Citrus Sinensis ID: 017047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MENPIVQTDEDPVEKQSPVSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSDAKTETLKKASTKPALSVASSSRRVSSMSLDSSGSNVSRKTISKVSSPSVRSPSVSSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEASQSFPIWSFSLLLKIS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEcccEEEEEccccEEEEEccccccccccEEEEEEcccccccccccEEEEcEEEEEEccccccccccccccccHHHHHccccEEEEEEHHHHHcccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccccccHccccccccccccccEEcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEcccccccccccccccccccccccccccccccccEEEEcccEEEEccccEEEccccccEEEcccccccccccEEEEEEccccHHccccEEEEEEEEEEEEccccccccccccHHHHHEHEccccHHHHHHHHHHHHHcccccHEHHHHHHEcc
Coil and Loop (DISEMBL)
menpivqtdedpvekqspvssvESAKKITKVGKPGVAATLKVsvapsssikkktdpksgsarssnltkptvsaslkttnsvpvtrrkstgglpekspasttkqtitadsavgkktntvlsepvrrslpeirrsslpsvvtkptstrasvsqtrksvpispvgrslskstgsdaktetlkkastkpalsvasssrrvssmsldssgsnvsrktiskvsspsvrspsvssglrngslsssldrssnlsgqrragtpqskdsrfivlpqveikagddvrldLRGHRVRSLIASglnlqpnlefVYLRDNMLSTLEGIEILTRVKVLdlsfndfkgpgfeplenckalqfcsncILLETKLHLLeasqsfpiwSFSLLLKIS
Flexible Loop (DISEMBL)
menpivqtdedpvekqspvssvesakkitkvgkpgvaatlkvsvapsssikkktdpksgsarssnltkptvsaslkttnsvpvtrrkstgglpekspasttkqtitadsavgkktntvlsepvrrslpeirrsslpsvvtkptstrasvsqtrksvpispvgrslskstgsdaktetlkkastkpalsvasssrrvssmsldssgsnvsrktiskvsspsvrspsvssglrngslsssldrssnlsgqrragtpqskdsrfivlpqveikagddvrlDLRGHRVRSLiasglnlqpnlEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEasqsfpiwsfslllkis
Low Complexity Region (SEG)
MENPIVQTDEDPVEKQSPVSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSDAKTETLKKASTKPALsvasssrrvssmsldssgsnvsRKTIskvsspsvrspsvssglrngslsssldrssnlsGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEASQSFPIWSFSLLLKIS
Disordered region (IsUnstruct)
********************************************************************************************************************************************************************************************************************************************************************FIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEASQSFPIWSFSLLLK**
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEASQSFPIWSFSLLLKIS
Disordered Region (DISEMBL)
*********************************PGVAATLKVS************************************SVPVT********************ITADSAVGKKTNTVLSEPVRRSLPEIRRSS**************************************************************************************************************************KDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEASQSFPIWSFSLLLKIS
Disordered Region (DISPRO)
*****************************************************************************************************************************************************************************************************************************************************************DSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEASQSFPIWSFSLLLKIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENPIVQTDEDPVEKQSPVSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSDAKTETLKKASTKPALSVASSSRRVSSMSLDSSGSNVSRKTISKVSSPSVRSPSVSSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLETKLHLLEASQSFPIWSFSLLLKIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
255564413	1582	protein phosphatases pp1 regulatory subu	0.867	0.207	0.688	1e-108
359483669	1717	PREDICTED: uncharacterized protein LOC10	0.904	0.199	0.648	2e-94
449433539	1739	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.891	0.193	0.571	3e-81
449490728	1209	PREDICTED: uncharacterized LOC101209660	0.891	0.278	0.571	3e-81
147845708	350	hypothetical protein VITISV_015082 [Viti	0.888	0.96	0.546	1e-66
297826937	1701	AIR9 protein [Arabidopsis lyrata subsp.	0.714	0.158	0.553	3e-66
83272375	1708	AIR9 protein [Arabidopsis thaliana]	0.714	0.158	0.563	6e-66
334184686	1708	Outer arm dynein light chain 1 protein [	0.719	0.159	0.570	9e-66
3132477	1680	unknown protein [Arabidopsis thaliana]	0.719	0.161	0.570	1e-65
356558550	1690	PREDICTED: uncharacterized protein LOC10	0.735	0.164	0.536	1e-63

>gi|255564413|ref|XP_002523203.1| protein phosphatases pp1 regulatory subunit, putative [Ricinus communis] gi|223537610|gb|EEF39234.1| protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 236/343 (68%), Positives = 277/343 (80%), Gaps = 15/343 (4%)

Query: 10  EDPV------EKQSPVSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKTDPKSGSARS 63
           E+PV      EK S V+SVESAK++TK  KP ++AT  + V P+ S +K+ + ++    S
Sbjct: 6   EEPVDMIRTPEKPSSVTSVESAKRVTKTTKPTISATSNLLV-PTGSYRKRAESRNSLGSS 64

Query: 64  SNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPV 123
           SN+TKP++ AS + +NSVPV RR STGG+ EKS  S  KQ    +S  GK T  V S+PV
Sbjct: 65  SNVTKPSLVASSRNSNSVPVARRVSTGGVSEKS--SAVKQ---PNSVAGKNTPAV-SDPV 118

Query: 124 RRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSD-AKTETLKKAS 182
           RRSLPE+RRSSLPSV TK  S RASVS  RKS P +P+ RSL  STGSD +K E +KK S
Sbjct: 119 RRSLPELRRSSLPSVATKSVS-RASVSGARKSAPATPLDRSLRSSTGSDISKPEIVKKPS 177

Query: 183 TKPALSVASSSRRVSSMSLDSSGSNVSRKTISKVSSPSVRSPSVSSGLRNGSLSSSLDRS 242
            KPALSV+SSS+RVSS+SLDS+GS+ SRKT+SKVSSPS RSPSVSSG+R GSLS+S+DRS
Sbjct: 178 VKPALSVSSSSKRVSSISLDSTGSSASRKTVSKVSSPSARSPSVSSGMRTGSLSTSVDRS 237

Query: 243 SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVY 302
           SNLSG+R+ GTP+S+DSRFIVLPQVEIKAGDDVRLDLRGHRVRSL ASGLNL PNLEFVY
Sbjct: 238 SNLSGRRKMGTPESRDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLNASGLNLSPNLEFVY 297

Query: 303 LRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
           LRDN+LSTLEGIEIL RVKVLDLSFN+FKGPGFEPLENCKALQ
Sbjct: 298 LRDNLLSTLEGIEILKRVKVLDLSFNEFKGPGFEPLENCKALQ 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483669|ref|XP_002274947.2| PREDICTED: uncharacterized protein LOC100253161 [Vitis vinifera] gi|297740810|emb|CBI30992.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 229/353 (64%), Positives = 270/353 (76%), Gaps = 11/353 (3%)

Query: 1   MENPIVQTDEDPVEK-----QSP-VSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKT 54
           ME+P+VQ+ E P EK     Q P VSS ESAK++++  KP VAA  KV V P+ SI+KK 
Sbjct: 1   MEDPVVQSGEGPPEKPQVSEQKPSVSSSESAKRVSRTVKPSVAAASKVLV-PTGSIRKKM 59

Query: 55  DPKSGSARSSNLTKPTV--SASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVG 112
           + K  S  SS + K TV  S S +++NSVP+ RR STGGLPEKS  S TK+     S   
Sbjct: 60  ESKINSDSSSGVVKSTVTGSGSARSSNSVPL-RRNSTGGLPEKSSVSVTKRPSNVSSVAS 118

Query: 113 KKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSD 172
           KKT T+ S+P+RRSLPEIRRSSLPSVVTK TS R  VS+TRKS P+SP+ RSL  ST SD
Sbjct: 119 KKTTTLASDPLRRSLPEIRRSSLPSVVTK-TSPRVGVSETRKSGPVSPLTRSLRTSTESD 177

Query: 173 AKTETLKKASTKPALSVASSSRRVSSMSLDSSGSNVSRKTISKVSSPSVRSPSVSSGLRN 232
            + +   K S+  + S  SSS +  + SLDSSGS+  RK  SK+SSPS RSP++SSG + 
Sbjct: 178 VRKQETVKRSSVKSASSISSSSKRVTSSLDSSGSSTFRKVSSKLSSPSARSPAISSGSKV 237

Query: 233 GSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGL 292
           GSLSSS+DRSS+ SG+R+A TP+S+DSRFIVLPQVEIKAGDDVRLDLRGHRVRSL ASGL
Sbjct: 238 GSLSSSMDRSSSFSGRRKAATPESRDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLNASGL 297

Query: 293 NLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
           NL PNLEFVYLRDN+LSTLEG+EIL RVKVLDLSFNDFKGPGFEPLENCKALQ
Sbjct: 298 NLSPNLEFVYLRDNLLSTLEGVEILKRVKVLDLSFNDFKGPGFEPLENCKALQ 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433539|ref|XP_004134555.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209660 [Cucumis sativus]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 211/369 (57%), Positives = 259/369 (70%), Gaps = 32/369 (8%)

Query: 1   MENPIVQTDEDPVEKQSPVSSVE------SAKKITKVG--------KPGVAATLKVSVAP 46
           +E+ I QT E  +E   PV S +      +++K   VG        KP  A   KVS   
Sbjct: 13  LEDSIAQTGETNLEVPVPVRSEDIVVKHPNSQKAPAVGSSSSAKRSKPSAADAAKVS--- 69

Query: 47  SSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTIT 106
             S+++  + K+    SSN+TK T S S + + SVPVTRRKSTGGLPEKSPAS++K+   
Sbjct: 70  --SVRRGMESKTVLGSSSNVTKSTASGSTRVSGSVPVTRRKSTGGLPEKSPASSSKKVNN 127

Query: 107 ADSAVGKKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLS 166
           A++A   +T T  SEP RRSLPE++RSSL SVV+K  S R+SV   RKSV IS   RSL 
Sbjct: 128 ANNAAATRTPT--SEPTRRSLPELKRSSLSSVVSK-HSPRSSVPGARKSVLISSADRSLK 184

Query: 167 KSTGSDAKTETLKKASTK-------PALSVASSSRRVSSMSLDSSGSN--VSRKTISKVS 217
            S  SD   + + K + K       P++S + +SRR++S S +SSGS+  V+RKTISKVS
Sbjct: 185 TSIPSDTPDKAISKEAAKRSSIKSTPSISSSLTSRRLTSTSQESSGSSGSVARKTISKVS 244

Query: 218 SPSVRSPSVSSGLRNGSLSSSLDRSSNLSGQRRAG-TPQSKDSRFIVLPQVEIKAGDDVR 276
           SPS RSP+VSSG R  SLSS L+++S   GQR+A  TP+S+DSRF  LPQVEIKAGDD+R
Sbjct: 245 SPSARSPAVSSGSRASSLSSPLEKNSRSLGQRKASRTPESRDSRFACLPQVEIKAGDDLR 304

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           LDLRGHRVRSL ASGLNL PNLEFVYLRDN+LSTLEG+EIL RVKVLDLSFNDFKGPGFE
Sbjct: 305 LDLRGHRVRSLDASGLNLSPNLEFVYLRDNLLSTLEGVEILKRVKVLDLSFNDFKGPGFE 364

Query: 337 PLENCKALQ 345
           PL+NCKALQ
Sbjct: 365 PLDNCKALQ 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490728|ref|XP_004158689.1| PREDICTED: uncharacterized LOC101209660 [Cucumis sativus]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 211/369 (57%), Positives = 259/369 (70%), Gaps = 32/369 (8%)

Query: 1   MENPIVQTDEDPVEKQSPVSSVE------SAKKITKVG--------KPGVAATLKVSVAP 46
           +E+ I QT E  +E   PV S +      +++K   VG        KP  A   KVS   
Sbjct: 13  LEDSIAQTGETNLEVPVPVRSEDIVVKHPNSQKAPAVGSSSSAKRSKPSAADAAKVS--- 69

Query: 47  SSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTIT 106
             S+++  + K+    SSN+TK T S S + + SVPVTRRKSTGGLPEKSPAS++K+   
Sbjct: 70  --SVRRGMESKTVLGSSSNVTKSTASGSTRVSGSVPVTRRKSTGGLPEKSPASSSKKVNN 127

Query: 107 ADSAVGKKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLS 166
           A++A   +T T  SEP RRSLPE++RSSL SVV+K  S R+SV   RKSV IS   RSL 
Sbjct: 128 ANNAAATRTPT--SEPTRRSLPELKRSSLSSVVSK-HSPRSSVPGARKSVLISSADRSLK 184

Query: 167 KSTGSDAKTETLKKASTK-------PALSVASSSRRVSSMSLDSSGSN--VSRKTISKVS 217
            S  SD   + + K + K       P++S + +SRR++S S +SSGS+  V+RKTISKVS
Sbjct: 185 TSIPSDTPDKAISKEAAKRSSIKSTPSISSSLTSRRLTSTSQESSGSSGSVARKTISKVS 244

Query: 218 SPSVRSPSVSSGLRNGSLSSSLDRSSNLSGQRRAG-TPQSKDSRFIVLPQVEIKAGDDVR 276
           SPS RSP+VSSG R  SLSS L+++S   GQR+A  TP+S+DSRF  LPQVEIKAGDD+R
Sbjct: 245 SPSARSPAVSSGSRASSLSSPLEKNSRSLGQRKASRTPESRDSRFACLPQVEIKAGDDLR 304

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           LDLRGHRVRSL ASGLNL PNLEFVYLRDN+LSTLEG+EIL RVKVLDLSFNDFKGPGFE
Sbjct: 305 LDLRGHRVRSLDASGLNLSPNLEFVYLRDNLLSTLEGVEILKRVKVLDLSFNDFKGPGFE 364

Query: 337 PLENCKALQ 345
           PL+NCKALQ
Sbjct: 365 PLDNCKALQ 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845708|emb|CAN82174.1| hypothetical protein VITISV_015082 [Vitis vinifera]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 200/366 (54%), Positives = 248/366 (67%), Gaps = 30/366 (8%)

Query: 1   MENPIVQTDEDPVEK-----QSP-VSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKT 54
           ME P+VQ+ E P EK     Q P VSS ESAK++++  KP VAA  KV V P+ SI+KK 
Sbjct: 1   MEXPVVQSGEGPPEKPQVSEQKPSVSSSESAKRVSRTVKPSVAAASKVLV-PTGSIRKKM 59

Query: 55  DPKSGSARSSNLTKPTV--SASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVG 112
           + K  S  SS + K TV  S S +++NSVP+ RR STGGLPEKS  S TK+     S   
Sbjct: 60  ESKINSDSSSGVVKSTVTGSGSARSSNSVPL-RRNSTGGLPEKSSVSVTKRPSNVSSVAS 118

Query: 113 KKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSD 172
           KKT T+ S+P+RRSLPEIRRSSLPSVVTK TS R  VS+TRKS P+SP+ RSL  ST SD
Sbjct: 119 KKTTTLASDPLRRSLPEIRRSSLPSVVTK-TSPRVGVSETRKSGPVSPLTRSLRTSTESD 177

Query: 173 A-KTETLKKASTKPALSVASSSRRVSSMSLDSSGSNVSRKTISKVSSPSVRSPSVSSGLR 231
             K ET+K++S K A S++SSS+RV+S    S  S   RK  SK+SSPS RSP++SSG +
Sbjct: 178 VRKQETVKRSSVKSASSISSSSKRVTSSLDSSGSSTF-RKVSSKLSSPSARSPAISSGSK 236

Query: 232 NGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASG 291
            GSLSSS+DRSS+ SG+R+A TP+S+DSRFIVLPQVEIKAGDDVRLDLRGHRVRSL ASG
Sbjct: 237 VGSLSSSMDRSSSFSGRRKAATPESRDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLNASG 296

Query: 292 LNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCI 351
           LNL PNLE  YL   +L  ++ +E L    V+ L  N+                F  +C+
Sbjct: 297 LNLSPNLESYYLFGGLL--IKELEELQPFVVVGLLNNNL---------------FKCSCV 339

Query: 352 LLETKL 357
           + E  +
Sbjct: 340 VYEVSI 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826937|ref|XP_002881351.1| AIR9 protein [Arabidopsis lyrata subsp. lyrata] gi|297327190|gb|EFH57610.1| AIR9 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 211/298 (70%), Gaps = 28/298 (9%)

Query: 63  SSNLTKPTVSASLKTTNSVPVT-RRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLS- 120
           SSNL KPT S+SL+ + + PVT RR STGG+ EK         I A   + K+ +T  S 
Sbjct: 50  SSNLIKPTASSSLRVSGTTPVTIRRNSTGGVTEK--------LIGASKVLPKQMSTTASR 101

Query: 121 -EPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTG-SDAKTETL 178
            +PVRRSLPE+R+SS+ S+  K T ++ S+S+++KSVP+SP  RS +KS G S +K E+ 
Sbjct: 102 TDPVRRSLPELRKSSVSSLSAK-TVSKPSLSESKKSVPVSPGSRSSTKSPGFSLSKPES- 159

Query: 179 KKASTKPALSVASSSRRVSSMSLD-----------SSGSNVSRKTISKVSSPSVRSPSVS 227
              S +P++S + SS+R  S S+D            S  N  R      S  +  SPSVS
Sbjct: 160 ---SARPSMSASVSSKRAPSSSVDSSGSRTSSGRLHSTLNSGRIVSKVSSPSAGSSPSVS 216

Query: 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSL 287
           SG+R+ SLS+ LDRSSN SG+++  TP+S+DSR I+LP+VE+KAGDD+RLDLRGHR+RSL
Sbjct: 217 SGIRSKSLSTPLDRSSNFSGRKKTATPESRDSRLIILPKVEVKAGDDMRLDLRGHRIRSL 276

Query: 288 IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
            + GL+L PNLEFVYLRDN+LSTLEGIEIL RVKVLDLSFNDFKGPGFEPLENCK LQ
Sbjct: 277 TSGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGPGFEPLENCKMLQ 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83272375|gb|ABC00767.1| AIR9 protein [Arabidopsis thaliana]

 Score =  257 bits (657), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 168/298 (56%), Positives = 213/298 (71%), Gaps = 28/298 (9%)

Query: 63  SSNLTKPTVSASLKTTNSVPVT-RRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLS- 120
           SSNL KPT S+SL+ + + PVT RR STGG+        T+    A   + K+ +T  S 
Sbjct: 57  SSNLIKPTASSSLRVSGTTPVTIRRNSTGGV--------TENLAGASKVLPKQVSTTASR 108

Query: 121 -EPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTG-SDAKTETL 178
            +PVRRSLPE+R+SS+ S+  K T ++ S+S+++KSVP+SP  RSL+KSTG S +K E+ 
Sbjct: 109 TDPVRRSLPELRKSSVSSLSAK-TVSKPSLSESKKSVPVSPGSRSLTKSTGFSLSKPES- 166

Query: 179 KKASTKPALSVASSSRRVSSMSLDSSGSN----------VSRKTISKVSSPSVRSPSVSS 228
              S +PA+SV+ SS+R  S S+DSSGS            S +T+SKVSSPS  S    S
Sbjct: 167 ---SARPAMSVSVSSKRAPSSSVDSSGSRTSSGRLHSTLTSGRTVSKVSSPSAGSSPSVS 223

Query: 229 GLRNGSLSSS-LDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSL 287
                   SS LDR+SN SG+++  TP+S+DSR I+LP+VE+KAGDD+RLDLRGHR+RSL
Sbjct: 224 SSIRSKSFSSPLDRTSNFSGRKKTATPESRDSRLIILPKVEVKAGDDMRLDLRGHRIRSL 283

Query: 288 IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
            + GL+L PNLEFVYLRDN+LSTLEGIEIL RVKVLDLSFNDFKGPGFEPLENCK LQ
Sbjct: 284 TSGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGPGFEPLENCKMLQ 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184686|ref|NP_181015.7| Outer arm dynein light chain 1 protein [Arabidopsis thaliana] gi|330253915|gb|AEC09009.1| Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 169/296 (57%), Positives = 212/296 (71%), Gaps = 24/296 (8%)

Query: 63  SSNLTKPTVSASLKTTNSVPVT-RRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSE 121
           SSNL KPT S+SL+ + + PVT RR STGG+ E   A T+K      S    +T+     
Sbjct: 57  SSNLIKPTASSSLRVSGTTPVTIRRNSTGGVTENL-AGTSKVLPKQVSTTASRTD----- 110

Query: 122 PVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTG-SDAKTETLKK 180
           PVRRSLPE+R+SS+ S+  K T ++ S+S+++KSVP+SP  RSL+KSTG S +K E+   
Sbjct: 111 PVRRSLPELRKSSVSSLSAK-TVSKPSLSESKKSVPVSPGSRSLTKSTGFSLSKPES--- 166

Query: 181 ASTKPALSVASSSRRVSSMSLDSSGSN----------VSRKTISKVSSPSVRSPSVSSGL 230
            S +PA+SV+ SS+R  S S+DSSGS            S +T+SKVSSPS  S    S  
Sbjct: 167 -SARPAMSVSVSSKRAPSSSVDSSGSRTSSGRLHSTLTSGRTVSKVSSPSAGSSPSVSSS 225

Query: 231 RNGSLSSS-LDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIA 289
                 SS LDR+SN SG+++  TP+S+DSR I+LP+VE+KAGDD+RLDLRGHR+RSL +
Sbjct: 226 IRSKSFSSPLDRTSNFSGRKKTSTPESRDSRLIILPKVEVKAGDDMRLDLRGHRIRSLTS 285

Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
            GL+L PNLEFVYLRDN+LSTLEGIEIL RVKVLDLSFNDFKGPGFEPLENCK LQ
Sbjct: 286 GGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGPGFEPLENCKMLQ 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3132477|gb|AAC16266.1| unknown protein [Arabidopsis thaliana]

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/296 (57%), Positives = 213/296 (71%), Gaps = 24/296 (8%)

Query: 63  SSNLTKPTVSASLKTTNSVPVT-RRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSE 121
           SSNL KPT S+SL+ + + PVT RR STGG+ E + A T+K      S    +T+     
Sbjct: 57  SSNLIKPTASSSLRVSGTTPVTIRRNSTGGVTE-NLAGTSKVLPKQVSTTASRTD----- 110

Query: 122 PVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTG-SDAKTETLKK 180
           PVRRSLPE+R+SS+ S+  K T ++ S+S+++KSVP+SP  RSL+KSTG S +K E+   
Sbjct: 111 PVRRSLPELRKSSVSSLSAK-TVSKPSLSESKKSVPVSPGSRSLTKSTGFSLSKPES--- 166

Query: 181 ASTKPALSVASSSRRVSSMSLDSSGSN----------VSRKTISKVSSPSVRSPSVSSGL 230
            S +PA+SV+ SS+R  S S+DSSGS            S +T+SKVSSPS  S    S  
Sbjct: 167 -SARPAMSVSVSSKRAPSSSVDSSGSRTSSGRLHSTLTSGRTVSKVSSPSAGSSPSVSSS 225

Query: 231 RNGSLSSS-LDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIA 289
                 SS LDR+SN SG+++  TP+S+DSR I+LP+VE+KAGDD+RLDLRGHR+RSL +
Sbjct: 226 IRSKSFSSPLDRTSNFSGRKKTSTPESRDSRLIILPKVEVKAGDDMRLDLRGHRIRSLTS 285

Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
            GL+L PNLEFVYLRDN+LSTLEGIEIL RVKVLDLSFNDFKGPGFEPLENCK LQ
Sbjct: 286 GGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGPGFEPLENCKMLQ 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558550|ref|XP_003547568.1| PREDICTED: uncharacterized protein LOC100807099 [Glycine max]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 163/304 (53%), Positives = 211/304 (69%), Gaps = 26/304 (8%)

Query: 49  SIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITAD 108
           S K+K +P++GS  ++     ++  S  +  S P  RR STGGL +K+  S  ++   A+
Sbjct: 42  SAKRKVEPRTGSVTAATKRSGSIGGS-ASAGSAP--RRNSTGGLSQKASISDGRRKTGAE 98

Query: 109 SAVGKKTN-TVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSK 167
           SA G ++  +  SEPVRRSLPE+RRSS+       TS+R +V    K    SP   + + 
Sbjct: 99  SAAGARSGASSGSEPVRRSLPELRRSSV-------TSSRVAV----KPAVASPAAPASAS 147

Query: 168 STGSDAKTETLKKASTKPALSVASSS----RRVSSMSLDSSGSNV--SRKTISKVSSPSV 221
            T   +K E  KK  +KPALS  +S+    RR+ S S+DS+ S+   +R+T+S+VSSP+V
Sbjct: 148 RTSVASKVEVAKKPVSKPALSALTSASSLSRRIGSSSVDSTASSSGSARRTVSRVSSPTV 207

Query: 222 RSPSVSSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRG 281
                SSGL+ G LS+S DR+S +SG+R+  T  S+DSRFIVLPQVEIKA DD+RLDLRG
Sbjct: 208 -----SSGLKAGYLSTSQDRTSAMSGRRKGSTADSRDSRFIVLPQVEIKANDDLRLDLRG 262

Query: 282 HRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENC 341
           HRVRSL ASGLNL  NLEFVYLRDN+LSTLEG+E+LTRVKVLDLSFN+FKGPGFEPLENC
Sbjct: 263 HRVRSLNASGLNLSSNLEFVYLRDNLLSTLEGVEVLTRVKVLDLSFNEFKGPGFEPLENC 322

Query: 342 KALQ 345
           K LQ
Sbjct: 323 KVLQ 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.658	0.665	0.170	1.8e-05
CGD|CAL0006147	467	WSC2 [Candida albicans (taxid:	0.386	0.312	0.276	2e-05
DICTYBASE|DDB_G0283607	506	eb1 "microtubule-associated pr	0.415	0.310	0.280	2.3e-05
SGD|S000003912	1161	DAN4 "Cell wall mannoprotein w	0.444	0.144	0.270	2.5e-05
WB|WBGene00021580	456	clec-174 [Caenorhabditis elega	0.412	0.342	0.264	3.3e-05
DICTYBASE|DDB_G0287875	1211	DDB_G0287875 "ras association	0.391	0.122	0.321	0.00012
SGD|S000004276	562	CTS1 "Endochitinase" [Saccharo	0.402	0.270	0.296	0.00013
UNIPROTKB|P98088	5030	MUC5AC "Mucin-5AC" [Homo sapie	0.455	0.034	0.297	0.00016
SGD|S000005535	487	TIR4 "Cell wall mannoprotein o	0.431	0.334	0.275	0.00017
SGD|S000001458	1367	FLO11 "GPI-anchored cell surfa	0.457	0.126	0.287	0.00018

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 43/252 (17%), Positives = 87/252 (34%)

Query:     8 TDEDPVEKQSPVSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKTDPKSGSARSSNLT 67
             T+E+P   Q  +  +E   K+ +VG  GVA+ L +    SSS    +   S S+ SS+ +
Sbjct:    31 TNEEP---QRDIYQLEKTNKMAEVGDLGVASFLNILDTSSSSSSSSSSSSSSSSSSSSSS 87

Query:    68 KPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPVRRSL 127
               + S+S  +++S   +   S+      S +S++  + ++ S+    +++  S     S 
Sbjct:    88 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 147

Query:   128 PEIRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSDAKTETLKKASTKPAL 187
                  SS  S  +  +S+ +S S +  S   S    S S S+ S + + +   +S+  + 
Sbjct:   148 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 207

Query:   188 XXXXXXXXXXXXXXXXXXXXXXRKTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 247
                                     +                                   
Sbjct:   208 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 267

Query:   248 QRRAGTPQSKDS 259
                + +  S  S
Sbjct:   268 SSSSSSSSSSSS 279

GO:0005576 "extracellular region" evidence=IEA

CGD|CAL0006147 WSC2 [Candida albicans (taxid:5476)]

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 42/152 (27%), Positives = 71/152 (46%)

Query:    37 AATLKVSVAPSSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKS 96
             A +   S   +SS    +  KS S+ SS+ +  + S    +T ++  T  + T   PE +
Sbjct:   105 AQSSSTSSTSTSSTSSTSSSKSTSSSSSSTSSSSTSTEQPSTTTIQATTTEQTTAEPEST 164

Query:    97 --PASTTKQTITADS--AVGKKTNTVLSEPVRRSLPEI-RRSSLPSVVTKP-TSTRASVS 150
               P +T KQ  T+ S      +T TV+S  V+   P +  ++ + +  + P TS+ +S S
Sbjct:   165 EQPETTEKQQTTSSSRTTTQPRTTTVVSTSVQNGTPSVVYKTIVATPSSNPSTSSSSSSS 224

Query:   151 QTRKSVPISPVGRSLSKSTGSDAKTETLKKAS 182
              +  + P S    S S  TGS  K +   K+S
Sbjct:   225 SSSSTTPPSTSTSSSSSETGSKDKGKNQSKSS 256

GO:0043332 "mating projection tip" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005933 "cellular bud" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

DICTYBASE|DDB_G0283607 eb1 "microtubule-associated protein EB1" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 48/171 (28%), Positives = 81/171 (47%)

Query:    18 PVSSVESAKKITKVGKPGVAATLKVSVAPSSSIKKKTDPKSGSARSSNLTKPTVSASLKT 77
             P     S+ K  K    G   T K S  PSS++K  T   + +++ + ++KPT + +  T
Sbjct:   125 PTDKDRSSLK-GKTAATGAPPTSKPS--PSSTLKPAT---TAASKPAPVSKPTTTTAKPT 178

Query:    78 TNSV--PVTR-RKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPVRRSLPEIRRSS 134
              +SV  PV++   S+   P   P  +  + +T  +     T+T  +     S P+   + 
Sbjct:   179 PSSVSKPVSKPTPSSISKPVSKPTPSISKPVTKPTPTTTSTSTTTTVSTPPSTPKPTNTP 238

Query:   135 LPSVVTKPTSTRASVSQTRKSV-PISPV--GRSLSKSTG--SDAKTETLKK 180
             +PS   KPT T+ +   T KSV P  PV  G +++  T   S+  TE L++
Sbjct:   239 IPSTTGKPTLTQPTFKPTPKSVSPTPPVVAGSTVTTKTVIVSEPPTELLEE 289

GO:0045502 "dynein binding" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051225 "spindle assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0031592 "centrosomal corona" evidence=IDA

GO:0031252 "cell leading edge" evidence=IDA

GO:0031143 "pseudopodium" evidence=IDA

GO:0008017 "microtubule binding" evidence=IEA;IMP

GO:0005874 "microtubule" evidence=IEA;IDA

GO:0005819 "spindle" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000922 "spindle pole" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0000776 "kinetochore" evidence=IEA;IDA

GO:0000236 "mitotic prometaphase" evidence=IMP

GO:0000235 "astral microtubule" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

SGD|S000003912 DAN4 "Cell wall mannoprotein with similarity to Tir1p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 50/185 (27%), Positives = 96/185 (51%)

Query:     6 VQTDEDPVEKQSPVSSVESAK--KITKVGKPGVAATLKVSVAP--SSSIKKKTDPKSGSA 61
             V +  +P       SSVE  +  ++T   +P   +    SV P  SS +    +P + S 
Sbjct:   393 VTSSAEPTTVSEFTSSVEPTRSSQVTSSAEPTTVSEFTSSVEPTRSSQVTSSAEPTTVSE 452

Query:    62 RSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITAD-SAVGKKTNTVLS 120
              +S++ +PT S+ + T+++ P T  + T  +    P  +++ T +A+ + V + T++V  
Sbjct:   453 FTSSV-EPTRSSQV-TSSAEPTTVSEFTSSV---EPTRSSQVTSSAEPTTVSEFTSSV-- 505

Query:   121 EPVRRSLPEIRRSSLPSVVTKPTSTRASV--SQTRKSVPISPVGRSLSKSTGSDAKTETL 178
             EP+R S  ++  S+ P+ V++ TS+   +  SQ   + P+S  G + S+ T S A+  + 
Sbjct:   506 EPIRSS--QVTSSAEPTTVSEVTSSVEPIRSSQVTTTEPVSSFGSTFSEITSS-AEPLSF 562

Query:   179 KKAST 183
              KA+T
Sbjct:   563 SKATT 567

GO:0005618 "cell wall" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00021580 clec-174 [Caenorhabditis elegans (taxid:6239)]

 Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 45/170 (26%), Positives = 75/170 (44%)

Query:    29 TKVGKPGVAATLKVSVAPSSSIKKK-TDPKSGSARSSNLTKPTVSASLKTTNSVPVT--R 85
             T    P    T+K +    +++K   T P + +   S  T PT   ++K+T + P T   
Sbjct:   157 TMKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTT 216

Query:    86 RKSTGGLP------EKSPAS-TTKQTITADSAVGKKTNTVLSEPVRRSLPEIRRSSLPSV 138
              KST   P      + +P + TT  T+ +         T+ S P   + P   +S+ P+ 
Sbjct:   217 MKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKST-PTT 275

Query:   139 VTKPTSTRASVSQ--TRKSVPISPVGRSLSKSTGSDAKTET-LKKASTKP 185
              T PT+ +++ +   T KS P +P   +  KST +   T T +K   T P
Sbjct:   276 PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTP 325

GO:0030246 "carbohydrate binding" evidence=IEA

DICTYBASE|DDB_G0287875 DDB_G0287875 "ras association (RA) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 53/165 (32%), Positives = 74/165 (44%)

Query:     9 DEDPVEKQSPVSSVESAKKITKVGKPGVAATLKV-SVAPSSSI---KKKTDP--KSGSAR 62
             +ED ++K+      E  +K+ K      AAT  + S A S+S    K  T P  K+ S  
Sbjct:   542 EEDRLKKEKEEKEKEEKEKLEKESSAAAAATSSIASTANSNSTEPPKPTTVPLKKTISKL 601

Query:    63 SSNLTKPTVSA-SLKTTNSVPVT-----RRKSTGGLPEKSPASTTKQTITADSAVGKKTN 116
                   PTVS+ +  TT +VP T        +T   P  SP  T KQ I   + + K   
Sbjct:   602 PPRKLPPTVSSPTTTTTTTVPTTVPTTVTTTTTTTSPTTSPTLTPKQPI--GTTIKKPAT 659

Query:   117 TVLS-EPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISP 160
               L  +PV + LP+   SS  S  T PT+T +S   T   VP +P
Sbjct:   660 APLKLKPVAKPLPQPTPSSSTSTTTTPTTTPSSPKPT--PVPRTP 702

GO:0007165 "signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000004276 CTS1 "Endochitinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 49/165 (29%), Positives = 76/165 (46%)

Query:    20 SSVESAKKITKVGKPGVAATLKVSVAP--SSSIKKKTDPKSGSARSSNLTKPTVSASL-- 75
             SS  +++K T        +  KV+++P  SS+IK      + +  SS  TK ++  +   
Sbjct:   335 SSASTSQKKTTQSTTSTQSKSKVTLSPTASSAIKTSITQTTKTLTSSTKTKSSLGTTTTE 394

Query:    76 KTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPVRRSLPEIRRSSL 135
              T NSV +T  K+T      S A  T QT T          T ++     +L    +SS 
Sbjct:   395 STLNSVAITSMKTTLSSQITSAALVTPQTTTTSIVSSAPIQTAITS----TLSPATKSS- 449

Query:   136 PSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSDAKTETLKK 180
              SVV+  T+T +++S T  S   +  G + S ST SD+   TL K
Sbjct:   450 -SVVSLQTATTSTLSPTTTS---TSSGSTSSGSTSSDSTARTLAK 490

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0000272 "polysaccharide catabolic process" evidence=IEA

GO:0005618 "cell wall" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006032 "chitin catabolic process" evidence=IEA;IC

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004568 "chitinase activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0007109 "cytokinesis, completion of separation" evidence=IMP

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005935 "cellular bud neck" evidence=IDA

GO:0008843 "endochitinase activity" evidence=IDA

GO:0008061 "chitin binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

UNIPROTKB|P98088 MUC5AC "Mucin-5AC" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 0.00016, P = 0.00016
 Identities = 56/188 (29%), Positives = 83/188 (44%)

Query:     3 NPIVQTDEDPVEKQSPVSSVESAKKITKVGKPGVAATLKVSV--APSSSIKKKTDPKSGS 60
             +P+V   E P + QS  SS + ++  T V    + +T + S   AP++S    T P S  
Sbjct:  3059 SPLV--GEPPAQTQS-TSSWQKSRTTTLVTS-SITSTTQTSTTSAPTTS----TTPASIP 3110

Query:    61 ARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKS-PASTTKQTITADSAVGKKTNTVL 119
             + +S  T  T SA   +T S P T   ST      S P S+T    T  S +   T + +
Sbjct:  3111 STTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTTTSSAPTSSTTSAPTT-STISAPTTSTI 3169

Query:   120 SEPVRR--SLPEIRRSSLP-SVVTKPTSTRASVSQTRK-SVPISPVGRSLSKSTGSDAKT 175
             S P     S P    +S P S  + PT+   S   T   S PI+    + + ST S  +T
Sbjct:  3170 SAPTTSTTSAPTASTTSAPTSTSSAPTTNTTSAPTTSTTSAPITSTISAPTTSTTSTPQT 3229

Query:   176 ETLKKAST 183
              T+   +T
Sbjct:  3230 STISSPTT 3237

GO:0007155 "cell adhesion" evidence=NAS

GO:0007586 "digestion" evidence=NAS

GO:0005201 "extracellular matrix structural constituent" evidence=TAS

GO:0043205 "fibril" evidence=IDA

GO:0043206 "extracellular fibril organization" evidence=IDA

GO:0005796 "Golgi lumen" evidence=TAS

GO:0016266 "O-glycan processing" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

SGD|S000005535 TIR4 "Cell wall mannoprotein of the Srp1p/Tip1p family" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
 Identities = 48/174 (27%), Positives = 86/174 (49%)

Query:    17 SPVSSVESAKKITKVGKPGVAATLKVSVAPSSS--IKKKTDPKSGSARSSNL---TKPTV 71
             S  +S  +A   ++V    +A++   SVAPSSS  +     P S    SS++   +   V
Sbjct:   113 SLTTSSSAATSSSEVASSSIASSTSSSVAPSSSEVVSSSVAPSSSEVVSSSVAPSSSEVV 172

Query:    72 SASLKTTNSVPVTRR--KSTGGLPEKSPASTTKQTITADSAVGKKTNTVLSEPVRRSLPE 129
             S+S+ +++S   +     S+  +   S AS++ +   A S+V   ++ V+S  V  S  E
Sbjct:   173 SSSVASSSSEVASSSVAPSSSEVVSSSVASSSSEV--ASSSVAPSSSEVVSSSVAPSSSE 230

Query:   130 IRRSSLPSVVTKPTSTRASVSQTRKSVPISPVGRSLSKSTGSDAKTETLKKAST 183
             +  SS+ S  ++  S+  SV+ +   V  S V  S S++T S A T +   +S+
Sbjct:   231 VVSSSVASSSSEVASS--SVAPSSSEVVSSSVASSTSEATSSSAVTSSSAVSSS 282

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005618 "cell wall" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

SGD|S000001458 FLO11 "GPI-anchored cell surface glycoprotein (flocculin)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
 Identities = 54/188 (28%), Positives = 82/188 (43%)

Query:     4 PIVQTDEDPVEKQS-PVSSVESAKKITKVGKPGVAATLKVSVAP--SSSIKKKTDP-KSG 59
             P+        E  S PV+S  +      V  P  ++T + S AP  SS+ +  + P  S 
Sbjct:   328 PVPTPSSSTTESSSAPVTSSTTESSSAPVPTPS-SSTTESSSAPVTSSTTESSSAPVTSS 386

Query:    60 SARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSA-VGKKTNTV 118
             +  SS+   PT S+S   ++S PVT   ST    E S A  T  T  + SA V   T   
Sbjct:   387 TTESSSAPVPTPSSSTTESSSAPVT--SST---TESSSAPVTSSTTESSSAPVTSSTTES 441

Query:   119 LSEPVRRSLPEIRRSSLP---SVVTKPTSTRASVSQTRKS-VPISPVGRSLSKSTGSDAK 174
              S PV  S  E   + +P   S  T+ +S   + S T  S  P+     S ++S+ +   
Sbjct:   442 SSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVT 501

Query:   175 TETLKKAS 182
             + T + +S
Sbjct:   502 SSTTESSS 509

GO:0005576 "extracellular region" evidence=IEA;IDA

GO:0005935 "cellular bud neck" evidence=IDA

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0031225 "anchored to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005618 "cell wall" evidence=IEA

GO:0001403 "invasive growth in response to glucose limitation" evidence=IMP

GO:0007124 "pseudohyphal growth" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0030447 "filamentous growth" evidence=IDA

GO:0000128 "flocculation" evidence=IMP

GO:0042710 "biofilm formation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028406001 SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1717 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.004

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 296 PNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLEN 340
            NLE + L +N ++ L  +  L  ++ LDLS N        PL N
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKIT--DLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 25/240 (10%)

Query: 43  SVAPSSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTK 102
             +P +     T P + S R     + +   S   ++  P   R +       S  S++ 
Sbjct: 186 PSSPPAEPPPSTPPAAASPRPP---RRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242

Query: 103 QTITADSA------VGKKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSV 156
           ++            + +     L   +  +      SS P   +  +S R        S 
Sbjct: 243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSS 302

Query: 157 PISP--------VGRSLSKSTGSDAKTETLKKASTKPALSVASSSRRVSSMSLDSSGSNV 208
           P S            S S    S + T +  ++S   A+S   S  R  S S     ++ 
Sbjct: 303 PGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP 362

Query: 209 SRKTISKVSSPSVRSPSVSSGLRNGSLSSSL--------DRSSNLSGQRRAGTPQSKDSR 260
           S        S +  SP+ S+G      + +         D +      R   +P    + 
Sbjct: 363 SSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAA 422

Length = 1352

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 27/216 (12%), Positives = 50/216 (23%), Gaps = 18/216 (8%)

Query: 39   TLKVSVAPSSSIKKKTDPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPA 98
              ++         K   PK               +   +                +  P 
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPD 1214

Query: 99   STTKQTITADSAVGKKTNTVLSEP-VRRSLPEIRRSSLPSVVTKPTSTRA---------- 147
            +    +  +D    ++  T   +  V+R   +   SS  S      S+            
Sbjct: 1215 NKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNA 1274

Query: 148  -SVSQTRKSVPISPVGRSLSKSTGSDAKTETLKKASTKPALSVASSSRRVSSMSLDSSGS 206
                   +  P  P  R   +S G    +   KK   K        S         S   
Sbjct: 1275 PKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLE----GSLAALKKKKKSEKK 1330

Query: 207  NVSRKTISK--VSSPSVRSPSVSSGLRNGSLSSSLD 240
               +K        + + +S  +    R     SS +
Sbjct: 1331 TARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366

Length = 1388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.67
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
PLN03150	623	hypothetical protein; Provisional	98.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.55
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.51
PLN03150	623	hypothetical protein; Provisional	98.49
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.46
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.35
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.06
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.59
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.24
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.76
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.87
PRK15386	426	type III secretion protein GogB; Provisional	94.38
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.46
PRK15386	426	type III secretion protein GogB; Provisional	91.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.74
smart00370	26	LRR Leucine-rich repeats, outliers.	88.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.16
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.34
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	84.4
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.19

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=1e-13  Score=129.22  Aligned_cols=113  Identities=25%  Similarity=0.261  Sum_probs=98.7

Q ss_pred             CCccccccCCCCcccccccccchhccccccccccCCCceeecCcccccCCCcceEEecCCcCC--ccCccccCCCCCccE
Q 017047          223 SPSVSSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVR--SLIASGLNLQPNLEF  300 (378)
Q Consensus       223 s~~~s~~l~~~~l~~~l~rL~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~Ls--sL~~s~f~lL~nLe~  300 (378)
                      -++||++.+...|+.+|+||..|+.            +|..||.       |..|||.+|+|.  .++.+ |..+..|+.
T Consensus        72 p~~issl~klr~lnvgmnrl~~lpr------------gfgs~p~-------levldltynnl~e~~lpgn-ff~m~tlra  131 (264)
T KOG0617|consen   72 PTSISSLPKLRILNVGMNRLNILPR------------GFGSFPA-------LEVLDLTYNNLNENSLPGN-FFYMTTLRA  131 (264)
T ss_pred             ChhhhhchhhhheecchhhhhcCcc------------ccCCCch-------hhhhhccccccccccCCcc-hhHHHHHHH
Confidence            4678999999999999999888888            8888887       556999999997  46655 445589999


Q ss_pred             EEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCC-C-CCCCCCCCCCeeecccccccccc
Q 017047          301 VYLRDNMLSTL-EGIEILTRVKVLDLSFNDFK-G-PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       301 LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |||++|+|.-+ +.++.|++||.|.|.+|++- + .+++.|.+|++|++.+|+++.+.
T Consensus       132 lyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             HHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence            99999999999 89999999999999999977 5 78899999999999999998653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=3.5e-11  Score=109.91  Aligned_cols=110  Identities=19%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCC-CCCCC
Q 017047          243 SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIE-ILTRV  320 (378)
Q Consensus       243 ~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~-~LtnL  320 (378)
                      ..+.+-.+...+++++|+|..+......+.+|+.|||++|.|+.+.  ++..+..|+.|+|.+|+|+.+ +++. .|++|
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            3344455567889999999998876556788999999999999998  477789999999999999999 5564 68999


Q ss_pred             cEEeCCCCCCC-C---CCCCCCCCCCeeeccccccccc
Q 017047          321 KVLDLSFNDFK-G---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       321 q~LdLS~N~Ls-~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +.|+|++|+|. .   ..+..|++|+.|++.+|.++..
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            99999999998 3   4556778899999999999744

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=3.7e-10  Score=103.27  Aligned_cols=98  Identities=30%  Similarity=0.366  Sum_probs=33.4

Q ss_pred             ceeecCcccccCCCcceEEecCCcCCccCccccC-CCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCCC--CCC-
Q 017047          260 RFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG--PGF-  335 (378)
Q Consensus       260 rfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~-lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls~--~~f-  335 (378)
                      .|..+|+. .++..+++|+|.+|+|..|..  +. .+.+|+.|+|++|.|..+++|..|.+|+.|+|++|+|+.  ..+ 
T Consensus         8 ~i~~~~~~-~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen    8 MIEQIAQY-NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD   84 (175)
T ss_dssp             -----------------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH
T ss_pred             cccccccc-ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH
Confidence            34445543 345678999999999999974  43 468999999999999999999999999999999999993  334 


Q ss_pred             CCCCCCCeeeccccccccccccchh
Q 017047          336 EPLENCKALQFCSNCILLETKLHLL  360 (378)
Q Consensus       336 ~~L~nLk~LdLsnNrIs~i~~L~lL  360 (378)
                      ..|++|+.|++.+|+|..+..+..+
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L  109 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPL  109 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGG
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHH
Confidence            3588999999999999877665444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1.2e-09  Score=81.63  Aligned_cols=58  Identities=28%  Similarity=0.442  Sum_probs=51.9

Q ss_pred             CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047          273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       273 sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L  330 (378)
                      +|+.|+|++|+|+.++...|..+++|++|+|++|.|..+  ..|.+|++|++|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578899999999999988898889999999999999988  5788999999999999986

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.81  E-value=1.1e-09  Score=116.12  Aligned_cols=125  Identities=22%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             cCCCCcccccccccc-----hhccccccccccCCCceeecCccccc-CCCcceEEecCCcCCccCccccCCCCCccEEEc
Q 017047          230 LRNGSLSSSLDRSSN-----LSGQRRAGTPQSKDSRFIVLPQVEIK-AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYL  303 (378)
Q Consensus       230 l~~~~l~~~l~rL~s-----L~~~~~~~T~dlrdnrfs~LP~l~~K-lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdL  303 (378)
                      ....-|....+|..+     |......+++.+..|+++.+|.-.+| +.+|+.|||..|+|+-+....|+.++.|+.|.|
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            333444444444433     44444678888999999999999887 999999999999999887777888888888888


Q ss_pred             CCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          304 RDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       304 s~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ..|+|..+  ..|..|.++++|+|..|+|+.   .++.+|..|+.|++++|.|..+
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence            88888888  667888888888888888882   5667788888888888877643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.80  E-value=2.8e-09  Score=113.00  Aligned_cols=106  Identities=21%  Similarity=0.282  Sum_probs=76.9

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      .|.--.-++.|.+..+|......++|+.|+|.+|.|+.+....+..++.|+.|||+.|.|+.+  +.|..-.+|++|+|+
T Consensus       102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La  181 (873)
T KOG4194|consen  102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA  181 (873)
T ss_pred             CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence            333344466777777777666666777888888888877777777777777778877777777  567777777788888


Q ss_pred             CCCCC-C--CCCCCCCCCCeeeccccccccc
Q 017047          327 FNDFK-G--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls-~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|+ .  ..|..|.+|..|.|.+|+|+.+
T Consensus       182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  182 SNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             cccccccccccccccchheeeecccCccccc
Confidence            88777 2  6677777777777777777654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.78  E-value=7e-09  Score=112.84  Aligned_cols=109  Identities=21%  Similarity=0.225  Sum_probs=79.8

Q ss_pred             hhccccccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      +....+...+++.+|.|. .+|..+.++.+|++|||++|+|.+..+..+..+.+|+.|+|.+|.|.+.  ..|..+++|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            344455666777777664 5666666777788888888887766666677777888888888887754  5677888888


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeecccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      +|+|++|++.+   ..|..|.+|+.|++.+|.|..
T Consensus       240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             EEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            88888888773   567778888888888887764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.78  E-value=7.2e-09  Score=112.72  Aligned_cols=110  Identities=16%  Similarity=0.131  Sum_probs=90.3

Q ss_pred             hhccccccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      +....+..++++.+|++. .+|..+.++.+|+.|+|++|++.+..+..+..+++|+.|+|.+|.|.+.  ..|..+++|+
T Consensus       184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            445566777888888876 4677777888999999999999877666778889999999999998765  6788999999


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      .|+|++|.|.+   ..|..+.+|+.|++.+|.|...
T Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             EEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence            99999999874   5678889999999999988643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.75  E-value=4.7e-10  Score=119.57  Aligned_cols=109  Identities=22%  Similarity=0.284  Sum_probs=86.4

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL  323 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L  323 (378)
                      |...||..-.|+.+|.+..+|++.+++.+|+.|+|++|+|+.+.-. .....+|+.|+|+.|+|+.+ .+++.|++|+.|
T Consensus       218 ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence            4445566678999999999999999999999999999999988643 23336788899999988888 677888888888


Q ss_pred             eCCCCCCC--C--CCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFK--G--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls--~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ++.+|+|.  +  .+++.|.+|+.+.+.+|.|..+
T Consensus       297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV  331 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV  331 (1255)
T ss_pred             HhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence            88888877  2  6677777777777777776644

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.67  E-value=1.5e-09  Score=101.57  Aligned_cols=95  Identities=26%  Similarity=0.286  Sum_probs=48.9

Q ss_pred             CCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC--c-ccCCCCCCCcEEeCCCCCCC-C
Q 017047          257 KDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST--L-EGIEILTRVKVLDLSFNDFK-G  332 (378)
Q Consensus       257 rdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~--L-~~f~~LtnLq~LdLS~N~Ls-~  332 (378)
                      .+|++..+|..+..+..|+.|++.-|+|..++. +|+.++.|++|||.+|.+..  + ..|..++-|+.|||++|+|+ +
T Consensus        64 ~nnqie~lp~~issl~klr~lnvgmnrl~~lpr-gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l  142 (264)
T KOG0617|consen   64 SNNQIEELPTSISSLPKLRILNVGMNRLNILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL  142 (264)
T ss_pred             ccchhhhcChhhhhchhhhheecchhhhhcCcc-ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC
Confidence            344444444444444444444444444444433 34445555555555555543  2 34555555555556666655 2


Q ss_pred             -CCCCCCCCCCeeeccccccc
Q 017047          333 -PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       333 -~~f~~L~nLk~LdLsnNrIs  352 (378)
                       .+++.|.+|+.|.+.+|.+-
T Consensus       143 p~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             ChhhhhhcceeEEeeccCchh
Confidence             55666666666666666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.66  E-value=2.7e-09  Score=113.88  Aligned_cols=99  Identities=23%  Similarity=0.237  Sum_probs=82.4

Q ss_pred             cccCCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC
Q 017047          254 PQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND  329 (378)
Q Consensus       254 ~dlrdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~  329 (378)
                      .+.|+|.+.+  +|..++++.+|..|||++|+|+..|.+ +....++-+|+|++|+|..|  .-|.+|+-|-.|||++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            3457777765  888888999999999999999988864 55558899999999999998  557889999999999999


Q ss_pred             CC-C-CCCCCCCCCCeeecccccccc
Q 017047          330 FK-G-PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       330 Ls-~-~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      |. + +.+..|.+|+.|+|++|.|..
T Consensus       162 Le~LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  162 LEMLPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             hhhcCHHHHHHhhhhhhhcCCChhhH
Confidence            98 4 777888899999999998753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=2.1e-08  Score=74.95  Aligned_cols=56  Identities=32%  Similarity=0.513  Sum_probs=51.9

Q ss_pred             CCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeecccccc
Q 017047          296 PNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCI  351 (378)
Q Consensus       296 ~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrI  351 (378)
                      ++|+.|+|.+|+|..+  ..|..+++|++|+|++|.|+.   ..|..|.+|++|++.+|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999999  578999999999999999993   7899999999999999986

...

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=7.4e-08  Score=102.48  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             ccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC
Q 017047          255 QSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK  331 (378)
Q Consensus       255 dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls  331 (378)
                      ++.+|.|. .+|..+.++.+|+.|+|++|+|.+..+..+..+++|+.|+|++|+|.+.  ..+..|.+|+.|+|++|+|+
T Consensus       424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            33344333 2444444445555555555555543333344445555555555555433  33455555555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=1.3e-08  Score=102.25  Aligned_cols=111  Identities=23%  Similarity=0.261  Sum_probs=71.8

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      |........+++.+|+|..+...+..+.+|++|||++|+|+.+..  +..+..|+.|++.+|.|..+.+|..+.+|+.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhccc
Confidence            444455555666677666666644456667777777777777663  455556777777777777776666677777777


Q ss_pred             CCCCCCCC-CC--CCCCCCCCeeecccccccccccc
Q 017047          325 LSFNDFKG-PG--FEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       325 LS~N~Ls~-~~--f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      |++|+|.. ..  ...+.+|+.|++.+|.|..+..+
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~  204 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSIREIEGL  204 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCchhcccch
Confidence            77777763 33  36666677777777776655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.56  E-value=1.4e-08  Score=101.56  Aligned_cols=110  Identities=22%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCccc-CCCCCCCc
Q 017047          243 SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG-IEILTRVK  321 (378)
Q Consensus       243 ~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~-f~~LtnLq  321 (378)
                      ..+..++..-++|+.+|.|..|-....-+..++.|+|++|.|..+..  +..+.+|+.|||++|.|+.+.+ -..|.|++
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIK  355 (490)
T ss_pred             EecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence            34556778888899988877776655556778999999999998874  6777899999999999988844 46788888


Q ss_pred             EEeCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|.|++|.|. +.+++.|-.|.+||+.+|+|...
T Consensus       356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             eeehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence            8888888888 57777788888888888888643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.55  E-value=8.7e-09  Score=113.17  Aligned_cols=104  Identities=23%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             hccccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      .+-.+...+++.+|++..||.... |+.+|+.|+|+||+|+.|+.. ...|..|+.|...+|+|..++.+..+..|++||
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD  458 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence            333445566677777777776544 666777777777777777743 334466777777777777777777888888888


Q ss_pred             CCCCCCCC---CCCCCCCCCCeeeccccc
Q 017047          325 LSFNDFKG---PGFEPLENCKALQFCSNC  350 (378)
Q Consensus       325 LS~N~Ls~---~~f~~L~nLk~LdLsnNr  350 (378)
                      |+.|+|+.   ..-....+|++||+.+|.
T Consensus       459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhhhCCCcccceeeccCCc
Confidence            88888882   333444788888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.51  E-value=9.1e-09  Score=105.49  Aligned_cols=95  Identities=25%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             cCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC--
Q 017047          256 SKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG--  332 (378)
Q Consensus       256 lrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~--  332 (378)
                      ++.|++..+| .+..|..|.+|.+..|+|.-++......+..|..|||++|+|..+ .+++-|++|.+|||++|.|+.  
T Consensus       213 L~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  213 LRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             hhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence            4555555555 233455555555555555555555554556666777777777666 566666777777777777773  


Q ss_pred             CCCCCCCCCCeeeccccccc
Q 017047          333 PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       333 ~~f~~L~nLk~LdLsnNrIs  352 (378)
                      ..+++| +|+.|.+.+|.|.
T Consensus       292 ~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  292 YSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cccccc-eeeehhhcCCchH
Confidence            566666 6777777777664

>PLN03150 hypothetical protein; Provisional

Probab=98.49  E-value=1.6e-07  Score=99.90  Aligned_cols=82  Identities=23%  Similarity=0.355  Sum_probs=73.5

Q ss_pred             cceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeeccc
Q 017047          274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCS  348 (378)
Q Consensus       274 L~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsn  348 (378)
                      +..|+|++|.|.+..+..+..+.+|+.|+|++|.|.+.  ..|..|.+|+.|||++|+|.+   ..|+.|.+|+.|+|.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67899999999987777788889999999999999865  579999999999999999995   5689999999999999


Q ss_pred             ccccccc
Q 017047          349 NCILLET  355 (378)
Q Consensus       349 NrIs~i~  355 (378)
                      |.|.+..
T Consensus       500 N~l~g~i  506 (623)
T PLN03150        500 NSLSGRV  506 (623)
T ss_pred             CcccccC
Confidence            9988543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.46  E-value=5.1e-08  Score=99.72  Aligned_cols=92  Identities=22%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCe
Q 017047          269 IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKA  343 (378)
Q Consensus       269 ~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~  343 (378)
                      .++.+|+.|+|++|+|+.|.+..|..+..|++|+|..|+|..+  ..|.++.+|+.|+|.+|+|+.   ..|..+..|..
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            4788999999999999999999999999999999999999999  678999999999999999993   78899999999


Q ss_pred             eeccccccccccccchh
Q 017047          344 LQFCSNCILLETKLHLL  360 (378)
Q Consensus       344 LdLsnNrIs~i~~L~lL  360 (378)
                      |++..|.+.....+.|+
T Consensus       351 l~l~~Np~~CnC~l~wl  367 (498)
T KOG4237|consen  351 LNLLSNPFNCNCRLAWL  367 (498)
T ss_pred             eehccCcccCccchHHH
Confidence            99999999877766544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=8e-08  Score=96.57  Aligned_cols=100  Identities=26%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             cCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-CCC
Q 017047          256 SKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-GPG  334 (378)
Q Consensus       256 lrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~~~  334 (378)
                      ++.|.+..+-.....+.+|+.|+|.+|+|..+... +..+.+|++|+|++|+|..+.++..|..|+.|++.+|.|. ..+
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~  157 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG  157 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccchhhccchhhheeccCcchhccC
Confidence            66666665444455678899999999999999842 5667999999999999999999999999999999999999 588


Q ss_pred             CCCCCCCCeeeccccccccccc
Q 017047          335 FEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       335 f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      |..|.+|+.|++.+|+|..+..
T Consensus       158 ~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  158 LESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             CccchhhhcccCCcchhhhhhh
Confidence            8889999999999999997766

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.43  E-value=3.8e-08  Score=101.03  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             cCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCC-----------------------Cc-
Q 017047          256 SKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS-----------------------TL-  311 (378)
Q Consensus       256 lrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs-----------------------~L-  311 (378)
                      +++|.+..+|..+..+.+|..|+|++|.|..+|...+.. ..|+.|+|+.|+|.                       .+ 
T Consensus       419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~l-v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd  497 (565)
T KOG0472|consen  419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSL-VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD  497 (565)
T ss_pred             hhcCccccchHHHHhhhcceeeecccchhhhcchhhhhh-hhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence            455555444544455666666666666666666554433 44666666666554                       33 


Q ss_pred             -ccCCCCCCCcEEeCCCCCCCC--CCCCCCCCCCeeecccccccc
Q 017047          312 -EGIEILTRVKVLDLSFNDFKG--PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       312 -~~f~~LtnLq~LdLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~  353 (378)
                       .++.++.+|.+|||.+|+|..  +++++|.+|++|++.+|.|..
T Consensus       498 ~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  498 PSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence             247789999999999999993  899999999999999999983

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.37  E-value=4.4e-07  Score=99.56  Aligned_cols=91  Identities=18%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             ccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-C-
Q 017047          255 QSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-G-  332 (378)
Q Consensus       255 dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~-  332 (378)
                      ++.+|+|..+|..   ...|..|+|++|+|..++..    ..+|+.|+|++|+|..++.+  +.+|+.|+|++|+|+ + 
T Consensus       368 ~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP  438 (788)
T PRK15387        368 WAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLP  438 (788)
T ss_pred             hhhccccccCccc---ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccC
Confidence            3455555555543   23577777888877776631    25688888888888877543  357888999999998 4 


Q ss_pred             CCCCCCCCCCeeeccccccccc
Q 017047          333 PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       333 ~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ..|+.|.+|..|+|.+|.|+..
T Consensus       439 ~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        439 ESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hHHhhccCCCeEECCCCCCCch
Confidence            5678899999999999999854

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=1.1e-08  Score=110.66  Aligned_cols=116  Identities=24%  Similarity=0.194  Sum_probs=88.4

Q ss_pred             cccccccc----chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc
Q 017047          236 SSSLDRSS----NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL  311 (378)
Q Consensus       236 ~~~l~rL~----sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L  311 (378)
                      +-+-+||.    +|....-...+++++|+|...- .+..+.+|++|||++|+|+.++......|. |+.|.|++|.++.+
T Consensus       170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL  247 (1096)
T ss_pred             hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh
Confidence            33445553    3444455566788888888776 344678899999999999998876665655 99999999999999


Q ss_pred             ccCCCCCCCcEEeCCCCCCCC----CCCCCCCCCCeeecccccccc
Q 017047          312 EGIEILTRVKVLDLSFNDFKG----PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       312 ~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      .++.+|.+|+.|||++|-|..    .-+..|..|..|+|.+|.|-+
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            899999999999999998883    344556678888999998753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.35  E-value=7.3e-08  Score=96.43  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND  329 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~  329 (378)
                      +...+++.+|++..+-. ...+.+|+.|||++|.|..+...... +.|++.|.|.+|.|..+.++..|-.|..||+++|+
T Consensus       308 kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K-LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  308 KLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK-LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             ceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhh-hcCEeeeehhhhhHhhhhhhHhhhhheeccccccc
Confidence            34456678888887766 44578899999999999999865443 58999999999999999999999999999999999


Q ss_pred             CCC----CCCCCCCCCCeeecccccccccc
Q 017047          330 FKG----PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       330 Ls~----~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |..    .+++.|+.|+.|.|.+|.|..+.
T Consensus       386 Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  386 IEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            993    78999999999999999998653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.32  E-value=1e-06  Score=96.78  Aligned_cols=75  Identities=21%  Similarity=0.250  Sum_probs=38.7

Q ss_pred             ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccC-----------------CCCCccEEEcCCCCCCCccc
Q 017047          251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLN-----------------LQPNLEFVYLRDNMLSTLEG  313 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~-----------------lL~nLe~LdLs~NkLs~L~~  313 (378)
                      ...+++.+|+|..+|..   +.+|++|+|++|+|+.++.. +.                 .+.+|+.|+|.+|+|..++.
T Consensus       224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~  299 (788)
T PRK15387        224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV  299 (788)
T ss_pred             CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc-ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence            34445555666666542   34566666666666655421 00                 11234444444444444422


Q ss_pred             CCCCCCCcEEeCCCCCCC
Q 017047          314 IEILTRVKVLDLSFNDFK  331 (378)
Q Consensus       314 f~~LtnLq~LdLS~N~Ls  331 (378)
                        .+.+|+.|+|++|+|+
T Consensus       300 --~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        300 --LPPGLQELSVSDNQLA  315 (788)
T ss_pred             --cccccceeECCCCccc
Confidence              2356777777777766

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=2.4e-08  Score=107.95  Aligned_cols=94  Identities=23%  Similarity=0.292  Sum_probs=54.3

Q ss_pred             CCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccC--CCCCCCcEEeCCCCCCC-CCCCCCCCCCCeeeccc
Q 017047          272 GDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGI--EILTRVKVLDLSFNDFK-GPGFEPLENCKALQFCS  348 (378)
Q Consensus       272 ssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f--~~LtnLq~LdLS~N~Ls-~~~f~~L~nLk~LdLsn  348 (378)
                      ..|+.|||++|++....  ++..|+.|+.|||+.|.|..++.|  .+|. |+.|.|++|.++ +.++.+|.+|+.||+++
T Consensus       187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhH
Confidence            34555666666666555  344456666666666666655333  2333 666666666666 45566666666666666


Q ss_pred             cccccccccchhhccCCCCchhHhhhhc
Q 017047          349 NCILLETKLHLLEASQSFPIWSFSLLLK  376 (378)
Q Consensus       349 NrIs~i~~L~lL~~l~~FPiws~~~L~~  376 (378)
                      |.|..-        ..--|.|.+..|.+
T Consensus       264 Nll~~h--------seL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  264 NLLSEH--------SELEPLWSLSSLIV  283 (1096)
T ss_pred             hhhhcc--------hhhhHHHHHHHHHH
Confidence            666533        23446677776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.30  E-value=6.5e-08  Score=106.51  Aligned_cols=97  Identities=25%  Similarity=0.247  Sum_probs=84.4

Q ss_pred             CCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCC-C
Q 017047          257 KDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFK-G  332 (378)
Q Consensus       257 rdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls-~  332 (378)
                      .||.|..  +|. +....+|+.|+|+||+|..++...+..+..|++|+|++|+|+.+ ..+..|..|++|...+|+|. .
T Consensus       367 anN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f  445 (1081)
T KOG0618|consen  367 ANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF  445 (1081)
T ss_pred             hcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec
Confidence            3444443  443 33466799999999999999999999999999999999999999 78899999999999999999 5


Q ss_pred             CCCCCCCCCCeeeccccccccc
Q 017047          333 PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       333 ~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +.+..+.+|+.||+++|.|+.+
T Consensus       446 Pe~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  446 PELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             hhhhhcCcceEEecccchhhhh
Confidence            8999999999999999999865

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.27  E-value=8.8e-08  Score=98.04  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC-CCC
Q 017047          252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL-SFN  328 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL-S~N  328 (378)
                      ...|.++.++..+|...  +.+.+.|+|..|+|+.|++..|..++.|+.|||++|+|+.|  .+|.+|.+|..|-| ++|
T Consensus        49 ~~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             ceEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            44556666777777532  23456677777777777777777777777777777777777  56777777655444 347


Q ss_pred             CCC-C--CCCCCCCCCCeeeccccccccc
Q 017047          329 DFK-G--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls-~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+ +  ..|++|..|+.|.+.-|+|..+
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Ci  155 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCI  155 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence            777 2  5666676777776666666644

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.23  E-value=4.5e-07  Score=84.96  Aligned_cols=83  Identities=27%  Similarity=0.306  Sum_probs=39.1

Q ss_pred             cCCCcceEEecCCcCCccC----ccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCCC---CC--
Q 017047          270 KAGDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKG---PG--  334 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~----~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls~---~~--  334 (378)
                      .+..|+.|+|++|.|..-.    ...+..+++|+.|+|++|.|...      ..+..+++|++|+|++|.|+.   ..  
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence            3345555666665555210    00122224566666666655432      233445556666666665551   00  


Q ss_pred             ---CCCCCCCCeeeccccccc
Q 017047          335 ---FEPLENCKALQFCSNCIL  352 (378)
Q Consensus       335 ---f~~L~nLk~LdLsnNrIs  352 (378)
                         ...+..|+.|++.+|.|+
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHhccCCCceEEEccCCCCC
Confidence               012345556666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.18  E-value=1.1e-06  Score=83.46  Aligned_cols=101  Identities=18%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCC-CCCCcEEeCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEI-LTRVKVLDLSF  327 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~-LtnLq~LdLS~  327 (378)
                      +..-.++|+.++..+-.+..-......+||+.|.|..+.  .|..++.|..|+|.+|+|+.| +.+.. +++|..|.|.+
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            344444555544433332222223444555555555444  244445555555555555555 44432 23455555555


Q ss_pred             CCCC-C---CCCCCCCCCCeeeccccccc
Q 017047          328 NDFK-G---PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       328 N~Ls-~---~~f~~L~nLk~LdLsnNrIs  352 (378)
                      |.|. +   ..+..|++|++|.+.+|.++
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchh
Confidence            5555 1   33334445555555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.16  E-value=2.4e-06  Score=81.28  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCC
Q 017047          251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSF  327 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~  327 (378)
                      .-+.|++||.+..++.. ..+..|.+|+|.+|+|+.|.+.....+++|..|.|.+|.|..+   ..+..|+.|++|.|-+
T Consensus        44 ~d~iDLtdNdl~~l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cceecccccchhhcccC-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            34567889988877653 3466799999999999999987777789999999999999887   5678899999999999


Q ss_pred             CCCCC------CCCCCCCCCCeeecccc
Q 017047          328 NDFKG------PGFEPLENCKALQFCSN  349 (378)
Q Consensus       328 N~Ls~------~~f~~L~nLk~LdLsnN  349 (378)
                      |.++.      .-+..+++|+.||+..-
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhh
Confidence            99983      56778889999988763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.16  E-value=3.3e-06  Score=92.41  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=54.4

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc-cCCCCCCCcEEeCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFN  328 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~-~f~~LtnLq~LdLS~N  328 (378)
                      +..++++.+|+|..+|....  ..|+.|+|++|+|..++...   ..+|+.|+|++|+|..++ .+.  .+|+.|+|++|
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N  293 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDN  293 (754)
T ss_pred             CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEECCCC
Confidence            44555666666666665332  24666666666666655422   235666777766666652 232  46677777777


Q ss_pred             CCCC-C-CCCCCCCCCeeeccccccccc
Q 017047          329 DFKG-P-GFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls~-~-~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+. + .+.  ..|+.|++.+|.|..+
T Consensus       294 ~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        294 SIRTLPAHLP--SGITHLNVQSNSLTAL  319 (754)
T ss_pred             ccccCcccch--hhHHHHHhcCCccccC
Confidence            6662 1 121  3566666777766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.08  E-value=6.7e-07  Score=83.83  Aligned_cols=82  Identities=22%  Similarity=0.269  Sum_probs=46.7

Q ss_pred             CCcceEEecCCcCCccC----ccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCCC-------CC
Q 017047          272 GDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKG-------PG  334 (378)
Q Consensus       272 ssL~~LDLSgN~LssL~----~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls~-------~~  334 (378)
                      .+|+.|+|++|.|..-.    ...+..+..|+.|+|.+|.|..-      ..+..+++|+.|+|++|.|..       ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            45666666666666211    11233345666666666666521      234445567777777776651       23


Q ss_pred             CCCCCCCCeeecccccccc
Q 017047          335 FEPLENCKALQFCSNCILL  353 (378)
Q Consensus       335 f~~L~nLk~LdLsnNrIs~  353 (378)
                      +..+.+|+.|++.+|.|..
T Consensus       217 ~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             hcccCCCCEEecCCCcCch
Confidence            4556667777777776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.06  E-value=4.1e-07  Score=96.49  Aligned_cols=121  Identities=21%  Similarity=0.186  Sum_probs=97.2

Q ss_pred             CCCCcccccccccchhccccc---cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC
Q 017047          231 RNGSLSSSLDRSSNLSGQRRA---GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM  307 (378)
Q Consensus       231 ~~~~l~~~l~rL~sL~~~~~~---~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk  307 (378)
                      ..-.+....++|+.|+..-..   ..+++.+|++..+|..+.-+..|..||.++|+|..++.. ++.+..|+.|.+..|+
T Consensus       122 ~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  122 ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNH  200 (722)
T ss_pred             HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhh
Confidence            334455556666666665443   345678999999999888777899999999999999875 4556889999999999


Q ss_pred             CCCc-ccCCCCCCCcEEeCCCCCCC-C-CCCCCCCCCCeeecccccccc
Q 017047          308 LSTL-EGIEILTRVKVLDLSFNDFK-G-PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       308 Ls~L-~~f~~LtnLq~LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      +..+ +.+..| .|..||+++|+|. + .+|.+|.+|++|.|.+|.|..
T Consensus       201 l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  201 LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            9888 667744 5999999999999 5 789999999999999999863

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.03  E-value=8.6e-06  Score=89.21  Aligned_cols=96  Identities=20%  Similarity=0.192  Sum_probs=71.1

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N  328 (378)
                      ....+++.+|+|..+|....  .+|+.|+|++|+|..++...   ..+|+.|+|++|.|..+ ..+  ..+|+.|+|++|
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N  272 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERL--PSALQSLDLFHN  272 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhH--hCCCCEEECcCC
Confidence            45667778888888886544  46888888888888876432   24688888888888877 333  257999999999


Q ss_pred             CCCC--CCCCCCCCCCeeeccccccccc
Q 017047          329 DFKG--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+.  ..+.  .+|+.|++++|+|+.+
T Consensus       273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        273 KISCLPENLP--EELRYLSVYDNSIRTL  298 (754)
T ss_pred             ccCccccccC--CCCcEEECCCCccccC
Confidence            9983  3333  5899999999998854

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.93  E-value=7.4e-06  Score=80.61  Aligned_cols=101  Identities=26%  Similarity=0.247  Sum_probs=77.3

Q ss_pred             ccccccccCCCceeecCcccccCC-CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccC-CCCCCCcEEeCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAG-DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGI-EILTRVKVLDLS  326 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~Kls-sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f-~~LtnLq~LdLS  326 (378)
                      .....+++.+|.+..+|....... +|+.||+++|.|..++. .+..+++|+.|++.+|+|..++.. +.+.+|+.|+++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhh-hhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence            456667778888888888777774 88888888888888852 256678888888888888888444 488888888888


Q ss_pred             CCCCC-CCCC-CCCCCCCeeeccccc
Q 017047          327 FNDFK-GPGF-EPLENCKALQFCSNC  350 (378)
Q Consensus       327 ~N~Ls-~~~f-~~L~nLk~LdLsnNr  350 (378)
                      +|+|. .+.. ..+.+|+.|.+.+|.
T Consensus       195 ~N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         195 GNKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             CCccccCchhhhhhhhhhhhhhcCCc
Confidence            88888 4333 455668888888884

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.92  E-value=4.4e-06  Score=82.18  Aligned_cols=108  Identities=21%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCC-CCcccCCCCCCCcEEe
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML-STLEGIEILTRVKVLD  324 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkL-s~L~~f~~LtnLq~Ld  324 (378)
                      ....+...+++.+|.+..+|....++..|..|++++|+|+.++... ..+..|++|++.+|.+ .-+..+..+.+|..|+
T Consensus       160 ~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~  238 (394)
T COG4886         160 RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELLSSLSNLKNLSGLE  238 (394)
T ss_pred             hccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence            3344445555566666666655545556666666666666665421 1223455555555532 2223344444444444


Q ss_pred             CCCCCCCC--CCCCCCCCCCeeeccccccccc
Q 017047          325 LSFNDFKG--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       325 LS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +.+|++..  ..+..+.+|+.|++.+|.|+.+
T Consensus       239 l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         239 LSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cCCceeeeccchhccccccceecccccccccc
Confidence            44444442  3344444455555555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.2e-05  Score=57.94  Aligned_cols=36  Identities=33%  Similarity=0.411  Sum_probs=14.7

Q ss_pred             cceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC
Q 017047          274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST  310 (378)
Q Consensus       274 L~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~  310 (378)
                      |++|+|++|+|+.+++ .+..|++|+.|+|++|+|+.
T Consensus         3 L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    3 LEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             -SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             ceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            4444444444444443 13334444444444444443

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.86  E-value=7.3e-07  Score=94.66  Aligned_cols=78  Identities=22%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCC
Q 017047          252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~L  330 (378)
                      ..+++++|.|..+|..++.+..|.+|||+.|+|..++...+. |+ |++|.+.+|+|+.+ +.++.+..|..||.+.|+|
T Consensus       101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             HHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc-Cc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence            345567788888888888888899999999999998876444 35 99999999999888 7788888888888888887


Q ss_pred             C
Q 017047          331 K  331 (378)
Q Consensus       331 s  331 (378)
                      .
T Consensus       179 ~  179 (722)
T KOG0532|consen  179 Q  179 (722)
T ss_pred             h
Confidence            7

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=2.5e-05  Score=56.37  Aligned_cols=36  Identities=31%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             CCccEEEcCCCCCCCccc-CCCCCCCcEEeCCCCCCC
Q 017047          296 PNLEFVYLRDNMLSTLEG-IEILTRVKVLDLSFNDFK  331 (378)
Q Consensus       296 ~nLe~LdLs~NkLs~L~~-f~~LtnLq~LdLS~N~Ls  331 (378)
                      ++|++|+|.+|+|+.++. |..|++|++|||++|+|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            479999999999999965 999999999999999987

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=1.5e-06  Score=79.03  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             cccCCCceeecCcccc---cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCC
Q 017047          254 PQSKDSRFIVLPQVEI---KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFND  329 (378)
Q Consensus       254 ~dlrdnrfs~LP~l~~---KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~  329 (378)
                      +|+..|.+..+++...   +..+|..++|++|.|..+++.+....+.++.|+|.+|.|..+ ..|..++.|+.|++++|.
T Consensus        32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP  111 (177)
T ss_pred             cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc
Confidence            4556676776776654   566788889999999998887666667899999999999998 668999999999999999


Q ss_pred             CCC--CCCCCCCCCCeeeccccccccc
Q 017047          330 FKG--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       330 Ls~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |..  .-|..|.+|.+|+..+|.+..+
T Consensus       112 l~~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  112 LNAEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             cccchHHHHHHHhHHHhcCCCCccccC
Confidence            983  4556688899999988887644

>PLN03210 Resistant to P

Probab=97.59  E-value=0.00013  Score=82.80  Aligned_cols=99  Identities=23%  Similarity=0.238  Sum_probs=51.8

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCc-CCccCccccCCCCCccEEEcCCCC-CCCc-ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRDNM-LSTL-EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L-~~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|++..+|.....+.+|+.|+|++|. +..++.  +..+++|+.|+|.+|. +..+ ..+..|.+|+.|+|
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            34444555555555555554455556666665532 444442  4444566666665543 3334 44556666666666


Q ss_pred             CCC-CCC-CCCCCCCCCCCeeecccc
Q 017047          326 SFN-DFK-GPGFEPLENCKALQFCSN  349 (378)
Q Consensus       326 S~N-~Ls-~~~f~~L~nLk~LdLsnN  349 (378)
                      ++| .++ .+....+.+|+.|++.+|
T Consensus       689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        689 SRCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCcCccCCcCCCCCCCEEeCCCC
Confidence            653 333 222225666666666665

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=97.59  E-value=0.0002  Score=81.42  Aligned_cols=98  Identities=15%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCCcccCCCCCCCcEEeCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLEGIEILTRVKVLDLSFN  328 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L~~f~~LtnLq~LdLS~N  328 (378)
                      +...++..++.+..+|..+ .+.+|+.|+|.+|+|..+... +..+++|+.|+|++|. +..++.+..+++|+.|+|++|
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC  667 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence            3445555666677777643 456778888888888777543 4556778888887653 555677777788888888776


Q ss_pred             CC-C-C-CCCCCCCCCCeeecccc
Q 017047          329 DF-K-G-PGFEPLENCKALQFCSN  349 (378)
Q Consensus       329 ~L-s-~-~~f~~L~nLk~LdLsnN  349 (378)
                      .. . . ..|..|.+|+.|++.+|
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCC
Confidence            43 3 2 56677777888887764

syringae 6; Provisional

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=8.2e-06  Score=81.18  Aligned_cols=94  Identities=23%  Similarity=0.184  Sum_probs=72.5

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdL  325 (378)
                      ++..-+.++++++..|--+ .+...|..|.|+-|.|+.|.+  |..|..|++|||+.|.|..+   ..+.+|++|+.|+|
T Consensus        19 ~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444556777877766532 356778999999999999986  77889999999999999888   55688999999999


Q ss_pred             CCCCCCC--------CCCCCCCCCCeee
Q 017047          326 SFNDFKG--------PGFEPLENCKALQ  345 (378)
Q Consensus       326 S~N~Ls~--------~~f~~L~nLk~Ld  345 (378)
                      ..|-..+        ..+..|+||+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998773        2344566776664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00011  Score=76.44  Aligned_cols=86  Identities=17%  Similarity=0.115  Sum_probs=46.5

Q ss_pred             CCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCC-C--CC------CCCC
Q 017047          271 AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFK-G--PG------FEPL  338 (378)
Q Consensus       271 lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls-~--~~------f~~L  338 (378)
                      +..|..|+|.+|..-.+....+..+..|+.|||++|.|-..   ..++.|++|..|+++.+.|. .  .+      ...+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            34555666666643222222233344566666666666544   34556666666666666666 1  11      2345


Q ss_pred             CCCCeeeccccccccccc
Q 017047          339 ENCKALQFCSNCILLETK  356 (378)
Q Consensus       339 ~nLk~LdLsnNrIs~i~~  356 (378)
                      .+|++|++..|.|..|..
T Consensus       301 ~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  301 PKLEYLNISENNIRDWRS  318 (505)
T ss_pred             ccceeeecccCccccccc
Confidence            566666666666655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00029  Score=68.81  Aligned_cols=86  Identities=24%  Similarity=0.179  Sum_probs=58.9

Q ss_pred             ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC---c-ccCCCCCCCcEEeCCCCCCC-C---CCCCCC
Q 017047          267 VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST---L-EGIEILTRVKVLDLSFNDFK-G---PGFEPL  338 (378)
Q Consensus       267 l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~---L-~~f~~LtnLq~LdLS~N~Ls-~---~~f~~L  338 (378)
                      +......|..|.+.+-.++.+.  .|-.+++|+.|.|++|.+..   + .-...+++|++|+|++|+|. .   ..+..|
T Consensus        38 l~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            3345566777777777777776  36667888888888884432   2 23345688888888888888 3   445566


Q ss_pred             CCCCeeeccccccccc
Q 017047          339 ENCKALQFCSNCILLE  354 (378)
Q Consensus       339 ~nLk~LdLsnNrIs~i  354 (378)
                      .+|..|++.+|..+..
T Consensus       116 ~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNL  131 (260)
T ss_pred             cchhhhhcccCCcccc
Confidence            6777788888776643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00034  Score=68.30  Aligned_cols=77  Identities=27%  Similarity=0.285  Sum_probs=58.3

Q ss_pred             cCCCcceEEecCCcCC---ccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCCC------CCCCC
Q 017047          270 KAGDDVRLDLRGHRVR---SLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFKG------PGFEP  337 (378)
Q Consensus       270 KlssL~~LDLSgN~Ls---sL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls~------~~f~~  337 (378)
                      ++++|+.|+|+.|.++   +++.. ...+++|++|+|++|+|.-+   +.+..+.+|..|||.+|..+.      ..|.-
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             CcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            3567999999999444   23322 23459999999999999865   778888999999999998873      45667


Q ss_pred             CCCCCeeecc
Q 017047          338 LENCKALQFC  347 (378)
Q Consensus       338 L~nLk~LdLs  347 (378)
                      |.+|++|+-.
T Consensus       142 l~~L~~LD~~  151 (260)
T KOG2739|consen  142 LPSLKYLDGC  151 (260)
T ss_pred             hhhhcccccc
Confidence            7777777643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.88  E-value=7.6e-05  Score=68.10  Aligned_cols=88  Identities=23%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             cchhccccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCC
Q 017047          243 SNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRV  320 (378)
Q Consensus       243 ~sL~~~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnL  320 (378)
                      ..|.......+.++.+|.|..||..+. +...++.|+|.+|+|..+|.. +..++.|+.|+++.|.|... ..|..|.+|
T Consensus        47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l  125 (177)
T KOG4579|consen   47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKL  125 (177)
T ss_pred             HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhH
Confidence            345555667778899999999998775 677899999999999999987 77779999999999999887 667779999


Q ss_pred             cEEeCCCCCCC
Q 017047          321 KVLDLSFNDFK  331 (378)
Q Consensus       321 q~LdLS~N~Ls  331 (378)
                      ..||..+|.+.
T Consensus       126 ~~Lds~~na~~  136 (177)
T KOG4579|consen  126 DMLDSPENARA  136 (177)
T ss_pred             HHhcCCCCccc
Confidence            99999999987

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.80  E-value=0.00022  Score=72.42  Aligned_cols=105  Identities=18%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             cccccccCCCceee--cC---cccccCCCcceEEecCCcCCccCccc-------------cCCCCCccEEEcCCCCCCCc
Q 017047          250 RAGTPQSKDSRFIV--LP---QVEIKAGDDVRLDLRGHRVRSLIASG-------------LNLQPNLEFVYLRDNMLSTL  311 (378)
Q Consensus       250 ~~~T~dlrdnrfs~--LP---~l~~KlssL~~LDLSgN~LssL~~s~-------------f~lL~nLe~LdLs~NkLs~L  311 (378)
                      +...+++.||-|..  ++   .++..+.+|++|.|.+|.|...-...             ....+.|+++....|++..-
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            55666777766653  11   12234566666666666554221110             12234455555555555322


Q ss_pred             ------ccCCCCCCCcEEeCCCCCCC--C-----CCCCCCCCCCeeeccccccccc
Q 017047          312 ------EGIEILTRVKVLDLSFNDFK--G-----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       312 ------~~f~~LtnLq~LdLS~N~Ls--~-----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                            ..|..++.|+.+.+.+|.|.  +     ..|.++++|+.|||.+|-|+..
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence                  23444444444455444444  1     2344444555555555544433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=5e-05  Score=75.71  Aligned_cols=78  Identities=23%  Similarity=0.174  Sum_probs=67.3

Q ss_pred             CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-C---CCCCCCCCCCeeeccc
Q 017047          273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-G---PGFEPLENCKALQFCS  348 (378)
Q Consensus       273 sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~---~~f~~L~nLk~LdLsn  348 (378)
                      +.+.|++.|+.|..|.  ....++.|++|.|+-|+|+.+..|..|++|+.|||..|.|. +   .-+.+|++|+.|.|..
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            4567999999999886  35667999999999999999999999999999999999999 3   3456788899999999


Q ss_pred             cccc
Q 017047          349 NCIL  352 (378)
Q Consensus       349 NrIs  352 (378)
                      |.-.
T Consensus        98 NPCc  101 (388)
T KOG2123|consen   98 NPCC  101 (388)
T ss_pred             CCcc
Confidence            8643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.00056  Score=71.31  Aligned_cols=86  Identities=20%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             CCCcceEEecCCcCCccCccc-cCCCCCccEEEcCCCCCCCc--ccC------CCCCCCcEEeCCCCCCCC----CCCCC
Q 017047          271 AGDDVRLDLRGHRVRSLIASG-LNLQPNLEFVYLRDNMLSTL--EGI------EILTRVKVLDLSFNDFKG----PGFEP  337 (378)
Q Consensus       271 lssL~~LDLSgN~LssL~~s~-f~lL~nLe~LdLs~NkLs~L--~~f------~~LtnLq~LdLS~N~Ls~----~~f~~  337 (378)
                      +..|+.|||++|+|-..+... ...++.|..|.+..|.|..+  +..      ..+..|++|++..|+|..    ..+..
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~  324 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT  324 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence            456899999999998877432 35578999999999999888  333      467899999999999962    56666


Q ss_pred             CCCCCeeeccccccccccc
Q 017047          338 LENCKALQFCSNCILLETK  356 (378)
Q Consensus       338 L~nLk~LdLsnNrIs~i~~  356 (378)
                      +.+|+.|.+..|.|+....
T Consensus       325 l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNKETD  343 (505)
T ss_pred             cchhhhhhccccccccccc
Confidence            7788888989999875443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.67  E-value=0.00055  Score=76.55  Aligned_cols=79  Identities=20%  Similarity=0.211  Sum_probs=49.7

Q ss_pred             CCCcceEEecCCc-CCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCeee
Q 017047          271 AGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKALQ  345 (378)
Q Consensus       271 lssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~Ld  345 (378)
                      +..|+.|||++|. +..+|. .+..+-+|++|+|++..|..+ .+|.+|..|.+|||.++...  . ..+..|.+|++|.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            4457777777654 344543 345556777777777777777 66777777777777766543  2 2333466777776


Q ss_pred             ccccc
Q 017047          346 FCSNC  350 (378)
Q Consensus       346 LsnNr  350 (378)
                      +..-.
T Consensus       649 l~~s~  653 (889)
T KOG4658|consen  649 LPRSA  653 (889)
T ss_pred             eeccc
Confidence            65544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.57  E-value=0.0011  Score=67.43  Aligned_cols=87  Identities=21%  Similarity=0.193  Sum_probs=44.1

Q ss_pred             CCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCC--c----ccCCCCCCCcEEeCCCCCCCC-------CC
Q 017047          272 GDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLST--L----EGIEILTRVKVLDLSFNDFKG-------PG  334 (378)
Q Consensus       272 ssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~--L----~~f~~LtnLq~LdLS~N~Ls~-------~~  334 (378)
                      ..|+.++...|++..-...    .|+.++.|+.+-+..|.|..  +    .+|..|++|++|||.+|-|+.       ..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            3455556666655532211    23444555555555555532  1    445555556666666665551       34


Q ss_pred             CCCCCCCCeeeccccccccccccc
Q 017047          335 FEPLENCKALQFCSNCILLETKLH  358 (378)
Q Consensus       335 f~~L~nLk~LdLsnNrIs~i~~L~  358 (378)
                      +..|++|++|++.++.|....-+.
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             hcccchheeecccccccccccHHH
Confidence            455555555555555555433333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.44  E-value=0.0011  Score=74.35  Aligned_cols=93  Identities=19%  Similarity=0.168  Sum_probs=75.0

Q ss_pred             CCCceeecCcccccCCCcceEEecCCc--CCccCccccCCCCCccEEEcCCCC-CCCc-ccCCCCCCCcEEeCCCCCCC-
Q 017047          257 KDSRFIVLPQVEIKAGDDVRLDLRGHR--VRSLIASGLNLQPNLEFVYLRDNM-LSTL-EGIEILTRVKVLDLSFNDFK-  331 (378)
Q Consensus       257 rdnrfs~LP~l~~KlssL~~LDLSgN~--LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L-~~f~~LtnLq~LdLS~N~Ls-  331 (378)
                      .+|.+..++... ++.+|+.|-+.+|.  +..+...+|..++.|++|||++|. +..+ ..++.|.+|++|+|++..|. 
T Consensus       531 ~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~  609 (889)
T KOG4658|consen  531 MNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH  609 (889)
T ss_pred             eccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc
Confidence            344555555433 34479999999997  778887778889999999999874 5666 67889999999999999999 


Q ss_pred             C-CCCCCCCCCCeeeccccc
Q 017047          332 G-PGFEPLENCKALQFCSNC  350 (378)
Q Consensus       332 ~-~~f~~L~nLk~LdLsnNr  350 (378)
                      + .+|.+|..|.+|++..+.
T Consensus       610 LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  610 LPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             cchHHHHHHhhheecccccc
Confidence            3 788999999999998765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.21  E-value=0.014  Score=48.06  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=21.9

Q ss_pred             CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047          273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       273 sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N  328 (378)
                      .|+.|++.++ +..+....|..+..|+.+.+.+ .+..+  ..|..+.+|+.+++..|
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            4455555443 4444444444444455555533 33333  33444555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.0014  Score=66.08  Aligned_cols=83  Identities=23%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             cCCCcceEEecCCcCCccCcc--ccCCCCCccEEEcCCCCCCCc-ccC-CCCCCCcEEeCCCCCCCC----CCCCCCCCC
Q 017047          270 KAGDDVRLDLRGHRVRSLIAS--GLNLQPNLEFVYLRDNMLSTL-EGI-EILTRVKVLDLSFNDFKG----PGFEPLENC  341 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~s--~f~lL~nLe~LdLs~NkLs~L-~~f-~~LtnLq~LdLS~N~Ls~----~~f~~L~nL  341 (378)
                      ++++++.|||.+|.|.....-  .+.+++.|++|+|+.|.|... ..+ ..+.+|++|-|.+-.|.-    ..+..|+.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            567888999999999865432  345679999999999998765 444 467889999998888772    445666677


Q ss_pred             Ceeeccccccc
Q 017047          342 KALQFCSNCIL  352 (378)
Q Consensus       342 k~LdLsnNrIs  352 (378)
                      ++|+++.|.+.
T Consensus       149 telHmS~N~~r  159 (418)
T KOG2982|consen  149 TELHMSDNSLR  159 (418)
T ss_pred             hhhhhccchhh
Confidence            77777777544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.0032  Score=63.68  Aligned_cols=123  Identities=19%  Similarity=0.059  Sum_probs=79.5

Q ss_pred             cccccCCCceeecCccc---ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeC
Q 017047          252 GTPQSKDSRFIVLPQVE---IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDL  325 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l~---~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdL  325 (378)
                      .-+|+.+|.|..-.+..   ..++.|+.|+|++|.|.......-..+.+|+.|-|.+..|..-   ..+..++.++.|++
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm  153 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM  153 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence            44677788776544432   3678899999999999876543312358899999988887543   55688899999999


Q ss_pred             CCCCCC---C--CCCCCCC-CCCeeecccccccccc-----------------------ccchhhccCCCCchhHhhh
Q 017047          326 SFNDFK---G--PGFEPLE-NCKALQFCSNCILLET-----------------------KLHLLEASQSFPIWSFSLL  374 (378)
Q Consensus       326 S~N~Ls---~--~~f~~L~-nLk~LdLsnNrIs~i~-----------------------~L~lL~~l~~FPiws~~~L  374 (378)
                      +.|.+.   .  .+...+. .+..|++..|.+..|.                       .+.-+.....||.|.+..|
T Consensus       154 S~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL  231 (418)
T KOG2982|consen  154 SDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL  231 (418)
T ss_pred             ccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence            999554   2  3333333 4455555554433221                       1123345568999987655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.69  E-value=0.0075  Score=66.10  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCCC---------CCCCC
Q 017047          270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFKG---------PGFEP  337 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls~---------~~f~~  337 (378)
                      .+.+|..||+++-+|+.+.  ++..+.+|+.|.+++=.|..-   ..+.+|++|++||+|......         .....
T Consensus       171 sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             ccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            3455777888888888773  567778888888877666542   567788888888888665441         34455


Q ss_pred             CCCCCeeeccccccc
Q 017047          338 LENCKALQFCSNCIL  352 (378)
Q Consensus       338 L~nLk~LdLsnNrIs  352 (378)
                      |++|+.||.+++.+.
T Consensus       249 LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  249 LPELRFLDCSGTDIN  263 (699)
T ss_pred             CccccEEecCCcchh
Confidence            788888888877765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.16  E-value=0.074  Score=43.69  Aligned_cols=80  Identities=13%  Similarity=0.193  Sum_probs=55.1

Q ss_pred             cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--CCCCCCCCCCCeee
Q 017047          270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--GPGFEPLENCKALQ  345 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~~~f~~L~nLk~Ld  345 (378)
                      .+.+|+.+.+.. .+..|....|..+..|+.+.+.++ +..+  ..|..+..|+.+++.++...  ...|..+.+|+.++
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccc
Confidence            566899999984 799999999999889999999886 8877  67889989999999774433  26788899999999


Q ss_pred             ccccccc
Q 017047          346 FCSNCIL  352 (378)
Q Consensus       346 LsnNrIs  352 (378)
                      +..| +.
T Consensus        88 ~~~~-~~   93 (129)
T PF13306_consen   88 IPSN-IT   93 (129)
T ss_dssp             ETTT--B
T ss_pred             cCcc-cc
Confidence            9766 44

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.11  E-value=0.01  Score=65.09  Aligned_cols=85  Identities=18%  Similarity=0.160  Sum_probs=68.8

Q ss_pred             cCCCcceEEecCCcCCccC-ccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCCC----CCCCCCCCCCee
Q 017047          270 KAGDDVRLDLRGHRVRSLI-ASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG----PGFEPLENCKAL  344 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~-~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~nLk~L  344 (378)
                      .++.|+.|.+.|-.+..-. ...+..+++|..||+++..|+.+.++..|++|++|.+.+=.|.-    .++..|++|+.|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            4677899999887775443 11245679999999999999999999999999999999888872    577889999999


Q ss_pred             eccccccccc
Q 017047          345 QFCSNCILLE  354 (378)
Q Consensus       345 dLsnNrIs~i  354 (378)
                      |++..+....
T Consensus       226 DIS~~~~~~~  235 (699)
T KOG3665|consen  226 DISRDKNNDD  235 (699)
T ss_pred             eccccccccc
Confidence            9998776533

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.87  E-value=0.015  Score=58.37  Aligned_cols=118  Identities=21%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             chhccccccccccCCCceee-cCcc----cccCCCcceEEecCCcCCccCcccc-------------CCCCCccEEEcCC
Q 017047          244 NLSGQRRAGTPQSKDSRFIV-LPQV----EIKAGDDVRLDLRGHRVRSLIASGL-------------NLQPNLEFVYLRD  305 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~-LP~l----~~KlssL~~LDLSgN~LssL~~s~f-------------~lL~nLe~LdLs~  305 (378)
                      .|..-++.-+.++.||-|.. +|..    +.+.++|.+|.|.+|.+..+-..-+             ..-+.|+.++...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            34444556666777777765 3332    2356778888888888765543322             1236677888887


Q ss_pred             CCCCCc------ccCCCCCCCcEEeCCCCCCC--C------CCCCCCCCCCeeeccccccccccccchhh
Q 017047          306 NMLSTL------EGIEILTRVKVLDLSFNDFK--G------PGFEPLENCKALQFCSNCILLETKLHLLE  361 (378)
Q Consensus       306 NkLs~L------~~f~~LtnLq~LdLS~N~Ls--~------~~f~~L~nLk~LdLsnNrIs~i~~L~lL~  361 (378)
                      |+|..-      ..|..-.+|.++-+-+|-|.  +      .++..+++|+.|||.+|-|+......+..
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence            877543      22333357777777777776  2      34455677788888888777554433333

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.38  E-value=0.058  Score=56.33  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCC-CCCCc
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDN-MLSTL  311 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~N-kLs~L  311 (378)
                      ++...+++.+|.+..+|..   +.+|+.|++.+ ++|..++.. +  ..+|+.|+|.+| .|..+
T Consensus        52 ~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         52 RASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             cCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccc
Confidence            5566677777777777732   34577777765 555555531 2  246777777766 44433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.05  E-value=0.0025  Score=62.60  Aligned_cols=102  Identities=16%  Similarity=0.046  Sum_probs=79.3

Q ss_pred             cccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSF  327 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~  327 (378)
                      -.-|+|+.-..+..+|-.++ .....+.|||+.|++-.+-.. |..+..|..|+|+.|+|..+ ..++.+..+..+++.+
T Consensus        19 v~~tc~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~   97 (326)
T KOG0473|consen   19 VDETCDLSLSELSEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK   97 (326)
T ss_pred             hhcccCCCHHHhcccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc
Confidence            34566666666777775443 455677899999998877653 55567788899999999888 7888888889999999


Q ss_pred             CCCCC--CCCCCCCCCCeeeccccccc
Q 017047          328 NDFKG--PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       328 N~Ls~--~~f~~L~nLk~LdLsnNrIs  352 (378)
                      |.++.  ..++.+.+++++++-.|.|.
T Consensus        98 n~~~~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   98 NNHSQQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cchhhCCccccccCCcchhhhccCcch
Confidence            98883  67888889999998888765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.46  E-value=0.072  Score=33.02  Aligned_cols=17  Identities=35%  Similarity=0.397  Sum_probs=12.3

Q ss_pred             cceEEecCCcCCccCcc
Q 017047          274 DVRLDLRGHRVRSLIAS  290 (378)
Q Consensus       274 L~~LDLSgN~LssL~~s  290 (378)
                      |++|||++|+|+.+++.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            67777777777776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.80  E-value=0.33  Score=50.79  Aligned_cols=57  Identities=23%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             cCCCcceEEecCCcCCccCccccCCCCCccEEEcCC-CCCCCcccCCCCCCCcEEeCCCC-CCC
Q 017047          270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRD-NMLSTLEGIEILTRVKVLDLSFN-DFK  331 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~-NkLs~L~~f~~LtnLq~LdLS~N-~Ls  331 (378)
                      .+.++..|++++|.|..++.    ...+|+.|.+.+ +.|..+++.. ..+|+.|+|++| +|.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS  108 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc
Confidence            35679999999999999982    345799999987 5565554321 358889999887 544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.72  E-value=0.1  Score=32.35  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=9.0

Q ss_pred             CccEEEcCCCCCCCc
Q 017047          297 NLEFVYLRDNMLSTL  311 (378)
Q Consensus       297 nLe~LdLs~NkLs~L  311 (378)
                      +|++|||++|+|+.+
T Consensus         1 ~L~~Ldls~n~l~~i   15 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSI   15 (22)
T ss_dssp             TESEEEETSSEESEE
T ss_pred             CccEEECCCCcCEeC
Confidence            356666666666655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.74  E-value=0.3  Score=30.86  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=13.0

Q ss_pred             CCcceEEecCCcCCccCcccc
Q 017047          272 GDDVRLDLRGHRVRSLIASGL  292 (378)
Q Consensus       272 ssL~~LDLSgN~LssL~~s~f  292 (378)
                      .+|+.|+|.+|+|+.++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            346666666666666665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.74  E-value=0.3  Score=30.86  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=13.0

Q ss_pred             CCcceEEecCCcCCccCcccc
Q 017047          272 GDDVRLDLRGHRVRSLIASGL  292 (378)
Q Consensus       272 ssL~~LDLSgN~LssL~~s~f  292 (378)
                      .+|+.|+|.+|+|+.++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            346666666666666665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.16  E-value=0.39  Score=48.59  Aligned_cols=90  Identities=20%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             ecCcccccCCCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCCc--c----c---------CCCCCCCcEE
Q 017047          263 VLPQVEIKAGDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLSTL--E----G---------IEILTRVKVL  323 (378)
Q Consensus       263 ~LP~l~~KlssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~L--~----~---------f~~LtnLq~L  323 (378)
                      .+-+...+|..|+..||+.|.|..-.+.    .+.....|.+|+|.+|.+.-+  .    +         ...-+.|+++
T Consensus        83 ~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v  162 (388)
T COG5238          83 MLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV  162 (388)
T ss_pred             HHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence            3444557899999999999999753332    234457899999999998655  1    1         2345689999


Q ss_pred             eCCCCCCC-C------CCCCCCCCCCeeeccccccc
Q 017047          324 DLSFNDFK-G------PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       324 dLS~N~Ls-~------~~f~~L~nLk~LdLsnNrIs  352 (378)
                      +...|+|. +      ..|....+|+.+.+..|.|.
T Consensus       163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr  198 (388)
T COG5238         163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR  198 (388)
T ss_pred             EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence            99999998 4      23444468999999999986

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.10  E-value=0.36  Score=28.50  Aligned_cols=14  Identities=43%  Similarity=0.487  Sum_probs=5.9

Q ss_pred             cceEEecCCcCCcc
Q 017047          274 DVRLDLRGHRVRSL  287 (378)
Q Consensus       274 L~~LDLSgN~LssL  287 (378)
                      |+.|+|++|+|+.+
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            55555555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.34  E-value=0.03  Score=55.32  Aligned_cols=80  Identities=16%  Similarity=0.037  Sum_probs=65.1

Q ss_pred             ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCC
Q 017047          251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFND  329 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~  329 (378)
                      ...+|+..|++..+-..+..++.|.+|||+.|+|.-++.. +..+..+..+++++|.++.+ -.++.+++++++++-.|.
T Consensus        44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            4456666666666665555667788999999999988864 55557889999999999988 788999999999999999


Q ss_pred             CC
Q 017047          330 FK  331 (378)
Q Consensus       330 Ls  331 (378)
                      |.
T Consensus       123 ~~  124 (326)
T KOG0473|consen  123 FF  124 (326)
T ss_pred             ch
Confidence            88

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.54  E-value=0.8  Score=30.15  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=9.0

Q ss_pred             CCccEEEcCCCCCCCccc
Q 017047          296 PNLEFVYLRDNMLSTLEG  313 (378)
Q Consensus       296 ~nLe~LdLs~NkLs~L~~  313 (378)
                      .+|+.|+|++|+|..+++
T Consensus         2 ~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        2 TNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CccCEEECCCCccceecC
Confidence            345555555555544433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=84.40  E-value=0.65  Score=27.38  Aligned_cols=15  Identities=40%  Similarity=0.536  Sum_probs=6.9

Q ss_pred             CccEEEcCCCCCCCc
Q 017047          297 NLEFVYLRDNMLSTL  311 (378)
Q Consensus       297 nLe~LdLs~NkLs~L  311 (378)
                      +|++|+|++|+|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            466666666665543

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.19  E-value=1.1  Score=29.54  Aligned_cols=19  Identities=26%  Similarity=0.237  Sum_probs=10.1

Q ss_pred             CCCCeeecccccccccccc
Q 017047          339 ENCKALQFCSNCILLETKL  357 (378)
Q Consensus       339 ~nLk~LdLsnNrIs~i~~L  357 (378)
                      .+|+.|++.+|+|..++++
T Consensus         2 ~~L~~L~L~~NkI~~IEnL   20 (26)
T smart00365        2 TNLEELDLSQNKIKKIENL   20 (26)
T ss_pred             CccCEEECCCCccceecCc
Confidence            4555555555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 56/338 (16%), Positives = 104/338 (30%), Gaps = 96/338 (28%)

Query: 100 TTKQTITADSAVGKKTNTVLSEPVRRSLPE------------IRRSSLPSVVTKPTSTRA 147
           TT+     D      T  +  +    +L               R   LP           
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----------- 319

Query: 148 SVSQTRKSVP--ISPVGRSLS---------KSTGSDAKTETLKKASTKPALSVASSSRRV 196
              +   + P  +S +  S+          K    D  T  + ++S    L  A   +  
Sbjct: 320 --REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLN-VLEPAEYRKMF 375

Query: 197 SSMSLDSSGSNVSRKTISKV--SSPSVRSPSVSSGLRNGSLSSSLDRSSNLSGQRRAGTP 254
             +S+    +++    +S +           V + L   SL   +++             
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEK------------- 419

Query: 255 QSKDSRFIVLP--QVEIKAGDDVRLDLRGHRVRSLIAS--------GLNLQPNLEFVYLR 304
           Q K+S  I +P   +E+K   +    L  H  RS++            +L P     Y  
Sbjct: 420 QPKEST-ISIPSIYLELKVKLENEYAL--H--RSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 305 DNM---LSTLEGIE--ILTRVKVLDLSFNDFK---------GPG-----FEPLENCKALQ 345
            ++   L  +E  E   L R+  LD  F + K           G      + L+  K   
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-Y 533

Query: 346 FCSNCILLETKLH-----LLEASQSFPIWSFSLLLKIS 378
            C N    E  ++     L +  ++     ++ LL+I+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-PGF 335
           LDL  +R+R+ +   L     LE +   DN L  ++G+  L R++ L L  N  +     
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI 526

Query: 336 EPLENCKALQ 345
           +PL +C  L 
Sbjct: 527 QPLVSCPRLV 536

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 4/119 (3%)

Query: 235 LSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNL 294
                     +   R A     +    +    ++++  D   L L    +  L    L  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQ 461

Query: 295 QPNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQFCSNCI 351
              +  + L  N L  L   +  L  ++VL  S N  +   G   L   + L  C+N +
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRV---KVLDLSFN 328
           L    + + ++   G+   P L+ + L +N L     I+ L       +L+L  N
Sbjct: 491 LQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 277 LDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
           LDLRG+++  +    L       + +   DN +  L+G  +L R+K L ++ N     G 
Sbjct: 24  LDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 81

Query: 336 EPLENCKALQ 345
              +    L 
Sbjct: 82  GLDQALPDLT 91

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 289 ASGLNLQPNLEFVYLRDNMLSTLEGI-EILTRVKVLDLSFNDFKG-PGFEPLENCKALQF 346
           A+          + LR   +  +E +   L +   +D S N+ +   GF  L   K L  
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 71

Query: 347 CSNCI-----LLETKLHLLE 361
            +N I      L+  L  L 
Sbjct: 72  NNNRICRIGEGLDQALPDLT 91

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
            V L      +   + + L+     + + L  N +  +  +  +  +++L L  N  K  
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-- 83

Query: 334 GFEPLEN-CKALQ 345
             E L+     L+
Sbjct: 84  KIENLDAVADTLE 96

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 277 LDLRGHRVRSLIASGL-NLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN---DFKG 332
           L L  + ++ +    L  +   LE +++  N +++L GIE L  ++VL +S N   ++  
Sbjct: 75  LSLGRNLIKKI--ENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG- 131

Query: 333 PGFEPLENCKALQ 345
              + L     L+
Sbjct: 132 -EIDKLAALDKLE 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 277 LDLRGHRVRSL-IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
           L L   R     +    +    LEF+   +  L+++  +  L ++K L+LS N   G   
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 336 EPLENCKALQ 345
              E C  L 
Sbjct: 82  VLAEKCPNLT 91

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-P 333
           ++ +L+   V        N   +++ +   ++ + +++GI+ L  V  L L+ N      
Sbjct: 24  IKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 81

Query: 334 GFEPLENCKALQFCSNCI 351
               L+N   L    N I
Sbjct: 82  PLTNLKNLGWLFLDENKI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  + +  +  +GL   P LE +YL +N ++ +  +  LT++  L L  N        
Sbjct: 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--DIV 169

Query: 337 PLENCKALQ 345
           PL     LQ
Sbjct: 170 PLAGLTKLQ 178

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
            L L  +++  +    L     L+ +YL  N +S L  +  L  + VL+L   +      
Sbjct: 157 TLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214

Query: 336 EPLENCKALQFCSN 349
               N        N
Sbjct: 215 NHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L G+++  +    L    NL +++L +N +  L  ++ L ++K L L  N        
Sbjct: 70  LFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS--DIN 125

Query: 337 PLENCKALQ 345
            L +   L+
Sbjct: 126 GLVHLPQLE 134

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  ++++ L  S L     L+ + L  N +S + G+  L +++ L L  N        
Sbjct: 92  LFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT--DIT 147

Query: 337 PLENCKALQ 345
            L     L 
Sbjct: 148 VLSRLTKLD 156

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
            L L  +++  +  + L+    L+ + L DN +S +  +  LT+++ L LS N       
Sbjct: 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DL 190

Query: 336 EPLENCKALQ---FCSNCILLETKLHL 359
             L   K L      S   L +   H 
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPINHQ 217

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-P 333
           ++ +L+   V        N   +++ +   ++ + +++GI+ L  V  L L+ N      
Sbjct: 27  IKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 334 GFEPLENCKALQFCSNCI 351
               L+N   L    N +
Sbjct: 85  PLANLKNLGWLFLDENKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  + +  +  +GL   P LE +YL +N ++ +  +  LT++  L L  N        
Sbjct: 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--DIV 172

Query: 337 PLENCKALQ 345
           PL     LQ
Sbjct: 173 PLAGLTKLQ 181

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L G+++  +    L    NL +++L +N +  L  ++ L ++K L L  N        
Sbjct: 73  LFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS--DIN 128

Query: 337 PLENCKALQ 345
            L +   L+
Sbjct: 129 GLVHLPQLE 137

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  +++  +    L     L+ +YL  N +S L  +  L  + VL+L   +       
Sbjct: 161 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN 218

Query: 337 PLENCKALQ 345
              N     
Sbjct: 219 HQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  ++V+ L  S L     L+ + L  N +S + G+  L +++ L L  N        
Sbjct: 95  LFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT--DIT 150

Query: 337 PLENCKALQ 345
            L     L 
Sbjct: 151 VLSRLTKLD 159

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           + L    V  L  +G+    N++ + + +   +    I  L+ ++ L +   D       
Sbjct: 49  ITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP 106

Query: 337 PLENCKALQ 345
            L    +L 
Sbjct: 107 NLSGLTSLT 115

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPG 334
           +   L      ++  + +N   +L ++ L +  ++ L GIE    +K L ++        
Sbjct: 26  LNGLLGQSSTANITEAQMN---SLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--N 80

Query: 335 FEPLENCKALQ 345
           + P+     L+
Sbjct: 81  YNPISGLSNLE 91

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST--LEGIEILTRVKVLDLSFNDFKGPG 334
           L +      +   + ++   NLE + +    +++  +  +  LT + +LD+S +      
Sbjct: 71  LTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 335 FEPLENCKALQ 345
              +     + 
Sbjct: 129 LTKINTLPKVN 139

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-PG 334
            L   G  V ++   G+    NL  + L+DN ++ L  ++ LT++  L+LS N  K    
Sbjct: 45  TLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 335 FEPLENCKALQFCSNCI 351
              L++ K L   S  I
Sbjct: 103 IAGLQSIKTLDLTSTQI 119

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-P 333
           +++      V             +  +      ++T+EG++ L  +  L+L  N      
Sbjct: 22  IKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79

Query: 334 GFEPLENCKALQFCSNCI 351
             + L     L+   N +
Sbjct: 80  PLKNLTKITELELSGNPL 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  +++ ++  S L    NL+++ + +  +S L  +  L+++  L    N        
Sbjct: 134 LYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS--DIS 189

Query: 337 PLENCKALQ 345
           PL +   L 
Sbjct: 190 PLASLPNLI 198

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L+L G+ ++++  S +    +++ + L    ++ +  +  L+ ++VL L  N        
Sbjct: 90  LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT--NIS 145

Query: 337 PLENCKALQ 345
           PL     LQ
Sbjct: 146 PLAGLTNLQ 154

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
            LDL   ++  +  + L    NL+ +YL  N ++ +  +  LT ++ L +          
Sbjct: 111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS--DL 166

Query: 336 EPLENCKALQ 345
            PL N   L 
Sbjct: 167 TPLANLSKLT 176

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L +   +V  L  + L     L  +   DN +S +  +  L  +  + L  N        
Sbjct: 156 LSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS--DVS 211

Query: 337 PLENCKALQ 345
           PL N   L 
Sbjct: 212 PLANTSNLF 220

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 277 LDLRGHRVRSL-IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN---DFKG 332
           L L   +     I        NLEF+ L +  L ++  +  L ++K L+LS N       
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 333 PGFEPLENCKALQFCSNCI 351
              E L N   L    N +
Sbjct: 89  MLAEKLPNLTHLNLSGNKL 107

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
           +L + G +V S+   G+    NLE++ L  N ++ +  +  L ++  L +  N       
Sbjct: 48  KLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-- 103

Query: 336 EPLENCKALQ 345
             L+N   L+
Sbjct: 104 SALQNLTNLR 113

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 275 VRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
           +R  L+   V  ++    L    ++  + +    +++++GIE LT ++ L+L+ N     
Sbjct: 25  IRAVLQKASVTDVVTQEEL---ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-- 79

Query: 334 GFEPLENCKALQ 345
              PL N   L 
Sbjct: 80  DISPLSNLVKLT 91

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  +++  +     +L  +L +     N ++ +  +  +TR+  L +  N        
Sbjct: 182 LSLNYNQIEDISPLA-SL-TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT--DLS 237

Query: 337 PLENCKALQ 345
           PL N   L 
Sbjct: 238 PLANLSQLT 246

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L +  +++  L     NL   L ++ +  N +S +  ++ LT++K+L++  N        
Sbjct: 226 LKIGNNKITDLSPLA-NL-SQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS--DIS 281

Query: 337 PLENCKALQ 345
            L N   L 
Sbjct: 282 VLNNLSQLN 290

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG--P 333
            L +  +++  + A   NL  NL  +YL ++ +S +  +  LT++  L+L  N       
Sbjct: 92  NLYIGTNKITDISALQ-NL-TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 334 GFEPLENCKALQFCSNCI 351
               +     L    + +
Sbjct: 150 PLSNMTGLNYLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L+L  +   S ++   N+   L ++ + ++ +  +  I  LT +  L L++N  +     
Sbjct: 137 LNLGANHNLSDLSPLSNM-TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE--DIS 193

Query: 337 PLENCKALQ 345
           PL +  +L 
Sbjct: 194 PLASLTSLH 202

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 8/52 (15%), Positives = 23/52 (44%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN 328
           L L  +++ +     +    NL  ++L  N ++ +  +  L+++   D +  
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 276 RLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPG 334
            L +   +V+ +   + L    +L  + L  N +  +  +  LT +       N      
Sbjct: 159 YLTVTESKVKDVTPIANL---TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT--D 213

Query: 335 FEPLENCKALQ 345
             P+ N   L 
Sbjct: 214 ITPVANMTRLN 224

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 8/70 (11%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
                 +++  +     N+   L  + + +N ++ L  +  L+++  L++  N       
Sbjct: 203 YFTAYVNQITDITPVA-NM-TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-- 258

Query: 336 EPLENCKALQ 345
             +++   L+
Sbjct: 259 NAVKDLTKLK 268

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
            L++  +++  +  + +     L+ + +  N +S +  +  L+++  L L+ N       
Sbjct: 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 336 EPLENCKALQ 345
           E +     L 
Sbjct: 305 EVIGGLTNLT 314

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
            L      ++S+   G+    NL  +   +N L+ +  ++ LT++  + ++ N       
Sbjct: 50  TLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA--DI 105

Query: 336 EPLENCKALQ 345
            PL N   L 
Sbjct: 106 TPLANLTNLT 115

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           + +  +++  +     NL  NL  + L +N ++ ++ ++ LT +  L+LS N        
Sbjct: 95  ILMNNNQIADITPLA-NL-TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--S 150

Query: 337 PLENCKALQ--FCSNCIL 352
            L    +LQ     N + 
Sbjct: 151 ALSGLTSLQQLSFGNQVT 168

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L G++++ +    L    NL  + L +N +S L  +  LT++  L L  N        
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS--NIS 281

Query: 337 PLENCKALQ 345
           PL    AL 
Sbjct: 282 PLAGLTALT 290

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 275 VRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
           ++  L    V   ++ + L     +  +      + +++G+E L  +  ++ S N     
Sbjct: 27  MKTVLGKTNVTDTVSQTDL---DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-- 81

Query: 334 GFEPLENCKALQ 345
              PL+N   L 
Sbjct: 82  DITPLKNLTKLV 93

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  + +  +  S ++    L+ ++  +N +S +  +  LT +  L    N        
Sbjct: 314 LTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS--DLT 369

Query: 337 PLENCKALQ 345
           PL N   + 
Sbjct: 370 PLANLTRIT 378

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           ++   +++  +  + L     L  + + +N ++ +  +  LT +  L L  N       +
Sbjct: 73  INFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--D 128

Query: 337 PLENCKALQ 345
           PL+N   L 
Sbjct: 129 PLKNLTNLN 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  +++ ++  S L     L  + L +N L  +  I  L  +  L L FN+       
Sbjct: 270 LKLGANQISNI--SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS--DIS 325

Query: 337 PLENCKALQ 345
           P+ +   LQ
Sbjct: 326 PVSSLTKLQ 334

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
           RLD+  ++V  +  S L    NLE +   +N +S +  + ILT +  L L+ N  K    
Sbjct: 181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-- 236

Query: 336 EPLENCKALQ 345
             L +   L 
Sbjct: 237 GTLASLTNLT 246

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L+L  +++  +  S ++   NL ++ L  N +S +  +  LT+++ L    N        
Sbjct: 292 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--S 347

Query: 337 PLENCKALQ 345
            L N   + 
Sbjct: 348 SLANLTNIN 356

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           LDL  +++ +L    L+    L  + L  N +S +  +  LT +  L+L+ N  +     
Sbjct: 248 LDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE--DIS 303

Query: 337 PLENCKALQ 345
           P+ N K L 
Sbjct: 304 PISNLKNLT 312

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-PG 334
            L    +++  +  + L +  NL+ + L  N L  +  +  LT +  LDL+ N       
Sbjct: 203 SLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260

Query: 335 FEPLENCKALQFCSNCI 351
              L     L+  +N I
Sbjct: 261 LSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 296 PNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
             LE + +  N +S +  +  LT ++ L  + N        PL     L 
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS--DITPLGILTNLD 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPG 334
           V+ +L    V  L          ++     ++ + +L G++  T +K L LS N      
Sbjct: 22  VKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS--D 77

Query: 335 FEPLENCKALQ 345
             PL++   L+
Sbjct: 78  LSPLKDLTKLE 88

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
             +     ++SL  +G+    NL+ ++L  N +S L  ++ LT+++ L ++ N  K    
Sbjct: 45  NFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK--NL 100

Query: 336 EPLENC--KALQFCSNCI 351
             + +     L   +N +
Sbjct: 101 NGIPSACLSRLFLDNNEL 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQFCS 348
                  N     L    ++ L   + L+ V+  +   ++ +   G +   N K L    
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 349 NCI 351
           N I
Sbjct: 73  NQI 75

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
           RL L  + +R      L    NLE + +R+N L ++  +  L++++VLDL  N+      
Sbjct: 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT--NT 165

Query: 336 EPLENCKALQ---FCSNCILLETKLHLLE 361
             L   K +          + E   +  E
Sbjct: 166 GGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L +  +R+++L  +G+     L  ++L +N L   + +  L  +++L +  N  K     
Sbjct: 90  LSVNRNRLKNL--NGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK--SIV 144

Query: 337 PLENCKALQ 345
            L     L+
Sbjct: 145 MLGFLSKLE 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
            LDL G+ +  + A+ L     LE + L  N+L     +E L+ ++ LDL+ N  +    
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ--EL 95

Query: 336 EPLENCKALQFCSNCI 351
               + + L   +N I
Sbjct: 96  LVGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKG- 332
              +    ++  +AS      N++ + L  N LS +   ++   T++++L+LS N     
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET 73

Query: 333 PGFEPLENCKALQFCSNCI 351
              E L   + L   +N +
Sbjct: 74  LDLESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 276 RLDLRGHRVRSL-IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK--G 332
            LDL+ + + ++  A        LE + L+ N +  ++G  +  ++K LDLS N     G
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG 207

Query: 333 PGFEPLENCKALQFCSNCI 351
           P F+       +   +N +
Sbjct: 208 PEFQSAAGVTWISLRNNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
            LDL G+ +  + A+ L     LE + L  N+L     +E L+ ++ LDL+ N  +    
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ--EL 95

Query: 336 EPLENCKALQFCSNCI 351
               + + L   +N I
Sbjct: 96  LVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKG- 332
              +    ++  +AS      N++ + L  N LS +   ++   T++++L+LS N     
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET 73

Query: 333 PGFEPLENCKALQFCSNCI 351
              E L   + L   +N +
Sbjct: 74  LDLESLSTLRTLDLNNNYV 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG----------IEILTRVKVLDLS 326
           LDL  + + ++    L     LE + L+ N L+ L            ++ L+ + +L+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 327 FNDFKGPGFEPLENCKALQF 346
            N F     E  ++   L+ 
Sbjct: 545 SNGFDEIPVEVFKDLFELKI 564

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKGPG 334
           L+L+ + +  L         NL  ++L  N +  ++         +  LDLS N      
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 335 FEPLENCKALQF 346
                  + LQ 
Sbjct: 138 LGTQVQLENLQE 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKGP 333
            L L  + ++ +  +    Q NL  + L  N LS+ +      L  ++ L LS N  +  
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 334 GFEPLENCK 342
             E L+   
Sbjct: 161 KSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKGPG 334
           L+L  +++R L A+       L  + +  N +S LE      L  +KVL+L  N+     
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 335 FEPLENCKALQ 345
            +    C  L 
Sbjct: 90  DKTFAFCTNLT 100

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGI----EILTRVKVLDLSFNDFKG 332
           + L  ++   L  +   L P+L+ + LR   L  ++      + L  + +LDLS N+   
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 333 PGFEPLENCKALQ 345
              + LE  + L+
Sbjct: 495 INDDMLEGLEKLE 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFNDFKGPGF 335
           ++L+ H   ++ ++  +    L+ + L    LS L  G+  L+ +K L LS N F+    
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 336 EPLENCKALQF---CSNCILLE 354
               N  +L       N   LE
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKGPG 334
           L L  + +  +  + L+    L+ ++     +S+++ I +     ++ L L  N      
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 335 FEPLENCKALQ 345
                  + L+
Sbjct: 146 LPKGFPTEKLK 156

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKGP 333
            LDL   ++  +       Q  L+ + L  N L  +    +     +K L          
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 334 GFEPLENCKALQF 346
            F PL N K L+ 
Sbjct: 121 DFIPLHNQKTLES 133

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 261 FIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRV 320
           F  L  +++       L L  + + SL     +    L  + L  N L+ L   ++   +
Sbjct: 476 FEGLSHLQV-------LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528

Query: 321 KVLDLSFNDFKGPGFEPLENCKALQFCSNCIL 352
           ++LD+S N    P  +   +   L    N  +
Sbjct: 529 EILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGI--EILTRVKVLDLSFNDFK-- 331
            L+L  +++  +         NL+ + L  N+L  L       L +V  +DL  N     
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 332 GPG-FEPLENCKALQFCSNCILLETKLHLLEASQS 365
               F+ LE  + L    N +   T +H + +   
Sbjct: 354 QDQTFKFLEKLQTLDLRDNAL---TTIHFIPSIPD 385

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKGPG 334
           LDL   ++  +     +    L+ + +  N L  L       L  +  LD SFN  +   
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 335 FEPLENCKALQF 346
                  K+L F
Sbjct: 538 GILQHFPKSLAF 549

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 277 LDLRGHRVRSLIASG-LNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFNDFKGP 333
           L + G+  +    S       NL F+ L    L  +     + L R+++L++S N+    
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 334 GFEPLENCKALQ 345
                    +L 
Sbjct: 513 DSSHYNQLYSLS 524

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI---LTRVKVLDLSFNDFKG 332
            L     ++ SL +  +     L+ + +  N + + +       LT +  +DLS+N  + 
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 333 PGFEPLENCKALQFCSNCILLETKLHL 359
                      LQF      +   L +
Sbjct: 168 I------TVNDLQFLRENPQVNLSLDM 188

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 12/77 (15%), Positives = 22/77 (28%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
             L      S      +   N+  + L    +  LE +    + + L +     K     
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 337 PLENCKALQFCSNCILL 353
            L   K+L    N   +
Sbjct: 326 DLPFLKSLTLTMNKGSI 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKG-- 332
           L L G+ ++SL     +   +L+ +   +  L++LE   I  L  +K L+++ N  +   
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 333 --PGFEPLENCKALQFCSNCI 351
               F  L N + L   SN I
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKGP 333
            LDL  + +R L +      P L+ + L    + T+E      L+ +  L L+ N  +  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 334 GFEPLENCKALQ 345
                    +LQ
Sbjct: 92  ALGAFSGLSSLQ 103

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 277 LDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKGP 333
           L + G     + +        NL F+ L    L  L       L+ ++VL++S N+F   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 334 GFEPLENCKALQ 345
              P +   +LQ
Sbjct: 510 DTFPYKCLNSLQ 521

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFKGP 333
           L      + SL    +     L+ + +  N++ +    E    LT ++ LDLS N  +  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 334 GFEPLENCKALQF 346
               L     +  
Sbjct: 165 YCTDLRVLHQMPL 177

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFNDFKGP 333
           LDL   ++  L  +  N   +L+ + +  N   +L+    + L  ++VLD S N     
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 15/90 (16%)

Query: 277 LDLRGHRVRS-----LIASGLNLQPNLEFVYLRDNMLSTLEGIEIL-------TRVKVLD 324
           + +  + +R      L+  GL     L+ + L+DN   T  G   L         ++ L 
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPNLRELG 250

Query: 325 LSFNDFKGPGFEPLENCKALQFCSNCILLE 354
           L+       G   +    A     N  L  
Sbjct: 251 LNDCLLSARGAAAV--VDAFSKLENIGLQT 278

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI----LTRVKVLDLSFNDFK 331
           RL+L  ++++SL     +    L  + L  N LS            T +K LDLSFN   
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 332 G--PGFEPLENCKALQFCSN 349
                F  LE  + L F  +
Sbjct: 92  TMSSNFLGLEQLEHLDFQHS 111

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFK-- 331
            L L G+ ++SL     +   +L+ +   +  L++LE   I  L  +K L+++ N  +  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 332 --GPGFEPLENCKALQFCSN 349
                F  L N + L   SN
Sbjct: 140 KLPEYFSNLTNLEHLDLSSN 159

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           LD+  + + S     L L P L+ +Y+  N L TL    +   + V+ +S N  K     
Sbjct: 436 LDVSNNNLDSF---SLFL-PRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDG 491

Query: 337 PLENCKALQ 345
             +   +LQ
Sbjct: 492 IFDRLTSLQ 500

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.43
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.42
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.4
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.4
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.39
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.37
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.35
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.34
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.34
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.3
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.3
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.28
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.25
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.2
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.2
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.18
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.16
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.1
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.03
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.01
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.99
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.98
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.63
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.42
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.39
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	93.57

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=6e-14  Score=123.84  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=97.9

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF  327 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~  327 (378)
                      +...+++.+|+|..+|..+..+..|+.|||++|+|+.+++..|..+++|+.|+|++|+|..+  ..|..+++|++|+|++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            56678899999999998778899999999999999999988899999999999999999999  4699999999999999


Q ss_pred             CCCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047          328 NDFKG---PGFEPLENCKALQFCSNCILLETKLH  358 (378)
Q Consensus       328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~  358 (378)
                      |+|+.   ..|..+.+|+.|++.+|.|.....+.
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          112 NDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            99993   46889999999999999998665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=1.2e-13  Score=123.81  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=93.4

Q ss_pred             hhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..+ |..+..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+  ..|..+.+|+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            44445667788888888887 55556788899999999999998888788888999999999999888  5788899999


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccccccch
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKLHL  359 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~l  359 (378)
                      +|+|++|+|+.   ..|..+.+|+.|++.+|.|.....+.+
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~  172 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW  172 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence            99999999983   458888899999999999877655543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.2e-13  Score=119.41  Aligned_cols=101  Identities=19%  Similarity=0.184  Sum_probs=90.2

Q ss_pred             ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047          253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L  330 (378)
                      ++++.+|+|..+|..+  ...|++|+|++|+|+.+++..|..+++|++|+|++|+|..+  ..|..+.+|++|+|++|+|
T Consensus        13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            5678899999999755  37899999999999999988898899999999999999999  3578999999999999999


Q ss_pred             CC---CCCCCCCCCCeeecccccccccc
Q 017047          331 KG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       331 s~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +.   ..|..|.+|+.|+|.+|.|....
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            94   45889999999999999998654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.49  E-value=9.9e-14  Score=121.60  Aligned_cols=108  Identities=17%  Similarity=0.183  Sum_probs=95.9

Q ss_pred             cccccccCCCceeecCcc--cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          250 RAGTPQSKDSRFIVLPQV--EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l--~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      +...+++.+|+|..++..  +..+.+|++|+|++|+|+++.+..|..+++|++|+|++|+|.++  ..|..+++|++|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            566788899999998864  56889999999999999999888898899999999999999998  45899999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCeeecccccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      ++|+|+.   ..|..+.+|+.|++.+|.|.....+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9999993   6788999999999999999866544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=123.05  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             hhccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..++. .+..+..|++|+|++|+|..+++..|..+++|++|+|++|+|.++  ..|..+.+|+
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence            3445567778888888888876 345788899999999999998888788889999999999999888  5688899999


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeecccccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      +|+|++|+|+.   ..|..+.+|+.|++.+|.|.+...+
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999999983   5788888999999999998866554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=1.8e-13  Score=119.14  Aligned_cols=102  Identities=23%  Similarity=0.282  Sum_probs=90.5

Q ss_pred             cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeCCCCC
Q 017047          252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDLSFND  329 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdLS~N~  329 (378)
                      ..+++.+|+|..+|..+.  .+|++|+|++|+|..+++..|..+++|++|+|++|+|.++ + .|..+.+|++|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            457788999999998654  7899999999999999988898899999999999999999 3 47899999999999999


Q ss_pred             CCC---CCCCCCCCCCeeecccccccccc
Q 017047          330 FKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       330 Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |+.   ..|..|.+|+.|+|.+|.|....
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            994   34899999999999999998654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=3.3e-13  Score=120.89  Aligned_cols=107  Identities=19%  Similarity=0.187  Sum_probs=94.6

Q ss_pred             ccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|+|..+|.. +..+.+|+.|+|++|+|..+.+..|..+++|++|+|++|+|..+  ..|..+.+|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            3456778899999998874 44688999999999999999888899999999999999999999  34789999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      ++|+|+.   ..|..+.+|+.|+|.+|+|..+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            9999994   67899999999999999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.44  E-value=3.7e-13  Score=132.71  Aligned_cols=110  Identities=18%  Similarity=0.125  Sum_probs=60.5

Q ss_pred             hhccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..+|+. +..+.+|++|+|++|+|+.+++..|..+.+|++|+|++|+|.++  ..|.+|++|+
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~  151 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  151 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence            33444455555555555555443 23455566666666666665555555555666666666666555  2355566666


Q ss_pred             EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|+|+.    ..+..|.+|+.|++.+|+|..+
T Consensus       152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             eeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            66666665541    2344555566666666655543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.43  E-value=9.3e-13  Score=118.90  Aligned_cols=110  Identities=20%  Similarity=0.257  Sum_probs=86.7

Q ss_pred             hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|..+  ..|..+++|+
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            334456677788888888877654 3677888888888888888877777778888888888888888  3578888888


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|+|+.   ..|..+.+|+.|++.+|.|...
T Consensus       159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            88888888883   4677888888888888888754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.43  E-value=6.2e-13  Score=119.55  Aligned_cols=111  Identities=21%  Similarity=0.171  Sum_probs=93.9

Q ss_pred             hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKV  322 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~  322 (378)
                      |....+...+++.+|+|..+|... ..+.+|+.|+|++|+|+.+++..|..+++|++|+|++|+|..+ ..+..+.+|++
T Consensus        60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  139 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH  139 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSE
T ss_pred             hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCE
Confidence            344556777888899998888655 4788899999999999999888788889999999999999988 78889999999


Q ss_pred             EeCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |+|++|+|+.   ..|..+.+|+.|++.+|.|.+..
T Consensus       140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9999999993   45888899999999999987553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.42  E-value=1e-12  Score=112.50  Aligned_cols=106  Identities=23%  Similarity=0.268  Sum_probs=92.7

Q ss_pred             cccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          250 RAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      +...+++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|.++  ..|..+.+|++|+|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            5567788899999888765 4788999999999999999988888889999999999999998  347899999999999


Q ss_pred             CCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          327 FNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +|+|+.   ..|..+.+|+.|++.+|.|....
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            999994   44688999999999999998653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=9.2e-13  Score=118.00  Aligned_cols=104  Identities=16%  Similarity=0.200  Sum_probs=93.0

Q ss_pred             cccccCCCceeecCcc--cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047          252 GTPQSKDSRFIVLPQV--EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF  327 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l--~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~  327 (378)
                      ..+++.+|+|..++..  +..+..|+.|+|++|+|+.+++..|..+++|++|+|++|+|.++  ..|..+.+|++|+|++
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  114 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS  114 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence            4678899999998542  45789999999999999999988899999999999999999998  4589999999999999


Q ss_pred             CCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          328 NDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |+|+.   ..|..+.+|+.|+|.+|+|..+.
T Consensus       115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A          115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             SCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             CcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence            99994   67899999999999999998763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.41  E-value=1.1e-12  Score=118.36  Aligned_cols=111  Identities=21%  Similarity=0.234  Sum_probs=95.5

Q ss_pred             hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..++... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|..+  ..|..+.+|+
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  134 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK  134 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence            444566777888999998887754 4788999999999999999988888889999999999999998  3478999999


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +|+|++|+|+.   ..|..+.+|+.|++.+|+|..+.
T Consensus       135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            99999999994   36889999999999999998654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=8.1e-13  Score=118.79  Aligned_cols=107  Identities=20%  Similarity=0.129  Sum_probs=92.8

Q ss_pred             ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|+|..++. .+..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+  ..|..+.+|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            455678888999988854 455788999999999999999988888889999999999999998  34789999999999


Q ss_pred             CCCCCC-C-CCCCCCCCCCeeecccccccccc
Q 017047          326 SFNDFK-G-PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       326 S~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      ++|+|+ . ..+..+.+|+.|++.+|+|..+.
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence            999999 3 67788999999999999998664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=6.5e-13  Score=124.54  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=89.8

Q ss_pred             ccccCCC-ceeecCcccccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047          253 TPQSKDS-RFIVLPQVEIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       253 T~dlrdn-rfs~LP~l~~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N  328 (378)
                      .+++.++ +|..+|. +..+.+|+.|+|++ |+|..+++..|..+.+|+.|+|++|+|.++  ..|..|.+|+.|||++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4466776 8999999 77888999999996 999999988899999999999999999998  46899999999999999


Q ss_pred             CCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047          329 DFKG---PGFEPLENCKALQFCSNCILLETKLH  358 (378)
Q Consensus       329 ~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~  358 (378)
                      +|+.   ..|..+. |+.|+|.+|.|.....+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~  122 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALR  122 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence            9994   3455554 999999999998765543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.40  E-value=1.4e-12  Score=113.99  Aligned_cols=110  Identities=20%  Similarity=0.152  Sum_probs=89.0

Q ss_pred             hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..+|... ..+..|++|+|++|+|..+++..|..+++|++|+|++|+|..+  ..|..+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  127 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK  127 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence            344556777888888888888755 4678899999999999988877777788899999999999888  3478889999


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|+|+.   ..|..+.+|+.|++.+|.+...
T Consensus       128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             EEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            99999999883   4478888999999999988754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.40  E-value=1.6e-12  Score=113.63  Aligned_cols=106  Identities=23%  Similarity=0.263  Sum_probs=89.1

Q ss_pred             cccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          250 RAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      +...+++.+|+|..+|... ..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+  ..|..+.+|++|+|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            4556778888888888754 4788899999999999999887788889999999999999988  347899999999999


Q ss_pred             CCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          327 FNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +|+|+.   ..|..+.+|+.|++.+|+|..+.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            999983   44788999999999999987553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.39  E-value=1.4e-12  Score=121.68  Aligned_cols=102  Identities=25%  Similarity=0.254  Sum_probs=52.9

Q ss_pred             ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047          251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N  328 (378)
                      ...+++.+|+|..+|.....+..|++|+|++|+|+.+++..|..+++|++|+|++|+|..+  ..|..+++|+.|+|++|
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            3444455555555555444455555555555555555554455555555555555555555  22445555555555555


Q ss_pred             CCCC---CCCCCCCCCCeeeccccccc
Q 017047          329 DFKG---PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       329 ~Ls~---~~f~~L~nLk~LdLsnNrIs  352 (378)
                      +|+.   ..|..+.+|+.|++.+|+|.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            5552   23444555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=5.3e-13  Score=110.95  Aligned_cols=106  Identities=22%  Similarity=0.109  Sum_probs=92.0

Q ss_pred             ccccccccCCCcee--ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC-c-ccCCCCCCCcEEe
Q 017047          249 RRAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-L-EGIEILTRVKVLD  324 (378)
Q Consensus       249 ~~~~T~dlrdnrfs--~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~-L-~~f~~LtnLq~Ld  324 (378)
                      .+...+++.+|++.  .+|.....+.+|++|+|++|.|..+  ..+..+++|++|+|++|.|.+ + ..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44566788889888  8898777899999999999999999  467788999999999999998 5 4556799999999


Q ss_pred             CCCCCCCC----CCCCCCCCCCeeeccccccccccc
Q 017047          325 LSFNDFKG----PGFEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       325 LS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      |++|+|+.    ..|..+.+|+.|++.+|.|+....
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999994    678899999999999999987643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=9.4e-13  Score=115.35  Aligned_cols=101  Identities=20%  Similarity=0.183  Sum_probs=89.5

Q ss_pred             cccccCCCceeecCcccccCCCcceEEecCCcCCccCcc-ccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047          252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIAS-GLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s-~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N  328 (378)
                      .++++.+|+|..+|..+.  ..|++|+|++|+|..+++. .|..+++|++|+|++|+|.++  ..|..+.+|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            457888999999998554  3899999999999999875 477789999999999999998  57999999999999999


Q ss_pred             CCCC---CCCCCCCCCCeeeccccccccc
Q 017047          329 DFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+.   ..|..+.+|+.|++.+|+|+..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence            9993   5589999999999999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.39  E-value=2.2e-12  Score=118.06  Aligned_cols=107  Identities=21%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             cccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047          248 QRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD  324 (378)
Q Consensus       248 ~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld  324 (378)
                      ..+...+++.+|+|..+|... ..+..|++|+|++|+|..+++..|..+++|+.|+|++|+|.++  ..|..+++|++|+
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            345555666666666666543 3556666777777777666665566666677777777766666  2356666777777


Q ss_pred             CCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          325 LSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       325 LS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |++|+|+.   ..|..+.+|+.|++.+|.|.+.
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            77777663   3356666777777777766543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.37  E-value=3e-12  Score=117.13  Aligned_cols=113  Identities=24%  Similarity=0.247  Sum_probs=93.9

Q ss_pred             cchhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCC
Q 017047          243 SNLSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTR  319 (378)
Q Consensus       243 ~sL~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~Ltn  319 (378)
                      ..+....+...+++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|.++  ..|..+++
T Consensus        79 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN  158 (272)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence            34556667778888999998888764 4788899999999999998887788889999999999999988  34788999


Q ss_pred             CcEEeCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          320 VKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       320 Lq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |++|+|++|+|+.   ..|..+.+|+.|++.+|+|..+.
T Consensus       159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            9999999999984   44788899999999999988654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=1.7e-12  Score=114.51  Aligned_cols=101  Identities=24%  Similarity=0.301  Sum_probs=88.9

Q ss_pred             cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC
Q 017047          252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND  329 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~  329 (378)
                      .++++.+++|..+|..+.  .+|+.|+|++|+|+.++ ..|..+++|+.|+|++|.|..+  ..|..+.+|++|+|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            356788899999997543  57999999999999988 4677789999999999999999  469999999999999999


Q ss_pred             CCC---CCCCCCCCCCeeecccccccccc
Q 017047          330 FKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       330 Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |+.   ..|..|.+|+.|+|.+|+|..+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence            993   56999999999999999998654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.37  E-value=3.5e-12  Score=116.32  Aligned_cols=109  Identities=23%  Similarity=0.225  Sum_probs=85.3

Q ss_pred             ccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEE
Q 017047          247 GQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVL  323 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~L  323 (378)
                      ...+..++++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|.|..+  ..|..+++|++|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            3456667778888888877654 3677888888888888888877777778888888888888887  347888888888


Q ss_pred             eCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          324 DLSFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       324 dLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +|++|+|+.   ..|..+.+|+.|++.+|.|..+.
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            888888883   45778888888888888887553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.37  E-value=1.3e-12  Score=128.86  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=94.7

Q ss_pred             cccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      +...+|+.+|+|..+|.. +..+.+|++|||++|+|+.+++..|..+++|++|+|++|+|..+  ..|.+|.+|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            456789999999999865 45789999999999999999998899999999999999999998  468999999999999


Q ss_pred             CCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          327 FNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|+.   ..|+.|.+|+.|++.+|.|..+
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccC
Confidence            999994   4689999999999999999754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=1.6e-12  Score=119.60  Aligned_cols=104  Identities=21%  Similarity=0.253  Sum_probs=69.8

Q ss_pred             ccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCC
Q 017047          247 GQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLS  326 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS  326 (378)
                      ...+...+++.+|+|..+|....  ..|+.|+|++|+|..++  .+..+++|+.|+|++|+|+.++.+..+++|++|+|+
T Consensus        83 ~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLH  158 (263)
T ss_dssp             TCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECT
T ss_pred             cCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECC
Confidence            34445556666666666665433  56677777777777664  355667777777777777777667777777777777


Q ss_pred             CCCCCC-CCCCCCCCCCeeeccccccccc
Q 017047          327 FNDFKG-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|+. ..|..+.+|+.|++.+|.|...
T Consensus       159 ~N~i~~~~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          159 GNEITNTGGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence            777773 5666777777777777777644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.35  E-value=2.4e-12  Score=118.51  Aligned_cols=107  Identities=15%  Similarity=0.114  Sum_probs=81.3

Q ss_pred             chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEE
Q 017047          244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVL  323 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~L  323 (378)
                      .+....+...+++.+|+|..+|. +..+.+|+.|+|++|+|..++..  .. .+|+.|+|++|+|..++.|..+++|++|
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L  133 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEIL  133 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEE
T ss_pred             HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc--cc-CcccEEEccCCccCCChhhcCcccccEE
Confidence            34445566677777888887776 55677788888888888877643  23 6788888888888888778888888888


Q ss_pred             eCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|+|+ ...+..+.+|+.|++.+|+|..+
T Consensus       134 ~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             ECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred             ECCCCcCCCChHHccCCCCCEEECCCCcCcch
Confidence            88888888 36677788888888888888766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.35  E-value=1.9e-12  Score=123.51  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             cccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047          248 QRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD  324 (378)
Q Consensus       248 ~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld  324 (378)
                      ..+...+++.+|+|..++.. +..+..|++|||++|+|..+++..|..+++|++|+|++|+|..+  ..|..+.+|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            34455566666777666643 34566677777777777777666666667777777777777666  4566777777777


Q ss_pred             CCCCCCCC---CCC---CCCCCCCeeeccccccccc
Q 017047          325 LSFNDFKG---PGF---EPLENCKALQFCSNCILLE  354 (378)
Q Consensus       325 LS~N~Ls~---~~f---~~L~nLk~LdLsnNrIs~i  354 (378)
                      |++|+|+.   ..|   ..+.+|+.|+|.+|+|..+
T Consensus       143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            77777762   222   4566777777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.35  E-value=1e-12  Score=111.22  Aligned_cols=104  Identities=20%  Similarity=0.128  Sum_probs=73.8

Q ss_pred             cccccccCCCcee--ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC-cc-cCCCCCCCcEEeC
Q 017047          250 RAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-LE-GIEILTRVKVLDL  325 (378)
Q Consensus       250 ~~~T~dlrdnrfs--~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~-L~-~f~~LtnLq~LdL  325 (378)
                      +...+++.+|+|.  .+|..+..+.+|++|+|++|.|..+  ..|..+++|++|+|++|+|.. ++ .+..+++|++|+|
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            4455666777776  6777666677778888888887777  356666778888888888777 43 3345778888888


Q ss_pred             CCCCCCC----CCCCCCCCCCeeecccccccccc
Q 017047          326 SFNDFKG----PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       326 S~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      ++|+|+.    ..|..+.+|+.|++.+|.|....
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            8887773    45677777888888888776553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=5e-12  Score=108.13  Aligned_cols=101  Identities=20%  Similarity=0.262  Sum_probs=87.6

Q ss_pred             ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047          253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L  330 (378)
                      .+++.++++..+|...  ...|+.|+|++|+|..+++..|..+++|++|+|++|+|..+  ..|..+.+|++|+|++|+|
T Consensus        11 ~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            4566778888888643  36899999999999999988888889999999999999998  3478999999999999999


Q ss_pred             CC---CCCCCCCCCCeeecccccccccc
Q 017047          331 KG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       331 s~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +.   ..|..+.+|+.|++.+|+|..+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~  116 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVP  116 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeC
Confidence            94   45789999999999999998653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.34  E-value=2.7e-12  Score=119.48  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=86.4

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      +....+...+++.+|+|..+|. ...+..|++|+|++|+|..++  .+..+++|+.|+|++|+|..++.|..+++|++|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  162 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS  162 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEE
Confidence            4445566777788888888775 556788888888888888874  4666788888888888888888888888899999


Q ss_pred             CCCCCCCC-CCCCCCCCCCeeeccccccccccc
Q 017047          325 LSFNDFKG-PGFEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       325 LS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      |++|+|+. ..+..+.+|+.|++.+|.|+.+..
T Consensus       163 L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA  195 (291)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             ccCCccccchhhcCCCccCEEECCCCcCCCChh
Confidence            99998884 447888889999999998876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.34  E-value=7.5e-12  Score=114.13  Aligned_cols=108  Identities=22%  Similarity=0.188  Sum_probs=88.3

Q ss_pred             ccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEE
Q 017047          247 GQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVL  323 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~L  323 (378)
                      ...+...+++.+|+|..+|... ..+.+|++|+|++|+|..++...|..+++|+.|+|++|+|..+  ..|..+++|++|
T Consensus       107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  186 (270)
T 2o6q_A          107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL  186 (270)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence            4456677788888888887654 4678899999999999988887788788999999999999888  357888999999


Q ss_pred             eCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|+|+.   ..|..+.+|+.|++.+|.|...
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            999998883   4577888899999999988754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.34  E-value=1.8e-12  Score=113.29  Aligned_cols=108  Identities=16%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             ccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047          247 GQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD  324 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld  324 (378)
                      ...+...+++.+|.+..++ .+..+.+|++|+|++|+|.......|..+++|++|+|++|+|...  ..|..+++|++|+
T Consensus        64 ~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           64 YAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             GCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             cCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            3345556667777666655 345677788888888888875555677778888888888888763  6677888888888


Q ss_pred             CCCCC-CC-CCCCCCCCCCCeeecccccccccc
Q 017047          325 LSFND-FK-GPGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       325 LS~N~-Ls-~~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |++|. ++ ...|..+.+|+.|++.+|+|..+.
T Consensus       143 L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          143 LSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             CCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred             ccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence            88887 66 366777788888888888887654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=1.2e-12  Score=112.37  Aligned_cols=108  Identities=17%  Similarity=0.222  Sum_probs=80.7

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-cc-CCCCCCCcE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EG-IEILTRVKV  322 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~-f~~LtnLq~  322 (378)
                      +....+...+++.+|+|..+|.......+|++|||++|+|..+  ..|..+++|++|+|++|+|..+ +. |..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3344455667778888887765433344788888888888887  3577778888888888888887 34 478888888


Q ss_pred             EeCCCCCCCC--C--CCCCCCCCCeeeccccccccc
Q 017047          323 LDLSFNDFKG--P--GFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       323 LdLS~N~Ls~--~--~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+|++|+|+.  .  .|..+.+|+.|++.+|.|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc
Confidence            8888888873  2  577788888888888888754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.32  E-value=2.7e-12  Score=112.14  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=91.8

Q ss_pred             chhccccccccccCCCceee-cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCCcccCCCCCCCc
Q 017047          244 NLSGQRRAGTPQSKDSRFIV-LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLEGIEILTRVK  321 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~-LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L~~f~~LtnLq  321 (378)
                      .+....+...+++.+|+|.. .|..+..+.+|++|+|++|+|.......|..+++|++|+|++|. |..++.|..+++|+
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~  162 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK  162 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCC
T ss_pred             hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCC
Confidence            34445566777888888876 56666788999999999999998666678888999999999998 88888899999999


Q ss_pred             EEeCCCCCCCC-CCCCCCCCCCeeecccccccc
Q 017047          322 VLDLSFNDFKG-PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       322 ~LdLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      +|+|++|+|+. ..+..+.+|+.|++.+|+|..
T Consensus       163 ~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          163 SLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             EEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred             EEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence            99999999994 688899999999999999863

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=3.7e-12  Score=121.54  Aligned_cols=104  Identities=20%  Similarity=0.132  Sum_probs=89.4

Q ss_pred             ccccccCCCceeecCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          251 AGTPQSKDSRFIVLPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      ...+++.+|+|..++...+  .+.+|+.|+|++|+|..+++..|..+++|++|+|++|+|..+  ..|..+.+|++|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            4567888899998887654  688899999999999999888888889999999999999888  458899999999999


Q ss_pred             CCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          327 FNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|+.   ..|..|.+|+.|+|.+|+|..+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence            999983   6788899999999999998865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.31  E-value=6.3e-12  Score=117.70  Aligned_cols=109  Identities=16%  Similarity=0.149  Sum_probs=79.2

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      +....+...+++.+|+|..++ .+..+.+|++|+|++|+|..++.  +..+++|+.|+|++|+|..++.+..+++|++|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  157 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS  157 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred             HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEE
Confidence            344455666777777777766 34567777788888888777764  666777888888888887776677788888888


Q ss_pred             CCCCCCCC-CCCCCCCCCCeeeccccccccccc
Q 017047          325 LSFNDFKG-PGFEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       325 LS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      |++|+|+. ..|..+.+|+.|++.+|+|..+..
T Consensus       158 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccCCcCCCChhhcCCCCCCEEECCCCccCcChh
Confidence            88888873 447777888888888888776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.30  E-value=7.3e-12  Score=116.59  Aligned_cols=126  Identities=18%  Similarity=0.159  Sum_probs=97.1

Q ss_pred             cccccCCCCcccccccc---cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEE
Q 017047          226 VSSGLRNGSLSSSLDRS---SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVY  302 (378)
Q Consensus       226 ~s~~l~~~~l~~~l~rL---~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~Ld  302 (378)
                      +..+.+..+|...-+++   ..+....+...+++.+|+|..++. +..+.+|+.|+|++|+|..+.  .+..+++|+.|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~  162 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLS  162 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEE
T ss_pred             cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCEEEccCCcCCcch--hhccCCCCCEEE
Confidence            44444444444433333   334555667788889998888853 557888999999999999883  577778999999


Q ss_pred             cCCCCCCCcccCCCCCCCcEEeCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047          303 LRDNMLSTLEGIEILTRVKVLDLSFNDFK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       303 Ls~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |++|+|..+..+..+++|+.|+|++|.|+ ...+..+.+|+.|++.+|.|...
T Consensus       163 L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCC
Confidence            99999998855889999999999999998 46688889999999999988753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.30  E-value=1.5e-11  Score=114.62  Aligned_cols=110  Identities=22%  Similarity=0.155  Sum_probs=95.6

Q ss_pred             cccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047          248 QRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD  324 (378)
Q Consensus       248 ~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld  324 (378)
                      ..+...+++.+|+|..+|.. +..+.+|+.|+|++|+|..+++..|..+++|+.|+|++|+|..+  ..|..+++|++|+
T Consensus        99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence            34566788999999999854 45789999999999999999998888889999999999999999  3468899999999


Q ss_pred             CCCCCCC-C-CCCCCCCCCCeeecccccccccccc
Q 017047          325 LSFNDFK-G-PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       325 LS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      |++|+|+ . ..+..+.+|+.|++.+|.+.+...+
T Consensus       179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence            9999999 3 6677788999999999999865443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.29  E-value=1.4e-11  Score=112.36  Aligned_cols=101  Identities=21%  Similarity=0.246  Sum_probs=43.0

Q ss_pred             cccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047          252 GTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N  328 (378)
                      ..+++.+|+|..+|.. +..+.+|+.|+|++|+|..++...|..+++|+.|+|++|.|.++  ..|..+++|+.|+|++|
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            3334444444444432 12334444444444444444443344344444444444444443  33444444444444444


Q ss_pred             CCCC---CCCCCCCCCCeeeccccccc
Q 017047          329 DFKG---PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       329 ~Ls~---~~f~~L~nLk~LdLsnNrIs  352 (378)
                      +|+.   ..|..+.+|+.|++.+|.|.
T Consensus       212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          212 NLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCCcCCHHHcccCcccCEEeccCCCcc
Confidence            4442   12344444444444444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.29  E-value=1.3e-11  Score=112.64  Aligned_cols=110  Identities=20%  Similarity=0.199  Sum_probs=87.7

Q ss_pred             hhccccccccccCCCc-eeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCC
Q 017047          245 LSGQRRAGTPQSKDSR-FIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRV  320 (378)
Q Consensus       245 L~~~~~~~T~dlrdnr-fs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnL  320 (378)
                      |....+...+++.+|+ +..+ |..+..+.+|++|+|++|+|..+.+..|..+++|++|+|++|.|..+  ..|..+++|
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  155 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL  155 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc
Confidence            3444566777888886 7777 44455778899999999999888777788788899999999998888  347888999


Q ss_pred             cEEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          321 KVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       321 q~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ++|+|++|+|+.   ..|..+.+|+.|++.+|.|..+
T Consensus       156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            999999998883   4588888999999999988755

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.28  E-value=8.1e-12  Score=116.96  Aligned_cols=105  Identities=13%  Similarity=0.090  Sum_probs=65.0

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL  325 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL  325 (378)
                      ....+...+++.+|+|..++. ...+.+|+.|+|++|+|..+++  +..+++|+.|+|++|+|..+..+..+++|++|+|
T Consensus       126 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  202 (308)
T 1h6u_A          126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHL  202 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             cCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEc
Confidence            333445555566666666554 4455666666666666666554  5555666666666666666655666666666666


Q ss_pred             CCCCCCC-CCCCCCCCCCeeecccccccc
Q 017047          326 SFNDFKG-PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       326 S~N~Ls~-~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      ++|+|+. ..+..+.+|+.|++.+|.|+.
T Consensus       203 ~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          203 KNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             cCCccCccccccCCCCCCEEEccCCeeec
Confidence            6666662 445666666666766666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.28  E-value=1.7e-11  Score=111.29  Aligned_cols=110  Identities=18%  Similarity=0.125  Sum_probs=76.2

Q ss_pred             hhccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..++.. +..+.+|++|+|++|+|..+++..|..+++|++|+|.+|.|..+  ..|..+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            33445566667777777776653 34567777777777777777766666677777777777777776  2467777777


Q ss_pred             EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|+|+.    ..|..+.+|+.|++.+|+|..+
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            77777777762    3466677777777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.28  E-value=3.2e-12  Score=108.22  Aligned_cols=108  Identities=19%  Similarity=0.080  Sum_probs=91.6

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcE
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKV  322 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~  322 (378)
                      ....+...+++.+|+|..+ ..+..+..|++|+|++|+|....+..+..+++|++|+|++|.|..+   ..|..+++|++
T Consensus        46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred             HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence            3345566788888888888 5566788999999999999996555666679999999999999997   57889999999


Q ss_pred             EeCCCCCCCC--C----CCCCCCCCCeeeccccccccc
Q 017047          323 LDLSFNDFKG--P----GFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       323 LdLS~N~Ls~--~----~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+|++|.|+.  .    .|..+.+|+.|++.+|.+..+
T Consensus       125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            9999999994  3    588999999999999998755

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.28  E-value=1e-11  Score=120.80  Aligned_cols=113  Identities=12%  Similarity=0.174  Sum_probs=97.2

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV  322 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~  322 (378)
                      |....+...+++.+|+|..+|. ...+.+|+.|||++|+|..+.+..|..+++|+.|+|.+|+|..+  ..|..+++|+.
T Consensus       181 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE  259 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred             hhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence            4445667778889999999985 45788899999999999999888898899999999999999988  67899999999


Q ss_pred             EeCCCCCCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKLH  358 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~  358 (378)
                      |||++|+|+.   ..|..+.+|+.|+|.+|.|.+...+.
T Consensus       260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             EECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            9999999993   56788999999999999998665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.27  E-value=1.3e-11  Score=118.68  Aligned_cols=109  Identities=16%  Similarity=0.084  Sum_probs=83.8

Q ss_pred             ccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEE
Q 017047          247 GQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVL  323 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~L  323 (378)
                      ...+...+++.+|+|..++. .+..+..|++|+|++|+|..+.+..|..+++|++|+|++|+|..+  ..|..+++|++|
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  376 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL  376 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence            34456667777888877654 444677888888888888888777777778888888888888877  567888888888


Q ss_pred             eCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          324 DLSFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       324 dLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +|++|+|+.   ..|..+.+|+.|++.+|.|.+..
T Consensus       377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            888888883   45677888888888888887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.27  E-value=1.3e-11  Score=112.14  Aligned_cols=108  Identities=17%  Similarity=0.107  Sum_probs=66.9

Q ss_pred             ccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcE
Q 017047          247 GQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKV  322 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~  322 (378)
                      ...+...+++.+|+|..++. .+.++..|++|+|++|+|..+....|..+++|++|+|++|.|..+   ..|..+++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            34455566666666666653 334566677777777777766665566666777777777777652   45666677777


Q ss_pred             EeCCCCCCCC---CCCCCCCCCC----eeeccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPLENCK----ALQFCSNCILLE  354 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L~nLk----~LdLsnNrIs~i  354 (378)
                      |+|++|+|+.   ..|..+.+|+    .|++.+|.|..+
T Consensus       154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~  192 (276)
T 2z62_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (276)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred             EECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence            7777777662   3344444444    666777766543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.27  E-value=1e-11  Score=128.90  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=81.0

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      |....++..+++.+|+|..+| .+..+..|+.|+|++|+|..++  .+..|++|+.|+|++|.|..+..|..|.+|+.|+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~  159 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS  159 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEE
T ss_pred             hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCchhhcccCCCCEEE
Confidence            444555666777777777766 3456777888888888888764  3666678888888888888877778888888888


Q ss_pred             CCCCCCCC-CCCCCCCCCCeeeccccccccccc
Q 017047          325 LSFNDFKG-PGFEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       325 LS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      |++|+|.. ..|..|.+|+.|+|.+|+|..+..
T Consensus       160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~  192 (605)
T 1m9s_A          160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA  192 (605)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CcCCcCCCchhhccCCCCCEEECcCCCCCCChH
Confidence            88888883 347778888888888888876533

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=3.5e-12  Score=109.56  Aligned_cols=104  Identities=14%  Similarity=0.046  Sum_probs=90.6

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc---cCCCCCCCcEEeCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE---GIEILTRVKVLDLS  326 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~---~f~~LtnLq~LdLS  326 (378)
                      +...+++.+|+|..+ ..+..+..|++|+|++|+|..+++..|..+++|++|+|++|+|..++   .|..+++|+.|+|+
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            677788999999888 45567889999999999999998776677899999999999999883   68899999999999


Q ss_pred             CCCCC-CCC-----CCCCCCCCeeeccccccccc
Q 017047          327 FNDFK-GPG-----FEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls-~~~-----f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|.|. .+.     +..+.+|+.|++.+|.+...
T Consensus       122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             SSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            99998 333     78899999999999988643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.26  E-value=1.8e-11  Score=112.60  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=93.2

Q ss_pred             ccccccccccCCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047          247 GQRRAGTPQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV  322 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~  322 (378)
                      ...+...+++.+|+|..  +|..+..+.+|++|+|++|+|..+.+..|..+++|+.|+|++|.|..+  ..|..+++|++
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            34556677888888875  787777889999999999999999887888889999999999999988  46888999999


Q ss_pred             EeCCCCCCCC---CCCCCC-CCCCeeeccccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPL-ENCKALQFCSNCILLETK  356 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L-~nLk~LdLsnNrIs~i~~  356 (378)
                      |||++|+|+.   ..|..+ .+|+.|++.+|.|.....
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9999999983   567777 489999999999986543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.25  E-value=3.2e-11  Score=117.33  Aligned_cols=101  Identities=20%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             ccccccCCCceeecCccc-ccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047          251 AGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN  328 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N  328 (378)
                      ...+++.+|+|..+|... ..+.+|+.|+|++ |.+..++...|..+++|++|+|++|.|..++.+..+.+|++|+|++|
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence            333444444444444322 1333344444433 23333333333334444444444444444444444444444444444


Q ss_pred             CCCC---CCCCCCCCCCeeecccccc
Q 017047          329 DFKG---PGFEPLENCKALQFCSNCI  351 (378)
Q Consensus       329 ~Ls~---~~f~~L~nLk~LdLsnNrI  351 (378)
                      +|+.   ..|..+.+|+.|++.+|+|
T Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          218 HLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             ccCccChhhhccCccCCEEECCCCce
Confidence            4441   3333444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.24  E-value=8.4e-12  Score=131.48  Aligned_cols=109  Identities=18%  Similarity=0.071  Sum_probs=96.0

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL  323 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L  323 (378)
                      +....+...+++.+|+|..+|...+++..|+.|+|++|+|..|+. .|..+++|++|+|++|.|..+ ..|+.|.+|++|
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            444566778899999999999988899999999999999998875 467779999999999999988 789999999999


Q ss_pred             eCCCCCCC-C-CCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFK-G-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|.|+ + ..|+.|.+|+.|+|.+|.|...
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            99999999 4 5699999999999999999854

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=2.1e-11  Score=119.03  Aligned_cols=113  Identities=13%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV  322 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~  322 (378)
                      |....+...+++.+|+|..+|. ...+.+|+.|+|++|+|..+.+..|..+++|+.|+|.+|+|..+  ..|..+++|+.
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  270 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE  270 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence            4445567778888999998885 45688899999999999999888898899999999999999988  67899999999


Q ss_pred             EeCCCCCCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKLH  358 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~  358 (378)
                      |+|++|+|+.   ..|..+.+|+.|+|.+|.+.+...+.
T Consensus       271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             EECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            9999999993   56788999999999999988665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.23  E-value=3.6e-11  Score=114.44  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=80.7

Q ss_pred             hccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-cc-CCCCCCCcE
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EG-IEILTRVKV  322 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~-f~~LtnLq~  322 (378)
                      ....+...+++.+|++..++. .+..+.+|++|+|++|+|..+++..|..+++|++|+|++|.|..+ .. |..+++|++
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  145 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence            344566677777777777765 344677788888888888888777777778888888888888877 22 577888888


Q ss_pred             EeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+|++|.|+.   ..|..+.+|+.|++.+|+|..+
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            8888888772   4577778888888888877654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.23  E-value=3.1e-11  Score=112.35  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      .+...+++.+|+|..+|....  ..|++|+|++|+|..+.+..|..+++|+.|+|++|.|..+  ..|..+++|++|+|+
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence            344445556666666665433  4566666666666666555566666666666666666665  246666666666666


Q ss_pred             CCCCC-C-CCCCCCCCCCeeeccccccccc
Q 017047          327 FNDFK-G-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|+ . ..+..+.+|+.|++.+|+|+.+
T Consensus       249 ~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          249 NNKLVKVPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             SSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCcCccCChhhccCCCcCEEECCCCcCCcc
Confidence            66666 2 4556666666666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.23  E-value=3.4e-11  Score=117.34  Aligned_cols=109  Identities=16%  Similarity=0.101  Sum_probs=65.1

Q ss_pred             hccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047          246 SGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV  322 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~  322 (378)
                      ....+...+++.+|.|..+ |..+..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+  ..|..+.+|++
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            3344455556666666555 33344556666666666666666655555556666666666666655  34566666666


Q ss_pred             EeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+|++|.|..   ..|..+.+|+.|++.+|.|..+
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            6666666662   4566666666666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.22  E-value=3.1e-11  Score=117.78  Aligned_cols=107  Identities=22%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             cccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCC-CCCCCc--ccCCCCCCCcEE
Q 017047          248 QRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRD-NMLSTL--EGIEILTRVKVL  323 (378)
Q Consensus       248 ~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~-NkLs~L--~~f~~LtnLq~L  323 (378)
                      ..+...+++.+|+|..+|...+ .+.+|++|+|++|+|..++...|..+++|+.|+|.+ |.+..+  ..|..+.+|++|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            3444455555555555554422 355566666666666655555555556666666655 344444  346667777777


Q ss_pred             eCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|+|+ .+.+..+.+|+.|++.+|.|..+
T Consensus       202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             ECCCCcccccccccccccccEEECcCCcCccc
Confidence            77777777 36677777777777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=3.4e-11  Score=124.99  Aligned_cols=126  Identities=18%  Similarity=0.158  Sum_probs=97.1

Q ss_pred             cccccCCCCcccccccc---cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEE
Q 017047          226 VSSGLRNGSLSSSLDRS---SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVY  302 (378)
Q Consensus       226 ~s~~l~~~~l~~~l~rL---~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~Ld  302 (378)
                      +..+.+...|...-++|   ..|....++..+++.+|+|..++. +..+.+|+.|+|++|+|..+.  .|..|++|+.|+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~  159 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLS  159 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCG--GGGSCTTCSEEE
T ss_pred             hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCch--hhcccCCCCEEE
Confidence            44444444444433333   334555667778888998888764 557888999999999999883  577778999999


Q ss_pred             cCCCCCCCcccCCCCCCCcEEeCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047          303 LRDNMLSTLEGIEILTRVKVLDLSFNDFK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       303 Ls~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |++|.|..+..|..|++|+.|+|++|+|+ ...|..|.+|+.|+|.+|.|...
T Consensus       160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred             CcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence            99999998855889999999999999998 47788889999999999988754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.21  E-value=2.9e-11  Score=117.85  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..+|... .++.+|++|||++|+|..+.+..|..+++|+.|+|.+|.|..+  ..|..+.+|+
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            344456667777788888777654 4677888888888888887777777778888888888888776  4677888888


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      .|+|++|+|+.   ..|..+.+|+.|++.+|.|..+
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            88888888873   3467778888888888877654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.21  E-value=3.4e-11  Score=120.26  Aligned_cols=110  Identities=17%  Similarity=0.109  Sum_probs=82.0

Q ss_pred             hhccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..++. .+.++.+|++|||++|+|..+.+..|..+++|++|+|++|.|..+  ..|..+.+|+
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  131 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK  131 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence            4455566667777777777744 345677888888888888888777777778888888888888777  4677888888


Q ss_pred             EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|.|..    ..|..|.+|++|++.+|+|..+
T Consensus       132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             EEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            88888888772    3577788888888888877654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.21  E-value=2.9e-11  Score=114.40  Aligned_cols=106  Identities=15%  Similarity=0.004  Sum_probs=83.2

Q ss_pred             cccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          248 QRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       248 ~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      ..+...+++.+|+|..+|..+.++.+|++|+|++|+|..+++. |..+++|++|+|++|.+.+.  ..|..+++|++|+|
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            4456667777888888888777888888888888888887764 66678888888888877665  56788888888888


Q ss_pred             CCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ++|.+..   ..|..|.+|+.|++.+|.+...
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            8887773   5677888888888888877644

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.21  E-value=6.4e-11  Score=118.32  Aligned_cols=105  Identities=14%  Similarity=0.058  Sum_probs=93.9

Q ss_pred             ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|++..++. .+.++.+|++|||++|+|..+++..|..+++|++|+|++|.|..+  ..|..|.+|++|+|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            456678899999998887 445789999999999999999888888899999999999999988  57999999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCeeecccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      ++|+|+.   ..|+.+.+|+.|++.+|.|..
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  142 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHS  142 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccc
Confidence            9999983   578999999999999999975

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.21  E-value=5.8e-11  Score=114.21  Aligned_cols=110  Identities=20%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             hhccccccccccCCCcee-ec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--cc--CCCCC
Q 017047          245 LSGQRRAGTPQSKDSRFI-VL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EG--IEILT  318 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs-~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~--f~~Lt  318 (378)
                      |....+...+++.+|.+. .+ |..+..+.+|++|||++|+|..+.+..|..+++|++|+|++|.|.+.  ..  |..++
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence            334445556666666664 34 33344667777777777777777666677677777777777777762  22  67777


Q ss_pred             CCcEEeCCCCCCCC--CC--CCCCCCCCeeeccccccccc
Q 017047          319 RVKVLDLSFNDFKG--PG--FEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       319 nLq~LdLS~N~Ls~--~~--f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|+|++|+|..  ..  |..+.+|+.|++.+|+|...
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            77777777777773  22  66777777777777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.20  E-value=1.4e-11  Score=109.90  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             cccccccccCCCc-eeecCcc-cccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCc---
Q 017047          248 QRRAGTPQSKDSR-FIVLPQV-EIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVK---  321 (378)
Q Consensus       248 ~~~~~T~dlrdnr-fs~LP~l-~~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq---  321 (378)
                      ..+...+++.+|+ +..++.. +..+.+|++|+|++ |+|..+++..|..+++|++|+|.+|.|.+++.|..+.+|+   
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~  133 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF  133 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence            3344455555554 5555542 23455666666665 6666666555555566666666666666554455555555   


Q ss_pred             EEeCCCC-CCCC---CCCCCCCCCC-eeeccccccc
Q 017047          322 VLDLSFN-DFKG---PGFEPLENCK-ALQFCSNCIL  352 (378)
Q Consensus       322 ~LdLS~N-~Ls~---~~f~~L~nLk-~LdLsnNrIs  352 (378)
                      +|+|++| +|+.   ..|..+.+|+ .|++.+|.|.
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            6666666 5552   3355555565 6666655554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.20  E-value=3e-11  Score=112.47  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL  325 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL  325 (378)
                      ....+...+++.+|++..++. ...+.+|++|+|++|.|..++  .+..+++|++|+|++|.|..++.+..+++|+.|+|
T Consensus       218 ~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL  294 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             hcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence            334455566667777777665 455667777777777777764  35566777777777777777766777777777777


Q ss_pred             CCCCCCC---CCCCCCCCCCeeeccccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      ++|.|..   ..|..+.+|+.|++.+|.|..+..
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            7777762   445667777777777777776544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=2.2e-11  Score=125.10  Aligned_cols=103  Identities=22%  Similarity=0.208  Sum_probs=92.9

Q ss_pred             ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCC
Q 017047          251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~L  330 (378)
                      ...+++.+|+|..+|. +..+.+|+.|+|++|+|..++. .|..+++|+.|+|++|.|++++.|..|++|+.|+|++|+|
T Consensus       443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence            4568899999999997 7789999999999999998876 5777899999999999999999999999999999999999


Q ss_pred             CC----CCCCCCCCCCeeecccccccccc
Q 017047          331 KG----PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       331 s~----~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +.    ..|..|.+|+.|+|.+|.|+...
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            93    36788999999999999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.20  E-value=2.9e-11  Score=113.23  Aligned_cols=104  Identities=17%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             cccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCC
Q 017047          250 RAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSF  327 (378)
Q Consensus       250 ~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~  327 (378)
                      +...+++.+|+|. .+|..+..+. |+.|+|++|+|.++.+..|..+++|+.|+|++|.|.+. +.+..+++|++|+|++
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence            4566777788887 5666666665 88888888888887777788888899999999988876 6788888999999999


Q ss_pred             CCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          328 NDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+|++   ..|..+.+|+.|++.+|+|+..
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            99882   5677888899999999988743

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.19  E-value=1.3e-11  Score=110.14  Aligned_cols=105  Identities=12%  Similarity=0.157  Sum_probs=92.0

Q ss_pred             cccccccCCCceeecCcc-cccCCCcceEEecCCc-CCccCccccCCCCCccEEEcCC-CCCCCc--ccCCCCCCCcEEe
Q 017047          250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRD-NMLSTL--EGIEILTRVKVLD  324 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~-NkLs~L--~~f~~LtnLq~Ld  324 (378)
                      +...+++.+|+|..+|.. +..+.+|++|+|++|+ |+.+++..|..+++|++|+|++ |.|..+  ..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            556788889999999884 4478999999999997 9999988888889999999998 999988  4688999999999


Q ss_pred             CCCCCCCC-CCCCCCCCCC---eeecccc-ccccc
Q 017047          325 LSFNDFKG-PGFEPLENCK---ALQFCSN-CILLE  354 (378)
Q Consensus       325 LS~N~Ls~-~~f~~L~nLk---~LdLsnN-rIs~i  354 (378)
                      |++|+|+. +.|..+.+|+   .|++.+| .|..+
T Consensus       112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i  146 (239)
T 2xwt_C          112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI  146 (239)
T ss_dssp             EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred             CCCCCCccccccccccccccccEEECCCCcchhhc
Confidence            99999994 6688889998   9999999 87654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.19  E-value=6.2e-11  Score=120.37  Aligned_cols=109  Identities=19%  Similarity=0.154  Sum_probs=84.2

Q ss_pred             hccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcE
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKV  322 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~  322 (378)
                      ....+...+++.+|.|..++. .+..+..|++|+|++|.|..+++..|..+++|++|+|++|.|..+ + .|..+++|++
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence            334566777888888887775 445677888888888888888877777778888888888888887 3 3678888888


Q ss_pred             EeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+|++|.|+.   ..|..|.+|+.|++.+|.|..+
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            8888888883   4577888888888888887754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.18  E-value=6.7e-11  Score=118.16  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=81.2

Q ss_pred             hhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+..++++.+|++..+ |..+.++.+|++|+|++|+|..+.+..|..+++|++|+|++|+|..+  ..|..+++|+
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~  132 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE  132 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred             hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence            44455666777777777765 44455777888888888888877777777778888888888888776  5677788888


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|+|..   ..+..+.+|+.|++.+|.|...
T Consensus       133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A          133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred             EEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence            88888888773   5555677888888888877644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.18  E-value=5e-11  Score=112.22  Aligned_cols=104  Identities=19%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc---cCCCCCCCcEEe
Q 017047          249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE---GIEILTRVKVLD  324 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~---~f~~LtnLq~Ld  324 (378)
                      .+...+++.+|+|..++. .+..+.+|++|||++|+|..++...|..+++|++|+|++|+|..++   .|..+++|++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence            334444444444444432 2334444555555555555544443444455555555555555441   244455555555


Q ss_pred             CCCCC-CCC---CCCCCCCCCCeeeccccccc
Q 017047          325 LSFND-FKG---PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       325 LS~N~-Ls~---~~f~~L~nLk~LdLsnNrIs  352 (378)
                      |++|+ +..   ..|..+.+|+.|++.+|.|.
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            55542 331   34444555555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.18  E-value=3.9e-11  Score=117.88  Aligned_cols=104  Identities=20%  Similarity=0.203  Sum_probs=90.6

Q ss_pred             ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSF  327 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~  327 (378)
                      .+...+++.+|+|..++. .+..+.+|++|+|++|+|..+.+..|..+++|++|+|++|+|..++.. .+.+|++|+|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~   99 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF   99 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence            567778899999988874 456788999999999999999887888889999999999999988555 899999999999


Q ss_pred             CCCCC----CCCCCCCCCCeeecccccccc
Q 017047          328 NDFKG----PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       328 N~Ls~----~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      |+|+.    ..|..|.+|+.|++.+|.|..
T Consensus       100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B          100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             SCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             CccccccchhhhccCCcceEEEecCcccch
Confidence            99983    468899999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.18  E-value=5.6e-11  Score=113.12  Aligned_cols=107  Identities=16%  Similarity=0.130  Sum_probs=94.4

Q ss_pred             ccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      .+...+++.++.+..+|... ..+.+|++|+|++|.|..+++..|..+++|++|+|++|.|..+  ..|..+++|++|+|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            44566788899999999875 4688999999999999999988899999999999999999998  45899999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      ++|+|+.   ..|..+.+|+.|++.+|.|..+.
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            9999993   34789999999999999997653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.18  E-value=5e-11  Score=109.58  Aligned_cols=109  Identities=18%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             hccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCc-cCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRS-LIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~Lss-L~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      ....+...+++.+|++..++.. +..+..|++|+|++|.|.. +.+..|..+++|++|+|++|.|..+  ..|..+++|+
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            3344566677777777665443 3456778888888888775 3444566677888888888888776  4677788888


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|+|+.   ..|..+.+|+.|++.+|+|...
T Consensus       203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             EEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            88888888873   3567778888888888887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.18  E-value=6.2e-11  Score=118.42  Aligned_cols=105  Identities=13%  Similarity=0.018  Sum_probs=94.3

Q ss_pred             cccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          250 RAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      ....+++.+|+|..++. .+.++.+|++|||++|+|..+.+..|..+++|++|+|++|.|..+  ..|..+++|++|+|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            45778899999999854 556889999999999999999888899999999999999999987  578999999999999


Q ss_pred             CCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          327 FNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|+.   ..|..+.+|++|++.+|+|..+
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCccccc
Confidence            999994   6789999999999999999865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.17  E-value=6.3e-11  Score=110.10  Aligned_cols=105  Identities=19%  Similarity=0.211  Sum_probs=80.2

Q ss_pred             ccccccccccCCCceeecCcc----cccCCCcceEEecCCcCCccCccccCCC---CCccEEEcCCCCCCCc-ccCCCCC
Q 017047          247 GQRRAGTPQSKDSRFIVLPQV----EIKAGDDVRLDLRGHRVRSLIASGLNLQ---PNLEFVYLRDNMLSTL-EGIEILT  318 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~l----~~KlssL~~LDLSgN~LssL~~s~f~lL---~nLe~LdLs~NkLs~L-~~f~~Lt  318 (378)
                      ...+...+++.+|+|..++..    ...+..|++|||++|+|..+.+..+..+   ++|++|+|++|+|+.+ ..+.  +
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~  272 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A  272 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C
Confidence            344577788888888777763    3456888899999999988744444433   6899999999998887 4443  7


Q ss_pred             CCcEEeCCCCCCCC-CCCCCCCCCCeeecccccccc
Q 017047          319 RVKVLDLSFNDFKG-PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       319 nLq~LdLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      +|++|||++|+|+. +.+..+.+|+.|++.+|.|+.
T Consensus       273 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          273 KLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             CCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence            88999999999885 667888889999999998864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.17  E-value=4.9e-11  Score=124.80  Aligned_cols=83  Identities=22%  Similarity=0.284  Sum_probs=54.2

Q ss_pred             CCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeec
Q 017047          272 GDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQF  346 (378)
Q Consensus       272 ssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdL  346 (378)
                      ..|+.|||++|+|.+..+..|..++.|+.|+|++|+|++.  ..|+.|++|+.|||++|+|++   ..|..|..|+.|++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            3455666666666665555566666677777777777644  556677777777777777763   45666667777777


Q ss_pred             cccccccc
Q 017047          347 CSNCILLE  354 (378)
Q Consensus       347 snNrIs~i  354 (378)
                      ++|+|++.
T Consensus       712 s~N~l~g~  719 (768)
T 3rgz_A          712 SNNNLSGP  719 (768)
T ss_dssp             CSSEEEEE
T ss_pred             cCCccccc
Confidence            77776643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.16  E-value=7.3e-11  Score=116.22  Aligned_cols=110  Identities=19%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             hhccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc--cCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~--~f~~LtnLq  321 (378)
                      |....+...+++.+|++..++.. +.++.+|++|+|++|+|..+++..|..+.+|++|+|++|.|..++  .|..|.+|+
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  127 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence            44556677788888888887654 456788888888888888888777888888888888888888873  588888888


Q ss_pred             EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|.|+.    ..|..|.+|+.|++.+|.|..+
T Consensus       128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             EEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            88888888873    4577788888888888887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.16  E-value=1.1e-10  Score=118.50  Aligned_cols=110  Identities=18%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             hhccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..++. .+.++..|++|+|++|+|..+++..|..+.+|++|+|++|+|..+  ..|..|++|+
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            4444555666666666666543 334667777777777777777766666667777777777777766  3567777777


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|.|+.   ..|..+.+|+.|++.+|.|...
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            77777777763   4456677777777777766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.16  E-value=2e-11  Score=101.36  Aligned_cols=99  Identities=20%  Similarity=0.167  Sum_probs=83.5

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|+|..+ ..+..+..|++|+|++|+|....+..+..+++|++|+|++|.|..+   ..|..+++|++|+|
T Consensus        42 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           42 EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            4566678888888888 5566788999999999999996555666679999999999999986   67899999999999


Q ss_pred             CCCCCCC-C-----CCCCCCCCCeeeccc
Q 017047          326 SFNDFKG-P-----GFEPLENCKALQFCS  348 (378)
Q Consensus       326 S~N~Ls~-~-----~f~~L~nLk~LdLsn  348 (378)
                      ++|.|+. .     .|..+.+|+.|++.+
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999994 3     478889999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.16  E-value=1.3e-10  Score=114.41  Aligned_cols=104  Identities=14%  Similarity=0.080  Sum_probs=92.7

Q ss_pred             cccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047          250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS  326 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS  326 (378)
                      ....+++.+|+|..++.. +..+.+|++|||++|+|..+++..|..+++|++|+|++|.|..+  ..|..+.+|++|+|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            456688899999888764 45789999999999999999988899899999999999999988  579999999999999


Q ss_pred             CCCCCC---CCCCCCCCCCeeecccccccc
Q 017047          327 FNDFKG---PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      +|+|+.   ..|..|.+|++|++.+|.|..
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  138 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCC
T ss_pred             ccccccCCCccccccccccEEecCCCccce
Confidence            999993   358999999999999999875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.15  E-value=4.4e-11  Score=112.62  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=91.6

Q ss_pred             cccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeCC
Q 017047          250 RAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDLS  326 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdLS  326 (378)
                      +...+++.+|+|..+|. .+.++.+|++|+|++|+|..+.+..|..+++|++|+|++|+|..+ . .|..+++|++|+|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            56778899999999887 456789999999999999999888888889999999999999998 3 48999999999999


Q ss_pred             CCCCCC----CCCCCCCCCCeeeccccc-cccc
Q 017047          327 FNDFKG----PGFEPLENCKALQFCSNC-ILLE  354 (378)
Q Consensus       327 ~N~Ls~----~~f~~L~nLk~LdLsnNr-Is~i  354 (378)
                      +|+|+.    ..|..+.+|+.|++.+|. +..+
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence            999993    258899999999999984 5543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.15  E-value=2.7e-11  Score=114.61  Aligned_cols=104  Identities=26%  Similarity=0.207  Sum_probs=74.4

Q ss_pred             ccccccccCC-CceeecCccccc---------CCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCC
Q 017047          249 RRAGTPQSKD-SRFIVLPQVEIK---------AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEIL  317 (378)
Q Consensus       249 ~~~~T~dlrd-nrfs~LP~l~~K---------lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~L  317 (378)
                      .+...+++.+ +.+..+|..+..         +..|++|+|++|+|..++.. |..+++|++|+|++|.|.++ +.|..+
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l  228 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHL  228 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCchhhccC
Confidence            3444555555 334445554432         66777777777777766643 66668888888888888888 678888


Q ss_pred             CCCcEEeCCCCCCCC---CCCCCCCCCCeeecccccccc
Q 017047          318 TRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       318 tnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      ++|++|+|++|++..   ..|..+.+|+.|++.+|.+..
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            888888888888773   567888888888888887653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.15  E-value=4.1e-11  Score=117.79  Aligned_cols=105  Identities=15%  Similarity=0.139  Sum_probs=89.0

Q ss_pred             chhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCC
Q 017047          244 NLSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTR  319 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~Ltn  319 (378)
                      .|....+..++++.+|+|..+ |..+..+.+|++|||++|+|..++..   .+++|++|+|++|+|.++   ..|..+++
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCc
Confidence            355566788889999999887 55666889999999999999988864   568999999999999874   57899999


Q ss_pred             CcEEeCCCCCCCCCCCCCCCCC--Ceeecccccc
Q 017047          320 VKVLDLSFNDFKGPGFEPLENC--KALQFCSNCI  351 (378)
Q Consensus       320 Lq~LdLS~N~Ls~~~f~~L~nL--k~LdLsnNrI  351 (378)
                      |++|+|++|+|+...|..+.+|  +.|++.+|.|
T Consensus       117 L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred             ceEEEecCcccchhhccccccceeeEEEeecccc
Confidence            9999999999986667777788  9999999988

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.15  E-value=1.4e-10  Score=114.30  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCcccc-----------------CCCCCccEEEcCCCCC
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGL-----------------NLQPNLEFVYLRDNML  308 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f-----------------~lL~nLe~LdLs~NkL  308 (378)
                      ....+...+++.+|+|..+|.....+..|++|+|++|+|..++...+                 ..+++|++|+|++|+|
T Consensus       384 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL  463 (549)
T ss_dssp             GGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             hcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence            34455666777788888777766666777777777777766553211                 1345666666666666


Q ss_pred             CCcccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          309 STLEGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       309 s~L~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ..++.+..+++|++|||++|+|+.   ..|..+.+|+.|++.+|.+.+.
T Consensus       464 ~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          464 KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             SSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             CcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            666555566667777777776663   2356666777777777766544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.14  E-value=1.3e-10  Score=116.31  Aligned_cols=104  Identities=22%  Similarity=0.218  Sum_probs=88.1

Q ss_pred             ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSF  327 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~  327 (378)
                      .+...+++.+|+|..+|. .+..+.+|++|+|++|+|+.+.+..|..+++|++|+|++|+|..++.. .+.+|++|||++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~  130 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF  130 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence            466778888998988885 455788899999999999999888888889999999999999988554 899999999999


Q ss_pred             CCCCC----CCCCCCCCCCeeecccccccc
Q 017047          328 NDFKG----PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       328 N~Ls~----~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      |+|+.    ..|..|.+|+.|++.+|+|..
T Consensus       131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCccccCchHhhcccCcccEEecCCCcccc
Confidence            99983    368889999999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.14  E-value=9e-11  Score=109.89  Aligned_cols=106  Identities=16%  Similarity=0.051  Sum_probs=74.2

Q ss_pred             ccccccccccCCCcee-ecCcccccCC-CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047          247 GQRRAGTPQSKDSRFI-VLPQVEIKAG-DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV  322 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs-~LP~l~~Kls-sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~  322 (378)
                      ...+...+++.+|+|. .+|..+..+. .|++|+|++|+|.+..+..|..+. |++|+|++|.|.+.  ..|..+++|++
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence            3445556666777776 5666666665 677777777777755555555544 77777777777654  56777888888


Q ss_pred             EeCCCCCCCC--CCCCCCCCCCeeecccccccc
Q 017047          323 LDLSFNDFKG--PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       323 LdLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      |+|++|+|++  ..+..+.+|++|++.+|+|..
T Consensus       226 L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             EECCSSEECCBGGGCCCCTTCCEEECCSSCCEE
T ss_pred             EECCCCceeeecCcccccCCCCEEECcCCcccC
Confidence            8888888873  557777888888888888863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.13  E-value=9.6e-11  Score=109.18  Aligned_cols=79  Identities=24%  Similarity=0.328  Sum_probs=35.4

Q ss_pred             CCcceEEecCCcCCccCc-cccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC-CCCCCCCCCCeeeccc
Q 017047          272 GDDVRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQFCS  348 (378)
Q Consensus       272 ssL~~LDLSgN~LssL~~-s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~-~~f~~L~nLk~LdLsn  348 (378)
                      .+|++|||++|+|.++.+ ..+..+++|++|+|++|+|+.+ ..+.  .+|++|||++|+|+. +.|..+.+|+.|++.+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKG  305 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTT
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccC
Confidence            444445555554444331 2233334455555555544444 2222  444555555555442 3344444445555555


Q ss_pred             cccc
Q 017047          349 NCIL  352 (378)
Q Consensus       349 NrIs  352 (378)
                      |.|+
T Consensus       306 N~l~  309 (312)
T 1wwl_A          306 NPFL  309 (312)
T ss_dssp             CTTT
T ss_pred             CCCC
Confidence            5444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.13  E-value=2.1e-10  Score=106.68  Aligned_cols=104  Identities=14%  Similarity=0.081  Sum_probs=49.8

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCCcccCCCCCCCcEEeCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLEGIEILTRVKVLDLSF  327 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L~~f~~LtnLq~LdLS~  327 (378)
                      .+..++++.+|+|..+|. +..+.+|++|+|++|+|..++.  +..+++|+.|+|++|. +..+..+..+++|++|+|++
T Consensus        88 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~  164 (347)
T 4fmz_A           88 VKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE  164 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred             CcCCEEEccCCcccCchH-HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecC
Confidence            334444444444444432 3344445555555555544443  3344445555555542 22224445555555555555


Q ss_pred             CCCCC-CCCCCCCCCCeeecccccccccc
Q 017047          328 NDFKG-PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       328 N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |.+.. ..|..+.+|+.|++.+|.|..+.
T Consensus       165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          165 SKVKDVTPIANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             SCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred             CCcCCchhhccCCCCCEEEccCCcccccc
Confidence            55552 33555556666666666655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.13  E-value=1.6e-10  Score=114.73  Aligned_cols=95  Identities=12%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN  328 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N  328 (378)
                      .+...+++.+|+|..+|  +..+.+|++|+|++|+|.+++   +..+++|++|+|++|+|.+++ |..+++|++|+|++|
T Consensus        64 ~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARN  137 (457)
T ss_dssp             TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTS
T ss_pred             CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCC
Confidence            33444455555555443  334445555555555555542   344455555555555555543 455555555555555


Q ss_pred             CCCCCCCCCCCCCCeeecccc
Q 017047          329 DFKGPGFEPLENCKALQFCSN  349 (378)
Q Consensus       329 ~Ls~~~f~~L~nLk~LdLsnN  349 (378)
                      +|+...+..+.+|+.|++.+|
T Consensus       138 ~l~~l~l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          138 TLTEIDVSHNTQLTELDCHLN  158 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTC
T ss_pred             ccceeccccCCcCCEEECCCC
Confidence            555333455555555555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.13  E-value=6.4e-11  Score=110.59  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             ccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCC
Q 017047          251 AGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N  328 (378)
                      ...+++.+|+|..++. .+..+..|+.|+|++|+|..+++..|..+++|+.|+|++|+|..+ ..|..+++|++|+|++|
T Consensus       195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence            3444555555555442 233455555555555555555544454455555555555555555 34555555555555555


Q ss_pred             CCCC---CCCCC------CCCCCeeeccccccc
Q 017047          329 DFKG---PGFEP------LENCKALQFCSNCIL  352 (378)
Q Consensus       329 ~Ls~---~~f~~------L~nLk~LdLsnNrIs  352 (378)
                      +|+.   ..|..      +..|+.|++.+|.+.
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCCccChhHccccccccccccccceEeecCccc
Confidence            5551   22222      233455555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.13  E-value=6.9e-11  Score=110.38  Aligned_cols=104  Identities=19%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             ccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCcccc-CCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047          251 AGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGL-NLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN  328 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f-~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N  328 (378)
                      ...+++.+|+|..++... ..+..|++|||++|+|..+.+..+ ..+++|++|+|++|.|..++.+..+.+|++|+|++|
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN  201 (317)
T ss_dssp             CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS
T ss_pred             CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC
Confidence            344555566666654432 345667777777777776654444 245667777777777766655555777777777777


Q ss_pred             CCCC--CCCCCCCCCCeeeccccccccc
Q 017047          329 DFKG--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+.  ..|..+.+|+.|++.+|+|..+
T Consensus       202 ~l~~l~~~~~~l~~L~~L~L~~N~l~~l  229 (317)
T 3o53_A          202 KLAFMGPEFQSAAGVTWISLRNNKLVLI  229 (317)
T ss_dssp             CCCEECGGGGGGTTCSEEECTTSCCCEE
T ss_pred             cCCcchhhhcccCcccEEECcCCcccch
Confidence            7772  4566677777777777777643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.13  E-value=7.5e-11  Score=118.01  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=86.4

Q ss_pred             chhccccccccccCCCceeecC-cccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCC
Q 017047          244 NLSGQRRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTR  319 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~Ltn  319 (378)
                      .|....+...+++.+|+|..++ ..+..+.+|++|||++|+|+.++..   .+++|++|+|++|+|..+   ..|..+++
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCc
Confidence            4556667788888999998874 4556788999999999999988865   568899999999999876   47889999


Q ss_pred             CcEEeCCCCCCCCCCCCCCCCC--Ceeecccccc
Q 017047          320 VKVLDLSFNDFKGPGFEPLENC--KALQFCSNCI  351 (378)
Q Consensus       320 Lq~LdLS~N~Ls~~~f~~L~nL--k~LdLsnNrI  351 (378)
                      |++|+|++|+|+...|..+.+|  +.|++.+|.|
T Consensus       148 L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             ccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            9999999999986566666766  9999999988

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.12  E-value=1.2e-10  Score=114.73  Aligned_cols=100  Identities=20%  Similarity=0.172  Sum_probs=45.3

Q ss_pred             ccccccCCCceeecC-cccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047          251 AGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF  327 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~  327 (378)
                      ...+++.+|+|..++ ..+..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|.++  ..|..+++|++|+|++
T Consensus        28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  107 (549)
T 2z81_A           28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG  107 (549)
T ss_dssp             CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred             ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence            334444444444432 2223444445555555555444444444444455555555544444  1244444555555555


Q ss_pred             CCCCC----CCCCCCCCCCeeeccccc
Q 017047          328 NDFKG----PGFEPLENCKALQFCSNC  350 (378)
Q Consensus       328 N~Ls~----~~f~~L~nLk~LdLsnNr  350 (378)
                      |+|+.    ..|..+.+|+.|++.+|.
T Consensus       108 n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          108 NPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CcccccchhhhhhccCCccEEECCCCc
Confidence            54441    234444444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.12  E-value=3.3e-10  Score=105.38  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=90.4

Q ss_pred             ccccccccCCCceeecC-cccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCC
Q 017047          249 RRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLS  326 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS  326 (378)
                      .+...+++.+|+|..++ ..+..+.+|+.|+|++|+|..+++..|..+++|++|+|++|+|..+ ..+..+++|++|+|+
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            35667788999998874 4556889999999999999999887788889999999999999998 679999999999999


Q ss_pred             CCCCCC---CCCCC------CCCCCeeeccccccccc
Q 017047          327 FNDFKG---PGFEP------LENCKALQFCSNCILLE  354 (378)
Q Consensus       327 ~N~Ls~---~~f~~------L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|+.   ..|..      +..|..|++.+|.+..+
T Consensus       272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence            999993   34433      36789999999999765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=1.7e-10  Score=117.20  Aligned_cols=107  Identities=16%  Similarity=0.150  Sum_probs=94.6

Q ss_pred             ccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|.|..+|...+ .+.+|+.|+|++|.|..+++..|..+++|++|+|++|.|.++  ..|..|++|++|+|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            345667788999999998764 688999999999999999988899999999999999999998  45799999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      ++|.|+.   ..|..+.+|+.|++.+|.|..+.
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  163 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  163 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence            9999993   44789999999999999998653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.12  E-value=4.2e-11  Score=111.64  Aligned_cols=106  Identities=15%  Similarity=0.079  Sum_probs=71.6

Q ss_pred             ccccccccCCCceeecC-cccccCCCcceEEecCCcCCcc---Ccc-ccCCCCCccEEEcCCCCCCCcc-----cCCCCC
Q 017047          249 RRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSL---IAS-GLNLQPNLEFVYLRDNMLSTLE-----GIEILT  318 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL---~~s-~f~lL~nLe~LdLs~NkLs~L~-----~f~~Lt  318 (378)
                      .+...+++.+|+|..++ ..+..+.+|++|||++|+|.+.   +.. .+..+++|++|+|++|+|..++     .+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            45666777777777777 3444677778888888876542   111 2255677888888888877541     234667


Q ss_pred             CCcEEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          319 RVKVLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       319 nLq~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|||++|+|+.    ..+..+.+|+.|++.+|+|+.+
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i  268 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV  268 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence            88888888888873    3455667888888888887744

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=1.5e-10  Score=99.86  Aligned_cols=84  Identities=19%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             ccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|+|..++.. +..+.+|++|||++|+|+.+++..|..+++|++|+|++|+|.++ + .|..+.+|++|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            4556788999999998554 55789999999999999999998888889999999999999999 3 5899999999999


Q ss_pred             CCCCCCC
Q 017047          326 SFNDFKG  332 (378)
Q Consensus       326 S~N~Ls~  332 (378)
                      ++|.|..
T Consensus       110 ~~N~~~c  116 (170)
T 3g39_A          110 LNNPWDC  116 (170)
T ss_dssp             CSSCBCT
T ss_pred             CCCCCCC
Confidence            9999984

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.11  E-value=1.7e-10  Score=113.04  Aligned_cols=100  Identities=16%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC
Q 017047          252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK  331 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls  331 (378)
                      ..+++.+|+|..++. ...+..|+.|+|++|+|..+++  +..+++|+.|+|++|+|.++..+..+++|+.|+|++|.|+
T Consensus       268 ~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          268 TELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             SEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccC
Confidence            334444444444443 3334445555555555554443  3334455555555555554433445555555555555555


Q ss_pred             C-CCCCCCCCCCeeeccccccccc
Q 017047          332 G-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       332 ~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      . ..+..|.+|+.|++.+|+|..+
T Consensus       345 ~~~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          345 DVSSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCBC
T ss_pred             CchhhccCCCCCEEeCCCCccCcc
Confidence            2 4445555555555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.10  E-value=1.6e-10  Score=107.98  Aligned_cols=104  Identities=13%  Similarity=0.081  Sum_probs=89.7

Q ss_pred             ccccccccccCCCceeecCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047          247 GQRRAGTPQSKDSRFIVLPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL  323 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L  323 (378)
                      ...+...+++.+|+|..++....  .+..|++|+|++|+|..++..  ..+++|++|+|++|+|..+ +.|..+++|++|
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L  219 (317)
T 3o53_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI  219 (317)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred             ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhhhcccCcccEE
Confidence            34567778899999998754432  578999999999999999643  3468999999999999999 779999999999


Q ss_pred             eCCCCCCCC--CCCCCCCCCCeeeccccccc
Q 017047          324 DLSFNDFKG--PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       324 dLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs  352 (378)
                      +|++|+|+.  ..|..+.+|+.|++.+|.|.
T Consensus       220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            999999993  67889999999999999998

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.09  E-value=2.5e-10  Score=111.81  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=71.3

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL  325 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL  325 (378)
                      ....+...+++.+|++..++. ...+..|+.|+|++|+|..+++  +..+++|+.|+|++|+|.++..+..+++|+.|+|
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  316 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTL  316 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred             hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEEC
Confidence            334445556666666666654 4456667777777777776654  5556777777777777777755777777777777


Q ss_pred             CCCCCCC-CCCCCCCCCCeeecccccccccc
Q 017047          326 SFNDFKG-PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       326 S~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      ++|+|+. ..+..+.+|+.|++.+|.|....
T Consensus       317 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          317 YFNNISDISPVSSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             CSSCCSCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             cCCcCCCchhhccCccCCEeECCCCccCCch
Confidence            7777773 33667777777777777776553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.09  E-value=1.2e-10  Score=116.55  Aligned_cols=102  Identities=21%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             cccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccC-CCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047          252 GTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND  329 (378)
Q Consensus       252 ~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~-lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~  329 (378)
                      ..+++.+|+|..++. .+..+..|+.|||++|.|.++.+..|. .+++|+.|+|++|.|.+++.+..+++|++|+|++|.
T Consensus       123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCC
Confidence            344455555555433 223455666666666666665444443 446666666666666666555556666666666666


Q ss_pred             CCC--CCCCCCCCCCeeecccccccc
Q 017047          330 FKG--PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       330 Ls~--~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      |+.  ..|..+.+|+.|++.+|.|..
T Consensus       203 l~~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          203 LAFMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CCCCCHhHcCCCCccEEEecCCcCcc
Confidence            662  445666666666666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.09  E-value=2e-10  Score=116.57  Aligned_cols=106  Identities=19%  Similarity=0.164  Sum_probs=94.6

Q ss_pred             ccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc--cCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~--~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|+|..+|.. +.++.+|++|||++|+|..+.+..|..+++|++|+|++|.|..++  .|..|.+|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4677788999999998875 457899999999999999998888888899999999999999993  5999999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ++|+|+.   ..|..|.+|+.|++.+|.|...
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  136 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSST  136 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCccccc
Confidence            9999993   5689999999999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=2.5e-10  Score=99.26  Aligned_cols=84  Identities=13%  Similarity=0.113  Sum_probs=74.6

Q ss_pred             ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|+|..++. .+..+.+|++|+|++|+|+.+++..|..+++|++|+|++|+|..+ + .|..+.+|++|+|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            456678899999999855 455789999999999999999988888889999999999999999 4 4899999999999


Q ss_pred             CCCCCCC
Q 017047          326 SFNDFKG  332 (378)
Q Consensus       326 S~N~Ls~  332 (378)
                      ++|.|..
T Consensus       113 ~~N~~~c  119 (174)
T 2r9u_A          113 YNNPWDC  119 (174)
T ss_dssp             CSSCBCT
T ss_pred             CCCCccc
Confidence            9999984

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.07  E-value=3.6e-10  Score=105.50  Aligned_cols=106  Identities=9%  Similarity=0.057  Sum_probs=64.4

Q ss_pred             hhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..+ |..+..+.+|++|+|++|+|..++...+   ++|++|+|++|+|..+  ..|..+++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            33344455566666666665 3344456666666666666666654332   5666777777766666  2366677777


Q ss_pred             EEeCCCCCCC---C--CCCCCCCCCCeeeccccccccc
Q 017047          322 VLDLSFNDFK---G--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       322 ~LdLS~N~Ls---~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+|++|.|+   .  ..|..+ +|+.|++.+|+|..+
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             EEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            7777777764   1  344555 677777777766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.06  E-value=7e-10  Score=110.20  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=77.8

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL  325 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL  325 (378)
                      ....+...+++.+|+|..+|  +..+.+|++|+|++|+|..++   +..+++|++|+|++|+|.++ .+..+++|++|+|
T Consensus        82 ~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l  155 (457)
T 3bz5_A           82 SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDC  155 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEEC
T ss_pred             ccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee-ccccCCcCCEEEC
Confidence            33455667777888887775  456778888888888888874   66678888888888888877 4778888888888


Q ss_pred             CCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047          326 SFNDFK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       326 S~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ++|.+. ...|..+.+|+.|++.+|+|+.+
T Consensus       156 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          156 HLNKKITKLDVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             TTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCcccccccccCCcCCEEECCCCcccee
Confidence            888544 34677788888888888888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.04  E-value=1.4e-10  Score=115.94  Aligned_cols=105  Identities=12%  Similarity=0.039  Sum_probs=85.9

Q ss_pred             ccccccccccCCCceeecC-cccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047          247 GQRRAGTPQSKDSRFIVLP-QVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL  323 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP-~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L  323 (378)
                      ...+...+++.+|+|..++ ..+. .+..|+.|+|++|.|.+++.  +..+++|+.|+|++|.|.++ +.|..+++|+.|
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  219 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI  219 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence            3456677888899888744 3333 67899999999999998864  33468999999999999988 778899999999


Q ss_pred             eCCCCCCCC--CCCCCCCCCCeeecccccccc
Q 017047          324 DLSFNDFKG--PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       324 dLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      ||++|.|+.  ..|..+.+|+.|++.+|.|.+
T Consensus       220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             ECTTSCCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred             EecCCcCcccchhhccCCCCCEEEcCCCCCcC
Confidence            999999993  667888899999999999873

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.04  E-value=4.9e-10  Score=117.30  Aligned_cols=104  Identities=20%  Similarity=0.131  Sum_probs=53.8

Q ss_pred             ccccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          249 RRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       249 ~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      .+...+++.+|+|. .+|..+..+..|+.|+|++|+|.+..+..|..+++|+.|+|++|+|.+.  ..|..+++|++|+|
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            34444555555555 3444444555555555555555544444444445555555555555533  34555555555555


Q ss_pred             CCCCCCC---CCCCCCCCCCeeeccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs  352 (378)
                      ++|+|++   ..|+.+.+|+.|++.+|+|.
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            5555552   33444555555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.03  E-value=2.3e-12  Score=112.68  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=93.0

Q ss_pred             chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEE
Q 017047          244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVL  323 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~L  323 (378)
                      .+....+...+++.+|+|..+| .+..+.+|++|+|++|+|..++. .+..+++|+.|+|++|+|.+++.|..+++|++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L  120 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence            3555566778889999999998 66678899999999999998875 345558899999999999999888999999999


Q ss_pred             eCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|+|+.    ..+..+.+|+.|++.+|.|...
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            999999994    3578899999999999998654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=3.3e-10  Score=107.43  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=58.1

Q ss_pred             ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcE-EeCCCC
Q 017047          253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKV-LDLSFN  328 (378)
Q Consensus       253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~-LdLS~N  328 (378)
                      +++..++++..+|..+  ..++++|+|++|+|+.|+...|..+++|++|+|++|+|.+.   ..|.+|.+|.. +++.+|
T Consensus        13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            3445555666666533  24566666666666666665566666666666666665442   34556665543 445556


Q ss_pred             CCCC---CCCCCCCCCCeeeccccccccc
Q 017047          329 DFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+.   ..|..|.+|+.|++.+|+|..+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             cccccCchhhhhccccccccccccccccC
Confidence            6662   4456666666666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.01  E-value=2.9e-10  Score=119.85  Aligned_cols=109  Identities=20%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             hhcccccc-ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcE
Q 017047          245 LSGQRRAG-TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKV  322 (378)
Q Consensus       245 L~~~~~~~-T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~  322 (378)
                      +..+++.+ .+++.+|++...|..+..+..|+.|||++|+|..|+...| .+++|++|+|++|.|..+ ..|..|.+|++
T Consensus       196 l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  274 (727)
T 4b8c_D          196 KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRV  274 (727)
T ss_dssp             --------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCE
T ss_pred             CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCE
Confidence            44444433 3455677777777777788999999999999999988766 569999999999999988 67999999999


Q ss_pred             EeCCCCCCC-C-CCCCCCCCCCeeeccccccccc
Q 017047          323 LDLSFNDFK-G-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       323 LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |||++|.|+ + ..|+.|.+|++|+|.+|.|..+
T Consensus       275 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l  308 (727)
T 4b8c_D          275 LDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL  308 (727)
T ss_dssp             EECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred             EeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc
Confidence            999999999 4 6789999999999999999755

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.99  E-value=6e-10  Score=117.82  Aligned_cols=110  Identities=21%  Similarity=0.141  Sum_probs=81.0

Q ss_pred             hhccccccccccCCCc-eeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--c--cCCCCC
Q 017047          245 LSGQRRAGTPQSKDSR-FIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--E--GIEILT  318 (378)
Q Consensus       245 L~~~~~~~T~dlrdnr-fs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~--~f~~Lt  318 (378)
                      |....+...+++.+|. +..+ |..+.++.+|++|+|++|.|..+.+..|..+.+|++|+|++|.|.+.  .  .|..|+
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            4444556667777763 3344 55556778888888888888888777788788888888888888762  3  378888


Q ss_pred             CCcEEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          319 RVKVLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       319 nLq~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|||++|.|..    ..|..|.+|+.|++.+|.|...
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            88888888888873    3577888888888888887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.99  E-value=1.1e-09  Score=115.92  Aligned_cols=105  Identities=15%  Similarity=0.061  Sum_probs=89.4

Q ss_pred             cccccccCCCceeecC-cccccCCCcceEEecCCc-CCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          250 RAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      +...+|+.+|+|..++ ..+..+.+|++|||++|. +..+++..|..+++|++|+|++|.|..+  ..|..|.+|++|+|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  104 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL  104 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence            4566788888888764 455688999999999994 5567677889999999999999999988  68999999999999


Q ss_pred             CCCCCCC---C--CCCCCCCCCeeeccccccccc
Q 017047          326 SFNDFKG---P--GFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       326 S~N~Ls~---~--~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ++|.|..   .  .|..|.+|+.|++.+|.|...
T Consensus       105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A          105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             cCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence            9999983   2  388999999999999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.98  E-value=9.4e-10  Score=113.08  Aligned_cols=100  Identities=17%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq  321 (378)
                      |....+...+++.+|+|..+|..+..+..|+.|+|++|+|++++  .|..+++|+.|+|++|+|.++   ..|..|++|+
T Consensus       459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence            55556678899999999999998889999999999999999987  588889999999999999987   5789999999


Q ss_pred             EEeCCCCCCCC--CCCC----CCCCCCeeec
Q 017047          322 VLDLSFNDFKG--PGFE----PLENCKALQF  346 (378)
Q Consensus       322 ~LdLS~N~Ls~--~~f~----~L~nLk~LdL  346 (378)
                      .|+|++|.|+.  +.+.    .|++|+.|++
T Consensus       537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          537 LLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999994  2222    3678888754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.98  E-value=9.5e-10  Score=113.06  Aligned_cols=104  Identities=18%  Similarity=0.078  Sum_probs=57.9

Q ss_pred             ccccccccCCCceeecCcccccCC--------CcceEEecCCcCCccCcccc-CCCCCccEEEcCCCCCCCc-ccCCCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAG--------DDVRLDLRGHRVRSLIASGL-NLQPNLEFVYLRDNMLSTL-EGIEILT  318 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~Kls--------sL~~LDLSgN~LssL~~s~f-~lL~nLe~LdLs~NkLs~L-~~f~~Lt  318 (378)
                      .+...+++.+|+|..+|...+...        .|+.|+|++|+|..++...+ ..+++|+.|+|++|+|.++ ..+..++
T Consensus       457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~  536 (636)
T 4eco_A          457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS  536 (636)
T ss_dssp             CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCS
T ss_pred             CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCC
Confidence            334445555666665555443221        56666666666665554333 2446666666666666666 4555666


Q ss_pred             CCcEEeCC------CCCCCC---CCCCCCCCCCeeeccccccc
Q 017047          319 RVKVLDLS------FNDFKG---PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       319 nLq~LdLS------~N~Ls~---~~f~~L~nLk~LdLsnNrIs  352 (378)
                      +|++|+|+      +|+|..   ..|..|.+|+.|++.+|+|.
T Consensus       537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  579 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR  579 (636)
T ss_dssp             SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred             CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence            66666663      344442   34555666666666666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.96  E-value=3.3e-10  Score=105.26  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=47.6

Q ss_pred             cccccccCCCceeecCcc-cccCCCcceEEecCCcCCc---cCcc-ccCCCCCccEEEcCCCCCCCccc-----CCCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRS---LIAS-GLNLQPNLEFVYLRDNMLSTLEG-----IEILTR  319 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~Lss---L~~s-~f~lL~nLe~LdLs~NkLs~L~~-----f~~Ltn  319 (378)
                      +...+++.+|+|..++.. +..+.+|++|||++|+|.+   ++.. .+..+++|++|+|++|+|+.++.     +..+.+
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~  225 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ  225 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence            344445555555544432 2245555555555555543   2111 12334555555555555554421     234455


Q ss_pred             CcEEeCCCCCCCC---CCCCCC---CCCCeeeccccccc
Q 017047          320 VKVLDLSFNDFKG---PGFEPL---ENCKALQFCSNCIL  352 (378)
Q Consensus       320 Lq~LdLS~N~Ls~---~~f~~L---~nLk~LdLsnNrIs  352 (378)
                      |++|||++|+|..   ..+..+   .+|+.|++.+|+|+
T Consensus       226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            5555555555552   223333   35555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.96  E-value=4.5e-10  Score=115.46  Aligned_cols=108  Identities=12%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             hhccccccccccCCCceee------------------cCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcC
Q 017047          245 LSGQRRAGTPQSKDSRFIV------------------LPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLR  304 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~------------------LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs  304 (378)
                      |....+...+++.+|+|..                  +|..+.  ++.+|++|+|++|++.+..+..|..+++|++|+|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            3344556667777777777                  777766  77777777777777776665666667777777777


Q ss_pred             CCC-CCC--c-ccCCCC------CCCcEEeCCCCCCC-C-C--CCCCCCCCCeeeccccccc
Q 017047          305 DNM-LST--L-EGIEIL------TRVKVLDLSFNDFK-G-P--GFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       305 ~Nk-Ls~--L-~~f~~L------tnLq~LdLS~N~Ls-~-~--~f~~L~nLk~LdLsnNrIs  352 (378)
                      +|+ |++  + ..++.+      ++|++|+|++|+|+ . .  .|..+.+|+.|++.+|+|.
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence            776 765  3 334443      77777777777776 3 2  3667777777777777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=1.6e-09  Score=101.43  Aligned_cols=87  Identities=20%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             hhccccccccccCC-CceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-cc-CCCCCCC
Q 017047          245 LSGQRRAGTPQSKD-SRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EG-IEILTRV  320 (378)
Q Consensus       245 L~~~~~~~T~dlrd-nrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~-f~~LtnL  320 (378)
                      |....+...+++.+ |+|..+|.. +..+.+|+.|||++|+|+++++..|..+++|+.|+|++|+|.++ +. |..+. |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            44455677889986 999999965 45799999999999999999998899899999999999999999 44 44454 9


Q ss_pred             cEEeCCCCCCCC
Q 017047          321 KVLDLSFNDFKG  332 (378)
Q Consensus       321 q~LdLS~N~Ls~  332 (378)
                      +.|+|.+|.|..
T Consensus       106 ~~l~l~~N~~~c  117 (347)
T 2ifg_A          106 QELVLSGNPLHC  117 (347)
T ss_dssp             CEEECCSSCCCC
T ss_pred             eEEEeeCCCccC
Confidence            999999999983

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.93  E-value=4.5e-12  Score=110.83  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=80.7

Q ss_pred             ceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC-CCCCC
Q 017047          260 RFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG-PGFEP  337 (378)
Q Consensus       260 rfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~-~~f~~  337 (378)
                      .+..+|..+..+.+|++|+|++|+|..++  .+..+++|+.|+|++|.|..+ ..+..+++|++|+|++|+|+. +.|..
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~  113 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEK  113 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCcccc
Confidence            34445556778899999999999999987  577779999999999999988 445667999999999999995 66778


Q ss_pred             CCCCCeeeccccccccccc
Q 017047          338 LENCKALQFCSNCILLETK  356 (378)
Q Consensus       338 L~nLk~LdLsnNrIs~i~~  356 (378)
                      +.+|+.|++.+|+|..+..
T Consensus       114 l~~L~~L~l~~N~i~~~~~  132 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGE  132 (198)
T ss_dssp             HHHSSEEEESEEECCCHHH
T ss_pred             CCCCCEEECCCCcCCchhH
Confidence            8899999999999986543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=2.6e-09  Score=115.79  Aligned_cols=102  Identities=21%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             cccccccCCCceeecCc--ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCC-CcEEeC
Q 017047          250 RAGTPQSKDSRFIVLPQ--VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTR-VKVLDL  325 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~--l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~Ltn-Lq~LdL  325 (378)
                      +...+++.+|+|..+|.  .+.++.+|+.|+|++|+|..++  .|..+++|+.|+|++|+|..+ ..|..+.+ |+.|+|
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEEC
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEEC
Confidence            56777788888888887  6777888888888888888776  577778888888888888877 56788888 888888


Q ss_pred             CCCCCC-C-CCCCCCC--CCCeeecccccccc
Q 017047          326 SFNDFK-G-PGFEPLE--NCKALQFCSNCILL  353 (378)
Q Consensus       326 S~N~Ls-~-~~f~~L~--nLk~LdLsnNrIs~  353 (378)
                      ++|.|+ . ..|..+.  +|+.|++.+|+|..
T Consensus       627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             cCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence            888887 3 3344443  37777777777753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.90  E-value=5.8e-09  Score=103.55  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=67.1

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      +....+...+++.+|+|..+|...   ..|++|+|++|+|..++  .|..+++|+.|+|++|+|.+++.+.  .+|++|+
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~  221 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIV  221 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEE
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCc--CcccEEE
Confidence            334444555666666666666432   35666666666666655  3556667777777777776663322  4677777


Q ss_pred             CCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047          325 LSFNDFK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       325 LS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |++|+|+ .+.|..+.+|+.|++.+|+|..+
T Consensus       222 l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          222 AGNNILEELPELQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             CCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             CcCCcCCcccccCCCCCCCEEECCCCcCCcc
Confidence            7777777 35677888888888888888754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=1.2e-09  Score=118.39  Aligned_cols=108  Identities=13%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             hhccccccccccCCCceee------------------cCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcC
Q 017047          245 LSGQRRAGTPQSKDSRFIV------------------LPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLR  304 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~------------------LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs  304 (378)
                      |....+...+++.+|+|..                  +|..+.  ++.+|++|+|++|++.+..+..|..+++|+.|+|+
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            3334445556666666665                  666655  66666666666666655544555555666666666


Q ss_pred             CCC-CCC--c-c-------cCCCCCCCcEEeCCCCCCC-CC---CCCCCCCCCeeeccccccc
Q 017047          305 DNM-LST--L-E-------GIEILTRVKVLDLSFNDFK-GP---GFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       305 ~Nk-Ls~--L-~-------~f~~LtnLq~LdLS~N~Ls-~~---~f~~L~nLk~LdLsnNrIs  352 (378)
                      +|+ |++  + .       .+..+++|++|+|++|+|+ .+   .|..|.+|+.|++.+|+|.
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence            665 554  2 2       2223335566666666555 22   2555555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.86  E-value=9.1e-09  Score=102.11  Aligned_cols=122  Identities=13%  Similarity=0.057  Sum_probs=87.2

Q ss_pred             cccccCCCCcccccccccchhcc-ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcC
Q 017047          226 VSSGLRNGSLSSSLDRSSNLSGQ-RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLR  304 (378)
Q Consensus       226 ~s~~l~~~~l~~~l~rL~sL~~~-~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs  304 (378)
                      +..+.+...|...-+++..++.. .+...+++.+|+|..+|. +..+..|++|+|++|+|.+++..    ..+|++|+|+
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~  223 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAG  223 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECC
T ss_pred             cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECc
Confidence            44444444444444444433221 256667788888888884 56788899999999999987642    2589999999


Q ss_pred             CCCCCCcccCCCCCCCcEEeCCCCCCCC-CCCCCCCCCCeeeccccccccc
Q 017047          305 DNMLSTLEGIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       305 ~NkLs~L~~f~~LtnLq~LdLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|.|..++.|..+++|++|+|++|+|+. +.  .+.+|+.|++.+|+|..+
T Consensus       224 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l  272 (454)
T 1jl5_A          224 NNILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDL  272 (454)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcccccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCccccc
Confidence            9999988778899999999999999884 32  236777888877777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.85  E-value=9.3e-09  Score=106.48  Aligned_cols=96  Identities=23%  Similarity=0.279  Sum_probs=72.4

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN  328 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N  328 (378)
                      .+...+++.+|+|..+|. +.+  +|+.|+|++|+|.+++.    .+++|+.|+|++|+|++++.  .+.+|++|+|++|
T Consensus       100 ~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          100 ASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNN  170 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred             CCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCC
Confidence            345567777888888777 333  78888888888888775    45788888888888888754  5788888888888


Q ss_pred             CCCC-CCCCCCCCCCeeecccccccccc
Q 017047          329 DFKG-PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       329 ~Ls~-~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +|+. +.|.  .+|+.|+|.+|+|+.+.
T Consensus       171 ~L~~lp~l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          171 QLTFLPELP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CCSCCCCCC--TTCCEEECCSSCCSSCC
T ss_pred             CCCCcchhh--CCCCEEECcCCCCCchh
Confidence            8884 4454  78888999988887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.84  E-value=8e-09  Score=106.96  Aligned_cols=94  Identities=18%  Similarity=0.200  Sum_probs=78.6

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND  329 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~  329 (378)
                      +...+++.+|+|..+|.   .+..|+.|+|++|+|+.++.    .+++|+.|+|++|+|++++.|.  .+|+.|+|++|+
T Consensus       121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNL  191 (571)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCC
Confidence            67778899999999998   57889999999999999875    4588999999999999995555  899999999999


Q ss_pred             CC-CCCCCCCCCC-------Ceeeccccccccc
Q 017047          330 FK-GPGFEPLENC-------KALQFCSNCILLE  354 (378)
Q Consensus       330 Ls-~~~f~~L~nL-------k~LdLsnNrIs~i  354 (378)
                      |+ .+.|..  +|       +.|+|.+|+|+.+
T Consensus       192 L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~l  222 (571)
T 3cvr_A          192 LESLPAVPV--RNHHSEETEIFFRCRENRITHI  222 (571)
T ss_dssp             CSSCCCCC----------CCEEEECCSSCCCCC
T ss_pred             CCchhhHHH--hhhcccccceEEecCCCcceec
Confidence            99 344543  77       9999999999865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.75  E-value=2.3e-08  Score=104.33  Aligned_cols=92  Identities=18%  Similarity=0.191  Sum_probs=66.8

Q ss_pred             cccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-C
Q 017047          254 PQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-G  332 (378)
Q Consensus       254 ~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~  332 (378)
                      +++.+|+|..+|..   +.+|+.|+|++|+|..++    ..+++|+.|+|++|+|..++.  .+.+|+.|+|++|+|+ .
T Consensus       206 L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~l  276 (622)
T 3g06_A          206 LWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL  276 (622)
T ss_dssp             EECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSC
T ss_pred             EECcCCcccccCCC---CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcC
Confidence            34455555555542   356778888888888776    234678888888888887755  6778888888888888 3


Q ss_pred             -CCCCCCCCCCeeeccccccccc
Q 017047          333 -PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       333 -~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                       ..|..|.+|+.|++.+|.|...
T Consensus       277 p~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          277 PESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CGGGGGSCTTCEEECCSCCCCHH
T ss_pred             CHHHhhccccCEEEecCCCCCCc
Confidence             5577888888888888888743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.71  E-value=2.9e-08  Score=103.57  Aligned_cols=95  Identities=20%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN  328 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N  328 (378)
                      .+...+++.+|+|..+|.   .+.+|++|||++|+|+.++.    .+++|++|+|++|.|..++.  .+.+|+.|+|++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCC
Confidence            466778888888888887   46789999999999998885    45889999999999988855  6788899999999


Q ss_pred             CCCC-CCCCCCCCCCeeeccccccccc
Q 017047          329 DFKG-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+. +.  .+.+|+.|++.+|.|..+
T Consensus       132 ~l~~lp~--~l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          132 QLTSLPV--LPPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CCSCCCC--CCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCC--CCCCCCEEECcCCcCCCc
Confidence            8884 32  247888888888888764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.70  E-value=2.8e-09  Score=98.43  Aligned_cols=103  Identities=21%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             cccccccccCCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCC-CCCC--c-ccCCCCCCCc
Q 017047          248 QRRAGTPQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-MLST--L-EGIEILTRVK  321 (378)
Q Consensus       248 ~~~~~T~dlrdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~N-kLs~--L-~~f~~LtnLq  321 (378)
                      ..+...+++.+|.|..  +|.....+.+|++|+|++|.|.......+..+++|++|+|++| .|+.  + ..+..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            3455667777777654  5665667778888888888877555445666788888888888 6664  4 3467788888


Q ss_pred             EEeCCCC-CCCC----CCCCCCC-CCCeeeccccc
Q 017047          322 VLDLSFN-DFKG----PGFEPLE-NCKALQFCSNC  350 (378)
Q Consensus       322 ~LdLS~N-~Ls~----~~f~~L~-nLk~LdLsnNr  350 (378)
                      +|+|++| .|+.    ..+..+. +|+.|++.+|.
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            8888888 7772    3456677 88888888884

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.68  E-value=1.4e-08  Score=96.31  Aligned_cols=55  Identities=18%  Similarity=0.144  Sum_probs=24.7

Q ss_pred             ccEEEcCCCCCCCc-ccCCCCCCCcEEeCC-CCCCC-C--CCCCCCCCCCeeeccccccc
Q 017047          298 LEFVYLRDNMLSTL-EGIEILTRVKVLDLS-FNDFK-G--PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       298 Le~LdLs~NkLs~L-~~f~~LtnLq~LdLS-~N~Ls-~--~~f~~L~nLk~LdLsnNrIs  352 (378)
                      |+.|+|++|+|..+ ..+..+.+|+.|+|. +|.|+ .  ..|..+.+|+.|++++|+|+
T Consensus       156 l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            44445555554444 333333444444443 23444 1  23444445555555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.65  E-value=1.8e-09  Score=102.75  Aligned_cols=83  Identities=19%  Similarity=0.161  Sum_probs=41.3

Q ss_pred             CCcceEEecCCcCC--ccCc--cccCCCCCccEEEcCCCCCC--C---c-c-cCCCCCCCcEEeCCCCCCC------C-C
Q 017047          272 GDDVRLDLRGHRVR--SLIA--SGLNLQPNLEFVYLRDNMLS--T---L-E-GIEILTRVKVLDLSFNDFK------G-P  333 (378)
Q Consensus       272 ssL~~LDLSgN~Ls--sL~~--s~f~lL~nLe~LdLs~NkLs--~---L-~-~f~~LtnLq~LdLS~N~Ls------~-~  333 (378)
                      ..|++|+|++|+|.  .++.  ..|..+++|+.|+|++|.|.  +   + + .|..+++|++|+|++|.|+      . .
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            44555555555554  1211  12233455555555555555  2   1 2 4555555666666666553      0 3


Q ss_pred             CCCCCCCCCeeeccccccccc
Q 017047          334 GFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       334 ~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      .|..+.+|+.|+|.+|.|...
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHH
T ss_pred             HHccCCCcCEEECCCCCCchh
Confidence            344555566666666655533

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.64  E-value=5.8e-09  Score=99.08  Aligned_cols=81  Identities=20%  Similarity=0.240  Sum_probs=36.0

Q ss_pred             ccccccCCCceeecCc-----ccccCC-CcceEEecCCcCCccCccccCCC-----CCccEEEcCCCCCCCc--c----c
Q 017047          251 AGTPQSKDSRFIVLPQ-----VEIKAG-DDVRLDLRGHRVRSLIASGLNLQ-----PNLEFVYLRDNMLSTL--E----G  313 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~-----l~~Kls-sL~~LDLSgN~LssL~~s~f~lL-----~nLe~LdLs~NkLs~L--~----~  313 (378)
                      ...+++.+|+|..++.     ....+. .|++|+|++|+|.......|..+     ++|++|+|++|.|...  .    .
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            4444555555544442     222333 45555555555554433322221     4455555555555433  1    1


Q ss_pred             CCCC-CCCcEEeCCCCCCC
Q 017047          314 IEIL-TRVKVLDLSFNDFK  331 (378)
Q Consensus       314 f~~L-tnLq~LdLS~N~Ls  331 (378)
                      |..+ .+|++|+|++|+|+
T Consensus       104 l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGG
T ss_pred             HHhCCCCccEEECcCCcCC
Confidence            2233 45555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.63  E-value=7.6e-09  Score=98.27  Aligned_cols=101  Identities=15%  Similarity=0.067  Sum_probs=77.8

Q ss_pred             ccCCCceee-cCcccccCCCcceEEecCCcCCccCc----cccCCCC-CccEEEcCCCCCCCc--ccCCCC-----CCCc
Q 017047          255 QSKDSRFIV-LPQVEIKAGDDVRLDLRGHRVRSLIA----SGLNLQP-NLEFVYLRDNMLSTL--EGIEIL-----TRVK  321 (378)
Q Consensus       255 dlrdnrfs~-LP~l~~KlssL~~LDLSgN~LssL~~----s~f~lL~-nLe~LdLs~NkLs~L--~~f~~L-----tnLq  321 (378)
                      ++.+|+|.. +|........|++|||++|.|..+..    ..|..++ +|++|+|++|.|...  ..|..+     .+|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            455666764 34433445569999999999999886    5666667 899999999999875  445443     9999


Q ss_pred             EEeCCCCCCCC---C----CCCCC-CCCCeeecccccccccc
Q 017047          322 VLDLSFNDFKG---P----GFEPL-ENCKALQFCSNCILLET  355 (378)
Q Consensus       322 ~LdLS~N~Ls~---~----~f~~L-~nLk~LdLsnNrIs~i~  355 (378)
                      +|+|++|+|+.   .    .|..+ .+|+.|++.+|.|....
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            99999999983   1    24555 79999999999997654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.61  E-value=5.7e-09  Score=99.37  Aligned_cols=104  Identities=20%  Similarity=0.161  Sum_probs=48.9

Q ss_pred             cccccccCCCcee------ecCcccccCCCcceEEecCCcCC-----ccCccccCCCCCccEEEcCCCCCCCc------c
Q 017047          250 RAGTPQSKDSRFI------VLPQVEIKAGDDVRLDLRGHRVR-----SLIASGLNLQPNLEFVYLRDNMLSTL------E  312 (378)
Q Consensus       250 ~~~T~dlrdnrfs------~LP~l~~KlssL~~LDLSgN~Ls-----sL~~s~f~lL~nLe~LdLs~NkLs~L------~  312 (378)
                      +..++++.+|+|.      .+|..+..+..|+.|+|++|.|.     .++. .+..+++|+.|+|++|.|...      .
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            4444555555544      22223334455555555555552     2222 333445555555555555443      2


Q ss_pred             cC--CCCCCCcEEeCCCCCCCC-------CCC-CCCCCCCeeeccccccccc
Q 017047          313 GI--EILTRVKVLDLSFNDFKG-------PGF-EPLENCKALQFCSNCILLE  354 (378)
Q Consensus       313 ~f--~~LtnLq~LdLS~N~Ls~-------~~f-~~L~nLk~LdLsnNrIs~i  354 (378)
                      .+  ..+++|++|+|++|.|+.       ..+ .+|.+|+.|++.+|.|+..
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            22  225555555555555552       112 3345555555555555533

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.58  E-value=6.5e-09  Score=96.00  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             hhccccccccccCCCcee-ecCcccccCCCcceEEecCC-cCCcc-CccccCCCCCccEEEcCCC-CCCC--c-ccCCCC
Q 017047          245 LSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGH-RVRSL-IASGLNLQPNLEFVYLRDN-MLST--L-EGIEIL  317 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN-~LssL-~~s~f~lL~nLe~LdLs~N-kLs~--L-~~f~~L  317 (378)
                      +....+...+++.+|++. .+|..+..+.+|++|+|++| .|+.. .+..+..+++|++|+|++| .|+.  + ..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            334556777888888876 35656667889999999999 68742 2233556789999999999 8885  3 557888


Q ss_pred             C-CCcEEeCCCCC--CC-C---CCCCCCCCCCeeeccccc-cc
Q 017047          318 T-RVKVLDLSFND--FK-G---PGFEPLENCKALQFCSNC-IL  352 (378)
Q Consensus       318 t-nLq~LdLS~N~--Ls-~---~~f~~L~nLk~LdLsnNr-Is  352 (378)
                      + +|++|+|++|.  ++ .   ..+..+.+|+.|++.+|. |+
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence            8 99999999994  54 1   445678899999999998 54

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=3e-07  Score=86.19  Aligned_cols=85  Identities=16%  Similarity=0.113  Sum_probs=72.5

Q ss_pred             CCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc-EEeCCCCCCC--C-CCCCCCCCCCee
Q 017047          271 AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK-VLDLSFNDFK--G-PGFEPLENCKAL  344 (378)
Q Consensus       271 lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq-~LdLS~N~Ls--~-~~f~~L~nLk~L  344 (378)
                      +..|+.|+|.+|+|+.|+...|..|.+|+.|+|.+| |..+  .+|.+|.+|+ .|+|.+ .++  + ..|..|.+|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999999999988998899999999988 7777  6789999999 999988 555  2 788999999999


Q ss_pred             ecccccccccccc
Q 017047          345 QFCSNCILLETKL  357 (378)
Q Consensus       345 dLsnNrIs~i~~L  357 (378)
                      ++.+|.|..+..-
T Consensus       303 ~l~~n~i~~I~~~  315 (329)
T 3sb4_A          303 LATGDKITTLGDE  315 (329)
T ss_dssp             EECSSCCCEECTT
T ss_pred             EeCCCccCccchh
Confidence            9988988877543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=3.2e-07  Score=85.96  Aligned_cols=96  Identities=7%  Similarity=0.028  Sum_probs=84.7

Q ss_pred             ccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCcc-EEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047          249 RRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLE-FVYLRDNMLSTL--EGIEILTRVKVLD  324 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe-~LdLs~NkLs~L--~~f~~LtnLq~Ld  324 (378)
                      .+...+++.+|++..+|...+ .+..|+.|+|.+| |..|....|..|.+|+ .|+|.+ .|..+  .+|.+|.+|+.|+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            466778888888999998765 6889999999998 9999999999999999 999998 78888  7899999999999


Q ss_pred             CCCCCCC--C-CCCCCCCCCCeeec
Q 017047          325 LSFNDFK--G-PGFEPLENCKALQF  346 (378)
Q Consensus       325 LS~N~Ls--~-~~f~~L~nLk~LdL  346 (378)
                      |.+|.|+  . ..|.++.+|+.|+.
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCccchhhhcCCcchhhhcc
Confidence            9999998  2 78999999999874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.42  E-value=3.9e-08  Score=93.37  Aligned_cols=61  Identities=23%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             CCCcceEEecCCcCCccCc--cccCCCCCccEEEcCCCCCCCcccCCCCC--CCcEEeCCCCCCC
Q 017047          271 AGDDVRLDLRGHRVRSLIA--SGLNLQPNLEFVYLRDNMLSTLEGIEILT--RVKVLDLSFNDFK  331 (378)
Q Consensus       271 lssL~~LDLSgN~LssL~~--s~f~lL~nLe~LdLs~NkLs~L~~f~~Lt--nLq~LdLS~N~Ls  331 (378)
                      +..|+.|+|++|+|.++..  ..+..+++|+.|+|++|+|.++..+..+.  +|+.|+|++|.|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence            3445555555555544432  11223344555555555554443333222  4445555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.39  E-value=3.6e-08  Score=94.73  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=57.6

Q ss_pred             ccccccccCCCcee-----ecCcccccCCCcceEEecCCcCCccCcc-ccCCCC----CccEEEcCCCCCCC-----c-c
Q 017047          249 RRAGTPQSKDSRFI-----VLPQVEIKAGDDVRLDLRGHRVRSLIAS-GLNLQP----NLEFVYLRDNMLST-----L-E  312 (378)
Q Consensus       249 ~~~~T~dlrdnrfs-----~LP~l~~KlssL~~LDLSgN~LssL~~s-~f~lL~----nLe~LdLs~NkLs~-----L-~  312 (378)
                      .+...+++.+|+|.     .++.....+.+|++|||++|+|...... .+..+.    +|++|+|++|.|..     + .
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            34445556666555     3455445556677777777766542211 112222    56777777776653     2 4


Q ss_pred             cCCCCCCCcEEeCCCCCCCC---C-----CCCCCCCCCeeecccccccc
Q 017047          313 GIEILTRVKVLDLSFNDFKG---P-----GFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       313 ~f~~LtnLq~LdLS~N~Ls~---~-----~f~~L~nLk~LdLsnNrIs~  353 (378)
                      .|..+++|++|+|++|.|..   .     .+..+.+|+.|++.+|+|+.
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            56666667777777766651   1     12234456666666666553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.38  E-value=3.4e-08  Score=94.84  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=59.9

Q ss_pred             cccccccCCCceee-----cCcccccCCCcceEEecCCcCCccC-----ccccCCCCCccEEEcCCCCCCC-----c-cc
Q 017047          250 RAGTPQSKDSRFIV-----LPQVEIKAGDDVRLDLRGHRVRSLI-----ASGLNLQPNLEFVYLRDNMLST-----L-EG  313 (378)
Q Consensus       250 ~~~T~dlrdnrfs~-----LP~l~~KlssL~~LDLSgN~LssL~-----~s~f~lL~nLe~LdLs~NkLs~-----L-~~  313 (378)
                      +...+++.+|+|..     ++.....+..|++|+|++|.|....     +..+..+++|+.|+|++|.|+.     + ..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            44455566666654     3444445667777777777766432     2223335677777777777765     3 34


Q ss_pred             CCCCCCCcEEeCCCCCCCC---C-----CCCCCCCCCeeecccccccc
Q 017047          314 IEILTRVKVLDLSFNDFKG---P-----GFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       314 f~~LtnLq~LdLS~N~Ls~---~-----~f~~L~nLk~LdLsnNrIs~  353 (378)
                      +..+++|++|+|++|.|..   .     ......+|+.|++.+|.|+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence            5556777777777777651   0     11122456666666666553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.28  E-value=2.6e-08  Score=97.06  Aligned_cols=104  Identities=12%  Similarity=0.044  Sum_probs=56.4

Q ss_pred             ccccccCCCceeecCccc------ccCCCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCCc------ccC
Q 017047          251 AGTPQSKDSRFIVLPQVE------IKAGDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLSTL------EGI  314 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~------~KlssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~L------~~f  314 (378)
                      ...+++.+|+|.......      .....|+.|+|++|.|......    .+..+++|++|+|++|.|...      ..+
T Consensus       128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L  207 (372)
T 3un9_A          128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL  207 (372)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred             ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence            345556666554322111      1234566677777766542211    123345677777777766532      345


Q ss_pred             CCCCCCcEEeCCCCCCCC-------CCCCCCCCCCeeeccccccccc
Q 017047          315 EILTRVKVLDLSFNDFKG-------PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       315 ~~LtnLq~LdLS~N~Ls~-------~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ..+.+|++|||++|.|+.       ..+..+.+|+.|+|.+|.|...
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            556667777777777661       2233445677777777776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.21  E-value=1.8e-07  Score=82.06  Aligned_cols=108  Identities=12%  Similarity=0.073  Sum_probs=72.7

Q ss_pred             hccccccccccCCC-ceee-----cCcccccCCCcceEEecCCcCCccC----ccccCCCCCccEEEcCCCCCCC-----
Q 017047          246 SGQRRAGTPQSKDS-RFIV-----LPQVEIKAGDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLST-----  310 (378)
Q Consensus       246 ~~~~~~~T~dlrdn-rfs~-----LP~l~~KlssL~~LDLSgN~LssL~----~s~f~lL~nLe~LdLs~NkLs~-----  310 (378)
                      ........+++.+| .|..     +.........|++|||++|+|..--    ...+...+.|++|+|++|.|..     
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            33444556677777 5543     3344445677888999988887421    1123334678889999988875     


Q ss_pred             c-ccCCCCCCCcEEeC--CCCCCCC-------CCCCCCCCCCeeecccccccc
Q 017047          311 L-EGIEILTRVKVLDL--SFNDFKG-------PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       311 L-~~f~~LtnLq~LdL--S~N~Ls~-------~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      + ..+.....|++|+|  ++|.|..       ..+.....|+.|+|.+|.|..
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            2 56777788889999  7888882       334455778888888888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.19  E-value=1.4e-07  Score=91.87  Aligned_cols=104  Identities=14%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             cccccccCCCceeec--CcccccCCCcceEEecCCcCCccCcccc-----CCCCCccEEEcCCCCCCCc------ccCCC
Q 017047          250 RAGTPQSKDSRFIVL--PQVEIKAGDDVRLDLRGHRVRSLIASGL-----NLQPNLEFVYLRDNMLSTL------EGIEI  316 (378)
Q Consensus       250 ~~~T~dlrdnrfs~L--P~l~~KlssL~~LDLSgN~LssL~~s~f-----~lL~nLe~LdLs~NkLs~L------~~f~~  316 (378)
                      +...+++.+|.|...  ......+.+|+.|||++|+|.......+     ....+|+.|+|++|.|...      ..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            455566666665431  1111123457777777777764332222     2246677777777777542      33456


Q ss_pred             CCCCcEEeCCCCCCCC-------CCCCCCCCCCeeecccccccc
Q 017047          317 LTRVKVLDLSFNDFKG-------PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       317 LtnLq~LdLS~N~Ls~-------~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      +++|++|||++|.|..       ..+..+.+|+.|+|.+|.|+.
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            6777777777777762       334555677777777777763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.07  E-value=3.9e-07  Score=86.54  Aligned_cols=77  Identities=22%  Similarity=0.259  Sum_probs=59.7

Q ss_pred             EEecCCcCCccCc---cccCCCCCccEEEcCCCCCCCcccC----CCCCCCcEEeCCCCCCCC-CCCCCCC--CCCeeec
Q 017047          277 LDLRGHRVRSLIA---SGLNLQPNLEFVYLRDNMLSTLEGI----EILTRVKVLDLSFNDFKG-PGFEPLE--NCKALQF  346 (378)
Q Consensus       277 LDLSgN~LssL~~---s~f~lL~nLe~LdLs~NkLs~L~~f----~~LtnLq~LdLS~N~Ls~-~~f~~L~--nLk~LdL  346 (378)
                      |++..|++..+..   .....+++|+.|+|++|+|.++.++    ..|++|+.|+|++|+|+. ..+..|.  +|+.|+|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L  227 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL  227 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEEC
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEc
Confidence            7788886554332   1223468999999999999998544    489999999999999994 4445454  9999999


Q ss_pred             ccccccc
Q 017047          347 CSNCILL  353 (378)
Q Consensus       347 snNrIs~  353 (378)
                      .+|.|..
T Consensus       228 ~~Npl~~  234 (267)
T 3rw6_A          228 DGNSLCD  234 (267)
T ss_dssp             TTSTTGG
T ss_pred             cCCcCcc
Confidence            9999975

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.92  E-value=2.3e-06  Score=74.99  Aligned_cols=87  Identities=13%  Similarity=0.083  Sum_probs=68.2

Q ss_pred             cccCCCcceEEecCC-cCCcc----CccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCCC----
Q 017047          268 EIKAGDDVRLDLRGH-RVRSL----IASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKG----  332 (378)
Q Consensus       268 ~~KlssL~~LDLSgN-~LssL----~~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls~----  332 (378)
                      ......|++|+|++| .|..-    ....+...++|++|+|++|.|..-      ..+.....|++|+|++|.|..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            345678999999999 98742    112345568999999999999752      456677899999999999992    


Q ss_pred             ---CCCCCCCCCCeeec--cccccccc
Q 017047          333 ---PGFEPLENCKALQF--CSNCILLE  354 (378)
Q Consensus       333 ---~~f~~L~nLk~LdL--snNrIs~i  354 (378)
                         ..+.....|+.|+|  .+|.|...
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHH
Confidence               45667788999999  88999754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.80  E-value=1.8e-06  Score=85.49  Aligned_cols=85  Identities=14%  Similarity=-0.008  Sum_probs=59.9

Q ss_pred             cCCCcceEEecCC--cCCccCccc-cCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCCC----CCCCCCC
Q 017047          270 KAGDDVRLDLRGH--RVRSLIASG-LNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFKG----PGFEPLE  339 (378)
Q Consensus       270 KlssL~~LDLSgN--~LssL~~s~-f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~  339 (378)
                      .+.+|++|+|+++  .+....... ...+++|+.|+|++|.|+..   ..+..|++|++|+|++|.|+.    ..+..+.
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  513 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP  513 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence            4667777777643  244322111 23368899999999998753   345788999999999999872    2335678


Q ss_pred             CCCeeeccccccccc
Q 017047          340 NCKALQFCSNCILLE  354 (378)
Q Consensus       340 nLk~LdLsnNrIs~i  354 (378)
                      +|+.|++.+|+|+..
T Consensus       514 ~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          514 SLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCCEEEEESCBCCTT
T ss_pred             ccCeeECcCCcCCHH
Confidence            999999999998754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.78  E-value=5.1e-05  Score=74.67  Aligned_cols=103  Identities=7%  Similarity=0.003  Sum_probs=60.1

Q ss_pred             chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCC-----------------
Q 017047          244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-----------------  306 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~N-----------------  306 (378)
                      .|..-.++..+++.+|++..++...+.+..|+.|+|. +.|..|....|..|.+|+.|+|.+|                 
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i  253 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV  253 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence            3444445555566666666666665556666666666 3366666666666666666666553                 


Q ss_pred             ----CCCCc--ccCCCCCCCcEEeCCCCCCC------C--CCCCCCCCCCeeecc
Q 017047          307 ----MLSTL--EGIEILTRVKVLDLSFNDFK------G--PGFEPLENCKALQFC  347 (378)
Q Consensus       307 ----kLs~L--~~f~~LtnLq~LdLS~N~Ls------~--~~f~~L~nLk~LdLs  347 (378)
                          .+..+  .+|.+|.+|+.|+|.+|.+.      .  ..|..|.+|+.|+|.
T Consensus       254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          254 KLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             EEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             EeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence                23333  34556666666666665543      1  456666666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.76  E-value=7.5e-05  Score=73.47  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=61.0

Q ss_pred             eeecCccc-ccCCCcceEEecCCcCC-----ccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC-
Q 017047          261 FIVLPQVE-IKAGDDVRLDLRGHRVR-----SLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK-  331 (378)
Q Consensus       261 fs~LP~l~-~KlssL~~LDLSgN~Ls-----sL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls-  331 (378)
                      +..++... ..|.+|+.|+|.+|.+.     .+....|..|.+|+.|+|.+ .|..+  .+|.+|.+|+.|+|..| ++ 
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            44443333 35667777777776665     56666677777777777773 46666  56777788888888555 44 


Q ss_pred             -C-CCCCCCCCCCeeeccccccccc
Q 017047          332 -G-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       332 -~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                       + ..|.++ +|+.|++.+|.+..+
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCccc
Confidence             2 667777 888888888776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.44  E-value=7.4e-06  Score=81.01  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=53.0

Q ss_pred             cCCCcceEEecCCcCCccCccccC-CCCCccEEEcCCCCCCCc--ccC-CCCCCCcEEeCCCCCCCC----CCCCCCCCC
Q 017047          270 KAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTL--EGI-EILTRVKVLDLSFNDFKG----PGFEPLENC  341 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~s~f~-lL~nLe~LdLs~NkLs~L--~~f-~~LtnLq~LdLS~N~Ls~----~~f~~L~nL  341 (378)
                      .+.+|+.|+|++ +|.......+. .+++|+.|+|++|.|+..  ..+ ..|++|++|+|++|.++.    ..+..+.+|
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            445566666655 44432211222 257788888888887543  333 567888888888888862    244557888


Q ss_pred             Ceeeccccccc
Q 017047          342 KALQFCSNCIL  352 (378)
Q Consensus       342 k~LdLsnNrIs  352 (378)
                      +.|++.+|.++
T Consensus       509 ~~L~l~~~~~~  519 (594)
T 2p1m_B          509 RSLWMSSCSVS  519 (594)
T ss_dssp             SEEEEESSCCB
T ss_pred             CEEeeeCCCCC
Confidence            88888888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.40  E-value=0.00011  Score=72.79  Aligned_cols=52  Identities=13%  Similarity=0.039  Sum_probs=27.0

Q ss_pred             CCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC----CCCCCCCCCCeeecc
Q 017047          296 PNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG----PGFEPLENCKALQFC  347 (378)
Q Consensus       296 ~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~nLk~LdLs  347 (378)
                      .+|+.|++.++....+ ..+..+++|++|+|++|.|+.    ..+..+.+|+.|++.
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            4444444444433333 334456667777777666552    223455556666555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.34  E-value=0.00032  Score=59.07  Aligned_cols=53  Identities=19%  Similarity=0.245  Sum_probs=40.3

Q ss_pred             eEEecCCcCC--ccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC
Q 017047          276 RLDLRGHRVR--SLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK  331 (378)
Q Consensus       276 ~LDLSgN~Ls--sL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls  331 (378)
                      .+|.+++.|+  .++..   ...+|+.|+|++|+|+.|  ..|..+.+|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5788888887  77742   235688888888888888  45677888888888888776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.20  E-value=7.4e-05  Score=67.25  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=66.9

Q ss_pred             ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCC--cccCCCC----CCCcEEeCCCC-CCC--C
Q 017047          263 VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LST--LEGIEIL----TRVKVLDLSFN-DFK--G  332 (378)
Q Consensus       263 ~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~--L~~f~~L----tnLq~LdLS~N-~Ls--~  332 (378)
                      .+|........|+.|||+++.|+..--..+..|++|+.|+|.+|. |+.  +..+..+    .+|+.|+|+++ +|+  +
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            456543334569999999999875433346778999999999995 553  2455553    47999999987 588  2


Q ss_pred             -CCCCCCCCCCeeeccccc-ccc
Q 017047          333 -PGFEPLENCKALQFCSNC-ILL  353 (378)
Q Consensus       333 -~~f~~L~nLk~LdLsnNr-Is~  353 (378)
                       ..+..+.+|+.|++.+.. |+.
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence             556788999999998864 553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.16  E-value=0.0017  Score=61.39  Aligned_cols=84  Identities=14%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCee
Q 017047          270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKAL  344 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~L  344 (378)
                      .+..|..+++.. .+..+....|..|.+|+.+.|.+|.|..+  .+|.+|.+|+.++|..| ++  + ..|.+|.+|+.+
T Consensus       261 ~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          261 NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI  338 (379)
T ss_dssp             TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred             eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence            466788888854 48888888888889999999999888888  67899999999999766 54  3 788899999999


Q ss_pred             eccccccccccc
Q 017047          345 QFCSNCILLETK  356 (378)
Q Consensus       345 dLsnNrIs~i~~  356 (378)
                      .+-.| ++.+..
T Consensus       339 ~ip~~-v~~I~~  349 (379)
T 4h09_A          339 SYPKS-ITLIES  349 (379)
T ss_dssp             CCCTT-CCEECT
T ss_pred             EECCc-cCEEch
Confidence            88654 554433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.10  E-value=0.0013  Score=63.14  Aligned_cols=81  Identities=6%  Similarity=0.134  Sum_probs=65.8

Q ss_pred             ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCe
Q 017047          269 IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKA  343 (378)
Q Consensus       269 ~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~  343 (378)
                      ..+..|+.+++. +.+..|....|..|.+|+.++|.+| ++.+  .+|.+|.+|+.+.|..| ++  + ..|.+|.+|+.
T Consensus       285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN  361 (394)
T ss_dssp             TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred             ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence            356778888885 6788888888988899999999865 6767  67899999999999766 44  2 77899999999


Q ss_pred             eeccccccc
Q 017047          344 LQFCSNCIL  352 (378)
Q Consensus       344 LdLsnNrIs  352 (378)
                      +++.+|...
T Consensus       362 i~~~~~~~~  370 (394)
T 4gt6_A          362 IEYSGSRSQ  370 (394)
T ss_dssp             EEESSCHHH
T ss_pred             EEECCceee
Confidence            999887653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.06  E-value=0.00058  Score=65.53  Aligned_cols=91  Identities=11%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             ceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCCCCCC
Q 017047          260 RFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKGPGFE  336 (378)
Q Consensus       260 rfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~~~f~  336 (378)
                      .+..+++..+ .+.+|+.++|..| ++.|....|..|.+|+.+.|.+| ++.+  .+|.+|.+|+.+++.+|......|.
T Consensus       298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~  375 (394)
T 4gt6_A          298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAIS  375 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCB
T ss_pred             cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhh
Confidence            3666666554 5789999999864 89999989999999999999766 7777  7899999999999999876655567


Q ss_pred             CCCCCCeeeccccccc
Q 017047          337 PLENCKALQFCSNCIL  352 (378)
Q Consensus       337 ~L~nLk~LdLsnNrIs  352 (378)
                      .+.+|+.|.+..|.+.
T Consensus       376 ~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          376 TDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CCCCC-----------
T ss_pred             ccCCCCEEEeCCCCEE
Confidence            7788999988877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.05  E-value=0.00047  Score=57.99  Aligned_cols=55  Identities=22%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             ccccCCCcee--ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCC
Q 017047          253 TPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS  309 (378)
Q Consensus       253 T~dlrdnrfs--~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs  309 (378)
                      .++..++++.  .+|..+  ..+|+.|||++|+|+.|+...|..+++|+.|+|.+|-+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5667788888  888643  346999999999999999999998999999999999774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.00  E-value=0.00013  Score=72.11  Aligned_cols=99  Identities=15%  Similarity=-0.013  Sum_probs=60.8

Q ss_pred             cccccccCCCceeecC-cccc-cCCCcceEEecCC-cCCc--cCccccCCCCCccEEEcCCCCCCCc--c---c-CCCCC
Q 017047          250 RAGTPQSKDSRFIVLP-QVEI-KAGDDVRLDLRGH-RVRS--LIASGLNLQPNLEFVYLRDNMLSTL--E---G-IEILT  318 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP-~l~~-KlssL~~LDLSgN-~Lss--L~~s~f~lL~nLe~LdLs~NkLs~L--~---~-f~~Lt  318 (378)
                      +...+++.+|.|.... ..+. .+.+|+.|+|.+| .+..  +.. .+..+++|++|+|.+|.|...  .   . ...++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            3444556666544321 1122 4677888888887 5543  221 233467888888888887653  2   2 23677


Q ss_pred             CCcEEeCCCCC--CCC----CCCCCCCCCCeeecccc
Q 017047          319 RVKVLDLSFND--FKG----PGFEPLENCKALQFCSN  349 (378)
Q Consensus       319 nLq~LdLS~N~--Ls~----~~f~~L~nLk~LdLsnN  349 (378)
                      +|+.|+|++|.  +..    ..+..+.+|+.|++.+|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            88888888886  331    11234678888888877

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.95  E-value=0.00033  Score=68.44  Aligned_cols=83  Identities=14%  Similarity=0.144  Sum_probs=57.2

Q ss_pred             cCCCcceEEecC--Cc------CCccCcccc-CCCCCccEEEcCCCCCCCc-----ccCCCCCCCcEEeCCCCCCCC---
Q 017047          270 KAGDDVRLDLRG--HR------VRSLIASGL-NLQPNLEFVYLRDNMLSTL-----EGIEILTRVKVLDLSFNDFKG---  332 (378)
Q Consensus       270 KlssL~~LDLSg--N~------LssL~~s~f-~lL~nLe~LdLs~NkLs~L-----~~f~~LtnLq~LdLS~N~Ls~---  332 (378)
                      ++..|+.|+|+.  |.      +..+..... ..+++|+.|+|.+|.|...     .....+++|++|||++|.|..   
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            567788898863  22      212211111 2368899999999988642     122467899999999999982   


Q ss_pred             ----CCCCCCCCCCeeeccccccc
Q 017047          333 ----PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       333 ----~~f~~L~nLk~LdLsnNrIs  352 (378)
                          ..+.+|.+|+.|++.+|.|+
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHhhcccCCcceEEECCCCcCC
Confidence                33456789999999999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.76  E-value=0.00016  Score=70.66  Aligned_cols=99  Identities=10%  Similarity=0.092  Sum_probs=63.7

Q ss_pred             ccccCCCceeecCcccccCCCcceEEecCCcCCccCcccc--CCCCCccEEEcCC--CC------CCCc-ccC--CCCCC
Q 017047          253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGL--NLQPNLEFVYLRD--NM------LSTL-EGI--EILTR  319 (378)
Q Consensus       253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f--~lL~nLe~LdLs~--Nk------Ls~L-~~f--~~Ltn  319 (378)
                      .+.+++|....++.  ..+.+|+.|+|..|.|..-....+  ..+++|+.|+|+.  |.      +..+ ..+  ..+++
T Consensus       176 ~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~  253 (362)
T 2ra8_A          176 NLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN  253 (362)
T ss_dssp             EEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTT
T ss_pred             EEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCC
Confidence            34444442233444  246789999999888764221122  2468999999853  22      2222 223  35789


Q ss_pred             CcEEeCCCCCCCC------CCCCCCCCCCeeecccccccc
Q 017047          320 VKVLDLSFNDFKG------PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       320 Lq~LdLS~N~Ls~------~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      |++|+|.+|+|..      .....+++|+.|+|+.|.|..
T Consensus       254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            9999999999872      112457899999999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.72  E-value=0.0031  Score=60.45  Aligned_cols=77  Identities=12%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCee
Q 017047          270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKAL  344 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~L  344 (378)
                      .+..|..+.+..+ ++.|....|..|.+|+.++|.++ ++.+  .+|.+|.+|+.++|..| ++  + ..|.+|.+|+.+
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence            5677888888654 88888888888888999998755 7777  67888999999999877 55  3 778888899998


Q ss_pred             ecccc
Q 017047          345 QFCSN  349 (378)
Q Consensus       345 dLsnN  349 (378)
                      ++..|
T Consensus       372 ~lp~~  376 (394)
T 4fs7_A          372 ELPKR  376 (394)
T ss_dssp             EEEGG
T ss_pred             EECCC
Confidence            88654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.63  E-value=0.0087  Score=56.51  Aligned_cols=85  Identities=7%  Similarity=-0.059  Sum_probs=69.3

Q ss_pred             ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCe
Q 017047          269 IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKA  343 (378)
Q Consensus       269 ~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~  343 (378)
                      ..+..|..++|..+ ++.+....|..+..|+.+.+.++ +..+  ..|.+|.+|+.++|.+|.++  + ..|.++.+|+.
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            35677889999765 88888888988899999999765 6666  67899999999999999887  3 78999999999


Q ss_pred             eeccccccccccc
Q 017047          344 LQFCSNCILLETK  356 (378)
Q Consensus       344 LdLsnNrIs~i~~  356 (378)
                      +.|.++ ++.+..
T Consensus       315 i~lp~~-l~~I~~  326 (379)
T 4h09_A          315 VTLPTA-LKTIQV  326 (379)
T ss_dssp             EECCTT-CCEECT
T ss_pred             EEcCcc-ccEEHH
Confidence            998755 554433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.42  E-value=0.0016  Score=59.56  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=45.6

Q ss_pred             CCCcceEEecCC-cCCcc----CccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCC--C-----
Q 017047          271 AGDDVRLDLRGH-RVRSL----IASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFK--G-----  332 (378)
Q Consensus       271 lssL~~LDLSgN-~LssL----~~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls--~-----  332 (378)
                      ...|+.|+|++| +|..-    ....+..-..|+.|+|.+|+|...      ..+..-+.|+.|+|++|+|.  +     
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            455777777764 66521    111223335677777777777532      34445566777777777777  2     


Q ss_pred             CCCCCCCCCCeeecccc
Q 017047          333 PGFEPLENCKALQFCSN  349 (378)
Q Consensus       333 ~~f~~L~nLk~LdLsnN  349 (378)
                      ..+..-..|+.|+|.+|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            33444445777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.20  E-value=0.003  Score=60.53  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             cccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047          254 PQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       254 ~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L  330 (378)
                      +.+.++ +..+.+..+ .+..|+.++|.. .++.|....|..|.+|+.+.|..| +..+  .+|.+|.+|+.++|..|--
T Consensus       302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~  378 (394)
T 4fs7_A          302 VKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLE  378 (394)
T ss_dssp             EEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGG
T ss_pred             cccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCE
Confidence            333333 555555443 678999999974 499999999999999999999887 8877  7899999999999976532


Q ss_pred             C-CCCCCCCCCCCee
Q 017047          331 K-GPGFEPLENCKAL  344 (378)
Q Consensus       331 s-~~~f~~L~nLk~L  344 (378)
                      . ...|.++.+|+.+
T Consensus       379 ~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          379 QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGGGBCTTCEEEEE
T ss_pred             EhhheecCCCCCcEE
Confidence            2 2567777766654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.57  E-value=0.0036  Score=57.15  Aligned_cols=102  Identities=11%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             ccccccCCC-ceee-----cCcccccCCCcceEEecCCcCCccCccc----cCCCCCccEEEcCCCCCCCc------ccC
Q 017047          251 AGTPQSKDS-RFIV-----LPQVEIKAGDDVRLDLRGHRVRSLIASG----LNLQPNLEFVYLRDNMLSTL------EGI  314 (378)
Q Consensus       251 ~~T~dlrdn-rfs~-----LP~l~~KlssL~~LDLSgN~LssL~~s~----f~lL~nLe~LdLs~NkLs~L------~~f  314 (378)
                      ...+++.+| +|..     |-........|+.|+|++|+|..--...    +..-..|+.|+|.+|+|..-      +++
T Consensus        43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL  122 (197)
T 1pgv_A           43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST  122 (197)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred             ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence            334556553 4432     3333345678999999999998443222    22237899999999999753      567


Q ss_pred             CCCCCCcEEeCCCCC---CC--C-----CCCCCCCCCCeeeccccccc
Q 017047          315 EILTRVKVLDLSFND---FK--G-----PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       315 ~~LtnLq~LdLS~N~---Ls--~-----~~f~~L~nLk~LdLsnNrIs  352 (378)
                      ..-..|++|+|++|.   |.  +     ..+..-..|..|++..|.+.
T Consensus       123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            667779999999764   34  1     23344467899999887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=93.57  E-value=0.012  Score=52.89  Aligned_cols=58  Identities=12%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC-CCC---CCCCCC----CCCCeeeccccc-ccc
Q 017047          296 PNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND-FKG---PGFEPL----ENCKALQFCSNC-ILL  353 (378)
Q Consensus       296 ~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~-Ls~---~~f~~L----~nLk~LdLsnNr-Is~  353 (378)
                      -.|+.|||+++.|+..  ..+..|++|+.|+|+++. |+.   ..+..+    .+|+.|+|.++. |+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            4799999999998654  778899999999999985 872   444443    379999999874 763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 8e-09
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L L  + +  +     +L   L+ ++  +N +S +  +  LT +  L    N        
Sbjct: 312 LTLYFNNISDISPVS-SL-TKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS--DLT 367

Query: 337 PLENCKALQ 345
           PL N   + 
Sbjct: 368 PLANLTRIT 376

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 6e-07
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 275 VRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
           ++  L    V   ++ + L+    +  +      + +++G+E L  +  ++ S N     
Sbjct: 25  MKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-- 79

Query: 334 GFEPLENCKALQFCSNC 350
              PL+N   L      
Sbjct: 80  DITPLKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN 328
           RL    ++V  +  S L    N+ ++    N +S L  +  LTR+  L L+  
Sbjct: 333 RLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 296 PNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQF 346
            NL ++ L  N +S +  +  LT+++ L  + N         L N   + +
Sbjct: 307 KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV--SSLANLTNINW 355

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 293 NLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCIL 352
            +  NL+ + L  N L  +  +  LT +  LDL+ N        PL     L       L
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTELK---L 270

Query: 353 LETKLHLLEASQSFPIWSF 371
              ++  +         + 
Sbjct: 271 GANQISNISPLAGLTALTN 289

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDF 330
            L      ++S+   G+    NL  +   +N L+ +  ++ LT++  + ++ N  
Sbjct: 48  TLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 5e-07
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 277 LDLRGHRVRSLIASGL--NLQPNLEFVYLRDNMLSTLEGIEIL-------TRVKVLDLSF 327
           LD++   +     + L   LQ   + V L D  L T    + +         +  L+L  
Sbjct: 7   LDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRS 64

Query: 328 NDFKGPGFEPLENCKALQFCSNCILLETKLHL 359
           N+    G   +   + LQ   +C +   KL L
Sbjct: 65  NELGDVGVHCV--LQGLQ-TPSCKI--QKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 292 LNLQPNLEFVYLRDNMLST------LEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQ 345
                 L  ++L D  +S          +     ++ LDLS N     G   L   ++++
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL--VESVR 422

Query: 346 FCSNCILLETKLHL 359
                 LLE  L L
Sbjct: 423 --QPGCLLEQ-LVL 433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 24/95 (25%)

Query: 277 LDLRGHRVR----SLIASGLNLQPNLEFVYLRDNMLSTLEGIEIL--------TRVKVLD 324
           L L    V     S +A+ L    +L  + L +N L    GI  L          ++ L 
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVESVRQPGCLLEQLV 432

Query: 325 LSFNDFKGPGFEPLENCKALQFCSNCILLETKLHL 359
           L    +        E    LQ      L + K  L
Sbjct: 433 LYDIYWSE------EMEDRLQ-----ALEKDKPSL 456

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 6e-06
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 282 HRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENC 341
              +    + L     L  +   DN +S +  +  L  +  + L  N        PL N 
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS--DVSPLANT 216

Query: 342 KALQF 346
             L  
Sbjct: 217 SNLFI 221

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDF 330
           +++      V   +    +L   +  +      ++T+EG++ L  +  L+L  N  
Sbjct: 22  IKIAAGKSNVTDTVTQA-DL-DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 8/31 (25%), Positives = 19/31 (61%)

Query: 296 PNLEFVYLRDNMLSTLEGIEILTRVKVLDLS 326
           PNL  V+L++N +S +  +   + + ++ L+
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 9e-05
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           L++  +++  L A      P LE +    N L+ +   E+   +K L + +N  +     
Sbjct: 289 LNVSNNKLIELPAL----PPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDI 342

Query: 337 PLENCKALQF 346
           P E+ + L+ 
Sbjct: 343 P-ESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 296 PNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQFCSNCI 351
           P+LE + + +N L  L    +  R++ L  SFN     P     +N K L    N +
Sbjct: 284 PSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPL 336

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 296 PNLEFVYLRDNMLSTLEGIEILTRVKVLDLS 326
             L+ +YL  N +S L  +  L  + VL+L 
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 275 VRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
           ++ +L+   V   +  + LN   +++ +   ++ + +++GI+ L  V  L L+ N     
Sbjct: 27  IKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 83

Query: 334 GFEPLENCKALQFCSNC 350
                       F    
Sbjct: 84  KPLANLKNLGWLFLDEN 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
           LDLRG+++  +   G  L    + +   DN +  L+G  +L R+K L ++ N        
Sbjct: 23  LDLRGYKIPVIENLGATL-DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI--- 78

Query: 337 PLENCKALQFCSNCILLETKLHLLEASQSFPIWSFS 372
                +AL   +  IL    L  L            
Sbjct: 79  GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 114

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 295 QPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG--PGFEPLENCKALQFCSNC 350
             NL  + LR+N +     +G+  L  +  L++SFN+  G  P    L+      + +N 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Query: 351 IL 352
            L
Sbjct: 303 CL 304

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 297 NLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNCILLE 354
           +L+   +      ++   +     VK + LS N         L   + +    +  + E
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL--SENIASKKDLEIAE 65

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 302 YLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQFCSNC 350
           +L    L+ L  +E L  V  LDLS N  +      L   + L+     
Sbjct: 4   HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQAS 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.24
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.23
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.23
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.16
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.13
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.08
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.0
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.89
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.87
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.91
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.12

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.3e-14  Score=119.58  Aligned_cols=102  Identities=23%  Similarity=0.214  Sum_probs=90.3

Q ss_pred             ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-
Q 017047          253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-  331 (378)
Q Consensus       253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-  331 (378)
                      ++|+.+|+|..++. ...+..|++|||++|+|+.+++ .|..+++|+.|+|++|+|+.+++|..|++|++|+|++|+|+ 
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCccccccccCeEECCCCccCC
Confidence            57889999999986 5678899999999999999976 46778999999999999999999999999999999999998 


Q ss_pred             C---CCCCCCCCCCeeeccccccccccc
Q 017047          332 G---PGFEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       332 ~---~~f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      .   ..+..+.+|+.|++.+|.|+....
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            3   346788899999999999986643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=2.4e-13  Score=117.33  Aligned_cols=108  Identities=17%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             cccccccCCCceee-cCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047          250 RAGTPQSKDSRFIV-LPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL  325 (378)
Q Consensus       250 ~~~T~dlrdnrfs~-LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL  325 (378)
                      +...+++.+|+|.. ++... ..+.+|+.|+|++|+|..++...|..++.|++|+|++|+|..+  ..|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            45668889999964 44443 4788999999999999999999999889999999999999998  56899999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCeeecccccccccccc
Q 017047          326 SFNDFKG---PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      ++|+|+.   ..|..+.+|++|+|.+|.|.....+
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCccccccCHHHhcCCcccccccccccccccccch
Confidence            9999993   6788999999999999999865443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=1.8e-13  Score=118.03  Aligned_cols=101  Identities=20%  Similarity=0.173  Sum_probs=89.6

Q ss_pred             ccccCCCceeecCcccccCCCcceEEecCCcCCc-cCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC
Q 017047          253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRS-LIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND  329 (378)
Q Consensus       253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~Lss-L~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~  329 (378)
                      +.+..+++|..+|..+  ..++++|+|++|+|+. +....|..+++|+.|+|.+|.|..+  ..|..+.+|++|+|++|+
T Consensus        12 ~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            5678899999999865  3679999999999986 6666788889999999999999988  688999999999999999


Q ss_pred             CCC---CCCCCCCCCCeeecccccccccc
Q 017047          330 FKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       330 Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |+.   ..|.+|.+|+.|+|.+|+|+.+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccC
Confidence            993   67999999999999999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-13  Score=117.57  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=94.0

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-cc-CCCCCCCcE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EG-IEILTRVKV  322 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~-f~~LtnLq~  322 (378)
                      +.+--+...+|+++|+|..++.....+.+|+.|||++|+|..++  .|..+++|+.|+|++|+|..+ ++ +..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            44445567899999999999987778899999999999999996  477889999999999999998 44 567999999


Q ss_pred             EeCCCCCCCC----CCCCCCCCCCeeecccccccccc
Q 017047          323 LDLSFNDFKG----PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       323 LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |+|++|+|+.    ..+..|++|+.|++.+|.|....
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ceeccccccccccccccccccccchhhcCCCcccccc
Confidence            9999999983    45778899999999999997653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=116.88  Aligned_cols=103  Identities=18%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             cccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSF  327 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~  327 (378)
                      +...+++.+|+|..+|... ..+.+|++|+|++|+|+.++.  +..+++|+.|+|++|+|..+ ..+..+++|++|+|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            3445566666666665432 355666666666666666553  34456666666666666655 5556666666666666


Q ss_pred             CCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          328 NDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |.+..   ..+..+.+|..|++.+|.|..+
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l  139 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTL  139 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             cccceeecccccccccccccccccccccee
Confidence            66652   4455566666666666666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.2e-12  Score=108.54  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             ccccCCCceeecCcccccCCCcceEEecCC-cCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC
Q 017047          253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGH-RVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND  329 (378)
Q Consensus       253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN-~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~  329 (378)
                      +++..++++..+|..+..+.+|++|+|.+| .|+.++...|..+++|+.|+|++|+|+.+  .+|..+++|++|||++|+
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            345667778888887777889999999876 59999998899999999999999999999  568999999999999999


Q ss_pred             CCC---CCCCCCCCCCeeecccccccccccc
Q 017047          330 FKG---PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       330 Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      |+.   ..|..+ +|+.|+|.+|.|.....+
T Consensus        92 l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          92 LESLSWKTVQGL-SLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSCCCSTTTCSC-CCCEEECCSSCCCCCGGG
T ss_pred             CcccChhhhccc-cccccccCCCcccCCchH
Confidence            993   344444 799999999999754443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=3.3e-12  Score=104.80  Aligned_cols=81  Identities=22%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             ceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCC-CCCCCCCCCCCeeeccccccc
Q 017047          275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFK-GPGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       275 ~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs  352 (378)
                      +.|||++|+|+.++.  +..+.+|++|+|++|+|..+ +.|..+++|++|+|++|+|+ .++|..|.+|+.|++.+|+|.
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            479999999999874  77789999999999999999 67999999999999999999 477999999999999999998


Q ss_pred             ccccc
Q 017047          353 LETKL  357 (378)
Q Consensus       353 ~i~~L  357 (378)
                      .+..+
T Consensus        79 ~~~~~   83 (124)
T d1dcea3          79 QSAAI   83 (124)
T ss_dssp             SSSTT
T ss_pred             CCCCc
Confidence            76543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=1.6e-11  Score=106.27  Aligned_cols=102  Identities=17%  Similarity=0.155  Sum_probs=57.2

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND  329 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~  329 (378)
                      +...+++.+|.+..++. ...+..|+.|++++|.+..+..  +..+++|+.|++++|+|..++.+..+.+|+.|++.+|+
T Consensus        85 ~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2          85 KLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccc--cchhhhhHHhhhhhhhhccccccccccccccccccccc
Confidence            34444444554444443 2344455555555555554432  44455666666666666655556666666666666666


Q ss_pred             CCC-CCCCCCCCCCeeeccccccccc
Q 017047          330 FKG-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       330 Ls~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+. ..|.+|.+|+.|++.+|+|+.+
T Consensus       162 l~~l~~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         162 VTDLKPLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCccccCCCCCCEEECCCCCCCCC
Confidence            663 4466666666666666666544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.2e-12  Score=107.87  Aligned_cols=88  Identities=24%  Similarity=0.298  Sum_probs=76.1

Q ss_pred             ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCCC--CC-CCCCCCCCeee
Q 017047          269 IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG--PG-FEPLENCKALQ  345 (378)
Q Consensus       269 ~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls~--~~-f~~L~nLk~Ld  345 (378)
                      .++..|++|||++|+|+.++. .+..+.+|+.|+|++|+|..+++|..|++|++|+|++|+|+.  .. +..+.+|+.|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            355679999999999999974 456679999999999999999999999999999999999993  33 56789999999


Q ss_pred             cccccccccccc
Q 017047          346 FCSNCILLETKL  357 (378)
Q Consensus       346 LsnNrIs~i~~L  357 (378)
                      +.+|+|..+..+
T Consensus        94 L~~N~i~~~~~l  105 (162)
T d1a9na_          94 LTNNSLVELGDL  105 (162)
T ss_dssp             CCSCCCCCGGGG
T ss_pred             eccccccccccc
Confidence            999999876544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.1e-11  Score=108.36  Aligned_cols=104  Identities=23%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             ccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047          251 AGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF  327 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~  327 (378)
                      ...+++.+|++..++.... .+..+..|++.+|.|..+++..+..+.+|+.|++.+|+|+.+  ..|..+.+|++|||++
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence            3344455555555444333 345566666666666666665565566677777777776666  3466667777777777


Q ss_pred             CCCC-C-CCCCCCCCCCeeeccccccccc
Q 017047          328 NDFK-G-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       328 N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |+|+ . .++..+.+|+.|+|.+|.+..-
T Consensus       182 N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         182 NSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            7766 3 4555666677777777766543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=4.3e-11  Score=103.47  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=97.8

Q ss_pred             cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcE
Q 017047          243 SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKV  322 (378)
Q Consensus       243 ~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~  322 (378)
                      ..+....+..++++.+|+|..+++ +..+.+|++|++++|.+..++.  +..++.|+.|++.+|.+..+..+..+++|+.
T Consensus        56 ~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  132 (199)
T d2omxa2          56 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNR  132 (199)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             cccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc--cccccccccccccccccccccccchhhhhHH
Confidence            345555677889999999999886 5678899999999999999874  7778999999999999999888999999999


Q ss_pred             EeCCCCCCCC-CCCCCCCCCCeeecccccccccccc
Q 017047          323 LDLSFNDFKG-PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       323 LdLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      |++++|+|.. ..+..+.+|+.|++.+|+|+.+..+
T Consensus       133 L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l  168 (199)
T d2omxa2         133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL  168 (199)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGG
T ss_pred             hhhhhhhhcccccccccccccccccccccccCCccc
Confidence            9999999994 6788999999999999999876544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.4e-11  Score=110.84  Aligned_cols=111  Identities=20%  Similarity=0.260  Sum_probs=91.9

Q ss_pred             ccccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEE
Q 017047          247 GQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVL  323 (378)
Q Consensus       247 ~~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~L  323 (378)
                      ...+..++++.+|.|..+|...+ .+..|+.|+|++|+|..+++..|..+++|+.|+|.+|+|..+  ..|..+.+|++|
T Consensus       127 ~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence            34455677888888988876554 567899999999999999888888889999999999999887  678899999999


Q ss_pred             eCCCCCCCC---CCCCCCCCCCeeecccccccccccc
Q 017047          324 DLSFNDFKG---PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       324 dLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      |+++|+|..   ..|..+.+|++|++.+|.+.....+
T Consensus       207 ~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            999999983   5678888999999999998865443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=3.6e-11  Score=105.02  Aligned_cols=102  Identities=21%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCC
Q 017047          251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~L  330 (378)
                      ...+++.+|+|..+|. ...+..|+.|++.+|.+..+.  .+..++.|+.+++.+|.|..+..+..+++|++|++++|+|
T Consensus        92 L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2          92 LGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             CCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence            3344444454544442 233444555555555554443  2333455555555555555555556677777777777777


Q ss_pred             CC-CCCCCCCCCCeeecccccccccc
Q 017047          331 KG-PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       331 s~-~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +. ..|..|.+|+.|++.+|+|+.+.
T Consensus       169 ~~i~~l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         169 SDIVPLAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred             cccccccCCCCCCEEECCCCCCCCCh
Confidence            73 55777778888888888776553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=3.6e-11  Score=109.47  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=77.1

Q ss_pred             hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047          246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL  325 (378)
Q Consensus       246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL  325 (378)
                      ....+..++++.++++..++. ...+..+..|++.+|+|..+..  +..+.+|+.|+|++|+|.++..|..+++|++|+|
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L  336 (384)
T d2omza2         260 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF  336 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred             cccccCCEeeccCcccCCCCc-cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcccccCCCCCEEEC
Confidence            334455666777777777665 3346667778888888877653  5556778888888888877766777888888888


Q ss_pred             CCCCCCC-CCCCCCCCCCeeeccccccccccc
Q 017047          326 SFNDFKG-PGFEPLENCKALQFCSNCILLETK  356 (378)
Q Consensus       326 S~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~  356 (378)
                      ++|+|+. ..|..|.+|+.|++.+|+|+.+..
T Consensus       337 ~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         337 ANNKVSDVSSLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCCCChhHcCCCCCCEEECCCCcCCCChh
Confidence            8888773 567777788888888888776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=5.2e-11  Score=103.97  Aligned_cols=111  Identities=17%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEE
Q 017047          244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVL  323 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~L  323 (378)
                      .+....+...+++.+|+|..++. ...+.+|++|+|++|+|+.++.  +..+++|+.|++.+|.+..++.+..+.+|+.+
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l  139 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESL  139 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred             hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence            34445566778889999988885 4568889999999999998873  67779999999999999888889999999999


Q ss_pred             eCCCCCCCC-CCCCCCCCCCeeecccccccccccc
Q 017047          324 DLSFNDFKG-PGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       324 dLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      ++++|.|+. ..+..|.+|+.|++.+|+|..+..+
T Consensus       140 ~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l  174 (210)
T d1h6ta2         140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL  174 (210)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            999999984 6677889999999999999866543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9e-11  Score=105.54  Aligned_cols=111  Identities=18%  Similarity=0.136  Sum_probs=95.7

Q ss_pred             hhccccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq  321 (378)
                      |....+..++++.+|++..++.... ....|+.|++.+|+|+.+++..|..+.+|+.|+|++|+|..+  ..|.++++|+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            4444566677888888887766544 577899999999999999988888889999999999999988  6789999999


Q ss_pred             EEeCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047          322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      +|+|++|+|..   ..|..+.+|++|++.+|+|....
T Consensus       181 ~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            99999999993   77899999999999999998664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=1.3e-10  Score=105.63  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047          249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN  328 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N  328 (378)
                      .+...+++.+|++..++. +..+.+|+.|++++|++..+++  +..+..++.+++.+|.|.++..+..+.+|+.|+|++|
T Consensus       241 ~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n  317 (384)
T d2omza2         241 TNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN  317 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred             cccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCc--cccccccccccccccccccccccchhcccCeEECCCC
Confidence            344444555555555443 2334455555555555555442  3334555555555555555544555555555555555


Q ss_pred             CCCC-CCCCCCCCCCeeeccccccccc
Q 017047          329 DFKG-PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls~-~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+. ..|..|.+|+.|++.+|+|+.+
T Consensus       318 ~l~~l~~l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         318 NISDISPVSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             CCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCCcccccCCCCCEEECCCCCCCCC
Confidence            5552 3345555555555555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=4e-10  Score=101.53  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=72.9

Q ss_pred             ccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCC
Q 017047          251 AGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFN  328 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N  328 (378)
                      ...+++.+|.+...+.. ...+..++.|++++|+|..+++..|..+++|++|+|++|.|+.+ .+|..+++|++|+|++|
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC
Confidence            33445566655554433 34566778888888888888777777778888888888888877 67778888888888888


Q ss_pred             CCC-C--CC------CCCCCCCCeeeccccccccc
Q 017047          329 DFK-G--PG------FEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       329 ~Ls-~--~~------f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|+ .  ..      +..+.+|+.|+|.+|.|..+
T Consensus       253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             ccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            877 2  22      23456678888888887644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=2.9e-10  Score=102.45  Aligned_cols=109  Identities=18%  Similarity=0.197  Sum_probs=93.3

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV  322 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~  322 (378)
                      +....+...+++.+|++..+|...  +.+|+.|+|.+|.+....+..|..+..++.|++++|.|..+  ..|..+++|++
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            333344556677888888888654  56899999999999999888888889999999999999998  56789999999


Q ss_pred             EeCCCCCCC-C-CCCCCCCCCCeeecccccccccc
Q 017047          323 LDLSFNDFK-G-PGFEPLENCKALQFCSNCILLET  355 (378)
Q Consensus       323 LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i~  355 (378)
                      |+|++|.|+ . .+|..+.+|+.|++.+|+|+.+.
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             eecccccccccccccccccCCCEEECCCCccCccC
Confidence            999999999 4 67899999999999999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.00  E-value=2.1e-12  Score=113.54  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=92.4

Q ss_pred             chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEE
Q 017047          244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVL  323 (378)
Q Consensus       244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~L  323 (378)
                      .|....+...+++.+|+|..++. +..+.+|+.|+|++|+|+.++.. +..++.|+.|+|.+|+|+.++++..|++|++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             HHhcccccceeECcccCCCCccc-ccCCccccChhhccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            45556677788999999999874 55788999999999999998742 33446899999999999999889999999999


Q ss_pred             eCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFKG----PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      +|++|+|+.    ..|..|.+|+.|++.+|.|...
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccC
Confidence            999999983    4578899999999999998644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=1.3e-09  Score=94.96  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=74.7

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      +....+...+++.++.+..++. ......+..|++.++.+.....  +..+++|+.|++.+|.+.....|..|++|+.||
T Consensus       103 l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~  179 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK  179 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             ccccccccccccccccccccch-hccccchhhhhchhhhhchhhh--hccccccccccccccccccchhhcccccceecc
Confidence            3333444444555555544433 2334556667777776665543  445577888888888888777788888888888


Q ss_pred             CCCCCCC-CCCCCCCCCCCeeecccccccccccc
Q 017047          325 LSFNDFK-GPGFEPLENCKALQFCSNCILLETKL  357 (378)
Q Consensus       325 LS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i~~L  357 (378)
                      |++|+|+ ...|..|.+|++|++.+|+|+.+..+
T Consensus       180 Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~l  213 (227)
T d1h6ua2         180 ADDNKISDISPLASLPNLIEVHLKNNQISDVSPL  213 (227)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGG
T ss_pred             cCCCccCCChhhcCCCCCCEEECcCCcCCCCccc
Confidence            8888888 36677888888888888888765443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=1.3e-09  Score=95.05  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047          245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD  324 (378)
Q Consensus       245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld  324 (378)
                      +........+++.++.+..... ...+..|+.|++.+|.+..+.+  +..+++|+.|+|++|+|..++.|..|++|++|+
T Consensus       125 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~  201 (227)
T d1h6ua2         125 LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVH  201 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred             hccccchhhhhchhhhhchhhh-hccccccccccccccccccchh--hcccccceecccCCCccCCChhhcCCCCCCEEE
Confidence            3333444445556666655443 4567789999999999988764  777899999999999999998899999999999


Q ss_pred             CCCCCCC-CCCCCCCCCCCeeeccc
Q 017047          325 LSFNDFK-GPGFEPLENCKALQFCS  348 (378)
Q Consensus       325 LS~N~Ls-~~~f~~L~nLk~LdLsn  348 (378)
                      |++|+|+ ...|.++.+|+.|++.+
T Consensus       202 Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         202 LKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             CcCCcCCCCcccccCCCCCEEEeeC
Confidence            9999999 46788999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.92  E-value=2e-10  Score=104.14  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=82.0

Q ss_pred             hhccccccccccCC-Ccee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCC
Q 017047          245 LSGQRRAGTPQSKD-SRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRV  320 (378)
Q Consensus       245 L~~~~~~~T~dlrd-nrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnL  320 (378)
                      +....+...+++.+ |.|. .+|..+.++.+|++|||++|+|.++.+..+..+..|+++++.+|.+...  ..|..++.|
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            34444455577764 6676 6888778888888888888888888777777778888888888887655  678888888


Q ss_pred             cEEeCCCCCCCC---CCCCCCCCC-Ceeeccccccccc
Q 017047          321 KVLDLSFNDFKG---PGFEPLENC-KALQFCSNCILLE  354 (378)
Q Consensus       321 q~LdLS~N~Ls~---~~f~~L~nL-k~LdLsnNrIs~i  354 (378)
                      +.++|++|.+.+   ..+..+..+ +.|++.+|+|+..
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             ceeecccccccccccccccccccccccccccccccccc
Confidence            888888888873   445555554 7788888888754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.89  E-value=3.3e-09  Score=94.35  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=74.6

Q ss_pred             cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047          250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND  329 (378)
Q Consensus       250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~  329 (378)
                      +...+|+.++++..+|+.   +.+|++|+|++|+|+.++..    +.+|+.|++.+|.|+.++.+.  ..|++|||++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhhc--cccccccccccc
Confidence            355678888888888864   45788999999999988742    357899999999888775442  468899999998


Q ss_pred             CC-CCCCCCCCCCCeeeccccccccc
Q 017047          330 FK-GPGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       330 Ls-~~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |. .+.+..+.+|+.|++.+|.+...
T Consensus       110 l~~lp~~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         110 LEKLPELQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSCC
T ss_pred             cccccchhhhccceeecccccccccc
Confidence            88 46778888899999888877643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-09  Score=90.42  Aligned_cols=87  Identities=18%  Similarity=0.139  Sum_probs=71.6

Q ss_pred             hhccccccccccCCC-ceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCc
Q 017047          245 LSGQRRAGTPQSKDS-RFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVK  321 (378)
Q Consensus       245 L~~~~~~~T~dlrdn-rfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq  321 (378)
                      |+...+...+++.+| .+..++... ..+.+|+.|+|++|+|+.|++..|..+++|+.|+|++|+|..+ ..+....+|+
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~  106 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccc
Confidence            444455566677654 588888654 4688999999999999999999899999999999999999999 5544455799


Q ss_pred             EEeCCCCCCC
Q 017047          322 VLDLSFNDFK  331 (378)
Q Consensus       322 ~LdLS~N~Ls  331 (378)
                      .|+|++|.|.
T Consensus       107 ~L~L~~Np~~  116 (156)
T d2ifga3         107 ELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCC
T ss_pred             ccccCCCccc
Confidence            9999999997

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.87  E-value=7.4e-10  Score=100.35  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=76.6

Q ss_pred             cccCCCcee---ecCcccccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047          254 PQSKDSRFI---VLPQVEIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF  327 (378)
Q Consensus       254 ~dlrdnrfs---~LP~l~~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~  327 (378)
                      +++.++.+.   .+|..+.++..|++|||++ |+|.+..+..|..+++|++|+|++|+|.++  ..+..+.+|++|++++
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            445554444   5788888888888888886 788754444566778888888888888876  5577888888888888


Q ss_pred             CCCCC---CCCCCCCCCCeeeccccccccc
Q 017047          328 NDFKG---PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      |.+..   ..|..+.+|+.|++.+|.+...
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~  164 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             ccccccCchhhccCcccceeeccccccccc
Confidence            88773   5678888888888888887643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.85  E-value=1.4e-11  Score=108.05  Aligned_cols=94  Identities=19%  Similarity=0.239  Sum_probs=78.7

Q ss_pred             eeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccC-CCCCCCcEEeCCCCCCCC-CCCCCC
Q 017047          261 FIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGI-EILTRVKVLDLSFNDFKG-PGFEPL  338 (378)
Q Consensus       261 fs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f-~~LtnLq~LdLS~N~Ls~-~~f~~L  338 (378)
                      +..++..+..+.+|++|+|++|+|+.++  .|..+++|+.|+|++|.|..++.+ ..+.+|++|+|++|+|+. ..+..|
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l  114 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhccccccccccccccccccccccccccccccccccccc
Confidence            4445555667889999999999999986  477789999999999999998554 445689999999999994 667888


Q ss_pred             CCCCeeeccccccccccc
Q 017047          339 ENCKALQFCSNCILLETK  356 (378)
Q Consensus       339 ~nLk~LdLsnNrIs~i~~  356 (378)
                      .+|+.|++.+|+|+.+..
T Consensus       115 ~~L~~L~L~~N~i~~~~~  132 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGE  132 (198)
T ss_dssp             HHSSEEEESEEECCCHHH
T ss_pred             ccccccccccchhccccc
Confidence            999999999999986643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.8e-09  Score=93.82  Aligned_cols=80  Identities=15%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCC-CCCCCC---CCCCCCCCCCeee
Q 017047          273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLS-FNDFKG---PGFEPLENCKALQ  345 (378)
Q Consensus       273 sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS-~N~Ls~---~~f~~L~nLk~Ld  345 (378)
                      ++++|||++|+|+.++...|..+++|++|+|++|.+...   ..|..+.+|++|++. .|++..   ..|..+.+|+.|+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            345555555555555544444445555555555544432   234444555544443 233331   3344445555555


Q ss_pred             ccccccc
Q 017047          346 FCSNCIL  352 (378)
Q Consensus       346 LsnNrIs  352 (378)
                      +.+|.|.
T Consensus       110 l~~~~l~  116 (242)
T d1xwdc1         110 ISNTGIK  116 (242)
T ss_dssp             EESCCCC
T ss_pred             cchhhhc
Confidence            5555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.57  E-value=1.2e-07  Score=83.98  Aligned_cols=97  Identities=20%  Similarity=0.258  Sum_probs=76.5

Q ss_pred             ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCC
Q 017047          251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDF  330 (378)
Q Consensus       251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~L  330 (378)
                      ..++++.+|+|..+|..   +.+|+.|++.+|+++.+..    ..+.|++|+|++|.|..++.++.+++|++|++++|.+
T Consensus        60 L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          60 LESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhh----hccccccccccccccccccchhhhccceeeccccccc
Confidence            45678889999999975   4579999999999998873    2357999999999999998889999999999999987


Q ss_pred             CC---------------------CCCCCCCCCCeeeccccccccc
Q 017047          331 KG---------------------PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       331 s~---------------------~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ..                     ..+..+..++.|++.+|.+..+
T Consensus       133 ~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         133 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccccccchhhccccccccccccccccceeccccccccccc
Confidence            62                     1344555667777777766544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.9e-07  Score=80.76  Aligned_cols=106  Identities=10%  Similarity=-0.040  Sum_probs=57.5

Q ss_pred             ccccccccCCCceeecCcccc--cCCCcceEEecCCcCCccCccccCCC-CCccEEEcCCCCCCCc-ccCCCCCCCcEE-
Q 017047          249 RRAGTPQSKDSRFIVLPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQ-PNLEFVYLRDNMLSTL-EGIEILTRVKVL-  323 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL-~nLe~LdLs~NkLs~L-~~f~~LtnLq~L-  323 (378)
                      .+...+++.+|+|..++....  .+..|..+...++.+..+....|..+ ..++.|++.+|+|..+ ..+..+.+++.+ 
T Consensus       103 ~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~  182 (242)
T d1xwdc1         103 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN  182 (242)
T ss_dssp             TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEE
T ss_pred             ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccc
Confidence            344445555555555443221  23344444555556666655555433 3566667777777666 333444444333 


Q ss_pred             eCCCCCCC-C--CCCCCCCCCCeeeccccccccc
Q 017047          324 DLSFNDFK-G--PGFEPLENCKALQFCSNCILLE  354 (378)
Q Consensus       324 dLS~N~Ls-~--~~f~~L~nLk~LdLsnNrIs~i  354 (378)
                      ++.+|+|+ .  ..|.++.+|+.|++.+|+|+.+
T Consensus       183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             cccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            45666666 2  3466677777777777776644

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.4e-08  Score=83.38  Aligned_cols=62  Identities=23%  Similarity=0.213  Sum_probs=38.0

Q ss_pred             cCCCcceEEecCCcCCccCc--cccCCCCCccEEEcCCCCCCCcccC--CCCCCCcEEeCCCCCCC
Q 017047          270 KAGDDVRLDLRGHRVRSLIA--SGLNLQPNLEFVYLRDNMLSTLEGI--EILTRVKVLDLSFNDFK  331 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL~~--s~f~lL~nLe~LdLs~NkLs~L~~f--~~LtnLq~LdLS~N~Ls  331 (378)
                      ++..|++|||++|+|+.+.+  ..+..+++|+.|+|++|.|..++.+  ....+|+.|+|.+|.|.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            45667777777777776643  2234456777777777777766322  23345677777777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.6e-07  Score=84.13  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=74.4

Q ss_pred             ccccccccCCCceeec--CcccccCCCcceEEecCCcCCccC----ccccCCCCCccEEEcCCCCCCCc------ccCC-
Q 017047          249 RRAGTPQSKDSRFIVL--PQVEIKAGDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLSTL------EGIE-  315 (378)
Q Consensus       249 ~~~~T~dlrdnrfs~L--P~l~~KlssL~~LDLSgN~LssL~----~s~f~lL~nLe~LdLs~NkLs~L------~~f~-  315 (378)
                      ++...+|++++++...  ......+.+|+.|+|.+|.|+...    ...+..+++|++|||++|.|+..      ..+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3455677777777652  223335677899999999887422    12345678999999999998532      3333 


Q ss_pred             CCCCCcEEeCCCCCCCC-------CCCCCCCCCCeeecccccccc
Q 017047          316 ILTRVKVLDLSFNDFKG-------PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       316 ~LtnLq~LdLS~N~Ls~-------~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      ...+|++|+|++|+|+.       ..+..+.+|++|++.+|.|..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            34579999999999972       356778899999999998863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1e-06  Score=80.07  Aligned_cols=82  Identities=21%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             CcceEEecCCcCCccCcc-ccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCC--C-----CCCC-C
Q 017047          273 DDVRLDLRGHRVRSLIAS-GLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFK--G-----PGFE-P  337 (378)
Q Consensus       273 sL~~LDLSgN~LssL~~s-~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls--~-----~~f~-~  337 (378)
                      +|+.|||++|+|+...-. .+..+.+|+.|+|.+|.|+..      ..+..+++|+.|||++|.|+  +     ..+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            488999999999874311 244568999999999998732      45678999999999999997  1     2332 3


Q ss_pred             CCCCCeeeccccccccc
Q 017047          338 LENCKALQFCSNCILLE  354 (378)
Q Consensus       338 L~nLk~LdLsnNrIs~i  354 (378)
                      ..+|+.|++.+|.|+..
T Consensus        83 ~~~L~~L~L~~n~it~~   99 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGA   99 (460)
T ss_dssp             TCCCCEEECTTSCCBGG
T ss_pred             CCCCCEEECCCCCcccc
Confidence            35799999999998744

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.89  E-value=9.6e-07  Score=80.63  Aligned_cols=84  Identities=23%  Similarity=0.245  Sum_probs=43.2

Q ss_pred             cCCCcceEEecCCcCCcc----CccccCCCCCccEEEcCCCCCCCc------ccCCC--CCCCcEEeCCCCCCCC-----
Q 017047          270 KAGDDVRLDLRGHRVRSL----IASGLNLQPNLEFVYLRDNMLSTL------EGIEI--LTRVKVLDLSFNDFKG-----  332 (378)
Q Consensus       270 KlssL~~LDLSgN~LssL----~~s~f~lL~nLe~LdLs~NkLs~L------~~f~~--LtnLq~LdLS~N~Ls~-----  332 (378)
                      .+..|+.|+|++|.|...    ....+..+++|++|+|++|.|...      ..+..  ...|++|||++|+|..     
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             chhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence            445566666666665421    111233445666666666666532      22222  2446666666666651     


Q ss_pred             --CCC-CCCCCCCeeecccccccc
Q 017047          333 --PGF-EPLENCKALQFCSNCILL  353 (378)
Q Consensus       333 --~~f-~~L~nLk~LdLsnNrIs~  353 (378)
                        ..+ ..+.+|+.|++.+|+|..
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHccCCCCCEEECCCCcCCC
Confidence              111 134556666666666653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.2e-07  Score=78.24  Aligned_cols=79  Identities=23%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             ceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCccc----CCCCCCCcEEeCCCCCCCC-CC--CCCCCCCCeeecc
Q 017047          275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG----IEILTRVKVLDLSFNDFKG-PG--FEPLENCKALQFC  347 (378)
Q Consensus       275 ~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~----f~~LtnLq~LdLS~N~Ls~-~~--f~~L~nLk~LdLs  347 (378)
                      ..|++..|.+..+. ..+..+++|++|+|++|+|+.+..    +..|++|+.|||++|+|+. ..  +....+|+.|++.
T Consensus        45 ~~l~~~~~~~~~l~-~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~  123 (162)
T d1koha1          45 VVLNRRSSMAATLR-IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD  123 (162)
T ss_dssp             CCTTSHHHHHHHHH-HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCT
T ss_pred             hhcchhhhHhhhhH-HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecC
Confidence            33444444444332 234456899999999999998843    4578999999999999993 22  2234478999999


Q ss_pred             ccccccc
Q 017047          348 SNCILLE  354 (378)
Q Consensus       348 nNrIs~i  354 (378)
                      +|.|...
T Consensus       124 ~Npl~~~  130 (162)
T d1koha1         124 GNSLSDT  130 (162)
T ss_dssp             TSTTSSS
T ss_pred             CCCcCcC
Confidence            9999754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.68  E-value=6.3e-06  Score=75.06  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=73.3

Q ss_pred             ccccCCCcee-----ecCcccccCCCcceEEecCCcCCcc-----CccccCCCCCccEEEcCCCCCCC-----c-ccCCC
Q 017047          253 TPQSKDSRFI-----VLPQVEIKAGDDVRLDLRGHRVRSL-----IASGLNLQPNLEFVYLRDNMLST-----L-EGIEI  316 (378)
Q Consensus       253 T~dlrdnrfs-----~LP~l~~KlssL~~LDLSgN~LssL-----~~s~f~lL~nLe~LdLs~NkLs~-----L-~~f~~  316 (378)
                      .+++.+|++.     .+......+..|+.|+|++|+|..-     ....+..+++|+.|+|++|.|..     + ..+..
T Consensus       162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             eeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence            3444555442     3444444677899999999999742     22345567899999999999854     2 56788


Q ss_pred             CCCCcEEeCCCCCCCC-------CCCC--CCCCCCeeecccccccc
Q 017047          317 LTRVKVLDLSFNDFKG-------PGFE--PLENCKALQFCSNCILL  353 (378)
Q Consensus       317 LtnLq~LdLS~N~Ls~-------~~f~--~L~nLk~LdLsnNrIs~  353 (378)
                      +++|++|+|++|.|..       ..+.  ....|+.|++++|.|..
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            9999999999999982       2222  33579999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.4e-06  Score=73.85  Aligned_cols=76  Identities=24%  Similarity=0.242  Sum_probs=36.5

Q ss_pred             cccccCCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCC-CCCC--ccc-CCCCCCCcEEeC
Q 017047          252 GTPQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-MLST--LEG-IEILTRVKVLDL  325 (378)
Q Consensus       252 ~T~dlrdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~N-kLs~--L~~-f~~LtnLq~LdL  325 (378)
                      ..+|+.++.+..  +......+.+|++|+|+++.+.......+..+++|+.|+|+++ .|+.  +.. +..|++|++|+|
T Consensus        49 ~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~l  128 (284)
T d2astb2          49 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  128 (284)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccc
Confidence            334445444322  2223334555666666666555433233444556666666653 3432  111 234566666666


Q ss_pred             CC
Q 017047          326 SF  327 (378)
Q Consensus       326 S~  327 (378)
                      ++
T Consensus       129 s~  130 (284)
T d2astb2         129 SW  130 (284)
T ss_dssp             CC
T ss_pred             cc
Confidence            55

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.30  E-value=4.3e-05  Score=64.14  Aligned_cols=83  Identities=14%  Similarity=0.073  Sum_probs=48.9

Q ss_pred             CCCcceEEecCC-cCCc--cC--ccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCC--C-----
Q 017047          271 AGDDVRLDLRGH-RVRS--LI--ASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFK--G-----  332 (378)
Q Consensus       271 lssL~~LDLSgN-~Lss--L~--~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls--~-----  332 (378)
                      ...|+.|+|+++ .|..  +.  ...+.....|+.|+|++|.|..-      ..+...+.|++|+|++|.|.  +     
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455777777753 4542  11  11233446677777777776421      33445667777777777777  1     


Q ss_pred             CCCCCCCCCCeeecccccccc
Q 017047          333 PGFEPLENCKALQFCSNCILL  353 (378)
Q Consensus       333 ~~f~~L~nLk~LdLsnNrIs~  353 (378)
                      ..+.....|++|++.+|++..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHhCCcCCEEECCCCcCCC
Confidence            345555667777777776553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00026  Score=63.42  Aligned_cols=78  Identities=23%  Similarity=0.243  Sum_probs=51.7

Q ss_pred             CCCcceEEecCC--cCCc--cCccccCCCCCccEEEcCCCC-CCC--cccCCCCCCCcEEeCCC-CCCCC---CCCCCCC
Q 017047          271 AGDDVRLDLRGH--RVRS--LIASGLNLQPNLEFVYLRDNM-LST--LEGIEILTRVKVLDLSF-NDFKG---PGFEPLE  339 (378)
Q Consensus       271 lssL~~LDLSgN--~Lss--L~~s~f~lL~nLe~LdLs~Nk-Ls~--L~~f~~LtnLq~LdLS~-N~Ls~---~~f~~L~  339 (378)
                      +..|+.|+|++.  .+..  +.. .+..+++|+.|+|++|. |+.  +..+..+++|++|+|++ +.|+.   ..+..++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~-l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~  225 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  225 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             ccccchhhhcccccccccccccc-cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC
Confidence            456888888764  3432  211 22346788888888754 542  26677788888888887 56762   4566777


Q ss_pred             CCCeeecccc
Q 017047          340 NCKALQFCSN  349 (378)
Q Consensus       340 nLk~LdLsnN  349 (378)
                      +|+.|++.++
T Consensus       226 ~L~~L~l~~~  235 (284)
T d2astb2         226 TLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEeeeCC
Confidence            8888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.46  E-value=0.00041  Score=57.94  Aligned_cols=85  Identities=9%  Similarity=0.064  Sum_probs=61.9

Q ss_pred             cccCCCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCCC-----
Q 017047          268 EIKAGDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKG-----  332 (378)
Q Consensus       268 ~~KlssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls~-----  332 (378)
                      ......|+.|+|++|.|..-...    .+...+.|+.|+|++|.|..-      .++...+.|++|+|++|.+..     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            34567899999999999742211    233357899999999999752      578888999999999997651     


Q ss_pred             -----CCCCCCCCCCeeeccccccc
Q 017047          333 -----PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       333 -----~~f~~L~nLk~LdLsnNrIs  352 (378)
                           ..+.....|+.|++..+...
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHhCCCccEeeCcCCCch
Confidence                 22334567888888766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.07  E-value=0.00069  Score=55.83  Aligned_cols=36  Identities=11%  Similarity=0.068  Sum_probs=15.7

Q ss_pred             CCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCC
Q 017047          296 PNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFK  331 (378)
Q Consensus       296 ~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls  331 (378)
                      ++|+.|+|++|.|..-      ..+.....|+.|++.+|.+.
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            4444444444444321      22333444444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.12  E-value=0.0015  Score=53.66  Aligned_cols=85  Identities=13%  Similarity=0.053  Sum_probs=62.1

Q ss_pred             cccCCCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeC--CCCCCC--C-
Q 017047          268 EIKAGDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDL--SFNDFK--G-  332 (378)
Q Consensus       268 ~~KlssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdL--S~N~Ls--~-  332 (378)
                      ..+...|+.|+|++|.|..-...    .+.....|+.|++.+|.+..-      ..+...+.|+.++|  .+|.|.  + 
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            34567899999999999743211    234458899999999998642      67788899987666  567776  2 


Q ss_pred             ----CCCCCCCCCCeeeccccccc
Q 017047          333 ----PGFEPLENCKALQFCSNCIL  352 (378)
Q Consensus       333 ----~~f~~L~nLk~LdLsnNrIs  352 (378)
                          ..+....+|+.|++..|...
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCcCEEeCcCCCCc
Confidence                34556788999998777654