97 ~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv 176 (194)
T 3bfp_A 97 LIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL 176 (194)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred EEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEE
Confidence 33444555556666666666 466664 78888888888 777766 8888888888888774 3667777777777665
Q ss_pred eee
Q 017030 370 LCS 372 (378)
Q Consensus 370 ~~~ 372 (378)
..+
T Consensus 177 ~~~ 179 (194)
T 3bfp_A 177 VKN 179 (194)
T ss_dssp CSC
T ss_pred ccc
Confidence 543
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-07 Score=75.35 Aligned_cols=69 Identities=14% Similarity=-0.013 Sum_probs=43.3
Q ss_pred ccCCCCCCcee-eCceeee---eEEecCcEEc-ceEEee-------------------ceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKIVD---SIISHGSFIT-SSFIEH-------------------SVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~~---s~Ig~~~~I~-~~~i~~-------------------SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.++.|+++++| .++.|.+ ..||+||.|+ ++.|.+ ++||++|.||.||.|. ++.|+
T Consensus 75 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG 154 (195)
T 3nz2_A 75 KTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIG 154 (195)
T ss_dssp TTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEEC
T ss_pred CCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEEC
Confidence 35556666666 3555532 3788888888 776644 4677777777776663 46666
Q ss_pred CCCeEeeeeeeeee
Q 017030 359 PLCRRIWKCSSLCS 372 (378)
Q Consensus 359 ~~~~~~~~~~~~~~ 372 (378)
+++.|+.++.+..+
T Consensus 155 ~~~vIgagsvV~~d 168 (195)
T 3nz2_A 155 ARSVVAANSVVNQD 168 (195)
T ss_dssp TTCEECTTCEECSC
T ss_pred CCCEECCCCEEccc
Confidence 66666666655444
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-07 Score=79.25 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=29.0
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEE--------------eeeeeCCCCeEeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL--------------KVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i--------------~~sIi~~~~~~~~~~~~~~ 371 (378)
++.||+||.|+ ++.|. ++.||++|+|++++.| .+++|++++.|+++|.+..
T Consensus 34 ~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~ 100 (266)
T 3r0s_A 34 DAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINS 100 (266)
T ss_dssp TCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEEC
T ss_pred CCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecC
Confidence 44555555555 45444 4666666666666666 3566666666666665543
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=74.84 Aligned_cols=68 Identities=9% Similarity=-0.081 Sum_probs=38.9
Q ss_pred ccCCCCCCcee-eCceeee---eEEecCcEEc-ceEEee-------------------ceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKIVD---SIISHGSFIT-SSFIEH-------------------SVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~~---s~Ig~~~~I~-~~~i~~-------------------SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.++.|+++++| .++.|.+ ..||++|.|+ ++.|.+ .+||++|.||.+|.|. ++.|+
T Consensus 73 ~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG 152 (199)
T 3ftt_A 73 WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIG 152 (199)
T ss_dssp TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEEC
T ss_pred CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEEC
Confidence 34556666666 4555532 4777777777 666632 2466666666666554 35555
Q ss_pred CCCeEeeeeeeee
Q 017030 359 PLCRRIWKCSSLC 371 (378)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (378)
+++.|+.++.+..
T Consensus 153 ~~~vIgagsvV~~ 165 (199)
T 3ftt_A 153 EGSVIGAGSVVTK 165 (199)
T ss_dssp TTCEECTTCEECS
T ss_pred CCCEECCCCEECc
Confidence 5555555554443
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.3e-07 Score=79.01 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=37.6
Q ss_pred CCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEE-------------eeceEcCCCEECCCCEEe
Q 017030 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-------------EHSVVGIRSRINANVHLK 353 (378)
Q Consensus 298 ~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i-------------~~SiI~~~~~Ig~~~~i~ 353 (378)
+.+.|.+++.|+++++| .++.|. ++.||++|.|+ ++.| .+++||++++|++++.|.
T Consensus 24 ~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~ 95 (270)
T 1j2z_A 24 EFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMIN 95 (270)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEEC
T ss_pred CCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEc
Confidence 33444445555555555 456666 78888888888 7777 567777777777777776
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.5e-07 Score=80.06 Aligned_cols=74 Identities=14% Similarity=-0.042 Sum_probs=49.4
Q ss_pred CcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEe------------------eceEcCCCEECCCCEEe-ee
Q 017030 300 KPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE------------------HSVVGIRSRINANVHLK-VS 355 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~------------------~SiI~~~~~Ig~~~~i~-~s 355 (378)
..|++.+.|++++.|+ ++.|. +++||+||.|+ ++.|- +++||++|.||.||.|. ++
T Consensus 191 v~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~gv 270 (310)
T 3f1x_A 191 IDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRV 270 (310)
T ss_dssp CEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEESSC
T ss_pred cEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECCCc
Confidence 3455556666666661 33332 34455555554 44332 22799999999999998 79
Q ss_pred eeCCCCeEeeeeeeeeee
Q 017030 356 PANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 356 Ii~~~~~~~~~~~~~~~~ 373 (378)
.||++++|+.++.+..+|
T Consensus 271 ~IGd~a~IGagsvV~~dV 288 (310)
T 3f1x_A 271 TIGKGATVGGNIWVTENV 288 (310)
T ss_dssp EECTTCEECSSCEECSCB
T ss_pred EECCCCEECCCCEECCcc
Confidence 999999999998887665
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.31 E-value=9.3e-07 Score=78.92 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=70.5
Q ss_pred cceEEecCCHHHHHHHHHhcccCCCCcc-------ccCCCCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceE
Q 017030 267 NDYWEDIGTIRSFFEANLALTAHPPMFS-------FYDATKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSF 334 (378)
Q Consensus 267 ~~~~~~i~t~~~~~~a~~~~l~~~~~~~-------~~~~~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~ 334 (378)
+|||. ...|..+...+........ .......|.+.+.|++++.|+ ++.|. +++||+||.|+ ++.
T Consensus 122 ~G~~a----l~~yR~ah~l~~~~r~~l~~~l~~~~~~~~g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvt 197 (289)
T 1t3d_A 122 KGFHA----LQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVT 197 (289)
T ss_dssp HHHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCE
T ss_pred ccHHH----HHHHHHHHHHHHcChHHHHHHHHHhceeccceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcE
Confidence 66666 5566666655543321110 111234566777788888874 55664 68888888888 777
Q ss_pred Eee---------ceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeee
Q 017030 335 IEH---------SVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 335 i~~---------SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~ 373 (378)
|.+ ++||++|.||.||.|.+ +.|+++++|+.++.+..+|
T Consensus 198 Lg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dV 246 (289)
T 1t3d_A 198 LGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPV 246 (289)
T ss_dssp EECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB
T ss_pred ECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccCC
Confidence 765 68999999999998874 7889999998888876554
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.1e-07 Score=82.60 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=35.1
Q ss_pred ccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEE--------------------eeceEcCCCEECCCCEEe-----ee
Q 017030 304 TSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI--------------------EHSVVGIRSRINANVHLK-----VS 355 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i--------------------~~SiI~~~~~Ig~~~~i~-----~s 355 (378)
.++.|++++.| .++.| .++.||++|.|+ ++.| -+++||++|.||.++.|. ++
T Consensus 144 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~ 223 (341)
T 3eh0_A 144 KNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDT 223 (341)
T ss_dssp TTCEECTTCEECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCE
T ss_pred CCCEECCCcEECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCce
Confidence 33333344444 34444 356666666666 5555 246677777777777773 44
Q ss_pred eeCCCCeEeeeeee
Q 017030 356 PANPLCRRIWKCSS 369 (378)
Q Consensus 356 Ii~~~~~~~~~~~~ 369 (378)
+|+++++|+.+|.+
T Consensus 224 ~Ig~~~~I~~~v~I 237 (341)
T 3eh0_A 224 IIGNGVIIDNQCQI 237 (341)
T ss_dssp EECTTCEECTTCEE
T ss_pred EeccceEECCCCEE
Confidence 55544444444433
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.5e-07 Score=78.45 Aligned_cols=65 Identities=22% Similarity=0.123 Sum_probs=52.8
Q ss_pred CCCCCCcee-eCcee---eeeEEecCcEEc-ceEEe----eceEcCCCEECCCCEEeee--------------------e
Q 017030 306 RRNLPPSKI-DDSKI---VDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKVS--------------------P 356 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i---~~s~Ig~~~~I~-~~~i~----~SiI~~~~~Ig~~~~i~~s--------------------I 356 (378)
..|++++.| +++.+ .++.||++|.|+ ++.|. ++.||++|.||++|.|.++ +
T Consensus 86 v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~ 165 (252)
T 3jqy_B 86 VRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDII 165 (252)
T ss_dssp EEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEE
T ss_pred EEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeE
Confidence 345666666 45555 268899999999 89998 8999999999999999885 8
Q ss_pred eCCCCeEeeeeeee
Q 017030 357 ANPLCRRIWKCSSL 370 (378)
Q Consensus 357 i~~~~~~~~~~~~~ 370 (378)
|+++|.|+.+|.+.
T Consensus 166 Igd~v~IG~~a~I~ 179 (252)
T 3jqy_B 166 ISSYVWVGRNVSIM 179 (252)
T ss_dssp ECSSCEECSSEEEC
T ss_pred EecCcEECCCCEEC
Confidence 88888888888664
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=80.43 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=65.0
Q ss_pred eEEEEecceEEecCC--HHHHHHHHHhccc-CC----------CCcc---------ccCCCCcEEccCCCCCCcee-eC-
Q 017030 261 LKAYLFNDYWEDIGT--IRSFFEANLALTA-HP----------PMFS---------FYDATKPIYTSRRNLPPSKI-DD- 316 (378)
Q Consensus 261 i~~~~~~~~~~~i~t--~~~~~~a~~~~l~-~~----------~~~~---------~~~~~~~i~~~~~i~~~~~i-~~- 316 (378)
++++....+|.+.+. |++|......+.. .. +... .+.+.+.|...+.|++++.| .+
T Consensus 163 ~~g~l~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~ 242 (387)
T 2rij_A 163 AFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGA 242 (387)
T ss_dssp HHHHSCCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSS
T ss_pred hhccCceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCe
Confidence 444445678999998 7888888887763 21 1110 11122222223333333333 11
Q ss_pred cee-----------------eeeEEecCcEEc-ceE----Eee-----ceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 317 SKI-----------------VDSIISHGSFIT-SSF----IEH-----SVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 317 ~~i-----------------~~s~Ig~~~~I~-~~~----i~~-----SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+.| .+++||++|.|+ ++. +.+ ++||++|.||.|+. .++.|+++|.|+.++.+
T Consensus 243 a~Ig~nv~vIG~~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv-~GV~IGdgavIGAGsVV 321 (387)
T 2rij_A 243 SYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV-TGIPLGDNCIVDAGIAV 321 (387)
T ss_dssp CEECTTCEESSCCEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE-ECSCBCTTCEECTTCEE
T ss_pred eEECCCcEEECCEEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc-CCcEECCCCEECCCCEE
Confidence 111 135666677776 553 333 67888888888888 77888888888887776
Q ss_pred eeee
Q 017030 370 LCSV 373 (378)
Q Consensus 370 ~~~~ 373 (378)
..++
T Consensus 322 t~dv 325 (387)
T 2rij_A 322 LEGT 325 (387)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 6544
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=78.96 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=22.5
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
++.||++|.|+ ++.|. ++.|++++.|+.++.|. +++|++++.|+.+|.+
T Consensus 88 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I 139 (273)
T 3fs8_A 88 DTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFV 139 (273)
T ss_dssp SCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEE
T ss_pred CCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEE
Confidence 44444444444 44442 44555555555444443 3444444444444444
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.8e-07 Score=76.05 Aligned_cols=73 Identities=18% Similarity=0.081 Sum_probs=40.9
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEee-ceEcCCCEECCCCEE-eeeeeCCCCeEeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEH-SVVGIRSRINANVHL-KVSPANPLCRRIWKC 367 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~ 367 (378)
++++.+.+.+++.|++++.| .++.|. ++.||+||.|+ ++.|.+ +.||++|.|++++.| .++.|++++.++.+|
T Consensus 5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~ 82 (192)
T 3mqg_A 5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSM 82 (192)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTC
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCce
Confidence 44555566666666666666 344443 56677777776 555543 555666666555555 234455554444333
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=79.21 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEE
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL 352 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i 352 (378)
++.+.|.+.+.|++++.| ..+.|. ++.||+||.|+ ++.|. ++.||++|+|+++|.|
T Consensus 26 ~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 85 (283)
T 4eqy_A 26 HPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV 85 (283)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEE
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEE
Confidence 333334434444444444 233332 34444444444 44443 3455555555555555
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=72.20 Aligned_cols=68 Identities=7% Similarity=-0.132 Sum_probs=42.3
Q ss_pred ccCCCCCCcee-eCceee---eeEEecCcEEc-ceEEe-------------------eceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIE-------------------HSVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~-------------------~SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.+..|+++++| .++.+. +..||++|.|+ ++.|. ++.||++|.||.+|.|. ++.|+
T Consensus 71 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG 150 (182)
T 1ocx_A 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG 150 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEEC
T ss_pred CCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEEC
Confidence 34556666666 355553 45778888887 77663 46677777777776664 45666
Q ss_pred CCCeEeeeeeeee
Q 017030 359 PLCRRIWKCSSLC 371 (378)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (378)
+++.|+.++.+..
T Consensus 151 ~~~vIgagsvV~~ 163 (182)
T 1ocx_A 151 DNVVVASGAVVTK 163 (182)
T ss_dssp TTCEECTTCEECS
T ss_pred CCCEECCCCEECC
Confidence 6666665555443
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9.3e-07 Score=82.22 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=16.0
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEE
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHL 352 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i 352 (378)
++.||++|.|+ ++.| .+++||++|+|++++.|
T Consensus 150 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 183 (357)
T 4e79_A 150 NVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVI 183 (357)
T ss_dssp TCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred CCEECCCCEECCCcEEecccEEEeEeeccCCeEE
Confidence 44444444444 4444 44555555555555555
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.3e-07 Score=82.96 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=18.0
Q ss_pred eceEcCCCEECCCCEE-----eeeeeCCCCeEeeeeee
Q 017030 337 HSVVGIRSRINANVHL-----KVSPANPLCRRIWKCSS 369 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i-----~~sIi~~~~~~~~~~~~ 369 (378)
+++||++|.||.++.| .+++|+++++|+.+|.+
T Consensus 222 ~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I 259 (372)
T 3pmo_A 222 GVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMI 259 (372)
T ss_dssp CEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEE
T ss_pred CeEECCCCEECCCcEEccCcccceEECCCCEECCCCEE
Confidence 4566666666666666 34555555544444444
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=76.94 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=43.8
Q ss_pred CCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEe-------------eeeeCCC
Q 017030 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK-------------VSPANPL 360 (378)
Q Consensus 298 ~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~-------------~sIi~~~ 360 (378)
+.+.+.+++.|++++.| ..+.|. ++.||++|.|+ ++.|. ++.||++|+|++++.|. +++|+++
T Consensus 10 p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~ 89 (262)
T 2qia_A 10 PTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDR 89 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCC
Confidence 33444444444444444 334443 56666666666 56555 67777777777777775 4667777
Q ss_pred CeEeeeeeeee
Q 017030 361 CRRIWKCSSLC 371 (378)
Q Consensus 361 ~~~~~~~~~~~ 371 (378)
+.|+++|.+..
T Consensus 90 ~~Ig~~~~I~~ 100 (262)
T 2qia_A 90 NRIRESVTIHR 100 (262)
T ss_dssp CEECTTCEEEC
T ss_pred ceeCCCCEEcC
Confidence 77777776654
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-06 Score=78.09 Aligned_cols=67 Identities=6% Similarity=-0.135 Sum_probs=38.9
Q ss_pred cCCCCCCceee-Cceeee-eEEecCcEEc-ceEEe---------eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 305 SRRNLPPSKID-DSKIVD-SIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 305 ~~~i~~~~~i~-~~~i~~-s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
++.|++++.|. ++.|.+ +.||++|.|+ ++.+. +++||++|.||.+|.|. ++.|++++.|+.++.+..
T Consensus 133 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~ 212 (276)
T 3gos_A 133 GAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQ 212 (276)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 33444444442 444443 6666666666 55553 46777777777777665 466666666666665543
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=79.48 Aligned_cols=49 Identities=8% Similarity=-0.128 Sum_probs=33.6
Q ss_pred eEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
+.||++|.|+ ++.+.+ ++||++|.||.+|.|. ++.|++++.|+.++.+.
T Consensus 177 ~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~ 236 (304)
T 3eg4_A 177 AQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIG 236 (304)
T ss_dssp CEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEc
Confidence 5666666666 566655 7788888888777553 47777777777776665
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=76.99 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=15.9
Q ss_pred eeEEecCcEEc-ceEEe-------eceEcCCCEECCCCEE
Q 017030 321 DSIISHGSFIT-SSFIE-------HSVVGIRSRINANVHL 352 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-------~SiI~~~~~Ig~~~~i 352 (378)
++.||++|.|+ ++.|. +++||+++.|+.++.|
T Consensus 79 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I 118 (259)
T 3hsq_A 79 KTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHV 118 (259)
T ss_dssp CEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEE
T ss_pred cEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEE
Confidence 45555666665 55554 4444444444444333
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=76.88 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=14.7
Q ss_pred eeEEecCcEEc-ceEEe--------eceEcCCCEECCCCEE
Q 017030 321 DSIISHGSFIT-SSFIE--------HSVVGIRSRINANVHL 352 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~--------~SiI~~~~~Ig~~~~i 352 (378)
++.||++|.|+ ++.|. +++||+++.|+.++.|
T Consensus 85 ~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I 125 (265)
T 4e6u_A 85 WLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHI 125 (265)
T ss_dssp EEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred eEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEE
Confidence 34445555554 44443 2444444444444444
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-06 Score=74.87 Aligned_cols=76 Identities=11% Similarity=-0.057 Sum_probs=48.3
Q ss_pred cCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEee-ceEcCCCEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
+.+.+.+..++.|+.++.| .++.|. ++.||++|.|+ ++.+.+ +.||++|.||.++.|.. +.|++++.|+.++.+.
T Consensus 120 I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~ 199 (220)
T 4ea9_A 120 VMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVV 199 (220)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEc
Confidence 3344444555556666666 355554 57777777777 666655 77777777777777653 6666666666666554
Q ss_pred e
Q 017030 371 C 371 (378)
Q Consensus 371 ~ 371 (378)
.
T Consensus 200 ~ 200 (220)
T 4ea9_A 200 R 200 (220)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.9e-06 Score=70.73 Aligned_cols=66 Identities=12% Similarity=-0.040 Sum_probs=37.1
Q ss_pred ccCCCCCCcee-eCceeee---eEEecCcEEc-ceEEee-------------------ceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKIVD---SIISHGSFIT-SSFIEH-------------------SVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~~---s~Ig~~~~I~-~~~i~~-------------------SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.+..|+++++| .++.+.+ ..||++|.|+ ++.|.. ++||++|.||.+|.|. ++.|+
T Consensus 74 ~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG 153 (203)
T 1krr_A 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIG 153 (203)
T ss_dssp TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEEC
T ss_pred CCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEEC
Confidence 45566666666 4555543 5778888887 776642 4555555555555544 24444
Q ss_pred CCCeEeeeeee
Q 017030 359 PLCRRIWKCSS 369 (378)
Q Consensus 359 ~~~~~~~~~~~ 369 (378)
+++.|+.++++
T Consensus 154 ~~~vIgagsvV 164 (203)
T 1krr_A 154 DNSVIGAGSIV 164 (203)
T ss_dssp TTCEECTTCEE
T ss_pred CCCEECCCCEE
Confidence 44444444433
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-06 Score=73.38 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.2
Q ss_pred eeEEecCcEEc-ceEEee
Q 017030 321 DSIISHGSFIT-SSFIEH 337 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~ 337 (378)
++.||++|.|+ ++.|.+
T Consensus 100 ~i~IG~~~~Ig~~~~I~~ 117 (215)
T 2wlg_A 100 KISIGKDCMLAHGYEIRN 117 (215)
T ss_dssp EEEECTTCEECTTEEEES
T ss_pred CEEECCCCEEcCCEEEEC
Confidence 45555555555 555554
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=78.70 Aligned_cols=51 Identities=8% Similarity=-0.150 Sum_probs=33.8
Q ss_pred eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
++.||++|.|+ ++.|.+ ++||++|.||.+|.|. ++.|++++.|+.++.+..
T Consensus 192 ~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~ 253 (316)
T 3tk8_A 192 CAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQ 253 (316)
T ss_dssp TCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 45666666666 555554 6777777777777764 366777777777766664
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-06 Score=76.70 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=43.6
Q ss_pred eEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 322 SIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+.||++|.|+ ++.|-. .+||++|.||.|+.| ++.|+++|+|+-++.+..+.+
T Consensus 208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI-gVtIGd~~iIGAGSVVtkdt~ 269 (332)
T 3fsy_A 208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL-GISLGDDCVVEAGLYVTAGTR 269 (332)
T ss_dssp CEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE-CSCBCSSCEECTTCEECTTCE
T ss_pred eEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCE
Confidence 6788888888 777754 899999999999999 888999999988888766543
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-06 Score=76.86 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=6.5
Q ss_pred eeEEecCcEEc
Q 017030 321 DSIISHGSFIT 331 (378)
Q Consensus 321 ~s~Ig~~~~I~ 331 (378)
+++||+||.||
T Consensus 177 ~v~IGd~v~IG 187 (276)
T 3gos_A 177 PTIIEDNCFVG 187 (276)
T ss_dssp CCEECTTCEEC
T ss_pred CeEECCCCEEC
Confidence 35566666665
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-06 Score=76.57 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=35.9
Q ss_pred Cceee-eeEEecCcEEc-ceEEe-----eceEcCCCEECCCCEEe--------------eeeeCCCCeEeeeeeee
Q 017030 316 DSKIV-DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLK--------------VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 316 ~~~i~-~s~Ig~~~~I~-~~~i~-----~SiI~~~~~Ig~~~~i~--------------~sIi~~~~~~~~~~~~~ 370 (378)
++.|. ++.||++|.|+ ++.|. +++||++++|++++.|. ..+|++++.|+++|.+.
T Consensus 49 ~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~ 124 (305)
T 3t57_A 49 SSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIH 124 (305)
T ss_dssp TCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEE
T ss_pred CcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceEEECCCcccCceEEEe
Confidence 44443 67778888887 67775 57888888888888772 14555555555555553
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-06 Score=80.86 Aligned_cols=74 Identities=16% Similarity=0.003 Sum_probs=41.8
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeee
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~ 370 (378)
.+.+.+.+++.|++++.| .++.|. ++.||+||.|+ ++.| .++.||++|.|++++.| .+++|++++.|+.+|.+.
T Consensus 128 ~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig 206 (374)
T 2iu8_A 128 HPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIG 206 (374)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEE
T ss_pred CCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEEC
Confidence 344444455555555555 344443 56666666666 5555 45666666666666666 446666666666555553
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-06 Score=78.57 Aligned_cols=10 Identities=40% Similarity=0.683 Sum_probs=4.8
Q ss_pred eEEecCcEEc
Q 017030 322 SIISHGSFIT 331 (378)
Q Consensus 322 s~Ig~~~~I~ 331 (378)
++||++|.||
T Consensus 203 v~IGd~v~IG 212 (304)
T 3eg4_A 203 TIIEDNCFIG 212 (304)
T ss_dssp CEECTTCEEC
T ss_pred eEEcCCCEEC
Confidence 4444444444
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.12 E-value=7e-07 Score=81.19 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=23.8
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee---------eeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV---------SPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~ 369 (378)
++.||+||.|+ ++.| .++.||++|+|+.++.|.+ ++|+++|.|+.+|.+
T Consensus 174 g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I 233 (316)
T 3tk8_A 174 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEV 233 (316)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEE
T ss_pred CCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEE
Confidence 34455555554 3444 2345555555555555444 445555544444443
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.1e-06 Score=70.32 Aligned_cols=67 Identities=19% Similarity=0.096 Sum_probs=43.4
Q ss_pred cCCCCCCcee-eCcee-eeeEEecCcEEc-ceEEe----eceEcCCCEECCCCEEee-----------------eeeCCC
Q 017030 305 SRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKV-----------------SPANPL 360 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~----~SiI~~~~~Ig~~~~i~~-----------------sIi~~~ 360 (378)
++.|++++.| +++.| .+..||+||.|+ ++.|. +..||++|.|++++.|.+ ++|+++
T Consensus 12 ~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~ 91 (194)
T 3tv0_A 12 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTN 91 (194)
T ss_dssp CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSS
T ss_pred CCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCc
Confidence 3344444444 33443 356677777777 66663 358999999999999954 567777
Q ss_pred CeEeeeeeeee
Q 017030 361 CRRIWKCSSLC 371 (378)
Q Consensus 361 ~~~~~~~~~~~ 371 (378)
+.|+.+|.+..
T Consensus 92 ~~i~~~~~i~~ 102 (194)
T 3tv0_A 92 NVFEVGCYSQA 102 (194)
T ss_dssp CEECTTCEECC
T ss_pred ceEecceeEee
Confidence 77766655543
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.8e-06 Score=75.96 Aligned_cols=74 Identities=20% Similarity=0.018 Sum_probs=46.6
Q ss_pred CcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEe-----------------eceEcCCCEECCCCEEee-ee
Q 017030 300 KPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE-----------------HSVVGIRSRINANVHLKV-SP 356 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~-----------------~SiI~~~~~Ig~~~~i~~-sI 356 (378)
..|.+.+.|++++.|+ ++.|. ++.||+||.|+ ++.|- +++||++|.||.||.|.+ +.
T Consensus 164 v~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv~ 243 (313)
T 3q1x_A 164 IDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNII 243 (313)
T ss_dssp CEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSCE
T ss_pred eEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCcE
Confidence 3445555555555551 23332 34555555554 44432 348899999999998764 88
Q ss_pred eCCCCeEeeeeeeeeee
Q 017030 357 ANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 357 i~~~~~~~~~~~~~~~~ 373 (378)
||++|.|+.++.+..+|
T Consensus 244 IG~~a~IGagsvV~~dV 260 (313)
T 3q1x_A 244 VGSHVRIGANCWIDRDV 260 (313)
T ss_dssp ECSSEEECTTCEECSCB
T ss_pred ECCCCEECCCCEECCCc
Confidence 88888888888776654
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-06 Score=76.25 Aligned_cols=54 Identities=15% Similarity=-0.029 Sum_probs=45.2
Q ss_pred eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEe
Q 017030 321 DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~ 375 (378)
.+.||++|.|+ ++.|-. ++||++|.||.|+.| ++.|+++|+|+.++.+..++..
T Consensus 230 gv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI-GVtIGd~~iIGAGSVVtkdt~I 293 (347)
T 3r5d_A 230 GVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI-GIPLGDRNIVEAGLYITAGTKV 293 (347)
T ss_dssp TCEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE-CSCBCTTCEECTTCEECTTCEE
T ss_pred eEEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEE
Confidence 37888888888 787754 799999999999999 9999999999998888766543
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=9.2e-06 Score=79.22 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=54.4
Q ss_pred CcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee--------eeeCCCCeEeeeeee
Q 017030 300 KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV--------SPANPLCRRIWKCSS 369 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~--------sIi~~~~~~~~~~~~ 369 (378)
+.+.+.+.++..+.| ..+.++||+||+||.|+ .+.+.+|+||+||.||.|+.+-| ++|+++|.||.+|.+
T Consensus 347 ~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l 426 (501)
T 3st8_A 347 TYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMF 426 (501)
T ss_dssp EEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEE
T ss_pred eeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEE
Confidence 344445555566666 45677888888888888 68888888998888888888765 788888888777776
Q ss_pred eee
Q 017030 370 LCS 372 (378)
Q Consensus 370 ~~~ 372 (378)
.+-
T Consensus 427 ~~~ 429 (501)
T 3st8_A 427 VAP 429 (501)
T ss_dssp ESS
T ss_pred cCC
Confidence 543
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-06 Score=73.40 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=22.8
Q ss_pred eEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeee
Q 017030 322 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~s 355 (378)
+.||+||.|| ++.|. ++.||+||+||.|+.|...
T Consensus 217 ~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kd 252 (287)
T 3mc4_A 217 PKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKS 252 (287)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Confidence 5777777777 65554 4677777777777776643
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3e-06 Score=76.13 Aligned_cols=71 Identities=8% Similarity=-0.053 Sum_probs=47.9
Q ss_pred CCCcEEccCCCCCCceee-Ccee-eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee---------eeeCCCCeEee
Q 017030 298 ATKPIYTSRRNLPPSKID-DSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV---------SPANPLCRRIW 365 (378)
Q Consensus 298 ~~~~i~~~~~i~~~~~i~-~~~i-~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~ 365 (378)
+.+.|...+.|++++.|. ++.| .++.||++|.|. ++.+ .++||++|.|++||.|.+ ++|+++|.||.
T Consensus 189 P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~i-gv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGA 267 (347)
T 3r5d_A 189 DTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSA-GVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGA 267 (347)
T ss_dssp SGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECT-TCEECTTEEECTTCEECC------CCCCEECTTCEECT
T ss_pred CcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceE-eEEECCCCEECCCCEEccccCCCCccceEECCCCEECC
Confidence 333444444444444442 2333 256667777776 4444 489999999999999976 79999999988
Q ss_pred eeee
Q 017030 366 KCSS 369 (378)
Q Consensus 366 ~~~~ 369 (378)
+|.+
T Consensus 268 nAtI 271 (347)
T 3r5d_A 268 NAGI 271 (347)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8888
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=9.3e-06 Score=68.31 Aligned_cols=64 Identities=8% Similarity=-0.058 Sum_probs=37.6
Q ss_pred cCCCCCCceeeCceeeeeEEecCcEEc-ceEEeec---eEcCCCEECCCCEE-------------------eeeeeCCCC
Q 017030 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHS---VVGIRSRINANVHL-------------------KVSPANPLC 361 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~S---iI~~~~~Ig~~~~i-------------------~~sIi~~~~ 361 (378)
++.|.++.++.-. .++.||++|.|+ ++.|.++ .||++|.||++|.| ..++|+++|
T Consensus 62 ~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v 139 (188)
T 3srt_A 62 QINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNV 139 (188)
T ss_dssp CEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSC
T ss_pred CCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCc
Confidence 3444455444100 356666666666 5666543 67888888888877 345566666
Q ss_pred eEeeeeeee
Q 017030 362 RRIWKCSSL 370 (378)
Q Consensus 362 ~~~~~~~~~ 370 (378)
.|+.+|.+.
T Consensus 140 ~IG~~~~I~ 148 (188)
T 3srt_A 140 WIGGGVIIT 148 (188)
T ss_dssp EECTTCEEC
T ss_pred EEcCCCEEC
Confidence 666655554
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=69.35 Aligned_cols=37 Identities=11% Similarity=-0.069 Sum_probs=26.4
Q ss_pred eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeeee
Q 017030 337 HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~~ 373 (378)
+++||++|.||.||.|. ++.|+++|.|+.++.+..+|
T Consensus 119 ~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dV 156 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNV 156 (220)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCB
T ss_pred CeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccC
Confidence 35688888888887776 47777777777777765543
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-05 Score=69.25 Aligned_cols=65 Identities=8% Similarity=-0.078 Sum_probs=46.6
Q ss_pred CCCCCCcee-eCceee----eeEEecCcEEcceEE-----eeceEcCCCEECCCCEEeee--------------------
Q 017030 306 RRNLPPSKI-DDSKIV----DSIISHGSFITSSFI-----EHSVVGIRSRINANVHLKVS-------------------- 355 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~----~s~Ig~~~~I~~~~i-----~~SiI~~~~~Ig~~~~i~~s-------------------- 355 (378)
..|++++.| .++.+. ++.||++|.|+.+.+ .+++||++|.|++++.|.++
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v 138 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV 138 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence 556677777 346665 388899999984334 57889999999999888863
Q ss_pred eeCCCCeEeeeeeee
Q 017030 356 PANPLCRRIWKCSSL 370 (378)
Q Consensus 356 Ii~~~~~~~~~~~~~ 370 (378)
+|+++|.|+.+|.+.
T Consensus 139 ~Igd~v~IG~~~~I~ 153 (215)
T 2wlg_A 139 IIGNHVWLGRNVTIL 153 (215)
T ss_dssp EECTTCEECTTCEEC
T ss_pred EECCCcEECCCCEEC
Confidence 667766666666554
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=97.94 E-value=8e-06 Score=73.70 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=17.2
Q ss_pred EEecCcEEc-ceEEe-eceEcCCCEECCCCEEee
Q 017030 323 IISHGSFIT-SSFIE-HSVVGIRSRINANVHLKV 354 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~ 354 (378)
+||+||.|| ++.|. ++.||+||+||.|+.|..
T Consensus 253 ~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~ 286 (310)
T 3f1x_A 253 ILEDDVIVYSNATILGRVTIGKGATVGGNIWVTE 286 (310)
T ss_dssp EECTTCEECTTCEEESSCEECTTCEECSSCEECS
T ss_pred EECCCcEEcCCCEECCCcEECCCCEECCCCEECC
Confidence 455555555 54444 555555555555555543
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=68.45 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=17.4
Q ss_pred eeEEecCcEEc-ceEEee---ceEcCCCEECCCCEE
Q 017030 321 DSIISHGSFIT-SSFIEH---SVVGIRSRINANVHL 352 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~---SiI~~~~~Ig~~~~i 352 (378)
++.||+||.|+ ++.|.+ ..||++|.||++|.|
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I 109 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGF 109 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEE
T ss_pred CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEE
Confidence 44455555554 444432 266666666666666
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=67.29 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=20.4
Q ss_pred eeEEecCcEEc-ceEEee---ceEcCCCEECCCCEEee
Q 017030 321 DSIISHGSFIT-SSFIEH---SVVGIRSRINANVHLKV 354 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~---SiI~~~~~Ig~~~~i~~ 354 (378)
++.||+||.|+ ++.|.+ .+||++|.||++|.|..
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~ 113 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYT 113 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEEC
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEec
Confidence 44555555555 455532 26777777777776643
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=70.83 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=40.0
Q ss_pred cEEccCCCCCCcee-eCceeee---------eEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeee
Q 017030 301 PIYTSRRNLPPSKI-DDSKIVD---------SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 301 ~i~~~~~i~~~~~i-~~~~i~~---------s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~s 355 (378)
.|..+++|+.+|.| .++++.+ ++||+||.|| ++.|. ++.||++|+||.|+.|...
T Consensus 159 vIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~d 225 (267)
T 1ssq_A 159 VVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP 225 (267)
T ss_dssp EECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred EECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccC
Confidence 34445556666666 3555544 5899999999 87775 6889999999999988765
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=70.95 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=37.7
Q ss_pred EEccCCCCCCcee-eCceeee---------eEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeee
Q 017030 302 IYTSRRNLPPSKI-DDSKIVD---------SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~~---------s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~s 355 (378)
|..+++|+.+|.| .++++.+ ++||+||.|| ++.|. ++.||++|+||.|+.|...
T Consensus 180 IG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d 245 (289)
T 1t3d_A 180 VGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP 245 (289)
T ss_dssp ECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred ECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccC
Confidence 3344555555555 3455543 6899999999 87665 6788888888888888764
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.6e-05 Score=65.69 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=20.2
Q ss_pred eeEEecCcEEc-ceEEe---eceEcCCCEECCCCEE
Q 017030 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHL 352 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~---~SiI~~~~~Ig~~~~i 352 (378)
++.||++|.|+ ++.|. +..||++|.||++|.|
T Consensus 78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I 113 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHI 113 (190)
T ss_dssp TEEECTTCEECTTCEEECSSCEEECTTCEECTTCEE
T ss_pred ceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEE
Confidence 44555555555 45553 4467777777777777
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.1e-05 Score=70.20 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=44.0
Q ss_pred CCcEEccCCCCCCcee-eCceee-------eeEEecCcEEcceEEeeceEcCCCEECCCCEEee---------eeeCCCC
Q 017030 299 TKPIYTSRRNLPPSKI-DDSKIV-------DSIISHGSFITSSFIEHSVVGIRSRINANVHLKV---------SPANPLC 361 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-~~~~i~-------~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~---------sIi~~~~ 361 (378)
...|.+.+.|.++++| +++.|- ++.|+.+|.|.+....++.||++|.|++||.|.. ++|+++|
T Consensus 161 gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv 240 (332)
T 3fsy_A 161 GVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRC 240 (332)
T ss_dssp TCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECTTC
T ss_pred CcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECCCC
Confidence 3444455555555555 333332 3344444444311112478999999999999976 8888888
Q ss_pred eEeeeeee
Q 017030 362 RRIWKCSS 369 (378)
Q Consensus 362 ~~~~~~~~ 369 (378)
.|+.+|.|
T Consensus 241 ~IGanAtI 248 (332)
T 3fsy_A 241 LLGANSGL 248 (332)
T ss_dssp EECTTCEE
T ss_pred EECCCCEE
Confidence 88888887
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.80 E-value=3.9e-05 Score=65.82 Aligned_cols=34 Identities=6% Similarity=-0.068 Sum_probs=20.2
Q ss_pred ceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 338 SVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
++||++|.||.+|.|. ++.|+++|.|+-++.+..
T Consensus 112 v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~ 146 (212)
T 3eev_A 112 TIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTK 146 (212)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 5666666666666665 355555555555555543
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.8e-05 Score=71.82 Aligned_cols=13 Identities=31% Similarity=0.049 Sum_probs=6.0
Q ss_pred EEEEeHHHHHHHH
Q 017030 225 VYLFKKEILLNLL 237 (378)
Q Consensus 225 iy~~~~~~l~~~l 237 (378)
++-++++.+..++
T Consensus 82 ~~~~~~~~~~~~~ 94 (387)
T 2rij_A 82 VQTLKLEDIDFAL 94 (387)
T ss_dssp EEECCHHHHHHHH
T ss_pred eEeCCHHHHHHHH
Confidence 3444555554443
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.5e-05 Score=64.79 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=22.0
Q ss_pred eeEEecCcEEc-ceEEee---ceEcCCCEECCCCEEe
Q 017030 321 DSIISHGSFIT-SSFIEH---SVVGIRSRINANVHLK 353 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~---SiI~~~~~Ig~~~~i~ 353 (378)
+..||+||.|+ ++.|.+ ..||++|.||++|.|.
T Consensus 75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~ 111 (203)
T 1krr_A 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLS 111 (203)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEE
T ss_pred CeEECCeeEECCccEEecccceEECCCCEECCCCEEe
Confidence 55666666666 565554 5777777777777664
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00022 Score=69.51 Aligned_cols=172 Identities=17% Similarity=0.210 Sum_probs=101.3
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhh-cCCc-EEEEEee-cChhhHHHHHHhhccCC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN-SGIN-KVYILTQ-YNSASLNRHLARAYNYG 80 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~-~gi~-~I~iv~~-~~~~~i~~~l~~~~~~~ 80 (378)
.++.+|+||||.||||+ ...||.++|+. |+ +++++.++++.+ +|.. ..+|.++ ...+...+++.+ |.+.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~ 187 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLE 187 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCC
Confidence 47889999999999997 78999999997 89 999999999876 3543 4566664 455678888876 5332
Q ss_pred CC-cc-cCCceEEEeccccCC---CcCC--CccccCcHHHHHHHHH--------------------HhcCCCCCCCCeEE
Q 017030 81 SG-VT-FGDGCVEVLAATQTP---GEAG--KRWFQGTADAVRQFHW--------------------LFEDPRNKVIEDVL 133 (378)
Q Consensus 81 ~~-~~-~~~~~i~i~~~~~~~---~~~~--~~~~~Gt~~al~~~~~--------------------~i~~~~~~~~~~~l 133 (378)
.. .. |....+-.+...... .+.+ ...+.|.|+....... .+++....+.+.+.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 21 11 111111111100000 0001 1224466654433221 22222223468999
Q ss_pred EEcCCeEE-ecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE--CCCCCE
Q 017030 134 ILSGDHLY-RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGRV 185 (378)
Q Consensus 134 v~~gD~~~-~~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~v 185 (378)
+.+.|.+. ..---.++.++.++++++.+-+.+... ...-|.+.. ..+|+.
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~ 320 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDP 320 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSC
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCce
Confidence 99999943 222234678888899998888776532 344555443 345655
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=97.60 E-value=9e-05 Score=62.00 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=33.8
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeee
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWK 366 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~ 366 (378)
++.||++|.|| ++.|. ++.||++|+||.|+.|... +.+++.++.+
T Consensus 130 ~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~-vp~~~vv~G~ 176 (185)
T 2p2o_A 130 PVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD-VPANAVVGGN 176 (185)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC-BCTTEEEEET
T ss_pred CeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC-CCCCcEEEcc
Confidence 67899999999 77776 7888888888888888766 4455555543
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=97.54 E-value=4.6e-05 Score=68.90 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=3.7
Q ss_pred CCCCCCcee
Q 017030 306 RRNLPPSKI 314 (378)
Q Consensus 306 ~~i~~~~~i 314 (378)
..|++++.|
T Consensus 164 v~I~p~a~I 172 (313)
T 3q1x_A 164 IDIHPGASI 172 (313)
T ss_dssp CEECTTCEE
T ss_pred eEECCCCEE
Confidence 334444444
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00013 Score=60.77 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=8.0
Q ss_pred ceEcCCCEECCCCEE
Q 017030 338 SVVGIRSRINANVHL 352 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i 352 (378)
..||++|.|+++|.|
T Consensus 93 i~IG~~v~Ig~~v~I 107 (182)
T 1ocx_A 93 IRIGDNCMLAPGVHI 107 (182)
T ss_dssp EEECTTCEECTTCEE
T ss_pred eEEcCCcEEeCCcEE
Confidence 345555555555555
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00027 Score=60.71 Aligned_cols=34 Identities=9% Similarity=-0.107 Sum_probs=20.2
Q ss_pred ceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeee
Q 017030 338 SVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLC 371 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~ 371 (378)
++||++|.||.+|.|.. +.|++++.|+.++.+..
T Consensus 119 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~ 153 (219)
T 4e8l_A 119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK 153 (219)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred cEECCCeEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 55666666666666653 55555555555555443
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00025 Score=60.49 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=17.4
Q ss_pred ceEcCCCEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 338 SVVGIRSRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
++||++|.||.++.|.. +.|++++.|+.++.+.
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~ 147 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV 147 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEc
Confidence 44555555555555542 4555555555554443
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00045 Score=58.94 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=8.2
Q ss_pred eeEEecCcEEc-ceEE
Q 017030 321 DSIISHGSFIT-SSFI 335 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i 335 (378)
...||++|.|+ ++.|
T Consensus 56 ~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 56 KLVIGSFCSIGSGAAF 71 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEEcCCCEECCCCEE
Confidence 44566666665 5544
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00056 Score=58.48 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=17.4
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEe
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 353 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~ 353 (378)
++.||++|.|| ++.|. ++.||++|+||.|+.|.
T Consensus 111 ~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~ 145 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT 145 (212)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 35666666666 44332 44555555555555544
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00055 Score=58.90 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=14.6
Q ss_pred eEEecCcEEc-ceEEe-eceEcCCCEECCCCEEe
Q 017030 322 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 353 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~ 353 (378)
++||++|.|| +|.|. ++.||++|.||.++.|.
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~ 153 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT 153 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCCEEc
Confidence 4455555555 43332 34444444444444443
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00025 Score=60.64 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=69.4
Q ss_pred cceeEEEEc--CCCCcccccccccCccccee----ecCeeeeeeeehhhhhhcCCcEE-EEEeecChhhHHHHHHhhccC
Q 017030 7 RTVAAVILG--GGAGTRLYPLTKQRAKPAVP----IGGAYRLIDVPMSNCINSGINKV-YILTQYNSASLNRHLARAYNY 79 (378)
Q Consensus 7 ~~~~avIla--~G~g~rl~plt~~~pK~llp----i~g~~pli~~~l~~l~~~gi~~I-~iv~~~~~~~i~~~l~~~~~~ 79 (378)
+.|.+||++ +..-|||. +.|-| ..++ ||++|+++.+..+++..+ ++++++.. .. . +
T Consensus 2 ~~~~~vip~k~g~~KtRL~-------~~l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~--~~----~-~-- 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLS-------PVLSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYG--LE----E-M-- 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGT-------TTSCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTT--CS----S-C--
T ss_pred CceEEEEEeCCCCCccccC-------ccCCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHH--HH----h-h--
Confidence 568999999 66778875 34433 6679 999999999999988898 88876532 11 0 0
Q ss_pred CCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHH
Q 017030 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (378)
Q Consensus 80 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~ 150 (378)
++ +.++... .|.+.++..+...+ .+.++++.||+ ++..+ +..+++
T Consensus 65 -----~~---~~~v~~~-----------~gl~~sl~~a~~~~-------~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 -----TE---ARVLLDE-----------KDLNEALNRYLKEA-------EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp -----CS---SEEEECC-----------SCHHHHHHHHHHHC-------CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred -----cC---CEEEECC-----------CCHHHHHHHHHHhc-------CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 12 2232211 27889999887665 27899999999 44444 666655
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.003 Score=53.75 Aligned_cols=33 Identities=15% Similarity=-0.063 Sum_probs=26.3
Q ss_pred CCCEECCCCEEee-eeeCCCCeEeeeeeee-eeeE
Q 017030 342 IRSRINANVHLKV-SPANPLCRRIWKCSSL-CSVI 374 (378)
Q Consensus 342 ~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~-~~~~ 374 (378)
.+++||++|.|.. |+|.++++|+++|.+. +|+|
T Consensus 112 ~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V 146 (209)
T 1mr7_A 112 GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVV 146 (209)
T ss_dssp CCEEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEE
Confidence 3588999999976 8899999999999885 4444
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0073 Score=51.67 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=21.3
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeee
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~s 355 (378)
+++||++|.|| ++.|. ++.||++++||.++.|...
T Consensus 118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~d 154 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN 154 (219)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred CcEECCCeEECCCCEEcCCCEECCCCEECCCCEEccc
Confidence 56777777777 55444 3556666666666665543
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.041 Score=46.68 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=22.3
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeee
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~s 355 (378)
.+.||++|.|| ++.|. ++.||++|+||.++.|...
T Consensus 110 ~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~ 146 (212)
T 1xat_A 110 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD 146 (212)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred CeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 45667777776 55443 5666777777777766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 378 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 2e-75 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 3e-34 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 4e-31 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 1e-30 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 2e-22 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 3e-22 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 8e-12 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 1e-09 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 8e-09 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 5e-06 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 5e-05 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 0.003 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 234 bits (596), Expect = 2e-75
Identities = 183/304 (60%), Positives = 237/304 (77%), Gaps = 7/304 (2%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+N
Sbjct: 9 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 68
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 69 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPD--WFQGTADAVRQYLWLFEEHT 126
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
+ LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR+
Sbjct: 127 V---LEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 183
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
+ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +FP AN
Sbjct: 184 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 243
Query: 246 DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIY 303
DFGSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIY
Sbjct: 244 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIY 303
Query: 304 TSRR 307
T R
Sbjct: 304 TQPR 307
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 126 bits (317), Expect = 3e-34
Identities = 54/278 (19%), Positives = 102/278 (36%), Gaps = 51/278 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASL- 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L N+G +++ A Q G A A
Sbjct: 63 QQLLGDGSNWG---------LDLQYAVQP-------SPDGLAQAFLIGE-----SFIGND 101
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
L+L + Y D+ + + + Q ++ + D +G+++ + G+ +S
Sbjct: 102 LSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLE 159
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA--NDF 247
EKP E K A G+Y + +++ +++ R P+
Sbjct: 160 EKPL---------------------EPKSNYAVTGLYFYDQQV-VDIARDLKPSPRGELE 197
Query: 248 GSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEAN 283
+++ A L + W D GT S EA
Sbjct: 198 ITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAG 235
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 117 bits (295), Expect = 4e-31
Identities = 63/279 (22%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
++L GG+GTRLYP+T+ +K +PI +I P+S + +GI + I++ L
Sbjct: 6 GIVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
R L G G FG V Q +G ADA D +
Sbjct: 65 RDL-----LGDGSQFG---VRFSYRVQE-------EPRGIADAFIVGKDFIGDS-----K 104
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+L + Y + + ++ I + D FG+++ ++EGRV+S E
Sbjct: 105 VALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEGRVISIEE 162
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KP K G+Y + +++ R +D G
Sbjct: 163 KPS---------------------RPKSNYVVPGLYFYDNQVVEIARRIE---PSDRGEL 198
Query: 251 IIPASANEQFLKAYL------FNDYWEDIGTIRSFFEAN 283
I + E L W D GT EA+
Sbjct: 199 EITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEAS 237
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 116 bits (292), Expect = 1e-30
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 55/280 (19%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG+GTRL+P+T+ +K +PI +I P+S + +GI ++ I+T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ L G G FG +++ A Q + G A A
Sbjct: 63 QRL-----LGDGSEFG---IQLEYAEQPSPD-------GLAQAFIIGETFLNGE-----P 102
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+L + + + +++ T+ + D FG+++ ++ R +S E
Sbjct: 103 SCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNFRAISLEE 160
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK + K A G+Y + ++ + + P+ E
Sbjct: 161 KPK---------------------QPKSNWAVTGLYFYDSKV-VEYAKQVKPSER---GE 195
Query: 251 IIPASANEQFLKAYLFN-------DYWEDIGTIRSFFEAN 283
+ S N+ +L+A W D GT S EA+
Sbjct: 196 LEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 95.0 bits (236), Expect = 2e-22
Identities = 33/264 (12%), Positives = 83/264 (31%), Gaps = 41/264 (15%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCI------NSGINKVYILT 62
+ + L GG GT + K + + +D+ + + V + +
Sbjct: 75 LVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNS 131
Query: 63 QYNSASLNRHLARAYNYGSGVTF----------GDGCVEVLAATQTPGEAGKRWFQGTAD 112
++ + + N + D V + +T E + G D
Sbjct: 132 FNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEG--WYPPGHGD 189
Query: 113 AVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170
+ ++ E V + + D+L + + +++ Q+ + + P +
Sbjct: 190 VFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLAD 249
Query: 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 230
L+ + ++L ++ P +++ ++ EK I +
Sbjct: 250 VKGGTLISYEGKVQLLEIAQVPDEH-------------VNEFKSIEKFKIFNTNNLWVNL 296
Query: 231 EILLNLLRWRFPTANDFGSEIIPA 254
+ + L+ A+ EIIP
Sbjct: 297 KAIKKLVE-----ADALKMEIIPN 315
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 92.8 bits (229), Expect = 3e-22
Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 32/273 (11%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL T + KP V IGG ++ M GI I Y +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ A + + S VTF R +
Sbjct: 64 EYFANYFLHMSDVTFHMAE---------------------------NRMEVHHKRVEPWN 96
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+ +GD + V + + + + G+ + +
Sbjct: 97 VTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTA 156
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
A+ + + +++ + + + G ++ ++ + + E
Sbjct: 157 TFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDAT----TWEQE 212
Query: 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283
+ A + L A+ +W+ + T+R
Sbjct: 213 PLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 62.4 bits (150), Expect = 8e-12
Identities = 29/280 (10%), Positives = 74/280 (26%), Gaps = 67/280 (23%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 64
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ A + + ++
Sbjct: 65 YLKEKYGVR--------------------------LVFNDKYADYNNFYSLYLVKEELAN 98
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
+I + ++L++ + + + + ++ + ++ +V
Sbjct: 99 SYVIDADNYLFKNMFRNDLTRST---------YFSVYREDCTNEWFLVYGDDYKVQDIIV 149
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI------LLNLLRWRFPTA 244
K GV + ++
Sbjct: 150 DSKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFV 185
Query: 245 NDFGSEIIPASANEQFLKAYLF-NDYWEDIGTIRSFFEAN 283
+ + ++ + E + + +I +++ + +
Sbjct: 186 DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 54.0 bits (129), Expect = 1e-09
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 309 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIW 365
LPPSK+ D+ + DS+I G I + I HSVVG+RS I+ ++ S
Sbjct: 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYET 58
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 53.5 bits (127), Expect = 8e-09
Identities = 37/265 (13%), Positives = 72/265 (27%), Gaps = 45/265 (16%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTR+ K + G +++ + K + + + +
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
LA + + + GT AV + E
Sbjct: 60 EVLAGQTEFVT----------------------QSEQLGTGHAVMMTEPILEGLSG--HT 95
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
V+ + + + H TI D+ +G + N+ VL E
Sbjct: 96 LVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNP--FGYGRIVRNDNAEVLRIVE 153
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
+ D + G + E L + + ++
Sbjct: 154 QKDATD-FEKQIKEINTGTYVFDNERLFEA-------------LKNINTNNAQGEYYITD 199
Query: 251 IIP-ASANEQFLKAYLFNDYWEDIG 274
+I + + AY D+ E +G
Sbjct: 200 VIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 45.0 bits (105), Expect = 5e-06
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 9 VAAVILGGGAGTRLYPL-TKQRAKPAVPIGGAYRLID 44
A+++ GG G RL+PL + R KP +P+ L++
Sbjct: 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLE 39
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (97), Expect = 5e-05
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA 67
++ VIL G GTR+Y K + G ++ + G V+++ +
Sbjct: 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKA-MVQHVIDAANELGAAHVHLVYGHGGD 57
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQ 97
L + L G +
Sbjct: 58 LLKQALKDDNLNWVLQAEQLGTGHAMQQAA 87
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 36.8 bits (84), Expect = 0.003
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+A++L GG +K VP G +++ + +G++ VY+
Sbjct: 2 RPSAIVLAGGKEAWAERFG-VGSKALVPYRG-RPMVEWVLEALYAAGLSPVYVGENPG 57
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 378 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 100.0 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.97 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.95 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.92 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.74 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.68 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.64 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.63 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.51 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.49 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.48 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.46 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.27 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.27 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.26 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.22 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.1 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.09 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.06 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.02 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.01 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.57 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.42 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.28 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.25 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.2 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.16 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.07 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.05 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.02 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 97.99 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 97.99 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 97.86 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 97.78 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 97.7 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.7 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 97.63 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 97.55 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 97.46 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.33 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 97.33 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.28 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.26 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.2 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 97.05 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 96.92 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 96.91 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 96.89 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 96.27 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 95.9 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 95.18 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=2.7e-44 Score=329.87 Aligned_cols=295 Identities=62% Similarity=1.097 Sum_probs=232.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
.++.|||||||.||||+|+|.++||+|+||+|++|||+|++++|.++|+++|+|+++++.+++.+|+.+.+....+..-.
T Consensus 10 ~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~ 89 (307)
T d1yp2a2 10 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 89 (307)
T ss_dssp HHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------
T ss_pred CceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccc
Confidence 44999999999999999999999999999988549999999999999999999999999999999998765221110001
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
.....++...+.. .+..++.|++++++.+...+.+. ..++|++++||++++.|+..+++.|+.+++++++++...
T Consensus 90 ~~~~~~~~~~~~~--~~~~~~~g~~~ai~~~~~~i~~~---~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 164 (307)
T d1yp2a2 90 EGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEEH---TVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPM 164 (307)
T ss_dssp CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTTS---CCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred cccceeeceeeec--cccccccchhHHHHHhHHhhhcc---ccceEEEecCcceeccchhhhhhhhhhccccceEEEEec
Confidence 1123333333332 23445689999999999998752 257899999999999999999999999999999998887
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (378)
.......||++.+|++++|.+|.|||..........+..+++...........+.++|+|+|++++|..+++...+...+
T Consensus 165 ~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~ 244 (307)
T d1yp2a2 165 DEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAND 244 (307)
T ss_dssp CHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCC
T ss_pred ccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccc
Confidence 76667789999999999999999999877655555555555555544445567899999999999998888776666677
Q ss_pred hhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCC-CCccccCCCCcEEccC
Q 017030 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSR 306 (378)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~ 306 (378)
+..++++.+++. .++.+++++|||.|||||++|.+||++++++. +...+++++++||++.
T Consensus 245 ~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~ 306 (307)
T d1yp2a2 245 FGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQP 306 (307)
T ss_dssp TTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCC
T ss_pred hHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCC
Confidence 788899888775 57999999999999999999999999999876 4446888999999875
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.3e-41 Score=305.67 Aligned_cols=234 Identities=22% Similarity=0.365 Sum_probs=194.1
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEee-cChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~-~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++|||||||.||||+|+|...||||+||+|+ |||+|+|++|..+|+++|+|+++ ++.+.+++++. ++..++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~------~~~~~g 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLG------DGSNWG 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT------TSGGGT
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhc------cccccC
Confidence 47999999999999999999999999999999 99999999999999999988876 55566776664 344555
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
.. +.++ .|. .+.|||+|+..+.+++++ ++.|+++++|++++.|+.+++++|.++++.+|+++.++
T Consensus 74 ~~-I~y~--~q~-------~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V 138 (292)
T d1fxoa_ 74 LD-LQYA--VQP-------SPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 138 (292)
T ss_dssp CE-EEEE--ECS-------SCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred eE-EEEc--cCC-------CCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEEC
Confidence 33 2222 233 247999999999999975 45678888899999999999999999999999999998
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (378)
++ +++||+++.|++|+++++.|||..+ .|+++.+|+|+|++++++ ++++..+..
T Consensus 139 ~~--p~~yGV~~~d~~~ki~~~~EKP~~p---------------------~Snla~~G~Y~f~~~~~~-~~~~l~~s~rg 194 (292)
T d1fxoa_ 139 LD--PERYGVVEFDQGGKAISLEEKPLEP---------------------KSNYAVTGLYFYDQQVVD-IARDLKPSPRG 194 (292)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSC---------------------SSSEEEEEEEEECTTHHH-HHHHCCCCTTS
T ss_pred CC--HHHCeEEEEcCCCCEeEEEECCCCC---------------------CCCcEEEEEEEEChHHHH-HHHhCCCCCCC
Confidence 76 6799999999999999999999754 358999999999999985 666654542
Q ss_pred CchhcccccccccccceEEEEec-c-eEEecCCHHHHHHHHHhcc
Q 017030 245 NDFGSEIIPASANEQFLKAYLFN-D-YWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~-~-~~~~i~t~~~~~~a~~~~l 287 (378)
.....|+++.+++++++.++.+. | +|+|+||+++|++|++.+.
T Consensus 195 E~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 195 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 22346788888888888887774 4 5999999999999998664
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-41 Score=302.08 Aligned_cols=232 Identities=25% Similarity=0.391 Sum_probs=189.4
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhh-HHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS-LNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~-i~~~l~~~~~~~~~~~~~~ 87 (378)
|+|||||||.||||+|+|...||||+||+|+ |||+|+|+.|..+|+++|+|+++++.+. +++++ +++.+|+.
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~------~~g~~~gi 74 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLL------GDGSEFGI 74 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH------TTSGGGTC
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHh------CchHhhCc
Confidence 8999999999999999999999999999999 9999999999999999999999887654 44443 45667764
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
. +.+ ..|.. ++|||+|+..+.+++++ ++.++++++|+++..++..++++|.++++++|+++.+++
T Consensus 75 ~-I~y--~~Q~~-------plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~ 139 (291)
T d1mc3a_ 75 Q-LEY--AEQPS-------PDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM 139 (291)
T ss_dssp E-EEE--EECSS-------CCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS
T ss_pred E-EEE--EECCC-------CCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECC
Confidence 3 222 23432 47999999999999974 344666777778999999999999999899999999998
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC-c
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN-D 246 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~-~ 246 (378)
+ +++||+++.|++|+|.++.|||..+. ++++++|+|+|++++++ .+++..+..+ +
T Consensus 140 d--P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rgE 195 (291)
T d1mc3a_ 140 D--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGE 195 (291)
T ss_dssp C--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSS
T ss_pred C--cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCCc
Confidence 7 78999999999999999999998643 58999999999999996 4455444322 2
Q ss_pred h-hcccccccccccceEEEEec-c-eEEecCCHHHHHHHHHhc
Q 017030 247 F-GSEIIPASANEQFLKAYLFN-D-YWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 247 ~-~~~~l~~l~~~~~i~~~~~~-~-~~~~i~t~~~~~~a~~~~ 286 (378)
+ ..++++.+++++.+..+.+. + +|.|+||+++|++|+..+
T Consensus 196 ~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 196 LEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp CCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred eeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 1 24677777777777776653 4 599999999999999755
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=3.8e-35 Score=266.52 Aligned_cols=234 Identities=23% Similarity=0.352 Sum_probs=184.1
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhh-HHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS-LNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~-i~~~l~~~~~~~~~~~~ 85 (378)
..|+|||||||.||||+|+|.+.||||+||+|+ |||+|+++.+..+|+++++|+++++... +++++.+ ...+
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~------~~~~ 74 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD------GSQF 74 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGG
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhcc------chhc
Confidence 369999999999999999999999999999999 9999999999999999999999877654 4455432 2334
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.. +.++. |+. +.|||+|+..+..++++ ++.++++++|++++.++..++..|.+.+..+|+++.+
T Consensus 75 ~~~-i~~v~--e~~-------~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~ 139 (295)
T d1lvwa_ 75 GVR-FSYRV--QEE-------PRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp TSE-EEEEE--CSS-------CCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred CCE-EEEEE--CCC-------CCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEE
Confidence 332 33332 221 36999999999999975 4678888888899999999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (378)
.++ +.+||++..+.+++|.+|.|||.... ++++++|+|+|++.+|. ++++..+. .
T Consensus 140 ~~~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~ 195 (295)
T d1lvwa_ 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTT
T ss_pred cCC--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcC
Confidence 876 67899999988999999999997542 36889999999999985 44443222 1
Q ss_pred C-chhcccccccccccc--eEEEEecceEEecCCHHHHHHHHHhc
Q 017030 245 N-DFGSEIIPASANEQF--LKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 245 ~-~~~~~~l~~l~~~~~--i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
. ....++++.++.... ++.+..+.+|.|+||+++|.+|+..+
T Consensus 196 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred CCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 1 122345566665554 44445567899999999999998765
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.8e-33 Score=247.17 Aligned_cols=240 Identities=25% Similarity=0.322 Sum_probs=177.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|..+|||||||.||||+|+|.+.||||+||+|+ |||+|+|+.|.++|+++|+|+++|..+++++|+.+.+.......+.
T Consensus 1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~ 79 (259)
T d1tzfa_ 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence 357999999999999999999999999999999 9999999999999999999999999999999987543211111110
Q ss_pred --------------CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHH
Q 017030 87 --------------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNH 152 (378)
Q Consensus 87 --------------~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h 152 (378)
...+.++... ...++.+++..+...+.. +++|+++++|.+++.++..+++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~ 145 (259)
T d1tzfa_ 80 MAENRMEVHHKRVEPWNVTLVDTG---------DSSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFH 145 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECC---------SSCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHH
T ss_pred hccccchhhhccccccceeEEecc---------ccccccchhhhhhhhccC-----CCceEEeccccccccchhhhhhhh
Confidence 0012222211 236899999988877754 578999999999999999999999
Q ss_pred HHcCCcEEEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHH
Q 017030 153 RQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 232 (378)
Q Consensus 153 ~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~ 232 (378)
.......+...... .+.++.+... .+.+..+.+.+... +.+.++|+|++++++
T Consensus 146 ~~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~ 198 (259)
T d1tzfa_ 146 KAHGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSV 198 (259)
T ss_dssp HHHCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGG
T ss_pred cccccceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchh
Confidence 98888877766543 3456666554 45666666555432 356789999999998
Q ss_pred HHHHHhhhCCCCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCC
Q 017030 233 LLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM 292 (378)
Q Consensus 233 l~~~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~ 292 (378)
+. .++ .....+..++++.+++++++++|.++|||.||||++||..+++.+.+....
T Consensus 199 ~~-~i~---~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~~ 254 (259)
T d1tzfa_ 199 ID-LID---NDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254 (259)
T ss_dssp GG-GCC---STTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCT
T ss_pred hh-hcc---cCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCCC
Confidence 74 322 223455678899999999999999999999999999999999998876533
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2e-32 Score=244.59 Aligned_cols=236 Identities=21% Similarity=0.335 Sum_probs=166.2
Q ss_pred cceeEEEEcCCCCcccccc-cccCcccceeec-Ceeeeeeeehhhhhh-cCCcEEEEEeecChhhHHHHHHhhccCCCCc
Q 017030 7 RTVAAVILGGGAGTRLYPL-TKQRAKPAVPIG-GAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~pl-t~~~pK~llpi~-g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~ 83 (378)
|++.|||||||.||||+|| |.++||||+||. |+ |||+|+++++.. .+.++++|++++..+.+.++. ..+.
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~------~~~~ 73 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPY------ADGI 73 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG------CSSS
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh------cccc
Confidence 4567999999999999999 678899999985 58 999999999887 477889999988877665432 2221
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCH--HHHHHH---HHHcCCc
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY--MDFVQN---HRQSGAD 158 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~--~~~l~~---h~~~~~~ 158 (378)
+ + ++. .+ ..||++++..+...+.. ..++.|+|++||+++..++ ...+.. +.+++..
T Consensus 74 ~-----i-i~E-~~---------~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~ 134 (268)
T d2cu2a2 74 R-----L-LLE-PL---------GRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFV 134 (268)
T ss_dssp E-----E-EEE-SS---------CCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCE
T ss_pred c-----e-eee-ee---------cCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCe
Confidence 1 1 221 11 25899998877665532 1258999999999998874 334433 2345667
Q ss_pred EEEEEeecCCCCCCcceEEEECCCC----CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHH
Q 017030 159 ITISCLPMDDSRASDFGLMKINNEG----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~----~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 234 (378)
+|+...+... +..||++..++++ +|.+|.|||....+..+.. ..+++|+|+|+|++++|.
T Consensus 135 ~~~~~~~~~~--~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~--------------~~~~~N~Giy~f~~~~l~ 198 (268)
T d2cu2a2 135 VALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIR--------------KGYVWNGGVFAFAPATMA 198 (268)
T ss_dssp EEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHH--------------TTCEEEEEEEEECHHHHH
T ss_pred Eeeecccccc--ccccceEEeccccccchhhheeecccchhhhhhhhc--------------cCcccchhhhhcchHHHH
Confidence 7777766554 6889999886543 7999999998765433221 236899999999999887
Q ss_pred HHHhhhCCCC---------Cchhccccccc----------ccccceEEEEecceEEecCCHHHHHHHHH
Q 017030 235 NLLRWRFPTA---------NDFGSEIIPAS----------ANEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (378)
Q Consensus 235 ~~l~~~~~~~---------~~~~~~~l~~l----------~~~~~i~~~~~~~~~~~i~t~~~~~~a~~ 284 (378)
+.+++..+.. .....+.++.+ -+..++.+++++++|.|+||++++.+...
T Consensus 199 ~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~~ 267 (268)
T d2cu2a2 199 ELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (268)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHhc
Confidence 6665543321 01111222221 13467999999999999999999988753
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.97 E-value=3.1e-30 Score=225.38 Aligned_cols=220 Identities=16% Similarity=0.211 Sum_probs=160.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++|+|||||||.||||+|+|...||||+||+|+ |||+|+++.|.++|+++|+|+++|..+++. ++.+.+ +
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i~-~~~~~~--------~ 71 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFD-YLKEKY--------G 71 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGT-HHHHHH--------C
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhhh-hhhhhc--------c
Confidence 689999999999999999999999999999999 999999999999999999999999888874 554433 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++...+.. ..||+++++.+.+.++ ++|++.++|.++...+.+.+ . ...++....
T Consensus 72 ---i~i~~~~~~~-------~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~----~---~~~~~~~~~ 127 (229)
T d1jyka_ 72 ---VRLVFNDKYA-------DYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL----T---RSTYFSVYR 127 (229)
T ss_dssp ---CEEEECTTTT-------TSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC----C---SEEEEECEE
T ss_pred ---cccccccccc-------ccccccccccchhhhc-------ccccccccccccccchhhhh----h---ccccceeee
Confidence 2233322322 3699999999987774 67877777666554443221 1 223333333
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHH---hhhC--
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRF-- 241 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l---~~~~-- 241 (378)
.+ +..++.+..+++++|..+.++|.. .+..+|+|+|++...+.+. ++..
T Consensus 128 ~~--~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 181 (229)
T d1jyka_ 128 ED--CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVS 181 (229)
T ss_dssp SS--CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ee--ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcc
Confidence 33 456788888899999999988753 3467899999987654332 2211
Q ss_pred CC-CCchhcccccccccccceEEEEecc-eEEecCCHHHHHHHHHhc
Q 017030 242 PT-ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 242 ~~-~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~ 286 (378)
.. ...+..+.+...+.+..++++...+ .|.+|+|++||.+|+..+
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 182 GEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 11 1223344566677788898888876 599999999999998754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=3.7e-27 Score=207.99 Aligned_cols=232 Identities=18% Similarity=0.224 Sum_probs=174.7
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCce
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (378)
.|||||||.||||+| +.||||+||+|+ |||+|+++.+.++|+++++|++++..+.+..+..... .
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~~------~----- 67 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQT------E----- 67 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTTS------E-----
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhccccc------c-----
Confidence 699999999999998 579999999999 9999999999999999999999998877766643211 1
Q ss_pred EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe-cCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 90 i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~-~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
. ... .. +.|+.+++..+...+... ..+.+++..+|.++. .++..++++|.+.+..+++...+...
T Consensus 68 ~-~~~-~~---------~~g~~~~~~~a~~~l~~~---~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 133 (250)
T d1g97a2 68 F-VTQ-SE---------QLGTGHAVMMTEPILEGL---SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN 133 (250)
T ss_dssp E-EEC-SS---------CCCHHHHHHTTHHHHTTC---CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC
T ss_pred c-ccc-cc---------ccccchHHHHHHHhhhcc---cCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc
Confidence 1 111 11 258999999998888642 134555555555554 45999999999999999998888765
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~ 245 (378)
+..+|.+..+..+.+..+.++++..... ...++..+|+|+|+...+...++..... ..
T Consensus 134 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~ 194 (250)
T d1g97a2 134 --PFGYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGE 194 (250)
T ss_dssp --CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCS
T ss_pred --cCCCceEEEeeceEEEEeeccccccccc-----------------cccceeeeeeeecchHHHHHHHHHhccCcchhh
Confidence 5678888888888999999887654211 1235789999999998887776543221 22
Q ss_pred chhcccccccccc-cceEEEEecceEEe--cCCHHHHHHHHHhcccC
Q 017030 246 DFGSEIIPASANE-QFLKAYLFNDYWED--IGTIRSFFEANLALTAH 289 (378)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~~~~~~--i~t~~~~~~a~~~~l~~ 289 (378)
.+..++++.+++. .+|.++.++++|.+ |+|++|+..|+..+.++
T Consensus 195 ~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~ 241 (250)
T d1g97a2 195 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 241 (250)
T ss_dssp CCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence 3345566666654 58999999999966 78999999998877643
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.3e-24 Score=191.40 Aligned_cols=231 Identities=19% Similarity=0.224 Sum_probs=157.9
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+.|++||||||.||||+| ++||||+||+|+ |||+|+++.+...|+++|+|++++..+.+.++.....
T Consensus 1 ~~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~~~--------- 67 (248)
T d2oi6a2 1 NAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDN--------- 67 (248)
T ss_dssp CCEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCCTT---------
T ss_pred CCceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeeccccc---------
Confidence 369999999999999997 589999999999 9999999999999999999999998877766642211
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEEEee
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~~~~ 165 (378)
...+.. . .+.|+++++..+...+.. ..++++..+|..+... ....+. +.......+++..+
T Consensus 68 --~~~~~~---~-------~~~g~~~~~~~~~~~i~~-----~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (248)
T d2oi6a2 68 --LNWVLQ---A-------EQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLR-DAKPQGGIGLLTVK 129 (248)
T ss_dssp --EEEEEC---S-------SCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHH-HHCCTTSEEEEEEE
T ss_pred --cccccc---c-------cCcccHHHHHhhhhhhcc-----ccceeeecCccccccchhHHHHH-HHhhccccceeEEE
Confidence 122221 1 136999999999888865 5788888888855332 222221 22344455555555
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC--
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-- 243 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-- 243 (378)
..+ +..++.+..+ ++....+.+++...... ....+..+|.|.|+.+.|.+.++.....
T Consensus 130 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 189 (248)
T d2oi6a2 130 LDD--PTGYGRITRE-NGKVTGIVEHKDATDEQ-----------------RQIQEINTGILIANGADMKRWLAKLTNNNA 189 (248)
T ss_dssp CSC--CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCCCST
T ss_pred ecC--Cccccccccc-cCccceeeeccCCChhh-----------------hhhhhhhhhhhccchHHHHHHHHHhhcccc
Confidence 554 5567776664 45555555433321110 1235678999999998887766543221
Q ss_pred C-Cchhcccccccccc-cceEEEEecceEE--ecCCHHHHHHHHHhccc
Q 017030 244 A-NDFGSEIIPASANE-QFLKAYLFNDYWE--DIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~-~~~~~~~l~~l~~~-~~i~~~~~~~~~~--~i~t~~~~~~a~~~~l~ 288 (378)
. ..+..++++.+++. .++.++..+++|. .|+||+|+..|++.+.+
T Consensus 190 ~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 190 QGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 1 11234566666654 5788888887774 48899999999886654
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=4.4e-18 Score=147.16 Aligned_cols=218 Identities=13% Similarity=0.100 Sum_probs=131.8
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++.|||||||.||||+ .+.||+|+||+|+ |||+|+++.+.++ ++++|+|++++....+.+......
T Consensus 2 M~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~-------- 69 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH-------- 69 (225)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGC--------
T ss_pred CCEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhhccc--------
Confidence 67899999999999997 6789999999999 9999999999887 689999999876655443332211
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~ 163 (378)
..+.+.. +. .++.++++.+...+.+ .+.+++..+|. +...+ +..++..... +....+..
T Consensus 70 --~~v~~~~--~~---------~~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~~~~-~~~~~v~~ 130 (225)
T d1i52a_ 70 --PQITVVD--GG---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSET-SRTGGILA 130 (225)
T ss_dssp --TTEEEEE--CC---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGT-CSSCEEEE
T ss_pred --ccccccc--CC---------cchhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhhhhh-cccccccc
Confidence 1122221 11 2467889888888865 47788888886 44444 5555554443 33444555
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+..+. . ......++......++.. .....+.+.|..+.+...+++....
T Consensus 131 ~~~~d~----~-~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~ 180 (225)
T d1i52a_ 131 APVRDT----M-KRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNE 180 (225)
T ss_dssp EECCSC----E-EEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHT
T ss_pred cceeec----c-chhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhc
Confidence 544331 1 111122333333332221 1233467778888776666543221
Q ss_pred CCchhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 244 ANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 244 ~~~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
... ..|....+. .+.++..+..+..-..|+||+|+..|+..+
T Consensus 181 ~~~-~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 181 GAT-ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp TCC-CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCC-CCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 111 122222222 245666655432335699999999997654
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.68 E-value=1.7e-16 Score=137.07 Aligned_cols=217 Identities=12% Similarity=0.094 Sum_probs=121.5
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
.+.+||||||.|+||+ .+.||+|+||+|+ |||+|+++.+.++ .+++|+|++++....+.+.+... +.
T Consensus 4 ~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~--------~~ 71 (226)
T d1w77a1 4 SVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEES--------ID 71 (226)
T ss_dssp CEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTS--------CS
T ss_pred ceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhhccccc--------cc
Confidence 4789999999999997 5789999999999 9999999999887 46888888865443333222111 11
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
. .+.+.. .. ..+.++++.++..+... .+.+++..||. ++..+ +..+++.+.+.+..+ ...
T Consensus 72 ~-~~~~~~--gg---------~~r~~sv~~~l~~~~~~----~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i--~~~ 133 (226)
T d1w77a1 72 V-DLRFAI--PG---------KERQDSVYSGLQEIDVN----SELVCIHDSARPLVNTEDVEKVLKDGSAVGAAV--LGV 133 (226)
T ss_dssp S-EEEEEC--CC---------SSHHHHHHHHHHTSCTT----CSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEE--EEE
T ss_pred c-cccccc--cc---------chhhhhhhhhHhhhccc----cccceecccccccccHHHhhhhhhhhhccCcee--ecc
Confidence 1 133321 11 12568888888777532 47788889998 55544 778888776665432 222
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
+..+. ..+ ...++......+.. ......+-++|+.+.|.+.++......
T Consensus 134 ~~~d~--~~~----~~~~~~~~~~~~r~-------------------------~~~~~~~p~~f~~~~l~~~~~~~~~~~ 182 (226)
T d1w77a1 134 PAKAT--IKE----VNSDSLVVKTLDRK-------------------------TLWEMQTPQVIKPELLKKGFELVKSEG 182 (226)
T ss_dssp ECCSC--CCC----BCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSC
T ss_pred ccccc--eEE----EccCCceeecccch-------------------------hhhHHHHHHhHhhHHHHHHHHHHHhcC
Confidence 22221 101 01222222221111 123345778999888876665432221
Q ss_pred Cchhccccccc-ccccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 245 NDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 245 ~~~~~~~l~~l-~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
..+ .|....+ ..+.++..+..+..-..|+||+|+..|+..+
T Consensus 183 ~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 183 LEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp CCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 111 1211111 1255676655443335699999999997655
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.64 E-value=2.5e-15 Score=129.60 Aligned_cols=219 Identities=11% Similarity=0.108 Sum_probs=117.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
++..|||||||.|+||. .+.||+|++|+|+ |||+|+++.+.+++ ++.|+|++++. +.+.+++...+.
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~~------- 69 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAFP------- 69 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHCT-------
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhccccc-------
Confidence 56779999999999996 6789999999999 99999999999876 46666666543 344455544321
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~ 163 (378)
....+..... ....+...++......... ...+.+++.+||. ++..+ +..+++.+...+...++.
T Consensus 70 --~~~~~~~g~~-------~~~~s~~~~l~~~~~~~~~---~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~- 136 (226)
T d1vgwa_ 70 --QVRVWKNGGQ-------TRAETVRNGVAKLLETGLA---AETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILA- 136 (226)
T ss_dssp --TSEEECCCCS-------SHHHHHHHHHHHHHHHSSS---CTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEE-
T ss_pred --ceeecccccc-------ccchhhhHHHHHHHHhccc---ccccceeecccccccCcHHHHHHHHhhhcccccceeec-
Confidence 1122221111 0011233333333222211 1246788888987 55554 788888887776665443
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+..+ ..... +++.+....++.... ....-..|..+.|.+.+... .
T Consensus 137 ~~~~~------~~~~~-~~~~i~~~~~r~~~~-------------------------~~~~p~~f~~~~l~~~~~~~--~ 182 (226)
T d1vgwa_ 137 VPVAD------TLKRA-ESGQISATVDRSGLW-------------------------QAQTPQLFQAGLLHRALAAE--N 182 (226)
T ss_dssp EECCS------CEEEE-SSSBEEEEECCTTEE-------------------------EEEEEEEEEHHHHHHHHHC----
T ss_pred ccccc------cceec-cCCeEEeccchHHHH-------------------------HHHhhhcccHHHHHHHHHHh--h
Confidence 33221 22233 456776665544321 11233566777776555432 1
Q ss_pred CCchhccccccc-ccccceEEEEecceEEecCCHHHHHHHHHh
Q 017030 244 ANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 244 ~~~~~~~~l~~l-~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~ 285 (378)
...+ .|....+ ..+.++..+.-+.....|+||+|+..|...
T Consensus 183 ~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 183 LGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp --CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 1111 1211111 125667766655455779999999988654
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=5.8e-15 Score=126.87 Aligned_cols=209 Identities=16% Similarity=0.202 Sum_probs=123.7
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCce
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (378)
|||||||.|+||+ .+.||+|+||+|+ |||+|+|+.+.++ ++++|+|+++..... ++.... .. ...
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~~---~~~~~~--~~-----~~~ 71 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFE---VVEKRV--FH-----EKV 71 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHH---HHHTTC--CC-----TTE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhhh---HHHhhh--cc-----ccc
Confidence 7999999999997 6789999999999 9999999999987 678998888654332 222221 11 112
Q ss_pred EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEeecC
Q 017030 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 90 i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
+.+.... .+...++..+...+... ..+.++++.||. +...+ +..+++.+.+... .+...+..
T Consensus 72 ~~~~~~~-----------~~~~~s~~~~~~~~~~~---~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~ 135 (221)
T d1vpaa_ 72 LGIVEGG-----------DTRSQSVRSALEFLEKF---SPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNS 135 (221)
T ss_dssp EEEEECC-----------SSHHHHHHHHHHHHGGG---CCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECC
T ss_pred ccccccc-----------ccccchHHHHHHHHHhc---CCCcEEEeccccccccHHHHHhhhhhhccccc--cccccccc
Confidence 3333211 13445555555555321 258899999998 44555 6788887765443 22333322
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCch
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (378)
+ .+...+ +++...+ .+. ..+...+-+.|..+.+....++. ..+
T Consensus 136 d------~~~~~~-~~~~~~~-~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~----~~~ 178 (221)
T d1vpaa_ 136 D------ALVRVE-NDRIEYI-PRK-------------------------GVYRILTPQAFSYEILKKAHENG----GEW 178 (221)
T ss_dssp S------EEEEEE-TTEEEEE-CCT-------------------------TEEEEEEEEEEEHHHHHHHHTTC----CCC
T ss_pred c------eeEeec-Cccceec-chH-------------------------HHHHhhhhhhhhHHHHHHHHHhC----CCC
Confidence 2 122221 2222222 111 12345677788888776654332 111
Q ss_pred hccccccccc-ccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 248 GSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 248 ~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
.|....+.. +.++..+..+.....|+||+|+..|...+.
T Consensus 179 -tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk 218 (221)
T d1vpaa_ 179 -ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 218 (221)
T ss_dssp -SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred -ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHh
Confidence 222222222 456766665444457999999988876554
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.51 E-value=6.1e-13 Score=115.81 Aligned_cols=237 Identities=17% Similarity=0.217 Sum_probs=144.9
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
..|||+|.|.++|+. -|+|.+|+|+ |||+|+++.+.++++++|+|.+. .+.+.++..+. + ..
T Consensus 2 ~i~iIpAR~gSkrip------~KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~~~---g------~~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEAA---G------GE 63 (246)
T ss_dssp CEEEEECCCCCC--C------CTTTCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT---T------CE
T ss_pred EEEEEecCCCCcCCC------CchhhhcCCc-cHHHHHHHHHHHcCCCcEEEEec--Cccccchhhcc---c------cc
Confidence 468999999999982 3999999999 99999999999999999999884 45566665432 1 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-EecC-HHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~d-~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.+...... .|+..... +...... ...+.++.+.||.. .... +..+++.+.....+....+.+.
T Consensus 64 -v~~~~~~~~---------~~~~~~~~-~~~~~~~---~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (246)
T d1vh1a_ 64 -VCMTRADHQ---------SGTERLAE-VVEKCAF---SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 129 (246)
T ss_dssp -EEECC--------------CHHHHHH-HHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEEC
T ss_pred -ceeeccccc---------ccchHHHH-HHHhhcc---cccceeeeeccccccchhhHHHHHhhhhcccccccccccccc
Confidence 222221111 24544444 3333321 12568899999994 3433 7888888888877766666655
Q ss_pred CCCC---CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 167 DDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 167 ~~~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.... ..+...+..+.+|.+..+.+.+.......... ..+.....++...|+|+|+++.|...... .+.
T Consensus 130 ~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s 200 (246)
T d1vh1a_ 130 HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE--------GLETVGDNFLRHLGIYGYRAGFIRRYVNW-QPS 200 (246)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSS--------CCCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCC
T ss_pred cchhcccCCCcceeeecccCcccccccccchhhhhhhhh--------hhhccchhhheecceeeechhhhhhhccC-CCC
Confidence 4311 12233456677889988877655432110000 00111233566889999999998655322 121
Q ss_pred CCchhc--ccccccccccceEEEEecce-EEecCCHHHHHHHHHhc
Q 017030 244 ANDFGS--EIIPASANEQFLKAYLFNDY-WEDIGTIRSFFEANLAL 286 (378)
Q Consensus 244 ~~~~~~--~~l~~l~~~~~i~~~~~~~~-~~~i~t~~~~~~a~~~~ 286 (378)
..+..+ +.++.+-.+.++.++..+.. ..+|+|++||..|...|
T Consensus 201 ~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 201 PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred hHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 111111 22333334668888887654 67999999999987654
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=1.7e-15 Score=131.23 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=88.1
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|+..|||||||.|+||++++. .||+|+||+|+ |||+|+++.+..+|+++|+|++++.....
T Consensus 1 M~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~----------------- 61 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA----------------- 61 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC-----------------
T ss_pred CCceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce-----------------
Confidence 467899999999999999884 58999999999 99999999999999999988876543210
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
..... .. ..|+.++++.+.+.++ +.+++++||. +++.+ +..+++.+. +.++.+.+.
T Consensus 62 --~~~~~---~~--------~~~~~~~v~~al~~~~-------~~~lv~~~D~P~i~~~~i~~l~~~~~--~~~~~~~~~ 119 (231)
T d2dpwa1 62 --PALTL---PD--------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLDKAP--EAALVYPIV 119 (231)
T ss_dssp --CSEEE---CC--------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHHHCC--SCSEEEEEE
T ss_pred --eeeec---cc--------chHHHHHHHHHHHhhc-------CceEEeeCCCccCCHHHHHHHHHHhh--hcCceEEEE
Confidence 01110 01 2488999999988763 7899999999 55555 777776543 344455444
Q ss_pred ec
Q 017030 165 PM 166 (378)
Q Consensus 165 ~~ 166 (378)
+.
T Consensus 120 ~~ 121 (231)
T d2dpwa1 120 PK 121 (231)
T ss_dssp EH
T ss_pred ec
Confidence 43
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.48 E-value=1.1e-12 Score=114.63 Aligned_cols=242 Identities=17% Similarity=0.201 Sum_probs=146.7
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
..|||+|.|.++|+. .|.|.+|+|+ |||+|+++.+.++++++|+|++. .+++.+...+. + ..
T Consensus 2 ~~~iIpAR~gSkRlp------~Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd--~~~i~~~~~~~---~------~~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATD--NENVADVAKSF---G------AE 63 (255)
T ss_dssp CEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT---T------CE
T ss_pred EEEEEecCCCCCCCC------CchhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcC--Ccccchhhhhh---c------cc
Confidence 468999999999982 3999999999 99999999999999999888874 33444443321 1 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.+..... ..|+..+...+...... ..+.++.+.||. +.+.. +..+++.+.......+......
T Consensus 64 -~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (255)
T d1vica_ 64 -VCMTSVNH---------NSGTERLAEVVEKLAIP----DNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 129 (255)
T ss_dssp -EEECCCSS---------CCHHHHHHHHHHHTTCC----TTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -cceeeecc---------CCcchhhHHHHHHhhcc----CCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeec
Confidence 22222111 13555555444333321 246788899999 44433 7888888888777777666654
Q ss_pred CCC---CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 167 DDS---RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 167 ~~~---~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
... ..........++++.+..+.+.+............ ...............|+|+|++..+...... .+.
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~ 204 (255)
T d1vica_ 130 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQ----DVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APT 204 (255)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCS----CGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCC
T ss_pred cchhhccCccceeeeeccCCcccccccccccccchhhhhcc----chhhcccccchheeeeeecccHHHHhhhhcc-CCC
Confidence 321 12334455667788888887766543211100000 0001111233456789999999988665332 121
Q ss_pred CCchhc--ccccccccccceEEEEecc-eEEecCCHHHHHHHHHhcc
Q 017030 244 ANDFGS--EIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 244 ~~~~~~--~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~l 287 (378)
..+..+ +.++.+-.+.+|..+..+. .+.||+|++||..|...+.
T Consensus 205 ~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 205 QLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 111011 1223333466788877765 4789999999999987664
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.46 E-value=2.5e-12 Score=111.68 Aligned_cols=230 Identities=15% Similarity=0.207 Sum_probs=140.0
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+..|||+|.|.++|+. .|+|++|+|+ |||+|+++.+.+. ++++|+|++.. +.+.+.... + +
T Consensus 2 k~i~iIpAR~~SkRl~------~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~~~-~--------~ 63 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRLP------GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA-F--------G 63 (245)
T ss_dssp CEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH-T--------T
T ss_pred CEEEEEcCCCCCcCCC------CccccccCCc-cHHHHHHHHHHhCCCCCeEEEeccc--ccchhhhhh-c--------C
Confidence 5689999999999983 4999999999 9999999999886 67888777743 334433322 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-EecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.. +.+.. .+. .++.+....+...+. .+.++.+.+|.. .+.+ +..+++.+............
T Consensus 64 ~~-~~~~~-~~~---------~~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~ 126 (245)
T d1h7ea_ 64 GK-AIMTR-NDH---------ESGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126 (245)
T ss_dssp CE-EEECC-SCC---------SSHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ce-EEEec-Ccc---------ccccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhcccccccccccccc
Confidence 11 11111 111 245566667766665 478888999994 3433 77888877765544333332
Q ss_pred e-cCC-C-CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 165 P-MDD-S-RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 165 ~-~~~-~-~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
. ... . .............+....+...+........ ........|+|.|+++.|..... ..
T Consensus 127 ~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~l~~~~~-~~ 190 (245)
T d1h7ea_ 127 HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE---------------KARYLKHVGIYAYRRDVLQNYSQ-LP 190 (245)
T ss_dssp EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGG---------------GCCEEEEEEEEEEEHHHHHHGGG-SC
T ss_pred cccccccccCCcceeeccchhhhhhhhhhhhhhhhhccc---------------ccccceeeeeEEeeecccccccc-cc
Confidence 2 211 0 0112233444455666777665543321110 12345678999999998865532 11
Q ss_pred CCCCchhc--ccccccccccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 242 PTANDFGS--EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 242 ~~~~~~~~--~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
+...+..+ +.++.+-.+.++.++..++.+.+|+|++||..|...+.+
T Consensus 191 ~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~ 239 (245)
T d1h7ea_ 191 ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred CChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 21111111 123322346789888888888899999999999776543
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.27 E-value=2.9e-11 Score=103.21 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=131.4
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+--|||+|.|.++|+. .|+|++|+|+ |||+|+++.+.+++ +++|+|.+ ..+.+.+.+.. + +
T Consensus 4 ~~iaiIpar~~S~R~p------~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~t--d~~~i~~i~~~-~--------~ 65 (225)
T d1eyra_ 4 QNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVST--DGGLIAEEAKN-F--------G 65 (225)
T ss_dssp EEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-T--------T
T ss_pred CEEEEEccCCCCcCCC------CccccccCCe-EHHHHHHHHHHHcCCCceEEEee--ccchhhhhhhh-h--------c
Confidence 3468999999999983 5999999999 99999999999987 57777766 34455554433 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.. +......... ...++.+.++.+.+.+... .+.++.++||. +.+.. +.++++.+.+.+.+..+.+.
T Consensus 66 ~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~----~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~ 134 (225)
T d1eyra_ 66 VE-VVLRPAELAS------DTASSISGVIHALETIGSN----SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC 134 (225)
T ss_dssp CE-EEECCHHHHS------TTCCHHHHHHHHHHHHTCC----SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred ce-eeeecccccc------ccccchhhccccccccccc----cceEEEeeccccccccccccccceeeccccccccceee
Confidence 11 1111100000 0124667777777666431 57899999999 55544 88888888777776555555
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
+... ...+. +...+++....+........ ..+.....+..+.++|+++++.+... ..
T Consensus 135 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~y~~~g~iy~~~~~~l~~~-----~~- 191 (225)
T d1eyra_ 135 PMEH--HPLKT-LLQINNGEYAPMRHLSDLEQ--------------PRQQLPQAFRPNGAIYINDTASLIAN-----NC- 191 (225)
T ss_dssp ECSS--CTTSC-EEECSSSCEEESSCGGGGTS--------------CGGGSCCEEEEEEEEEEEEHHHHHHH-----TS-
T ss_pred cccc--ccccc-cccccccccccccccccccc--------------ccccCcceeeecceeEEeeHHHHHHc-----CC-
Confidence 4432 12233 33334566655543322111 01111123567889999999977532 00
Q ss_pred CchhcccccccccccceEEEEecc-eEEecCCHHHHHHHHHhc
Q 017030 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~ 286 (378)
.-..++..+..+. ...||+|++||..|...+
T Consensus 192 -----------~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 192 -----------FFIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp -----------SCCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred -----------ccCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 0123444555443 357999999999987544
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=3.2e-12 Score=106.31 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=75.1
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|..+.|||||||.|+||+ ..||+|+|++|+ |||+|+++.+... +.+|+|+++...+... .. +
T Consensus 1 M~~i~~iILAgG~ssRmG----~~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~~-----~~----~--- 62 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIYQ-----AS----G--- 62 (188)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHHH-----TT----S---
T ss_pred CCceeEEEEcCCCCcCCC----CCCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhhh-----hc----C---
Confidence 566889999999999996 248999999999 9999999998876 5678777765543221 11 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHH
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~ 150 (378)
+.+..+.... ..|...++..+..... .+.+++++||+ +...+ +..+++
T Consensus 63 ----~~v~~d~~~~-------~~~~~~g~~~~~~~~~------~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ----LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ----CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ----CCcccccccc-------ccchhHHHHHHHHhcc------cceEEEeccCCCCCCHHHHHHHHH
Confidence 1122111111 1356666766665554 48899999999 55666 455544
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=5.6e-12 Score=88.36 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=54.3
Q ss_pred EEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEe
Q 017030 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRI 364 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~ 364 (378)
+..++.|++++.| .++.++ ++.||+||.|| +|.|+||.||++++|++++.|++|+|+++++|+
T Consensus 11 I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IG 76 (78)
T d1fxja1 11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIG 76 (78)
T ss_dssp EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEES
T ss_pred EeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEEC
Confidence 5566777777777 566776 68899999999 899999999999999999999999999999886
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.22 E-value=2.9e-12 Score=107.78 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=82.6
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
+.+||||||.|+||+ .+.||+|++++|+ |||+|+++.+.+.. +++|+|++. ..+ +++. +...
T Consensus 2 is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~-~~~----~~~~---~~~~----- 64 (205)
T d1w55a1 2 MSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NIT----YMKK---FTKN----- 64 (205)
T ss_dssp EEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHH----HHHT---TCSS-----
T ss_pred eEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhccccccccccc-ccc----cccc---cccc-----
Confidence 678999999999997 5789999999999 99999999998864 677766654 322 2221 1111
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~ 165 (378)
+.++.. . ....++++.++..++ .+.+++..||. ++..+ +..+++.+.+ .++.+.+.+
T Consensus 65 --~~~v~G--g---------~~r~~Sv~~gl~~~~------~~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~~ 123 (205)
T d1w55a1 65 --YEFIEG--G---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPALK 123 (205)
T ss_dssp --SEEEEC--C---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEEC
T ss_pred --cccccc--c---------cchhhhhhhhhhhhh------hcceeeeccCcccCcHHHHHHHHhhhhc--ccccccccc
Confidence 222211 0 134678888887775 47888899998 66655 6777775543 345555555
Q ss_pred cC
Q 017030 166 MD 167 (378)
Q Consensus 166 ~~ 167 (378)
..
T Consensus 124 ~~ 125 (205)
T d1w55a1 124 VA 125 (205)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.10 E-value=2.4e-09 Score=97.39 Aligned_cols=258 Identities=10% Similarity=0.097 Sum_probs=153.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeec-Ceeeeeeeehhhhhh----cCCc-EEEEEeec-ChhhHHHHHHhhcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCIN----SGIN-KVYILTQY-NSASLNRHLARAYN 78 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~-g~~pli~~~l~~l~~----~gi~-~I~iv~~~-~~~~i~~~l~~~~~ 78 (378)
..++.+|+||||.||||+ .+.||+++||+ |+ ++++..++++.+ +|.. .++|.+++ ..+.+.+++.++..
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~-t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~ 147 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGL-TFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTN 147 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTE-EHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTT
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCC-CHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhcc
Confidence 367899999999999996 77999999997 56 999999988764 3443 56777754 45678888876543
Q ss_pred CCCCccc-CCceEE--------EeccccCCCcCCC-ccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEecCHH
Q 017030 79 YGSGVTF-GDGCVE--------VLAATQTPGEAGK-RWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYM 146 (378)
Q Consensus 79 ~~~~~~~-~~~~i~--------i~~~~~~~~~~~~-~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~~d~~ 146 (378)
++....+ ....+- .+.... ..... -.|.|.|+....... .+++....+.+.+.+.+.|.+....--
T Consensus 148 fg~~i~~f~Q~~~P~~~~~~~~~~~~~~--~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp 225 (378)
T d2icya2 148 SNVDIHTFNQSKYPRVVADEFVPWPSKG--KTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDL 225 (378)
T ss_dssp SSSCEEEEECCCEECEETTTTEEGGGGT--CCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCH
T ss_pred CCCceEEEEecccccccCCccccccccc--CCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccch
Confidence 3322111 000000 111000 00111 125588877765432 122222234689999999997654445
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEE
Q 017030 147 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 147 ~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
.++.+|.++++++++-+.+...+....-..+..|..-+++++.|.|...... ..-. ......+++.+
T Consensus 226 ~~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~-~~~~------------~~~~~~N~nn~ 292 (378)
T d2icya2 226 TILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNE-FKSI------------EKFKIFNTNNL 292 (378)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHH-HHSS------------SSCCEEEEEEE
T ss_pred HHHHHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhh-hcCC------------cCcceeeeeee
Confidence 7788999999999998887654322333334454444667777776543210 0000 11235799999
Q ss_pred EEeHHHHHHHHhhhCCCC-----------------CchhcccccccccccceEEEEec-ceEEecCCHHHHHHHHHh
Q 017030 227 LFKKEILLNLLRWRFPTA-----------------NDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 227 ~~~~~~l~~~l~~~~~~~-----------------~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~ 285 (378)
+|+-+.++++++...... ..+..+.++.. .+..++..+ ..|..+.++.|++.+..+
T Consensus 293 ~~~l~~l~~~~~~~~~~l~~~~~~K~~~~~~~iqlE~~i~d~~~~~---~~~~~~eV~R~rF~PvKn~sDll~~~sd 366 (378)
T d2icya2 293 WVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFF---DNAIGVNVPRSRFLPVKASSDLLLVQSD 366 (378)
T ss_dssp EEEHHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBCCGGGGGGGS---TTCEEEECCGGGCCBCCSHHHHHHHHST
T ss_pred eeeHHHHHHHHhhccCCCceEecCcCCCCCCeeehhhHHHHHHHhC---CCcEEEEecccccCCCCChHHHHHHhhc
Confidence 999999988876432111 11122222221 233444433 358889999998776544
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=6.5e-10 Score=94.87 Aligned_cols=217 Identities=13% Similarity=0.151 Sum_probs=125.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
.++.|||+|.|.++||. -|+|++|+|+ |||+|+++++.+++ +++|+|.+. .+.+.+...+.
T Consensus 2 ~ki~aiIpaR~~S~Rlp------~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~~~--------- 63 (228)
T d1qwja_ 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQF--------- 63 (228)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHT---------
T ss_pred CCEEEEeccCCCCCCCC------CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhhhc---------
Confidence 57899999999999993 5999999999 99999999999876 577777663 33454444321
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~ 163 (378)
+.. +.........+ .....+.+..+...... .+.++++.+|. +.+.. +.++++.+...+.+..+.+
T Consensus 64 ~~~-~~~~~~~~~~~------~~~~~~~i~~~~~~~~~-----~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~ 131 (228)
T d1qwja_ 64 GAQ-VHRRSSETSKD------SSTSLDAIVEFLNYHNE-----VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (228)
T ss_dssp TCE-EEECCGGGSST------TCCHHHHHHHHHTTCTT-----CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred Ccc-ccccccccccc------cchhhhhhhhccccccc-----cceeeeecccccccCchhhhhhhhhhhccCccccccc
Confidence 111 11111111100 12455666665544432 57888889998 44444 8999998888888876666
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.... .+..+.....+........+... ...+.....+..+.++|+++.+++.. .
T Consensus 132 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~qd~~~~y~~ng~~~~~k~~~~~~---~---- 187 (228)
T d1qwja_ 132 VRRHQF---RWSEIQKGVREVTEPLNLNPAKR--------------PRRQDWDGELYENGSFYFAKRHLIEM---G---- 187 (228)
T ss_dssp EEECCC---EECCCCSSTTCCCCBSSSBTTBC--------------CCTTTSCCEEEEEEEEEEEEHHHHHT---T----
T ss_pred cccccc---cchhhhhhccccccchhhhhhhc--------------cccccccceeeeeeEEEEEeHHHHhh---C----
Confidence 554321 11111111111100000000000 00000112245677788888776631 1
Q ss_pred CCchhcccccccccccceEEEEecc-eEEecCCHHHHHHHHHhccc
Q 017030 244 ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~l~ 288 (378)
. ..+.+...|..+. ...||+|++|+..|.+.+.+
T Consensus 188 --~---------~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 188 --Y---------LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp --C---------SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred --C---------cCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 0 1234566666554 35799999999999877653
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.06 E-value=1.5e-10 Score=90.55 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=59.3
Q ss_pred ccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCC-------------------CEECCCCEEeeeeeCCCCeE
Q 017030 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIR-------------------SRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~-------------------~~Ig~~~~i~~sIi~~~~~~ 363 (378)
.++.|+++|.|+++.+++|+||++|.|+ ++.|.+|+++.+ ++||++|+|.+|+|+++|+|
T Consensus 13 ~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~I 92 (135)
T d1yp2a1 13 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI 92 (135)
T ss_dssp EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred EeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEE
Confidence 4577889998888888899999999999 899998888765 68999999999999999999
Q ss_pred eeeeeeeee
Q 017030 364 IWKCSSLCS 372 (378)
Q Consensus 364 ~~~~~~~~~ 372 (378)
+++|.+..+
T Consensus 93 G~g~~i~~~ 101 (135)
T d1yp2a1 93 GDNVKIINK 101 (135)
T ss_dssp CTTCEECCS
T ss_pred CCCcEECCC
Confidence 999988543
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.9e-10 Score=79.43 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=48.1
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEe
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~ 375 (378)
+..||++|.|+ ++.|. ++.||+||+||+||.|++|.|+++++|+.+|.+.+++|.
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig 70 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEEC
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEEC
Confidence 45677777777 67776 688999999999999999999999999999999998874
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.01 E-value=1.8e-10 Score=90.09 Aligned_cols=67 Identities=34% Similarity=0.428 Sum_probs=58.9
Q ss_pred CCCceeeCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCC-------------------CeEeeeeee
Q 017030 309 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPL-------------------CRRIWKCSS 369 (378)
Q Consensus 309 ~~~~~i~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~-------------------~~~~~~~~~ 369 (378)
.||+++.++.++||+||+||.|+++.+++|+||++|+||+++.|+++.++++ ++|+++|.+
T Consensus 2 lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I 81 (135)
T d1yp2a1 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHI 81 (135)
T ss_dssp CCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEE
T ss_pred CCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEe
Confidence 4788888899999999999999888899999999999999999999988766 578888888
Q ss_pred eeeeEe
Q 017030 370 LCSVIC 375 (378)
Q Consensus 370 ~~~~~~ 375 (378)
..++|+
T Consensus 82 ~~~iIg 87 (135)
T d1yp2a1 82 KRAIID 87 (135)
T ss_dssp ESEEEC
T ss_pred ccceec
Confidence 887775
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.57 E-value=8.7e-08 Score=80.31 Aligned_cols=36 Identities=6% Similarity=-0.076 Sum_probs=20.4
Q ss_pred eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 337 HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
++.||++|+||.++.|. +|.|++++.|+.++.+..+
T Consensus 103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~ 139 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKS 139 (210)
T ss_dssp SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE
T ss_pred ceeeccccccccccccccCCcccCCcEeeCCcccccc
Confidence 35566666666666664 3566666666555554443
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.42 E-value=1.9e-07 Score=77.12 Aligned_cols=51 Identities=27% Similarity=0.223 Sum_probs=22.2
Q ss_pred eeeEEecCcEEcceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 320 VDSIISHGSFITSSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 320 ~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
+++.||+||.|.++.+.++.++++++||+++.+.+ +.++.+++++..+.+.
T Consensus 48 ~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~~~~~i~~~~~~~ 99 (196)
T d1g97a1 48 VDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQVHIGNFVEVK 99 (196)
T ss_dssp ESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEE
T ss_pred eeeecccCccccccceeeccccCcceeecceecccccccccceeecccccce
Confidence 33444444444333334444444444554444432 4444444444444433
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.28 E-value=9.5e-07 Score=73.76 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=36.3
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
++.||++|.|| ++.|. .+.||++|.||.++.|.++.|++++.|+.++.+.+++
T Consensus 103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g~~ 157 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVT 157 (210)
T ss_dssp SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCE
T ss_pred ceeeccccccccccccccCCcccCCcEeeCCccccccccccCcEEecCcEecCcE
Confidence 46677777777 66665 4677777777777777777777777776666555544
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.25 E-value=1.8e-06 Score=71.03 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=55.3
Q ss_pred ccCCCC-cEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 295 FYDATK-PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 295 ~~~~~~-~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
+++|++ .|.+++.|++++.| .++.|. ++.||++|.|+ ++.|.+|.||+++.|... .+.++.+++++.|+..|.+.
T Consensus 3 ~i~P~s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~-~i~~~~~g~~~~Ig~~~~i~ 81 (196)
T d1g97a1 3 FVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNS-MIEESSVADGVIVGPYAHIR 81 (196)
T ss_dssp ESCGGGCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECSC-EEESCEECTTCEECSSCEEC
T ss_pred EeCCCeEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCcccccc-ceeeccccCcceeecceecc
Confidence 455544 36666777777777 455654 78999999999 899999999999998754 55666667777776666664
Q ss_pred ee
Q 017030 371 CS 372 (378)
Q Consensus 371 ~~ 372 (378)
..
T Consensus 82 ~~ 83 (196)
T d1g97a1 82 PN 83 (196)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.20 E-value=2.4e-06 Score=70.17 Aligned_cols=106 Identities=16% Similarity=0.047 Sum_probs=47.2
Q ss_pred eEEecCCHHHHHHHHHhcccC-CCCccccCCCCcEEccCCCC--CCcee-eCceee-eeEEecCcEEc-ceEEe-ec---
Q 017030 269 YWEDIGTIRSFFEANLALTAH-PPMFSFYDATKPIYTSRRNL--PPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HS--- 338 (378)
Q Consensus 269 ~~~~i~t~~~~~~a~~~~l~~-~~~~~~~~~~~~i~~~~~i~--~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~S--- 338 (378)
++.-++++..-.+....+.+. .....+++|++.+...+.++ +++.| +++.|. ++.||++|.|+ ++.|. ++
T Consensus 49 ~~iaIG~~~~R~~~~~~~~~~~~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig 128 (193)
T d3bswa1 49 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG 128 (193)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEEECCcHHHHHHHHHhhhhccccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecc
Confidence 345677776433443333332 22334566665555544442 23333 222221 23333333332 22221 22
Q ss_pred ---------eEcCCCEECCCCEE-eeeeeCCCCeEeeeeeee-eeeE
Q 017030 339 ---------VVGIRSRINANVHL-KVSPANPLCRRIWKCSSL-CSVI 374 (378)
Q Consensus 339 ---------iI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~-~~~~ 374 (378)
.+..+++||++|.| .+|.|.++++|+++|.+. +|||
T Consensus 129 ~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV 175 (193)
T d3bswa1 129 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL 175 (193)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEE
Confidence 23333445555555 335666666666666663 4443
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.16 E-value=3.7e-06 Score=78.57 Aligned_cols=216 Identities=18% Similarity=0.212 Sum_probs=122.1
Q ss_pred cceeEEEEcCCCCcccccccccCcccceee---cCeeeeeeeehhhhhhc----------CC-cEEEEEee-cChhhHHH
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINS----------GI-NKVYILTQ-YNSASLNR 71 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi---~g~~pli~~~l~~l~~~----------gi-~~I~iv~~-~~~~~i~~ 71 (378)
.++.+|+||||.||||+ ...||.++|| .|+ ++++..++.+.+. +. --++|.++ ...+.+.+
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 57889999999999997 7889999998 467 8999887776541 22 24667775 45567888
Q ss_pred HHHhhccCCCCcc----cCCceEEEeccccC-C-CcCC--CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEE
Q 017030 72 HLARAYNYGSGVT----FGDGCVEVLAATQT-P-GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLY 141 (378)
Q Consensus 72 ~l~~~~~~~~~~~----~~~~~i~i~~~~~~-~-~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~ 141 (378)
++.++..++-... |....+-.+..... . ...+ ...|.|.|+....... .+++....+.+.+.+.+.|.+.
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 8876532322110 00000110100000 0 0000 1124566655544332 2222222336899999999954
Q ss_pred e-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCC--EEEEEecCCccchhcccccchhccccccccccCc
Q 017030 142 R-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 218 (378)
Q Consensus 142 ~-~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (378)
. .---.++..+..+++++.+-+.+...+ ...-|.+.. .+|+ |+++.|-|..... ....++ ....
T Consensus 257 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~e~~G~l~~-~dg~~~vvEysel~~~~~~-~~~~~g----------~l~f 323 (501)
T d1jv1a_ 257 VKVADPRFIGFCIQKGADCGAKVVEKTNP-TEPVGVVCR-VDGVYQVVEYSEISLATAQ-KRSSDG----------RLLF 323 (501)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEE-ETTEEEEECGGGSCHHHHH-CBCTTS----------SBSS
T ss_pred ccccCHHHHHHHHhcccceeEEEEEcCCC-CcccceEEE-ECCeEEEEEeccCCHHHHh-hccCCC----------cccc
Confidence 3 223467888999999999888876542 233455443 2354 4444444322110 000000 0012
Q ss_pred ceeeeeEEEEeHHHHHHHHhh
Q 017030 219 YIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 219 ~~~~~Giy~~~~~~l~~~l~~ 239 (378)
...|+..++|+-++++++++.
T Consensus 324 ~~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 324 NAGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp CEEEEEEEEEEHHHHHHHHHT
T ss_pred cccceeheeeEHHHHHHHHHh
Confidence 357889999999999888754
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.07 E-value=1.7e-06 Score=74.70 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=11.1
Q ss_pred ceEcCCCEECCCCEEee
Q 017030 338 SVVGIRSRINANVHLKV 354 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~ 354 (378)
..||+++.|+.++.|..
T Consensus 84 v~IG~~v~ig~~~~i~~ 100 (262)
T d2jf2a1 84 VEIGDRNRIRESVTIHR 100 (262)
T ss_dssp EEECSSCEECTTCEEEC
T ss_pred EEECCeeeecceEeccC
Confidence 35666666677777765
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=3.3e-06 Score=72.83 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=25.3
Q ss_pred CCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEE
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL 352 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i 352 (378)
+|++.|.+++.|++++.| ++|.| .++.||+||.|+ ++.|. ++.||+++.|.+++.|
T Consensus 4 h~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I 63 (259)
T d1j2za_ 4 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 63 (259)
T ss_dssp CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence 344444444444444444 23333 234444444444 33332 4555555555555555
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=3.9e-06 Score=68.06 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=24.7
Q ss_pred eEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee-eeeE
Q 017030 339 VVGIRSRINANVHLK-VSPANPLCRRIWKCSSL-CSVI 374 (378)
Q Consensus 339 iI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~-~~~~ 374 (378)
.++..++||++|.|. +|+|+++++|+++|.+- +|||
T Consensus 124 ~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV 161 (182)
T d1ocxa_ 124 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVV 161 (182)
T ss_dssp BEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred eEcceeEECceEeeCceeeccCcEEECCCCEECCCCEE
Confidence 455566777777773 37778888888888775 5554
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=9.5e-06 Score=66.74 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=37.1
Q ss_pred cCCCCCCcee-eCceee---eeEEecCcEEc-ceEEeec-------------eEcCCCEECCCCEEe-eeeeCCCCeEee
Q 017030 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEHS-------------VVGIRSRINANVHLK-VSPANPLCRRIW 365 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~S-------------iI~~~~~Ig~~~~i~-~sIi~~~~~~~~ 365 (378)
+..|+.+++| .++.|. ...||++|.|+ ++.|.+. .+...++||++|.|. +|+|+++++|++
T Consensus 74 nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~ 153 (200)
T d1krra_ 74 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 153 (200)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCC
Confidence 4456666666 455552 34667777776 5555332 222334444444443 355666666666
Q ss_pred eeeee-eeeE
Q 017030 366 KCSSL-CSVI 374 (378)
Q Consensus 366 ~~~~~-~~~~ 374 (378)
+|.+- +|||
T Consensus 154 ~~vIgagSvV 163 (200)
T d1krra_ 154 NSVIGAGSIV 163 (200)
T ss_dssp TCEECTTCEE
T ss_pred CcEEeCCCEE
Confidence 66553 4444
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=97.99 E-value=2.8e-06 Score=73.30 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=7.2
Q ss_pred cEEccCCCCCCcee
Q 017030 301 PIYTSRRNLPPSKI 314 (378)
Q Consensus 301 ~i~~~~~i~~~~~i 314 (378)
.|++.+.|.|++.|
T Consensus 2 ~Ih~sAiI~~~a~I 15 (259)
T d1j2za_ 2 KIAKTAIISPKAEI 15 (259)
T ss_dssp CBCTTCEECTTSEE
T ss_pred cCCCCCEECCCCEE
Confidence 34455555555555
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=97.86 E-value=1.1e-05 Score=66.16 Aligned_cols=78 Identities=9% Similarity=-0.058 Sum_probs=46.8
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEee-eeeCCCCeEeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~ 369 (378)
.+.+.+.+.+++.|+.++.| .++.|. ++.||++|.|+ ++.+. ++.|+++|.||.|+.|.. ..|++++.|+-++.+
T Consensus 96 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV 175 (193)
T d3bswa1 96 LIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL 175 (193)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred eEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEE
Confidence 34444555555555555555 344443 56677777776 55553 367777777777776653 556666666666665
Q ss_pred eee
Q 017030 370 LCS 372 (378)
Q Consensus 370 ~~~ 372 (378)
..+
T Consensus 176 ~~d 178 (193)
T d3bswa1 176 VKN 178 (193)
T ss_dssp CSC
T ss_pred CcC
Confidence 544
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=1.8e-05 Score=65.10 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=23.1
Q ss_pred EccCCCCCCceee-CceeeeeEEecCcEEc-ceEE---eeceEcCCCEECCCCEEee
Q 017030 303 YTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKV 354 (378)
Q Consensus 303 ~~~~~i~~~~~i~-~~~i~~s~Ig~~~~I~-~~~i---~~SiI~~~~~Ig~~~~i~~ 354 (378)
..++.|+||++++ + .|..||+||.|+ ++.| ....||++|.||+++.|..
T Consensus 58 G~~~~I~p~~~i~~G---~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~ 111 (200)
T d1krra_ 58 GENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 111 (200)
T ss_dssp CSSCEECSCEEESCS---TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEES
T ss_pred CCCCEEcCCEEEecC---CccEECCccEECceEEEecCCCcEeCCCccccceeEEec
Confidence 3344445555441 1 123344444444 3443 2235666666666666643
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=97.70 E-value=4.8e-05 Score=60.87 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=19.8
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT 331 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~ 331 (378)
++++.+.+..++.|+++|.| .++.|. +..||++|.++
T Consensus 20 ~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~ 61 (172)
T d1xhda_ 20 FIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQ 61 (172)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEEC
T ss_pred EECCCCEEeCCEEECCCcEecCCcccccccccccccceeeee
Confidence 45555555555666666666 344443 23555555554
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=3e-05 Score=63.74 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=33.8
Q ss_pred EEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.....|+++++| +++.|+ ++.||+||.|+ ++.|.++.++.++.+...+...++.++.++.++.
T Consensus 11 i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~ 77 (201)
T d2oi6a1 11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP 77 (201)
T ss_dssp EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECS
T ss_pred ECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCc
Confidence 4555555566655 445554 56666666666 5666555555444444444444444444444333
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.63 E-value=4.1e-05 Score=61.40 Aligned_cols=75 Identities=9% Similarity=-0.003 Sum_probs=37.1
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEE----------------eeceEcCCCEECCCCEE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI----------------EHSVVGIRSRINANVHL 352 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i----------------~~SiI~~~~~Ig~~~~i 352 (378)
++++.+.+..++.|++++.| .++.|. +..|+++|.++ .+.+ .+..+...+.||++|.|
T Consensus 18 ~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i 97 (173)
T d1v3wa_ 18 FVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVII 97 (173)
T ss_dssp EECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEE
T ss_pred EECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCcccc
Confidence 45555666666666666666 345553 33455555554 3322 11112223444444444
Q ss_pred ee-eeeCCCCeEeeeeee
Q 017030 353 KV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 353 ~~-sIi~~~~~~~~~~~~ 369 (378)
.. |+|+++++|+++|.+
T Consensus 98 g~~~~i~~gv~Ig~~~vI 115 (173)
T d1v3wa_ 98 GISSVILDGAKIGDHVII 115 (173)
T ss_dssp CTTCEECTTCEECSSEEE
T ss_pred cceeeecCCEEEcceeEE
Confidence 42 555566666666555
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=97.55 E-value=5.9e-05 Score=63.43 Aligned_cols=51 Identities=10% Similarity=-0.106 Sum_probs=30.9
Q ss_pred eEEecCcEEc-ceEEe---------eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 322 SIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
+.||+||.|+ |+.|- ..+|+++|.||.++.|- +.+|++++.|+-|+.+-.|
T Consensus 150 aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~ 211 (274)
T d3tdta_ 150 AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQS 211 (274)
T ss_dssp CEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred eEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEecc
Confidence 3555555555 44442 34577777777777654 3667777777666666554
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=97.46 E-value=0.00019 Score=57.25 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=13.5
Q ss_pred CCCCCcee-eCcee-eeeEEecCcEEc-ceEE
Q 017030 307 RNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI 335 (378)
Q Consensus 307 ~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i 335 (378)
.|+++++| +.+.| .++.||+||.|+ ++.|
T Consensus 14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I 45 (172)
T d1xhda_ 14 KIASSAFIADYVTITGDVYVGEESSIWFNTVI 45 (172)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEECTTCEE
T ss_pred EECCCcEECCCCEEeCCEEECCCcEecCCccc
Confidence 34444444 23333 245555555555 4544
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.00038 Score=56.76 Aligned_cols=75 Identities=16% Similarity=0.029 Sum_probs=41.0
Q ss_pred cCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEE------------------eee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHL------------------KVS 355 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i------------------~~s 355 (378)
+++.+.|...+.|+++++| .++.+.++.++.++.+. .+...++.+++++.+++++.+ ..+
T Consensus 23 Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~~~~~ 102 (201)
T d2oi6a1 23 IDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKA 102 (201)
T ss_dssp ECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEE
T ss_pred ECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeeeeeeecceeeeeee
Confidence 3444445555555555555 44555555555555554 455566666666666555544 445
Q ss_pred eeCCCCeEeeeeeee
Q 017030 356 PANPLCRRIWKCSSL 370 (378)
Q Consensus 356 Ii~~~~~~~~~~~~~ 370 (378)
.+++++++++.+.+.
T Consensus 103 ~ig~~~~i~~~~~~~ 117 (201)
T d2oi6a1 103 RLGKGSKAGHLTYLG 117 (201)
T ss_dssp EECTTCEEEEEEEEE
T ss_pred eeCCCeEEceeeeec
Confidence 556666666555554
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.33 E-value=0.00031 Score=55.96 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=13.5
Q ss_pred eeEEecCcEEc-ceEEe----eceEcCCCEECCCCE
Q 017030 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVH 351 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~----~SiI~~~~~Ig~~~~ 351 (378)
++.||++|.|+ ++.|. +..|++++.++.++.
T Consensus 28 ~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~ 63 (173)
T d1v3wa_ 28 DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVS 63 (173)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCE
T ss_pred ceEECCCCEECCCccccccccccccccccccccccc
Confidence 34444444444 34332 334555544444443
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.28 E-value=0.00021 Score=60.25 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=45.1
Q ss_pred CcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEEee-eeeCCCCeEe
Q 017030 300 KPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHLKV-SPANPLCRRI 364 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~ 364 (378)
..|++.+.|++++.|+ +..+. ++.||+||.|. ++.+ ...+||+||.||.||.|-+ ..||++++|+
T Consensus 138 ~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~Ig 217 (241)
T d1ssqa_ 138 VDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIG 217 (241)
T ss_dssp CEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEEC
T ss_pred eccccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCCcEECCCCEEC
Confidence 4556667777777772 33332 45556666655 4443 2356888888888885544 6677777777
Q ss_pred eeeeeeeee
Q 017030 365 WKCSSLCSV 373 (378)
Q Consensus 365 ~~~~~~~~~ 373 (378)
-|+....+|
T Consensus 218 AgsvV~kdV 226 (241)
T d1ssqa_ 218 ANSVVLNPV 226 (241)
T ss_dssp TTCEECSCB
T ss_pred CCCEECCCC
Confidence 666655443
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.26 E-value=0.00017 Score=63.78 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=37.2
Q ss_pred CCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEcceEE-eeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~~~~i-~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
++++.++++++|.+++.| +.+.| .++.||++|.|+++.| .++.|+++++|++++.+.++.+..+++|.+++.+
T Consensus 61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i 136 (320)
T d2f9ca1 61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEI 136 (320)
T ss_dssp STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEE
T ss_pred CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEE
Confidence 344555555555555555 33443 2445555555543222 3345555555555555555555555555555554
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.20 E-value=0.00023 Score=58.63 Aligned_cols=27 Identities=15% Similarity=-0.091 Sum_probs=14.7
Q ss_pred CEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 344 SRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 344 ~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
++||++|.|. +|+|+++++|+++|.+.
T Consensus 109 v~Igd~v~IG~~s~I~~gv~IG~~~vIg 136 (208)
T d1xata_ 109 TLIGHEVWIGTEAMFMPGVRVGHGAIIG 136 (208)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEcCCeEECccccccCCeEeCCCCEEe
Confidence 4555555552 25556666666666553
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=97.05 E-value=0.00042 Score=58.15 Aligned_cols=35 Identities=34% Similarity=0.323 Sum_probs=20.1
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
.++|++||.|| +|.| ...+|+++++|+.|+.|..+
T Consensus 175 p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~ 211 (274)
T d3tdta_ 175 PTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQS 211 (274)
T ss_dssp CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CcEEecCcEeccCceEecCEEecCceEeccceEEecc
Confidence 45677777776 5433 45555555555555555553
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=96.92 E-value=0.00021 Score=58.62 Aligned_cols=27 Identities=11% Similarity=-0.103 Sum_probs=15.2
Q ss_pred CEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 344 SRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 344 ~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
|+||++|.|.. |+|+++++|+++|.+-
T Consensus 114 v~IGd~v~IG~~~~I~~gv~IG~~~~Ig 141 (203)
T d1mr7a_ 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVA 141 (203)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCEEEECCceeEEeEEEEcCCCEEe
Confidence 44555554444 5566666666666653
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00059 Score=54.76 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=11.1
Q ss_pred EcCCCEECCCCEEee-eeeCCCCeEeeeee
Q 017030 340 VGIRSRINANVHLKV-SPANPLCRRIWKCS 368 (378)
Q Consensus 340 I~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~ 368 (378)
||++|.||.+|.|.. +.|++++.|+-++.
T Consensus 131 Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsv 160 (182)
T d1ocxa_ 131 IGNNVWIGGRAVINPGVTIGDNVVVASGAV 160 (182)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred ECceEeeCceeeccCcEEECCCCEECCCCE
Confidence 344443333333333 33333333333333
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=96.89 E-value=0.00063 Score=59.88 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=11.8
Q ss_pred eEEecCcEEc-ceEEeeceEcCCCEECCCCEE
Q 017030 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHL 352 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i 352 (378)
+.|+.+++|+ ++.|.++.|.++++|+++|+|
T Consensus 82 ~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i 113 (320)
T d2f9ca1 82 CTLYNNVRIGDNVWIDRADISDGARISDNVTI 113 (320)
T ss_dssp CEECSSCEECSSCEESSCEECSSEEECSSCEE
T ss_pred cEECCCcEECCcEEECCcEEEcCcEEeeeeee
Confidence 3333333333 333333333333333333333
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=96.27 E-value=0.00075 Score=55.20 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=27.1
Q ss_pred eceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 337 HSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
.++||++|.||.+|.|.. +.|++++.|+-++.+..+
T Consensus 113 ~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kd 149 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD 149 (203)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred CeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeee
Confidence 367888888888888864 777777777777776554
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.90 E-value=0.0029 Score=51.69 Aligned_cols=36 Identities=8% Similarity=-0.055 Sum_probs=31.8
Q ss_pred ceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeee
Q 017030 338 SVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~ 373 (378)
++||++|.||.+|.|.. +.|+++|.|+-++.+..+|
T Consensus 109 v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdv 145 (208)
T d1xata_ 109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDV 145 (208)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECSCB
T ss_pred EEEcCCeEECccccccCCeEeCCCCEEeCceEEeecC
Confidence 79999999999999988 9999999999999886543
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=95.18 E-value=0.016 Score=48.27 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=30.5
Q ss_pred eeEEecCcEEc-ce-EEeeceEcCCCEECCCCEEeeeeeCCCCeEe
Q 017030 321 DSIISHGSFIT-SS-FIEHSVVGIRSRINANVHLKVSPANPLCRRI 364 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~-~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~ 364 (378)
...||+||.|| |+ .+-+..||++++||.|+.+...+ -+++++.
T Consensus 189 ~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kdV-p~~~vv~ 233 (241)
T d1ssqa_ 189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPV-PEYATAA 233 (241)
T ss_dssp SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB-CTTCEEE
T ss_pred CCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCCC-CCCCEEE
Confidence 36789999998 75 44567788888888888887763 4555443
|