Citrus Sinensis ID: 017059

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MFSCHGTLIQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF
cccEEEEEEcccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHcccccccccEEEEEEcccccEEEcccccccccccccEEccccccHHHHHHHHccHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEcccccEEEEEcccccHHHHHHHcccccccccccccccccHHcHHHHHHHHccccccccEEEcccccccccccccEEEEHHHHHHcccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEcccccccccEEEccccccccccccccccccEEcccccccc
ccccEEEEEEccccccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccHHHHHHHHHcccccccHccEEEEEccccccEccccEEEEcccccEEEccccccHHHHHHHHccHHHHHHHcccEEEEEEEEccEEEEEcccHEHHHHHHccccHHHHHEEcccccccEEEEEEEccccccEEEEEEcccHHHHHHcccccccEEEEHHHHHHHHHcHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEEcccccccEEEEEEccHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccEEEcccccccccEEEcccEccccccHHHHHcccEEcccEEEcc
mfschgtliqgtrlgssdpkgcvniglpsgkSLFQLQAERILCVQRLAAQvtsegggsgsAAIHWYImtspftddatrkyfeghkyfglesdqvtffqqgtipcvskdgrfimetpykvakapdgnggvySALKSSKLLEDMATRGIKYidcygvdnalvrvadptflgyFIDKGVSAGAKVVrkaypqekvgvfvrrgkggpltvveyseldpsLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGlekdsvyhlaekkipsihgqtvgFKLEQFIfdafpyapstaLFEVLreeefapvknangsnfdtpdSARLLVLRLHTRWVIAaggflthsvplyatgvevsplcsyageNLEAICRgrtfhapceigf
mfschgtliqgtrlgssdpkGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYkvakapdgngGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVrkaypqekvgvfvrrgkggpLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPvknangsnfdtpDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF
MFSCHGTLIQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEkvgvfvrrgkggPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF
********************GCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKN*****FDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCE***
*FSCHGTLIQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS*INQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF
MFSCHGTLIQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAA*********GSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF
MFSCHGTLIQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF
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MFSCHGTLIQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
O64765502 Probable UDP-N-acetylgluc no no 0.976 0.735 0.850 0.0
Q91YN5522 UDP-N-acetylhexosamine py yes no 0.947 0.685 0.447 2e-84
Q16222522 UDP-N-acetylhexosamine py yes no 0.947 0.685 0.447 3e-84
Q28CH3511 UDP-N-acetylhexosamine py yes no 0.928 0.686 0.463 3e-83
Q7ZWD4505 UDP-N-acetylhexosamine py yes no 0.941 0.704 0.449 4e-83
Q54GN5487 Probable UDP-N-acetylgluc yes no 0.960 0.745 0.422 2e-79
Q3KQV9507 UDP-N-acetylhexosamine py no no 0.941 0.702 0.438 2e-78
Q3TW96507 UDP-N-acetylhexosamine py no no 0.941 0.702 0.438 5e-78
O74933486 UDP-N-acetylglucosamine p N/A no 0.931 0.724 0.424 2e-74
P43123477 UDP-N-acetylglucosamine p yes no 0.910 0.721 0.428 1e-73
>sp|O64765|UAP1_ARATH Probable UDP-N-acetylglucosamine pyrophosphorylase OS=Arabidopsis thaliana GN=At2g35020 PE=2 SV=1 Back     alignment and function desciption
 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/369 (85%), Positives = 341/369 (92%)

Query: 10  QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
           QGTRLGSSDPKGC NIGLPSGKSLFQ+QAERILCVQRLA+Q  SE   +    I WYIMT
Sbjct: 134 QGTRLGSSDPKGCYNIGLPSGKSLFQIQAERILCVQRLASQAMSEASPTRPVTIQWYIMT 193

Query: 70  SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
           SPFT + T+K+F+ HKYFGLE DQVTFFQQGT+PC+SKDG+FIMETP+ ++KAPDGNGGV
Sbjct: 194 SPFTHEPTQKFFKSHKYFGLEPDQVTFFQQGTLPCISKDGKFIMETPFSLSKAPDGNGGV 253

Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
           Y+ALKSS+LLEDMA+RGIKY+DCYGVDN LVRVADPTFLGYFIDK  ++ AKVVRKAYPQ
Sbjct: 254 YTALKSSRLLEDMASRGIKYVDCYGVDNVLVRVADPTFLGYFIDKSAASAAKVVRKAYPQ 313

Query: 190 EKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249
           EKVGVFVRRGKGGPLTVVEY+ELD S+ASA NQ+TGRL++CWSNVCLHMFTLDFLNQVAN
Sbjct: 314 EKVGVFVRRGKGGPLTVVEYTELDQSMASATNQQTGRLQYCWSNVCLHMFTLDFLNQVAN 373

Query: 250 GLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 309
           GLEKDSVYHLAEKKIPSI+G  VG KLEQFIFD FPYAPSTALFEVLREEEFAPVKNANG
Sbjct: 374 GLEKDSVYHLAEKKIPSINGDIVGLKLEQFIFDCFPYAPSTALFEVLREEEFAPVKNANG 433

Query: 310 SNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT 369
           SN+DTP+SARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT
Sbjct: 434 SNYDTPESARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT 493

Query: 370 FHAPCEIGF 378
           FHAPCEI  
Sbjct: 494 FHAPCEISL 502

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 3
>sp|Q91YN5|UAP1_MOUSE UDP-N-acetylhexosamine pyrophosphorylase OS=Mus musculus GN=Uap1 PE=1 SV=1 Back     alignment and function description
>sp|Q16222|UAP1_HUMAN UDP-N-acetylhexosamine pyrophosphorylase OS=Homo sapiens GN=UAP1 PE=1 SV=3 Back     alignment and function description
>sp|Q28CH3|UAP1L_XENTR UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Xenopus tropicalis GN=uap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZWD4|UAP1L_DANRE UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Danio rerio GN=uap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q54GN5|UAP1_DICDI Probable UDP-N-acetylglucosamine pyrophosphorylase OS=Dictyostelium discoideum GN=uap1 PE=3 SV=1 Back     alignment and function description
>sp|Q3KQV9|UAP1L_HUMAN UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Homo sapiens GN=UAP1L1 PE=1 SV=2 Back     alignment and function description
>sp|Q3TW96|UAP1L_MOUSE UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Mus musculus GN=Uap1l1 PE=2 SV=1 Back     alignment and function description
>sp|O74933|UAP1_CANAX UDP-N-acetylglucosamine pyrophosphorylase OS=Candida albicans GN=UAP1 PE=1 SV=1 Back     alignment and function description
>sp|P43123|UAP1_YEAST UDP-N-acetylglucosamine pyrophosphorylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QRI1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
225423637 485 PREDICTED: probable UDP-N-acetylglucosam 0.973 0.758 0.905 0.0
449433495 503 PREDICTED: probable UDP-N-acetylglucosam 0.973 0.731 0.897 0.0
217074416 492 unknown [Medicago truncatula] gi|3884973 0.973 0.747 0.883 0.0
297823295 498 UTP--glucose-1-phosphate uridylyltransfe 0.976 0.740 0.867 0.0
356524976 490 PREDICTED: probable UDP-N-acetylglucosam 0.973 0.751 0.905 0.0
356512205 490 PREDICTED: probable UDP-N-acetylglucosam 0.973 0.751 0.905 0.0
30692244 505 N-acetylglucosamine-1-phosphate uridylyl 0.973 0.728 0.867 0.0
295126562 505 UTP:N-acetylglucosamine-1-P uridylyltran 0.973 0.728 0.867 0.0
297846082 500 F17F8.1 [Arabidopsis lyrata subsp. lyrat 0.973 0.736 0.864 0.0
15226877 502 putative UDP-N-acetylglucosamine pyropho 0.976 0.735 0.850 0.0
>gi|225423637|ref|XP_002276048.1| PREDICTED: probable UDP-N-acetylglucosamine pyrophosphorylase [Vitis vinifera] gi|297738002|emb|CBI27203.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/369 (90%), Positives = 354/369 (95%), Gaps = 1/369 (0%)

Query: 10  QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
           QGTRLGSSDPKGC NIGLPSGKSLFQLQAERILCVQRLAAQ T+EG G G   IHWYIMT
Sbjct: 118 QGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQSTNEGSG-GFVPIHWYIMT 176

Query: 70  SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
           SPFTDD TRK+FE HKYFGLE+DQ+TFFQQGTIPC+SKDGRFIMETPYKVAKAPDGNGGV
Sbjct: 177 SPFTDDVTRKFFESHKYFGLEADQITFFQQGTIPCISKDGRFIMETPYKVAKAPDGNGGV 236

Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
           YSALKSS+LLEDMATRG+KY+DCYGVDNALVRVADPTFLGYFIDKGV++ AKVVRKAYPQ
Sbjct: 237 YSALKSSRLLEDMATRGVKYLDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ 296

Query: 190 EKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249
           EKVGVFVRRGKGGPL+VVEYSELDP+LASAINQETGRLR+CWSNVCLHMFTLDFLNQVAN
Sbjct: 297 EKVGVFVRRGKGGPLSVVEYSELDPTLASAINQETGRLRYCWSNVCLHMFTLDFLNQVAN 356

Query: 250 GLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 309
           GLEKDS+YHLAEKKI S HG T+G KLEQFIFDAFPYAPSTAL+EVLREEEFAPVKNANG
Sbjct: 357 GLEKDSIYHLAEKKIASTHGYTMGLKLEQFIFDAFPYAPSTALYEVLREEEFAPVKNANG 416

Query: 310 SNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT 369
           SNFDTPDSA+LLVLRLHTRWV+AAGGFLTHSVPLYATGVE+SPLCSY+GENLEAICRGRT
Sbjct: 417 SNFDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGVEISPLCSYSGENLEAICRGRT 476

Query: 370 FHAPCEIGF 378
           FHAPCEI F
Sbjct: 477 FHAPCEISF 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449433495|ref|XP_004134533.1| PREDICTED: probable UDP-N-acetylglucosamine pyrophosphorylase-like [Cucumis sativus] gi|449490659|ref|XP_004158669.1| PREDICTED: probable UDP-N-acetylglucosamine pyrophosphorylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|217074416|gb|ACJ85568.1| unknown [Medicago truncatula] gi|388497374|gb|AFK36753.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297823295|ref|XP_002879530.1| UTP--glucose-1-phosphate uridylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297325369|gb|EFH55789.1| UTP--glucose-1-phosphate uridylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356524976|ref|XP_003531103.1| PREDICTED: probable UDP-N-acetylglucosamine pyrophosphorylase-like [Glycine max] Back     alignment and taxonomy information
>gi|356512205|ref|XP_003524811.1| PREDICTED: probable UDP-N-acetylglucosamine pyrophosphorylase-like [Glycine max] Back     alignment and taxonomy information
>gi|30692244|ref|NP_564372.3| N-acetylglucosamine-1-phosphate uridylyltransferase 1 [Arabidopsis thaliana] gi|15450739|gb|AAK96641.1| At1g31070/F17F8_1 [Arabidopsis thaliana] gi|332193190|gb|AEE31311.1| N-acetylglucosamine-1-phosphate uridylyltransferase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|295126562|gb|ADF80194.1| UTP:N-acetylglucosamine-1-P uridylyltransferase-1 [synthetic construct] Back     alignment and taxonomy information
>gi|297846082|ref|XP_002890922.1| F17F8.1 [Arabidopsis lyrata subsp. lyrata] gi|297336764|gb|EFH67181.1| F17F8.1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15226877|ref|NP_181047.1| putative UDP-N-acetylglucosamine pyrophosphorylase [Arabidopsis thaliana] gi|6136087|sp|O64765.1|UAP1_ARATH RecName: Full=Probable UDP-N-acetylglucosamine pyrophosphorylase gi|18087511|gb|AAL58890.1|AF462794_1 At2g35020/F19I3.25 [Arabidopsis thaliana] gi|3033397|gb|AAC12841.1| putative UDP-N-acetylglucosamine pyrophosphorylase [Arabidopsis thaliana] gi|56382033|gb|AAV85735.1| At2g35020 [Arabidopsis thaliana] gi|295126564|gb|ADF80195.1| UTP:N-acetylglucosamine-1-P uridylyltransferase-2 [Arabidopsis thaliana] gi|330253956|gb|AEC09050.1| putative UDP-N-acetylglucosamine pyrophosphorylase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2015791505 GlcNAc1pUT1 "N-acetylglucosami 0.968 0.724 0.841 2.2e-169
TAIR|locus:2044787502 GlcNAc1pUT2 "N-acetylglucosami 0.970 0.731 0.822 9.7e-167
UNIPROTKB|F1MJP7522 UAP1 "Uncharacterized protein" 0.838 0.607 0.479 4.1e-77
UNIPROTKB|F1S210521 UAP1 "Uncharacterized protein" 0.838 0.608 0.476 4.1e-77
UNIPROTKB|F1P7W7522 UAP1 "Uncharacterized protein" 0.838 0.607 0.476 5.2e-77
UNIPROTKB|Q16222522 UAP1 "UDP-N-acetylhexosamine p 0.838 0.607 0.473 1.4e-76
UNIPROTKB|G4MYL3504 MGG_15671 "Uncharacterized pro 0.939 0.704 0.464 1.5e-76
MGI|MGI:1334459522 Uap1 "UDP-N-acetylglucosamine 0.838 0.607 0.470 1.8e-76
ASPGD|ASPL0000037237505 ungA [Emericella nidulans (tax 0.941 0.704 0.459 1.9e-76
ZFIN|ZDB-GENE-040426-1056505 uap1l1 "UDP-N-acteylglucosamin 0.846 0.633 0.462 3.7e-71
TAIR|locus:2015791 GlcNAc1pUT1 "N-acetylglucosamine-1-phosphate uridylyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1647 (584.8 bits), Expect = 2.2e-169, P = 2.2e-169
 Identities = 309/367 (84%), Positives = 332/367 (90%)

Query:    10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
             QGTRLGSSDPKGC NIGLPSGKSLFQ+QAERILCVQRLAAQV SEG       IHWYIMT
Sbjct:   138 QGTRLGSSDPKGCFNIGLPSGKSLFQIQAERILCVQRLAAQVVSEGP-IRPVTIHWYIMT 196

Query:    70 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
             SPFTD+ATRKYF  HKYFGLE DQ++FFQQGT+PCV+KDG+FIMETP+ +AKAPDGNGGV
Sbjct:   197 SPFTDEATRKYFSSHKYFGLEPDQISFFQQGTLPCVTKDGKFIMETPFSLAKAPDGNGGV 256

Query:   130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
             Y+ALK S+LLEDMA+RGIKY+DCYGVDN LVRVADPTFLGYFIDKG ++ AKVVRKAYPQ
Sbjct:   257 YAALKCSRLLEDMASRGIKYVDCYGVDNVLVRVADPTFLGYFIDKGAASAAKVVRKAYPQ 316

Query:   190 EXXXXXXXXXXXXPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249
             E            PLTVVEYSELD S+ASAINQ TGRL++CWSNVCLHMFTLDFLNQVA 
Sbjct:   317 EQVGVFVRRGKGGPLTVVEYSELDQSMASAINQRTGRLQYCWSNVCLHMFTLDFLNQVAT 376

Query:   250 GLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 309
             GLEKDSVYHLAEKKIPS++G T+G KLEQFIFD+FPYAPSTALFEVLREEEFAPVKN NG
Sbjct:   377 GLEKDSVYHLAEKKIPSMNGYTMGLKLEQFIFDSFPYAPSTALFEVLREEEFAPVKNVNG 436

Query:   310 SNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT 369
             SNFDTP+SARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT
Sbjct:   437 SNFDTPESARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT 496

Query:   370 FHAPCEI 376
             FHAPCEI
Sbjct:   497 FHAPCEI 503
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0003977 "UDP-N-acetylglucosamine diphosphorylase activity" evidence=IDA
GO:0006047 "UDP-N-acetylglucosamine metabolic process" evidence=IDA
GO:0019276 "UDP-N-acetylgalactosamine metabolic process" evidence=IDA
GO:0052630 "UDP-N-acetylgalactosamine diphosphorylase activity" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2044787 GlcNAc1pUT2 "N-acetylglucosamine-1-phosphate uridylyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJP7 UAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S210 UAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7W7 UAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q16222 UAP1 "UDP-N-acetylhexosamine pyrophosphorylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G4MYL3 MGG_15671 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
MGI|MGI:1334459 Uap1 "UDP-N-acetylglucosamine pyrophosphorylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000037237 ungA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1056 uap1l1 "UDP-N-acteylglucosamine pyrophosphorylase 1, like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7.230.824
3rd Layer2.7.70.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030130001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (387 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015819001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (560 aa)
   • •• 0.930
GSVIVG00001611001
SubName- Full=Chromosome undetermined scaffold_119, whole genome shotgun sequence; (560 aa)
   • •• 0.928

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
PLN02435493 PLN02435, PLN02435, probable UDP-N-acetylglucosami 0.0
cd04193323 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl 1e-158
PTZ00339482 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph 6e-98
COG4284472 COG4284, COG4284, UDP-glucose pyrophosphorylase [C 5e-74
cd04180266 cd04180, UGPase_euk_like, Eukaryotic UGPase-like i 9e-58
pfam01704417 pfam01704, UDPGP, UTP--glucose-1-phosphate uridyly 7e-37
PLN02830 615 PLN02830, PLN02830, UDP-sugar pyrophosphorylase 4e-25
cd06424315 cd06424, UGGPase, UGGPase catalyzes the synthesis 3e-22
cd00897300 cd00897, UGPase_euk, Eukaryotic UGPase catalyses t 1e-06
>gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine pyrophosphorylase Back     alignment and domain information 
 Score =  797 bits (2060), Expect = 0.0
 Identities = 334/369 (90%), Positives = 355/369 (96%), Gaps = 1/369 (0%)

Query: 10  QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
           QGTRLGSSDPKGC NIGLPSGKSLFQLQAERILCVQRLAAQ +SEG G     IHWYIMT
Sbjct: 126 QGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPG-RPVTIHWYIMT 184

Query: 70  SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
           SPFTD+ATRK+FE HKYFGLE+DQVTFFQQGT+PCVSKDG+FIMETP+KVAKAPDGNGGV
Sbjct: 185 SPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGV 244

Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
           Y+ALKSS+LLEDMA+RGIKY+DCYGVDNALVRVADPTFLGYFIDKGV++ AKVVRKAYPQ
Sbjct: 245 YAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ 304

Query: 190 EKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249
           EKVGVFVRRGKGGPLTVVEYSELD ++ASAINQ+TGRLR+CWSNVCLHMFTLDFLNQVAN
Sbjct: 305 EKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVAN 364

Query: 250 GLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 309
           GLEKDS+YHLAEKKIPSIHG T+G KLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG
Sbjct: 365 GLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 424

Query: 310 SNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT 369
           SNFDTP+SARLLVLRLHTRWV+AAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT
Sbjct: 425 SNFDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT 484

Query: 370 FHAPCEIGF 378
           FHAPCEI F
Sbjct: 485 FHAPCEISF 493

Length = 493
>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information
>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information
>gnl|CDD|201928 pfam01704, UDPGP, UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>gnl|CDD|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase Back     alignment and domain information
>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of UDP-Glucose Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
PLN02435493 probable UDP-N-acetylglucosamine pyrophosphorylase 100.0
PTZ00339482 UDP-N-acetylglucosamine pyrophosphorylase; Provisi 100.0
KOG2388477 consensus UDP-N-acetylglucosamine pyrophosphorylas 100.0
cd04193323 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala 100.0
cd00897300 UGPase_euk Eukaryotic UGPase catalyses the synthes 100.0
cd06424315 UGGPase UGGPase catalyzes the synthesis of UDP-Glu 100.0
PLN02474469 UTP--glucose-1-phosphate uridylyltransferase 100.0
PF01704420 UDPGP: UTP--glucose-1-phosphate uridylyltransferas 100.0
PLN02830615 UDP-sugar pyrophosphorylase 100.0
COG4284472 UDP-glucose pyrophosphorylase [Carbohydrate transp 100.0
cd04180266 UGPase_euk_like Eukaryotic UGPase-like includes UD 100.0
KOG2638498 consensus UDP-glucose pyrophosphorylase [Carbohydr 100.0
COG1207 460 GlmU N-acetylglucosamine-1-phosphate uridyltransfe 97.46
PRK14356 456 glmU bifunctional N-acetylglucosamine-1-phosphate 97.4
PRK14359 430 glmU bifunctional N-acetylglucosamine-1-phosphate 97.3
cd02540229 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU 97.19
PRK14357 448 glmU bifunctional N-acetylglucosamine-1-phosphate 97.1
cd04189236 G1P_TT_long G1P_TT_long represents the long form o 97.06
cd04197217 eIF-2B_epsilon_N The N-terminal domain of epsilon 96.96
TIGR01207286 rmlA glucose-1-phosphate thymidylyltransferase, sh 96.89
cd04181217 NTP_transferase NTP_transferases catalyze the tran 96.85
PRK15480292 glucose-1-phosphate thymidylyltransferase RfbA; Pr 96.76
PF00483248 NTP_transferase: Nucleotidyl transferase This Pros 96.75
PRK14360 450 glmU bifunctional N-acetylglucosamine-1-phosphate 96.74
cd06915223 NTP_transferase_WcbM_like WcbM_like is a subfamily 96.69
PRK05293380 glgC glucose-1-phosphate adenylyltransferase; Prov 96.68
cd06428257 M1P_guanylylT_A_like_N N-terminal domain of M1P_gu 96.66
cd02538240 G1P_TT_short G1P_TT_short is the short form of glu 96.63
TIGR02092369 glgD glucose-1-phosphate adenylyltransferase, GlgD 96.58
TIGR01208353 rmlA_long glucose-1-phosphate thymidylylransferase 96.48
cd06422221 NTP_transferase_like_1 NTP_transferase_like_1 is a 96.48
PRK14352 482 glmU bifunctional N-acetylglucosamine-1-phosphate 96.36
cd06425233 M1P_guanylylT_B_like_N N-terminal domain of the M1 96.32
cd02509274 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf 96.14
PRK14358 481 glmU bifunctional N-acetylglucosamine-1-phosphate 95.98
PRK00844407 glgC glucose-1-phosphate adenylyltransferase; Prov 95.87
cd02524253 G1P_cytidylyltransferase G1P_cytidylyltransferase 95.87
cd06426220 NTP_transferase_like_2 NTP_trnasferase_like_2 is a 95.86
PRK14353 446 glmU bifunctional N-acetylglucosamine-1-phosphate 95.78
PRK05450245 3-deoxy-manno-octulosonate cytidylyltransferase; P 95.62
PRK14355 459 glmU bifunctional N-acetylglucosamine-1-phosphate 95.59
TIGR02623254 G1P_cyt_trans glucose-1-phosphate cytidylyltransfe 95.57
cd02508200 ADP_Glucose_PP ADP-glucose pyrophosphorylase is in 95.54
TIGR01105297 galF UTP-glucose-1-phosphate uridylyltransferase, 95.47
PLN02241436 glucose-1-phosphate adenylyltransferase 95.41
cd02523229 PC_cytidylyltransferase Phosphocholine cytidylyltr 95.07
PRK02862429 glgC glucose-1-phosphate adenylyltransferase; Prov 95.04
PRK00725425 glgC glucose-1-phosphate adenylyltransferase; Prov 94.96
TIGR01173 451 glmU UDP-N-acetylglucosamine diphosphorylase/gluco 94.77
PRK10122297 GalU regulator GalF; Provisional 94.58
TIGR02091361 glgC glucose-1-phosphate adenylyltransferase. This 94.46
PRK14354 458 glmU bifunctional N-acetylglucosamine-1-phosphate 94.41
cd04198214 eIF-2B_gamma_N The N-terminal domain of gamma subu 94.23
COG1213239 Predicted sugar nucleotidyltransferases [Cell enve 94.2
TIGR01099260 galU UTP-glucose-1-phosphate uridylyltransferase. 93.62
TIGR01479 468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 93.28
cd02517239 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th 92.81
PLN02917293 CMP-KDO synthetase 91.79
PRK09451 456 glmU bifunctional N-acetylglucosamine-1-phosphate 91.66
PF14134513 DUF4301: Domain of unknown function (DUF4301) 91.36
PF12804160 NTP_transf_3: MobA-like NTP transferase domain; PD 91.35
PRK13389302 UTP--glucose-1-phosphate uridylyltransferase subun 91.06
cd02541267 UGPase_prokaryotic Prokaryotic UGPase catalyses th 90.42
COG1208358 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas 90.07
cd02513223 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- 89.97
PRK13385230 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 89.02
TIGR00454183 conserved hypothetical protein TIGR00454. At this 88.43
cd02507216 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma 87.39
KOG1460407 consensus GDP-mannose pyrophosphorylase [Carbohydr 86.74
COG1209286 RfbA dTDP-glucose pyrophosphorylase [Cell envelope 86.68
PLN02728252 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 86.46
COG0746192 MobA Molybdopterin-guanine dinucleotide biosynthes 85.28
PRK13368238 3-deoxy-manno-octulosonate cytidylyltransferase; P 84.79
PF01128221 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly 84.57
cd04183231 GT2_BcE_like GT2_BcbE_like is likely involved in t 84.56
TIGR03310188 matur_ygfJ molybdenum hydroxylase accessory protei 83.36
KOG1322371 consensus GDP-mannose pyrophosphorylase/mannose-1- 81.91
cd04182186 GT_2_like_f GT_2_like_f is a subfamily of the glyc 81.51
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase Back     alignment and domain information 
Probab=100.00  E-value=4.5e-111  Score=854.82  Aligned_cols=368  Identities=90%  Similarity=1.453  Sum_probs=346.2

Q ss_pred             ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059           10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL   89 (378)
Q Consensus        10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl   89 (378)
                      ||||||+++|||||||++|++|||||+++|||+++|++|.++.+.. ++++++||||||||+.||++|++||++|+|||+
T Consensus       126 qGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~-~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl  204 (493)
T PLN02435        126 QGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEG-PGRPVTIHWYIMTSPFTDEATRKFFESHKYFGL  204 (493)
T ss_pred             cccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccc-cCCCCceeEEEeCCcchhHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999998765321 136799999999999999999999999999999


Q ss_pred             CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059           90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG  169 (378)
Q Consensus        90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG  169 (378)
                      +++||+||+|+++||++.+|+++++++++++|+|+||||+|.||++||+|++|+++|++|+||+||||+|++++||.|||
T Consensus       205 ~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG  284 (493)
T PLN02435        205 EADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLG  284 (493)
T ss_pred             CccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHhh
Q 017059          170 YFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN  249 (378)
Q Consensus       170 ~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~~  249 (378)
                      |++.+++|+++||++|+.|+|+||++|+.+++|+++||||+|+++++++..++++|.+.|.+|||||||||++||+++++
T Consensus       285 ~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~  364 (493)
T PLN02435        285 YFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVAN  364 (493)
T ss_pred             HHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHH
Confidence            99999999999999999999999999997568999999999999999887776679999999999999999999999987


Q ss_pred             ccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHHHHHHHH
Q 017059          250 GLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRW  329 (378)
Q Consensus       250 ~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~~~~  329 (378)
                      ..+..+|||+|+|||||+|+.+||||||+||||+|++++++.+++|+|++|||||||++|...|||+|||++|+++|+||
T Consensus       365 ~~~~~l~~H~A~Kkip~~~~~~ngiK~E~FiFDvf~~a~~~~~~eV~R~~EFaPlKN~~g~~~Dsp~tar~~l~~~~~~w  444 (493)
T PLN02435        365 GLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPESARLLVLRLHTRW  444 (493)
T ss_pred             hhhhcCCceeeccccCccCCCcceEEeeeeeecchhhcCceEEEEEchhhccCcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            65567999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             HHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCCccccC
Q 017059          330 VIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF  378 (378)
Q Consensus       330 l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~~~  378 (378)
                      |++||+.+.++.+.....|||||++||+||||+.+++|++|..|.+++|
T Consensus       445 l~~aG~~~~~~~~~~~~~vEisP~~sY~gE~L~~~~~~~~~~~~~~~~~  493 (493)
T PLN02435        445 VVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEISF  493 (493)
T ss_pred             HHHcCCEecCCccccCCcEEeCCceeeCCCCchhhcCCCeecCceeecC
Confidence            9999998754332123469999999999999999999999999999876

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose Back     alignment and domain information
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 Back     alignment and domain information
>PLN02830 UDP-sugar pyrophosphorylase Back     alignment and domain information
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU Back     alignment and domain information
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form Back     alignment and domain information
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars Back     alignment and domain information
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional Back     alignment and domain information
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry Back     alignment and domain information
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases Back     alignment and domain information
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase Back     alignment and domain information
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit Back     alignment and domain information
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form Back     alignment and domain information
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family Back     alignment and domain information
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins Back     alignment and domain information
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose Back     alignment and domain information
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose Back     alignment and domain information
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family Back     alignment and domain information
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase Back     alignment and domain information
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch Back     alignment and domain information
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit Back     alignment and domain information
>PLN02241 glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline Back     alignment and domain information
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase Back     alignment and domain information
>PRK10122 GalU regulator GalF; Provisional Back     alignment and domain information
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide Back     alignment and domain information
>PLN02917 CMP-KDO synthetase Back     alignment and domain information
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PF14134 DUF4301: Domain of unknown function (DUF4301) Back     alignment and domain information
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B Back     alignment and domain information
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional Back     alignment and domain information
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose Back     alignment and domain information
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety Back     alignment and domain information
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>TIGR00454 conserved hypothetical protein TIGR00454 Back     alignment and domain information
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity Back     alignment and domain information
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Back     alignment and domain information
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] Back     alignment and domain information
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] Back     alignment and domain information
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule Back     alignment and domain information
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family Back     alignment and domain information
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
1jv1_A505 Crystal Structure Of Human Agx1 Complexed With Udpg 1e-82
1jvd_A522 Crystal Structure Of Human Agx2 Complexed With Udpg 1e-81
1vm8_A534 Crystal Structure Of Udp-N-Acetylglucosamine Pyroph 3e-79
2yqc_A486 Crystal Structure Of Uridine-Diphospho-N-Acetylgluc 6e-73
3oc9_A405 Crystal Structure Of Putative Udp-N-Acetylglucosami 2e-49
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac Length = 505 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/393 (44%), Positives = 233/393 (59%), Gaps = 38/393 (9%)
Query: 10  QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
           QGTRLG + PKG  ++GLPS K+LFQ+QAERIL +Q++A     E        I WYIMT
Sbjct: 112 QGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVA-----EKYYGNKCIIPWYIMT 166
Query: 70  SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
           S  T ++T+++F  HKYFGL+ + V FFQQG +P +S DG+ I+E   KV+ APDGNGG+
Sbjct: 167 SGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGL 226
Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
           Y AL +  ++EDM  RGI  I  Y VDN LV+VADP F+G+ I KG   GAKVV K  P 
Sbjct: 227 YRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPT 286
Query: 190 EXXXXXXXXXXXXPLTVVEYSELDPSLASAINQET-GRLRFCWSNVCLHMFTLDFLNQVA 248
           E               VVEYSE+  SLA+A  + + GRL F   N+  H FT+ FL  V 
Sbjct: 287 EPVGVVCRVDGV--YQVVEYSEI--SLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVV 342
Query: 249 NGLEKDSVYHLAEKKIPSI--HGQTV------GFKLEQFIFDAFPYAPSTALFEVLREEE 300
           N  E    +H+A+KKIP +   GQ +      G K+E+F+FD F +A    ++EVLRE+E
Sbjct: 343 NVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDE 402
Query: 301 FAPVKNANGSN-FDTPDSARLLVLRLHTRWVIAAGGFL----------------THSVPL 343
           F+P+KNA+  N  D P +AR  ++ LH  WV+ AGG                   + VP+
Sbjct: 403 FSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPI 462
Query: 344 YATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 376
                E+SPL SYAGE LE+    + FHAP  I
Sbjct: 463 QC---EISPLISYAGEGLESYVADKEFHAPLII 492
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac Length = 522 Back     alignment and structure
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A Resolution Length = 534 Back     alignment and structure
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, In The Apo-Like Form Length = 486 Back     alignment and structure
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine Pyrophosphorylase From Entamoeba Histolytica Length = 405 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
2yqc_A486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 1e-130
1jv1_A505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 1e-128
3oc9_A405 UDP-N-acetylglucosamine pyrophosphorylase; structu 1e-126
3gue_A484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 1e-82
3r3i_A528 UTP--glucose-1-phosphate uridylyltransferase; ross 1e-82
3ogz_A 630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 8e-80
2icy_A469 Probable UTP-glucose-1-phosphate uridylyltransfera 7e-78
2oeg_A505 UTP-glucose-1-phosphate uridylyltransferase 2, put 1e-77
2i5k_A488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 3e-77
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486 Back     alignment and structure
 Score =  381 bits (978), Expect = e-130
 Identities = 161/383 (42%), Positives = 224/383 (58%), Gaps = 25/383 (6%)

Query: 10  QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
           QGTRLGSS PKGC NI LPS KSLFQ+QAE+IL +++LA Q            I+WYIMT
Sbjct: 113 QGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPI---INWYIMT 169

Query: 70  SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDG-RFIMETPYKVAKAPDGNGG 128
           S  T +AT  +F  + YFGL S QV FF QGT+PC +  G + ++E    + ++PDGNGG
Sbjct: 170 SGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGG 229

Query: 129 VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYP 188
           +Y ALK + +L+D+ ++GIK+I  Y VDN LV+VADP F+G+ I K      KVVRK   
Sbjct: 230 LYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDA 289

Query: 189 QEKVGVFVRRGKGGPLTVVEYSELDPSLASAIN-QETGRLRFCWSNVCLHMFTLDFLNQV 247
            E VG+ V         V+EYSE+   LA+  + Q++ +L    +N+  H ++++FLN++
Sbjct: 290 NESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKM 349

Query: 248 AN---GLEKDSVYHLAEKKIPSIHGQT---------VGFKLEQFIFDAFPYAPST--ALF 293
                  +K   +H+A+KKIPS++ +           G KLEQFIFD FP          
Sbjct: 350 IPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCL 409

Query: 294 EVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPL 353
           EV R +EF+P+KNA+G+  DTP + R   L   ++WVI  GG + +        VEV   
Sbjct: 410 EVDRLDEFSPLKNADGAKNDTPTTCRNHYLERSSKWVIQNGGVIDNQG-----LVEVDSK 464

Query: 354 CSYAGENLEAICRGRTFHAPCEI 376
            SY GE LE +  G+ F     I
Sbjct: 465 TSYGGEGLEFV-NGKHFKNGDII 486
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505 Back     alignment and structure
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405 Back     alignment and structure
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484 Back     alignment and structure
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528 Back     alignment and structure
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630 Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505 Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
3oc9_A405 UDP-N-acetylglucosamine pyrophosphorylase; structu 100.0
2yqc_A486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 100.0
1jv1_A505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 100.0
3gue_A484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 100.0
3ogz_A 630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 100.0
3r3i_A528 UTP--glucose-1-phosphate uridylyltransferase; ross 100.0
2oeg_A505 UTP-glucose-1-phosphate uridylyltransferase 2, put 100.0
2i5k_A488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 100.0
2icy_A469 Probable UTP-glucose-1-phosphate uridylyltransfera 100.0
3st8_A 501 Bifunctional protein GLMU; acetyltransferase, pyro 97.76
4ecm_A269 Glucose-1-phosphate thymidylyltransferase; HET: DA 97.0
3oam_A252 3-deoxy-manno-octulosonate cytidylyltransferase; c 96.95
1fxo_A293 Glucose-1-phosphate thymidylyltransferase; rhamnos 96.54
1mc3_A296 Glucose-1-phosphate thymidylyltransferase; glucose 96.48
1lvw_A295 Glucose-1-phosphate thymidylyltransferase; protein 96.39
3tqd_A256 3-deoxy-manno-octulosonate cytidylyltransferase; c 95.89
4fce_A 459 Bifunctional protein GLMU; GLMU. csgid, niaid, str 95.82
3brk_X420 Glucose-1-phosphate adenylyltransferase; ADP-gluco 95.6
2qh5_A308 PMI, ALGA, mannose-6-phosphate isomerase; structur 95.49
3k8d_A264 3-deoxy-manno-octulosonate cytidylyltransferase; K 95.29
1hm9_A 468 GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr 95.2
1yp2_A451 Glucose-1-phosphate adenylyltransferase small subu 95.2
3juk_A281 UDP-glucose pyrophosphorylase (GALU); transfer; HE 95.07
2v0h_A 456 Bifunctional protein GLMU; cell WALL, magnesium, c 95.02
3pnn_A303 Conserved domain protein; structural genomics, PSI 94.55
3f1c_A246 Putative 2-C-methyl-D-erythritol 4-phosphate cytid 94.26
1ezi_A228 CMP-N-acetylneuraminic acid synthetase; homodimer, 93.49
1h7e_A245 3-deoxy-manno-octulosonate cytidylyltransferase; n 93.05
1qwj_A229 Cytidine monophospho-N-acetylneuraminic acid synth 92.69
1vic_A262 3-deoxy-manno-octulosonate cytidylyltransferase; s 92.31
2vsh_A236 TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly 92.13
2x65_A336 Mannose-1-phosphate guanylyltransferase; nucleotid 91.86
4fcu_A253 3-deoxy-manno-octulosonate cytidylyltransferase; s 91.74
2e3d_A302 UTP--glucose-1-phosphate uridylyltransferase; UDP- 90.4
3q80_A231 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; 89.75
2xwl_A223 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; 88.57
3rsb_A196 Adenosylcobinamide-phosphate guanylyltransferase; 87.07
3d5n_A197 Q97W15_sulso; NESG, SSR125, structural genomics, P 86.17
1tzf_A259 Glucose-1-phosphate cytidylyltransferase; nucleoti 86.07
2waw_A199 MOBA relate protein; unknown function; HET: PGE; 1 85.95
1vpa_A234 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; 85.1
3ngw_A208 Molybdopterin-guanine dinucleotide biosynthesis P 85.02
2yc3_A228 2-C-methyl-D-erythritol 4-phosphate cytidylyltran 84.44
1i52_A236 4-diphosphocytidyl-2-C-methylerythritol synthase; 84.06
2wee_A197 MOBA-related protein; unknown function; 1.65A {Myc 81.97
1vgw_A231 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; 81.32
1e5k_A201 Molybdopterin-guanine dinucleotide biosynthesis pr 81.28
2y6p_A234 3-deoxy-manno-octulosonate cytidylyltransferase; l 81.12
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=9.4e-102  Score=773.73  Aligned_cols=351  Identities=34%  Similarity=0.594  Sum_probs=331.4

Q ss_pred             ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhh-ccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059           10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQV-TSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG   88 (378)
Q Consensus        10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~-~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg   88 (378)
                      ||||||+++||+|+||+++++|||||++++||+++|+++.++ ++     .++.|||+||||+.||++|++||++|+|||
T Consensus        45 ~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~-----~~~~Ip~~IMtS~~t~e~t~~~f~~~~~fG  119 (405)
T 3oc9_A           45 QGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQ-----KNVMIHWFLMTNEETIEEINNYFKEHQYFG  119 (405)
T ss_dssp             BCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCC-----SCCCCEEEEEECTTTHHHHHHHHHHTGGGG
T ss_pred             CcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccc-----cCCCCCEEEEeCCccHHHHHHHHHhCcccC
Confidence            999999999999999999999999999999999999998775 32     468899999999999999999999999999


Q ss_pred             CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059           89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL  168 (378)
Q Consensus        89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l  168 (378)
                      +++++|++|+|+++||++.+|+++++++++++|+|+||||+|.+|+++|+||+|.++|++|++|+|+||+|++++||.|+
T Consensus       120 l~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~l  199 (405)
T 3oc9_A          120 LSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMI  199 (405)
T ss_dssp             SCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHH
T ss_pred             CCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHh
Q 017059          169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA  248 (378)
Q Consensus       169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~  248 (378)
                      ||++++++++++||++|+.|+|++|+||++  ||+++||||+|+|++ ++.. ..+|.+.|+++||+||+|+++||++++
T Consensus       200 g~~~~~~~d~~~kvv~k~~~dek~Gvl~~~--dg~~~vvEysei~~e-~e~~-~~~g~l~fn~~Ni~~h~fs~~fL~~i~  275 (405)
T 3oc9_A          200 GYMDLLQSEICIKIVKKGFKEEKVGVLVKE--QERIKVVEYTELTDE-LNKQ-LSNGEFIYNCGHISINGYSTSFLEKAA  275 (405)
T ss_dssp             HHHHHTTCSEEEEEEECCSTTCSCCEEEEE--TTEEEEECGGGCCTT-TTCB-CTTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred             HHHHHcCCCEEEEEEECCCCCCccceEEEE--CCeeEEEEEeeCCHH-Hhhc-CCCCceeeccceeEeeecCHHHHHHhh
Confidence            999999999999999999999999999997  799999999999999 5543 458999999999999999999999988


Q ss_pred             hccccCccceeeecccCCCCC--------CcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHH
Q 017059          249 NGLEKDSVYHLAEKKIPSIHG--------QTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARL  320 (378)
Q Consensus       249 ~~~~~~lp~h~a~Kkip~~~~--------~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~  320 (378)
                         +..||||+|+|||||+|+        ++||+|||+||||+|++++++.+++|+|++|||||||++|...|||+|||+
T Consensus       276 ---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~~~~~~~eV~R~~eF~PlKn~~g~~~dsp~tar~  352 (405)
T 3oc9_A          276 ---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEFSALKNSLNESFDNVNTVKR  352 (405)
T ss_dssp             ---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSCEEEEECCHHHHCCBCCCCTTSSSSSHHHHHH
T ss_pred             ---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhccceEEEEEChHhcccceecCCCCCCCCHHHHHH
Confidence               347999999999999872        379999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCCccc
Q 017059          321 LVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEI  376 (378)
Q Consensus       321 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~  376 (378)
                      |++++|++||+++|+++.++.+   ..|||||++||+||||++ ++|++|+.|.++
T Consensus       353 ~l~~~~~~wl~~ag~~~~~~~~---~~~Eispl~sy~ge~l~~-~~~~~~~~p~~~  404 (405)
T 3oc9_A          353 DWYRLNIYYLKKAGAIVDDSKS---PICEISFRKSFEEEGLKE-FKGKTIQLPFIL  404 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSSC---CCEEECTTTCSSSGGGGG-GTTCEEESCEEE
T ss_pred             HHHHHHHHHHHHCCCEEcCCCC---ccEEeCcccccCccCccc-cCCcEecCcccc
Confidence            9999999999999999975432   469999999999999999 699999999875
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Back     alignment and structure
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Back     alignment and structure
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Back     alignment and structure
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Back     alignment and structure
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Back     alignment and structure
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Back     alignment and structure
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 Back     alignment and structure
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Back     alignment and structure
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Back     alignment and structure
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Back     alignment and structure
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 Back     alignment and structure
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Back     alignment and structure
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Back     alignment and structure
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} Back     alignment and structure
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* Back     alignment and structure
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Back     alignment and structure
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Back     alignment and structure
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Back     alignment and structure
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Back     alignment and structure
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Back     alignment and structure
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 Back     alignment and structure
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Back     alignment and structure
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Back     alignment and structure
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Back     alignment and structure
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Back     alignment and structure
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Back     alignment and structure
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* Back     alignment and structure
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Back     alignment and structure
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Back     alignment and structure
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* Back     alignment and structure
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Back     alignment and structure
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Back     alignment and structure
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Back     alignment and structure
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Back     alignment and structure
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Back     alignment and structure
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Back     alignment and structure
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Back     alignment and structure
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Back     alignment and structure
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Back     alignment and structure
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Back     alignment and structure
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Back     alignment and structure
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Back     alignment and structure
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d1jv1a_501 c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor 1e-143
d2icya2378 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 1e-87
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

 Score =  412 bits (1061), Expect = e-143
 Identities = 175/389 (44%), Positives = 229/389 (58%), Gaps = 30/389 (7%)

Query: 10  QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
           QGTRLG + PKG  ++GLPS K+LFQ+QAERIL +Q++A +            I WYIMT
Sbjct: 112 QGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKC-----IIPWYIMT 166

Query: 70  SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
           S  T ++T+++F  HKYFGL+ + V FFQQG +P +S DG+ I+E   KV+ APDGNGG+
Sbjct: 167 SGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGL 226

Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
           Y AL +  ++EDM  RGI  I  Y VDN LV+VADP F+G+ I KG   GAKVV K  P 
Sbjct: 227 YRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPT 286

Query: 190 EKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249
           E VGV  R    G   VVEYSE+  + A       GRL F   N+  H FT+ FL  V N
Sbjct: 287 EPVGVVCR--VDGVYQVVEYSEISLATAQK-RSSDGRLLFNAGNIANHFFTVPFLRDVVN 343

Query: 250 GLEKDSVYHLAEKKIPSIH--GQTV------GFKLEQFIFDAFPYAPSTALFEVLREEEF 301
             E    +H+A+KKIP +   GQ +      G K+E+F+FD F +A    ++EVLRE+EF
Sbjct: 344 VYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEF 403

Query: 302 APVKNANGSNF-DTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATG------------- 347
           +P+KNA+  N  D P +AR  ++ LH  WV+ AGG                         
Sbjct: 404 SPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQ 463

Query: 348 VEVSPLCSYAGENLEAICRGRTFHAPCEI 376
            E+SPL SYAGE LE+    + FHAP  I
Sbjct: 464 CEISPLISYAGEGLESYVADKEFHAPLII 492
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1jv1a_501 UDP-N-acetylglucosamine pyrophosphorylase {Human ( 100.0
d2icya2378 UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c 100.0
d1yp2a2307 Glucose-1-phosphate adenylyltransferase small subu 97.17
d1g97a2250 N-acetylglucosamine 1-phosphate uridyltransferase 97.07
d1fxoa_292 RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} 96.8
d1mc3a_291 RffH {Escherichia coli [TaxId: 562]} 96.73
d1lvwa_295 RmlA (RfbA) {Archaeon Methanobacterium thermoautot 96.37
d2oi6a2248 N-acetylglucosamine 1-phosphate uridyltransferase 95.5
d2cu2a2268 Putative mannose-1-phosphate guanylyl transferase 94.73
d1vpaa_221 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 94.58
d1tzfa_259 Glucose-1-phosphate cytidylyltransferase RfbF {Sal 94.25
d1w77a1226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 91.51
d1i52a_225 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 91.43
d1jyka_229 CTP:phosphocholine cytidylytransferase LicC {Strep 89.48
d1vgwa_226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 88.35
d1w55a1205 IspD/IspF bifunctional enzyme, CDP-me synthase dom 86.55
d1e5ka_188 Molybdenum cofactor biosynthesis protein MobA {Esc 84.91
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=100.00  E-value=1.7e-103  Score=804.99  Aligned_cols=361  Identities=48%  Similarity=0.783  Sum_probs=339.4

Q ss_pred             cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059            9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG   88 (378)
Q Consensus         9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg   88 (378)
                      +||||||+++|||++||++++++||||++++||++++++|.++.+     +++.|||+||||+.||++|++||++|+|||
T Consensus       111 G~GTRLG~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~-----~~~~iPl~IMtS~~T~~~t~~~l~~~~~FG  185 (501)
T d1jv1a_         111 GQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYG-----NKCIIPWYIMTSGRTMESTKEFFTKHKYFG  185 (501)
T ss_dssp             CCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHS-----SCCCCCEEEEECTTTHHHHHHHHHHTGGGG
T ss_pred             CccccCCCCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcC-----CCCCceEEEECChhHhHHHHHHHHhccccC
Confidence            399999999999999999999999999999999999999988764     678999999999999999999999999999


Q ss_pred             CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059           89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL  168 (378)
Q Consensus        89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l  168 (378)
                      +++++|+||+|+++||++.+|+++++++++++|+|+||||+|.+|+++|+|++|.++|++|++|+||||+|++++||.||
T Consensus       186 l~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~Dp~~l  265 (501)
T d1jv1a_         186 LKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFI  265 (501)
T ss_dssp             SCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHH
T ss_pred             CCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccccccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHh
Q 017059          169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA  248 (378)
Q Consensus       169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~  248 (378)
                      ||++.+++++++||++|+.|+|+||++|++  ||+++||||+|+|++++++++ ++|++.|++||||||||+++||++++
T Consensus       266 G~~~~~~~~~~~kvv~k~~~~e~~G~l~~~--dg~~~vvEysel~~~~~~~~~-~~g~l~f~~~Ni~~~~fsl~fl~~~~  342 (501)
T d1jv1a_         266 GFCIQKGADCGAKVVEKTNPTEPVGVVCRV--DGVYQVVEYSEISLATAQKRS-SDGRLLFNAGNIANHFFTVPFLRDVV  342 (501)
T ss_dssp             HHHHHTTCSEEEEEEECCSTTCSCCEEEEE--TTEEEEECGGGSCHHHHHCBC-TTSSBSSCEEEEEEEEEEHHHHHHHH
T ss_pred             HHHHhcccceeEEEEEcCCCCcccceEEEE--CCeEEEEEeccCCHHHHhhcc-CCCcccccccceeheeeEHHHHHHHH
Confidence            999999999999999999999999999998  799999999999999988765 68999999999999999999999999


Q ss_pred             hccccCccceeeecccCCCC--------CCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCC-CCCCHHHHH
Q 017059          249 NGLEKDSVYHLAEKKIPSIH--------GQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGS-NFDTPDSAR  319 (378)
Q Consensus       249 ~~~~~~lp~h~a~Kkip~~~--------~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~-~~dsp~ta~  319 (378)
                      +.....||||+|+|||||+|        +++||+|||+||||+|++++++.+++|+|++|||||||++|. +.|||+|||
T Consensus       343 ~~~~~~l~~hva~Kki~~~d~~~~~~~p~~~n~iklE~fifD~~~~~~~~~~~~V~R~~eFaPvKN~~~~~~~dsp~ta~  422 (501)
T d1jv1a_         343 NVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTAR  422 (501)
T ss_dssp             HTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSSEEEEEECHHHHCCBCCSCTTSSSSSSHHHHH
T ss_pred             HhcccCCCceEeccccCccCCCCCcccCCCCcchhHHHHHHHHHHhccceEEEEEchhhccccccCCCCCCCCCCHHHHH
Confidence            86666799999999999987        357899999999999999999999999999999999999885 679999999


Q ss_pred             HHHHHHHHHHHHHcCCeeccCCCC-------------ccCcEEecccceeeCCCchhhhcCcEecCCcccc
Q 017059          320 LLVLRLHTRWVIAAGGFLTHSVPL-------------YATGVEVSPLCSYAGENLEAICRGRTFHAPCEIG  377 (378)
Q Consensus       320 ~~l~~~~~~~l~~~g~~~~~~~~~-------------~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~~  377 (378)
                      ++++++|++||++||+++.++...             ....|||||++||+||||+.+++|++|+.|++|.
T Consensus       423 ~~l~~~~~~wl~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~EIsp~~sy~GEgL~~~~~~~~~~~p~~l~  493 (501)
T d1jv1a_         423 HALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPLIID  493 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEBCTTCCBCCSSCCCCSTTCCCCCEEECTTTCSSSCSCHHHHTTCEECSSEEEE
T ss_pred             HHHHHHhHHHHHHcCCeEecccccccccccccccccCCCceEEECCcccccccCHHHhhCCCEecCceEEc
Confidence            999999999999999998643211             0134999999999999999999999999999874
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Back     information, alignment and structure
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure