Citrus Sinensis ID: 017057
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 378 | ||||||
| 225454688 | 468 | PREDICTED: GPCR-type G protein 1 [Vitis | 0.925 | 0.747 | 0.917 | 0.0 | |
| 449455238 | 480 | PREDICTED: GPCR-type G protein 1-like [C | 0.925 | 0.729 | 0.9 | 0.0 | |
| 255558113 | 468 | Protein GPR89A, putative [Ricinus commun | 0.925 | 0.747 | 0.922 | 0.0 | |
| 224124092 | 469 | predicted protein [Populus trichocarpa] | 0.925 | 0.746 | 0.894 | 1e-176 | |
| 356538676 | 468 | PREDICTED: GPCR-type G protein 2-like [G | 0.925 | 0.747 | 0.885 | 1e-171 | |
| 356543187 | 468 | PREDICTED: GPCR-type G protein 2-like [G | 0.925 | 0.747 | 0.885 | 1e-171 | |
| 297799212 | 467 | hypothetical protein ARALYDRAFT_913771 [ | 0.923 | 0.747 | 0.834 | 1e-169 | |
| 22328980 | 467 | GPCR-type G protein 2 [Arabidopsis thali | 0.923 | 0.747 | 0.831 | 1e-169 | |
| 110737372 | 467 | hypothetical protein [Arabidopsis thalia | 0.923 | 0.747 | 0.828 | 1e-168 | |
| 357165547 | 468 | PREDICTED: GPCR-type G protein 1-like [B | 0.925 | 0.747 | 0.834 | 1e-167 |
| >gi|225454688|ref|XP_002270494.1| PREDICTED: GPCR-type G protein 1 [Vitis vinifera] gi|297737266|emb|CBI26467.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/350 (91%), Positives = 333/350 (95%)
Query: 1 MGWGIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQL 60
MGWG+ IYEG VV GSL LLGWAGLWFLN RLYKEYEEKRALVQI+FSVVFAFSCNLLQL
Sbjct: 1 MGWGLVIYEGVVVVGSLCLLGWAGLWFLNRRLYKEYEEKRALVQILFSVVFAFSCNLLQL 60
Query: 61 VLFEIIPILSKEARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSGVRKERAALGAILFL 120
VLFEIIP+LSKEAR +NWKVDLFCLILLLVFMLPYYHCYLMLCN+GVRKERAALGA+LFL
Sbjct: 61 VLFEIIPLLSKEARWMNWKVDLFCLILLLVFMLPYYHCYLMLCNNGVRKERAALGAVLFL 120
Query: 121 LAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLF 180
LAFLYAFWRMGIHFPMPSP+KGFFTIPQLVSRIGVIGVTV+AVL+GFGAVNLPYSYLSLF
Sbjct: 121 LAFLYAFWRMGIHFPMPSPDKGFFTIPQLVSRIGVIGVTVLAVLSGFGAVNLPYSYLSLF 180
Query: 181 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTV 240
IREIDE EIKALERQLMQSIETCI KKKKIIL QMEM+RIQGSEEKLKARSF KRIVGTV
Sbjct: 181 IREIDEMEIKALERQLMQSIETCITKKKKIILSQMEMERIQGSEEKLKARSFLKRIVGTV 240
Query: 241 VRSVQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGY 300
VRSVQ+DQ+EQDIK MEAEVQ LEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGY
Sbjct: 241 VRSVQEDQREQDIKNMEAEVQGLEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGY 300
Query: 301 ALSIYCVYKMIKSLQSVVFKEAGSVDPVTMTISIFLQFFDIGINAQLLSQ 350
A SIYCVYKMIKSLQSVVFKEAG VDPVT TISIFLQFFDIGINA LSQ
Sbjct: 301 ACSIYCVYKMIKSLQSVVFKEAGFVDPVTRTISIFLQFFDIGINAASLSQ 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455238|ref|XP_004145360.1| PREDICTED: GPCR-type G protein 1-like [Cucumis sativus] gi|449515035|ref|XP_004164555.1| PREDICTED: GPCR-type G protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255558113|ref|XP_002520085.1| Protein GPR89A, putative [Ricinus communis] gi|223540849|gb|EEF42409.1| Protein GPR89A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224124092|ref|XP_002319243.1| predicted protein [Populus trichocarpa] gi|222857619|gb|EEE95166.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356538676|ref|XP_003537827.1| PREDICTED: GPCR-type G protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356543187|ref|XP_003540044.1| PREDICTED: GPCR-type G protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297799212|ref|XP_002867490.1| hypothetical protein ARALYDRAFT_913771 [Arabidopsis lyrata subsp. lyrata] gi|297313326|gb|EFH43749.1| hypothetical protein ARALYDRAFT_913771 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|22328980|ref|NP_194493.2| GPCR-type G protein 2 [Arabidopsis thaliana] gi|229487543|sp|Q0WQG8.2|GTG2_ARATH RecName: Full=GPCR-type G protein 2 gi|332659971|gb|AEE85371.1| GPCR-type G protein 2 [Arabidopsis thaliana] gi|333109267|gb|AEF15912.1| GPCR-type G protein 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|110737372|dbj|BAF00631.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|357165547|ref|XP_003580421.1| PREDICTED: GPCR-type G protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 378 | ||||||
| TAIR|locus:2010796 | 468 | GTG1 "GPCR-type G protein 1" [ | 0.925 | 0.747 | 0.768 | 2.6e-141 | |
| UNIPROTKB|Q5F448 | 455 | GPR89 "Golgi pH regulator" [Ga | 0.878 | 0.729 | 0.374 | 3.1e-60 | |
| UNIPROTKB|B7ZAQ6 | 455 | GPR89A "Golgi pH regulator A" | 0.878 | 0.729 | 0.365 | 1.7e-59 | |
| UNIPROTKB|P0CG08 | 455 | GPR89B "Golgi pH regulator B" | 0.878 | 0.729 | 0.365 | 1.7e-59 | |
| UNIPROTKB|Q5BIM9 | 455 | GPR89A "Golgi pH regulator" [B | 0.878 | 0.729 | 0.365 | 2.2e-59 | |
| UNIPROTKB|B2ZXD5 | 455 | GPR89 "Golgi pH regulator" [Cr | 0.878 | 0.729 | 0.362 | 3.2e-58 | |
| MGI|MGI:1914799 | 455 | Gpr89 "G protein-coupled recep | 0.878 | 0.729 | 0.356 | 8.4e-58 | |
| WB|WBGene00013551 | 465 | Y75B8A.16 [Caenorhabditis eleg | 0.899 | 0.731 | 0.356 | 1.3e-54 | |
| WB|WBGene00007528 | 460 | C11H1.2 [Caenorhabditis elegan | 0.904 | 0.743 | 0.354 | 2.6e-54 | |
| DICTYBASE|DDB_G0283855 | 547 | DDB_G0283855 "Protein GPR89" [ | 0.523 | 0.361 | 0.318 | 2.5e-45 |
| TAIR|locus:2010796 GTG1 "GPCR-type G protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
Identities = 269/350 (76%), Positives = 301/350 (86%)
Query: 1 MGWGIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQL 60
M +G AIYEGTVV SL LLGWAGLWFLN RLYKEYEEKRALVQIIFSVVFAFSCNLLQL
Sbjct: 1 MSYGWAIYEGTVVIASLSLLGWAGLWFLNRRLYKEYEEKRALVQIIFSVVFAFSCNLLQL 60
Query: 61 VLFEIIPILSKEARVVNWKVDXXXXXXXXXXXXPYYHCYLMLCNSGVRKERXXXXXXXXX 120
VLFEIIP+LS+EAR++NWKVD PYYHCYLML NSGVR+ER
Sbjct: 61 VLFEIIPVLSREARMINWKVDLFCLILLLVFMLPYYHCYLMLRNSGVRRERASVGAFLFL 120
Query: 121 XXXXXXXWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLF 180
WRMG+HFPMPS +KGFFT+PQLVSRIGVIGVT+MAVL+GFGAVNLPYSY+SLF
Sbjct: 121 SAFLYAFWRMGVHFPMPSADKGFFTMPQLVSRIGVIGVTLMAVLSGFGAVNLPYSYISLF 180
Query: 181 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTV 240
IREI+E++I +LERQL+QS ETCIAKKKKIILCQ+E++R QGSEE K SFF+RIVGTV
Sbjct: 181 IREIEEADIISLERQLIQSTETCIAKKKKIILCQLEVERNQGSEENQKRSSFFRRIVGTV 240
Query: 241 VRSVQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGY 300
VRSVQDDQKEQDIKI+EAEV+ALEELSKQLFLE+YELRQAK+AAAYSRTW+GH+QNLLGY
Sbjct: 241 VRSVQDDQKEQDIKILEAEVEALEELSKQLFLEVYELRQAKDAAAYSRTWKGHVQNLLGY 300
Query: 301 ALSIYCVYKMIKSLQSVVFKEAGSVDPVTMTISIFLQFFDIGINAQLLSQ 350
A SIYCVYKM+KSLQSVVFKEAG+ DPVT ISIFL+ FDIG++A LLSQ
Sbjct: 301 ACSIYCVYKMLKSLQSVVFKEAGTKDPVTTMISIFLRLFDIGVDAALLSQ 350
|
|
| UNIPROTKB|Q5F448 GPR89 "Golgi pH regulator" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B7ZAQ6 GPR89A "Golgi pH regulator A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P0CG08 GPR89B "Golgi pH regulator B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5BIM9 GPR89A "Golgi pH regulator" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B2ZXD5 GPR89 "Golgi pH regulator" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1914799 Gpr89 "G protein-coupled receptor 89" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00013551 Y75B8A.16 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00007528 C11H1.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0283855 DDB_G0283855 "Protein GPR89" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00013962001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (468 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00032290001 | • | • | 0.652 | ||||||||
| CHLH | • | 0.400 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 378 | |||
| pfam12537 | 71 | pfam12537, DUF3735, Protein of unknown function (D | 5e-22 |
| >gnl|CDD|221626 pfam12537, DUF3735, Protein of unknown function (DUF3735) | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 5e-22
Identities = 35/69 (50%), Positives = 51/69 (73%)
Query: 142 GFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIE 201
GFF + L+SR+ VIGVT+MA+L+GFGAV+ PY Y SLF R + ES+I LE++L +++
Sbjct: 2 GFFYLENLLSRVSVIGVTIMAILSGFGAVSTPYYYFSLFRRPVSESDINNLEKRLWHTLD 61
Query: 202 TCIAKKKKI 210
KKK++
Sbjct: 62 LLAEKKKEL 70
|
This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved LSG sequence motif. There is a single completely conserved residue G that may be functionally important. Length = 71 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 378 | |||
| KOG2417 | 462 | consensus Predicted G-protein coupled receptor [Si | 100.0 | |
| PF12537 | 72 | DUF3735: Protein of unknown function (DUF3735); In | 99.92 | |
| PF12430 | 196 | ABA_GPCR: Abscisic acid G-protein coupled receptor | 99.81 | |
| PF04791 | 471 | LMBR1: LMBR1-like membrane protein; InterPro: IPR0 | 96.84 | |
| PRK11546 | 143 | zraP zinc resistance protein; Provisional | 91.93 | |
| PF11712 | 142 | Vma12: Endoplasmic reticulum-based factor for asse | 81.54 |
| >KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-107 Score=787.03 Aligned_cols=353 Identities=51% Similarity=0.847 Sum_probs=330.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhHHhHH
Q 017057 4 GIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDLF 83 (378)
Q Consensus 4 ~~~~~~~~~~~~s~~~~f~~g~~ff~~~l~~dY~v~~~~~~~lFS~tfalS~~lfeLILfEI~~~~~~~~R~~~W~~tL~ 83 (378)
+|...|+.++.+|+.+||.+||+|++|+|||+||+||+.+|++||+|||+||+|+|||+|||.|++++++|..+|+.++.
T Consensus 3 ~~~~~d~~vv~~Sl~lff~~gw~f~~k~lfk~ye~~~~~Vq~Ifs~tfa~sc~lfeliifeii~vl~~~sr~~~w~~~l~ 82 (462)
T KOG2417|consen 3 GWDIYDAWVVIGSLILFFAAGWLFYNKQLFKNYEVHNRVVQFIFSVTFAFSCSLFELIIFEIIDVLSPESRMFCWKVCLS 82 (462)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeehhHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHhHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCcceecchhheeehhhHHHHHH
Q 017057 84 CLILLLVFMLPYYHCYLMLCNSGVRKERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAV 163 (378)
Q Consensus 84 ~Ll~lLivviP~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~FwkiG~~~p~~~~~~~~~~~e~~lsRIgViGVtlmAi 163 (378)
++++++++++|+|+||+++++.+++++++.++++.+|.+++|+|||+|||||+++++||++++||.++||||||||+||+
T Consensus 83 ~ill~lv~~ip~Y~~y~ii~~i~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTlMAv 162 (462)
T KOG2417|consen 83 LILLTLVFMIPYYHCYLIIRNIGVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAV 162 (462)
T ss_pred HHHHHHHHHHHHHhheeeeecccchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHH
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccchhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhccchhhhccccccc
Q 017057 164 LAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS 243 (378)
Q Consensus 164 LSGfGAVstPY~~~~~f~R~Vte~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s 243 (378)
||||||||+||+||++|.|||+|.||.++||||.||+||+++||||++.++-+ .++..+++.++.++++.|..+...++
T Consensus 163 LSGFGAVN~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~-~~~l~~e~~~k~pSff~r~w~~~~~~ 241 (462)
T KOG2417|consen 163 LSGFGAVNAPYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLE-EKRLQSEKVQKEPSFFRRFWGMFSSS 241 (462)
T ss_pred HhccCccCCchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhcccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988742 12222233455678777776532244
Q ss_pred cCcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhhhHhhHHhhHHHHHHHHHHhhccCC
Q 017057 244 VQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAG 323 (378)
Q Consensus 244 ~~~~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~FsiYCvyKI~~s~iniif~r~~ 323 (378)
.++++.+++|+.+|+|+++||+++||||+|+.||+++++|.++|||++|+++|++||+||+||||||+++++|++|||+|
T Consensus 242 ~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inIvFdrvG 321 (462)
T KOG2417|consen 242 VQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINIVFDRVG 321 (462)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHHHhhhcc
Confidence 46667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCccchHHHHhhhhhhhcc
Q 017057 324 SVDPVTMTISIFLQFFDIGINAQLLSQVSCQSWL 357 (378)
Q Consensus 324 ~~DPitr~L~i~~~~~~~~~Dv~~wsq~iSl~~~ 357 (378)
++||+||++++.++++|++.|+.+||||||++..
T Consensus 322 k~DPVTr~IeI~v~~~gi~~Dv~fwsQyISf~lV 355 (462)
T KOG2417|consen 322 KVDPVTRGIEITVNYLGIDFDVSFWSQYISFFLV 355 (462)
T ss_pred CcCCccceeEEEEEEecccchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999864
|
|
| >PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance | Back alignment and domain information |
|---|
| >PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor | Back alignment and domain information |
|---|
| >PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor | Back alignment and domain information |
|---|
| >PRK11546 zraP zinc resistance protein; Provisional | Back alignment and domain information |
|---|
| >PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 378 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 58/388 (14%), Positives = 120/388 (30%), Gaps = 103/388 (26%)
Query: 31 RLYKEYEEKRALVQIIFSVV--------FAFSCNLL-----QLVLFEIIPILSKEARVVN 77
RL K + L ++ V F SC +L + V + + + +
Sbjct: 236 RLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 78 WK--------VDLFCLIL-LLVFMLPYYHCYLMLCNSGVRKERAALGAILFLLAFLYAFW 128
L L LP R L L+ +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP----------------REVLTTNPRRLSIIAESI 337
Query: 129 RMGI----HFPMPSPEKGFFTIPQLVSRIGVIGVTVMAV-----------LAGFGA-VNL 172
R G+ ++ + +K ++ I I ++ + L+ F ++
Sbjct: 338 RDGLATWDNWKHVNCDK--------LTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 173 PYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKK-----IILCQMEMDRIQGSEEKL 227
P LSL ++ +S++ + +L + + + K+ K I +E+ +++ E
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISIPSIYLEL-KVKLENEY- 443
Query: 228 KARSFFKRIVG--TVVRSVQDDQKEQDIK-----------IMEAEVQALEELSKQLFLEI 274
+ + IV + ++ D + E L + +FL+
Sbjct: 444 ---ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 275 YELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVY---------KMIKSLQSVVFKEAGSV 325
L Q + + G + N L L Y Y +++ ++ + K ++
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 326 --DPVTMTISIFLQFFDIGINAQLLSQV 351
T + I L D I + QV
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 378 | |||
| 4dzn_A | 33 | Coiled-coil peptide CC-PIL; de novo protein; HET: | 83.73 |
| >4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B | Back alignment and structure |
|---|
Probab=83.73 E-value=2.4 Score=26.53 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
+|+.|++||++|+.=-..|-.|+..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5778888888777665566666665553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00