Citrus Sinensis ID: 017105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKEIIYGTYFFTITVLLAINLELI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHccccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDDKRKEMEPLHQALGKlrttnnarsggicsseEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRqlsrdgrirnpdekplvvaetsvpsepeivakpnvkqskgdsksasqkdtlptQKVQKEAAKKetedtadfeipvvekpasekkvDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKEIIYGTYFFTITVLLAINLELI
Flexible Loop (DISEMBL)
MDDKRKEMEPLHqalgklrttnnarsggicsseeELDDLIRSLQYRIQHeiiplseekqILREIKQLEGTREKVMANAAMRAKIqesmgkkediqDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKElrkqrdegNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLwnnnkafrDDYEKRLLQSLDmrqlsrdgrirnpdekplvvaetsvpsepeivakpnvkqskgdsksasqkdtlptqkvqkeaakketedtadfeipvvekpasekkvdeaklremkkeedrakaregmerkrkkeeaKVAKAAlraekqrkeiiygtyFFTITVLLAINLELI
Low Complexity Region (SEG)
MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEEDrakaregmerkrkkeeakvakaalraekQRKEIIYGTYFFTITVLLAINLELI
Disordered region (IsUnstruct)
************************************DDLIRSLQYRIQHEIIPLSEEKQILR***************************************************AVWAKISHLEGKVKAL*********************************EGNAYFFQYRALLNEAKAMSVK************EVEKYMTLWNNNKAFRDDYE******************************************************************************************************************************************KEIIYGTYFFTITVLLAINLE**
Disordered Region (DISOPRED)
*************************************DLIRSLQYRIQHEIIPLSEEKQILREI***************************************************************************************ANIKELRKQRDEGNAYFFQ************************NSEVEKYMTLWNNNKAFRD*Y********************************************************************************************************************************************EIIYGTYFFTITVLLAINLELI
Disordered Region (DISEMBL)
*********PLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQ********IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKP***********************************ADFEIPVVEKPASEKKVDEAKLR******************************LRAEKQRKEIIYGTYFFTITVLLAINLELI
Disordered Region (DISPRO)
MDDKRKEMEPLHQALGKLRT********ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAE*************************************************************************K**EDRAKAREGMERKR********K*ALRAEKQRKEIIYGTYFFTITVLLAINLELI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSExxxxxxxxxxxxxxxxxxxxxAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIIYGTYFFTITVLLAINLELI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
O23144	612	Proton pump-interactor 1	yes	no	0.885	0.545	0.559	2e-96
B3H4K7	589	Proton pump-interactor 2	no	no	0.880	0.563	0.367	4e-40
P0DKC0	576	Proton pump-interactor 3B	no	no	0.893	0.585	0.356	9e-38
P0DKC1	576	Proton pump-interactor 3A	no	no	0.893	0.585	0.356	9e-38
Q8VZN4	439	Proton pump-interactor 4	no	no	0.591	0.507	0.369	5e-32

>sp|O23144|PPI1_ARATH Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/345 (55%), Positives = 257/345 (74%), Gaps = 11/345 (3%)

Query: 1   MDDKRKEMEPLHQALGKLRTTN--NARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEK 58
            D+KRKEMEPL QALGKLR+ +  +AR   ICSSEEEL+ +I S QYRIQHE IPL+EEK
Sbjct: 145 FDEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEELNSMIYSYQYRIQHESIPLTEEK 204

Query: 59  QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAK 118
           QIL+EI+ LEGTR+KV+ANAAMRAKI+ESMG+K+DIQ QVKLMG+ LDGVKKE QA+ A+
Sbjct: 205 QILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKERQAISAR 264

Query: 119 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 178
           I+ L  K+KA  +EI  L+ E+  V+EKRDKA++NI +LR+QRDE N+ ++Q R +LN+A
Sbjct: 265 INELSEKLKATKDEITVLENELKTVSEKRDKAYSNIHDLRRQRDETNSEYYQNRTVLNKA 324

Query: 179 KAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPD 238
           + ++ +K++  L+ L+N+EVEK+++LW + K FR+DYEKR+LQSLD RQLSRDGR+RNPD
Sbjct: 325 RDLAAQKNISELEALANAEVEKFISLWCSKKNFREDYEKRILQSLDSRQLSRDGRMRNPD 384

Query: 239 EKPLVVAET----SVPSEPEIVAKPNVK-QSKGDSKSASQKDTLPTQKVQ--KEAAK-KE 290
           EKPL+  E     + PSE E+V K   K Q K +  SA + D    Q  +  K+A K K 
Sbjct: 385 EKPLIAPEAAPSKATPSETEVVPKAKAKPQPKEEPVSAPKPDATVAQNTEKAKDAVKVKN 444

Query: 291 TEDTADFEIPVVEKPASEKK-VDEAKLREMKKEEDRAKAREGMER 334
             D  D E+  + KP  E+K VD A  +EM+K+E+ AKA++ MER
Sbjct: 445 VADDDDDEVYGLGKPQKEEKPVDAATAKEMRKQEEIAKAKQAMER 489

Promotes AHA1 plasma membrane ATPase activity by binding to a site different from the 14-3-3 binding site.
Arabidopsis thaliana (taxid: 3702)

>sp|B3H4K7|PPI2_ARATH Proton pump-interactor 2 OS=Arabidopsis thaliana GN=PPI2 PE=2 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 212/362 (58%), Gaps = 30/362 (8%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
           +++K+ E + LH++L  LR +    S  +C S+EELD LI    Y+I+H  I   EE  +
Sbjct: 135 IEEKKMEFDALHESLRNLRCST---SDQLCFSKEELDHLIYIAHYQIEHGSIGFEEEDWV 191

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           L+E ++ +G    V++        ++S+ +KE   ++VK M  +L+ VKKE  A+  KI+
Sbjct: 192 LKETEKADGI---VLS--------EDSLAEKEASINRVKSMAVELNEVKKELDAITWKIN 240

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
           HL  KV      +  L  +   + E+RD+++  IK LR QRD+G A F+Q   ++ +A+ 
Sbjct: 241 HLSDKVGKSQNNLRVLDVKKAHILEERDRSYERIKMLRIQRDKGKAAFYQSLPVMRKARE 300

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++   +V+ L+  ++SE +++MT WN++KAFRDDY KR+  SL  RQL++DGRI++P+ +
Sbjct: 301 LAASGNVRDLEVFASSEADRFMTQWNDDKAFRDDYVKRISPSLCERQLNQDGRIKDPEVQ 360

Query: 241 PLVVAETSVPSE-PEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKK---------E 290
             VV E  VP +  E V + N    +  S ++SQ  ++ T K +KE  KK         E
Sbjct: 361 --VVWEKKVPVKGGEKVHETN---REDSSSNSSQYGSVITDKRKKETRKKAMDFNRSSAE 415

Query: 291 TEDTADFEIPVVEKPASEKKVDEAK-LREMKKEEDRAKAREGMERKRKKEEAKVAKAALR 349
             D  D E  V EKP  E++  + + L+E ++EE   KAR  MERKRK +E   AKAA+R
Sbjct: 416 ESDVTDLEFSVYEKPKKEEEEVDEETLKEREREEQLEKARLAMERKRKLQEKAAAKAAIR 475

Query: 350 AE 351
           A+
Sbjct: 476 AQ 477

May regulate plasma membrane ATPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DKC0|PPI3B_ARATH Proton pump-interactor 3B OS=Arabidopsis thaliana GN=PPI3B PE=3 SV=1

 Score =  157 bits (398), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 210/370 (56%), Gaps = 33/370 (8%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
           +++K+KE + L +AL  LR T    S  +C ++EELD L    QY+I++  I L EE  +
Sbjct: 135 IEEKKKEFDTLLEALRNLRCTT---SDQLCFTKEELDHLSYIAQYQIEYGSIGLEEEDWM 191

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           L+E ++ +G                  + +KE   ++VK M  +L+ VK E  A+  KI+
Sbjct: 192 LKETEKPDGI----------------ILSEKEASINRVKSMALELNEVKNELDAITWKIN 235

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
            L  K+      I  L  E   + EKRD+ +A IK LR QRD+GNA FFQ  +++ +AK 
Sbjct: 236 DLSDKLWKSQNNIRVLDLEKAHILEKRDRFYARIKMLRIQRDKGNAAFFQSLSVMCKAKE 295

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++   +V+ L+  ++SEV+++MTLWN++KAFR+DY +R+  SL  R+L+ DGRI++ D +
Sbjct: 296 LAASGNVRELEVFASSEVDRFMTLWNDDKAFREDYVRRISHSLCERELNEDGRIKDADLQ 355

Query: 241 PLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIP 300
             +  E  VP +    ++   K ++ DS S S +D      V  +  KKET+      I 
Sbjct: 356 --IFWEKKVPVKTIKRSEKVHKMNREDSSSNSSEDG----NVITDKRKKETKSDV---IV 406

Query: 301 VVEKPASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKE---- 356
             +    E+++DE  L+E K+EE   KAR  MERKRK +E   AKAA+RA+K+ ++    
Sbjct: 407 YEKPKKKEEEIDEEALKERKREEQLEKARLVMERKRKLQEKAAAKAAIRAQKEAEKKLKA 466

Query: 357 -IIYGTYFFT 365
            I+  ++FF 
Sbjct: 467 IILSCSHFFN 476

May regulate plasma membrane ATPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DKC1|PPI3A_ARATH Proton pump-interactor 3A OS=Arabidopsis thaliana GN=PPI3A PE=3 SV=1

 Score =  157 bits (398), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 210/370 (56%), Gaps = 33/370 (8%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
           +++K+KE + L +AL  LR T    S  +C ++EELD L    QY+I++  I L EE  +
Sbjct: 135 IEEKKKEFDTLLEALRNLRCTT---SDQLCFTKEELDHLSYIAQYQIEYGSIGLEEEDWM 191

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           L+E ++ +G                  + +KE   ++VK M  +L+ VK E  A+  KI+
Sbjct: 192 LKETEKPDGI----------------ILSEKEASINRVKSMALELNEVKNELDAITWKIN 235

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
            L  K+      I  L  E   + EKRD+ +A IK LR QRD+GNA FFQ  +++ +AK 
Sbjct: 236 DLSDKLWKSQNNIRVLDLEKAHILEKRDRFYARIKMLRIQRDKGNAAFFQSLSVMCKAKE 295

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++   +V+ L+  ++SEV+++MTLWN++KAFR+DY +R+  SL  R+L+ DGRI++ D +
Sbjct: 296 LAASGNVRELEVFASSEVDRFMTLWNDDKAFREDYVRRISHSLCERELNEDGRIKDADLQ 355

Query: 241 PLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIP 300
             +  E  VP +    ++   K ++ DS S S +D      V  +  KKET+      I 
Sbjct: 356 --IFWEKKVPVKTIKRSEKVHKMNREDSSSNSSEDG----NVITDKRKKETKSDV---IV 406

Query: 301 VVEKPASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKE---- 356
             +    E+++DE  L+E K+EE   KAR  MERKRK +E   AKAA+RA+K+ ++    
Sbjct: 407 YEKPKKKEEEIDEEALKERKREEQLEKARLVMERKRKLQEKAAAKAAIRAQKEAEKKLKA 466

Query: 357 -IIYGTYFFT 365
            I+  ++FF 
Sbjct: 467 IILSCSHFFN 476

May regulate plasma membrane ATPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZN4|PPI4_ARATH Proton pump-interactor 4 OS=Arabidopsis thaliana GN=PPI4 PE=2 SV=1

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 145/252 (57%), Gaps = 29/252 (11%)

Query: 100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 159
           LM   ++ V+KE + V  +I  L  ++  +  EIE L  ++  V  +RDKA   IK LR 
Sbjct: 107 LMSMKINEVEKEQEVVRGRIYRLGERLSEIKMEIELLDVQMACVLNQRDKAVERIKFLRM 166

Query: 160 QRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRL 219
           QRD+GNA F+Q R ++ +A  ++   +V+ L+EL++SEVEK+M+ WNN+KAFRD+Y+KR+
Sbjct: 167 QRDKGNAAFYQSRVVMKKAIELAASGNVRDLEELADSEVEKFMSRWNNDKAFRDNYKKRI 226

Query: 220 LQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPT 279
           L S++ R+L  D +IR+ +                           G+  + +  +T+  
Sbjct: 227 LPSVNERKLRCDVQIRDLE---------------------------GNLDTENGNETVVK 259

Query: 280 QKVQKEAAKKETEDTADFEIPVVEKPAS-EKKVDEAKLREMKKEEDRAKAREGMERKRKK 338
           + ++ +    E E++ DF+IPV EK    EK++DE  L+E K+EE   KAR  MERKRK 
Sbjct: 260 KAIEYKRFSTE-EESDDFDIPVYEKLGKEEKEIDEETLKEKKREEQLEKARLAMERKRKL 318

Query: 339 EEAKVAKAALRA 350
            E   AKA +R 
Sbjct: 319 HEKAAAKAVIRV 330

May regulate plasma membrane ATPase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
147857052	536	hypothetical protein VITISV_007014 [Viti	0.965	0.679	0.606	1e-119
359493838	627	PREDICTED: uncharacterized protein LOC10	0.931	0.559	0.615	1e-117
224114940	619	predicted protein [Populus trichocarpa]	0.885	0.539	0.646	1e-115
224128300	616	predicted protein [Populus trichocarpa]	0.885	0.542	0.639	1e-115
449447207	639	PREDICTED: proton pump-interactor 1-like	0.949	0.560	0.593	1e-112
255586536	616	DNA double-strand break repair rad50 ATP	0.872	0.534	0.623	1e-110
356549720	616	PREDICTED: uncharacterized protein LOC10	0.877	0.537	0.593	1e-107
356517130	665	PREDICTED: uncharacterized protein LOC10	0.870	0.493	0.592	1e-107
302142999	478	unnamed protein product [Vitis vinifera]	0.745	0.587	0.672	1e-103
357452965	609	hypothetical protein MTR_2g085330 [Medic	0.880	0.545	0.581	1e-100

>gi|147857052|emb|CAN81802.1| hypothetical protein VITISV_007014 [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/384 (60%), Positives = 291/384 (75%), Gaps = 20/384 (5%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEE 57
           +D KRKEMEPL  ALGKLR+TN+A   R G +CSSEEEL+DLI+SL Y +QHE IPL+EE
Sbjct: 148 VDGKRKEMEPLQHALGKLRSTNSANRERGGTLCSSEEELNDLIQSLHYHMQHESIPLAEE 207

Query: 58  KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWA 117
           KQILREIKQLE TREKV+A AAMRAKIQ+S+G+KE IQDQVKL+G DLDGV+KE Q V A
Sbjct: 208 KQILREIKQLEATREKVIAGAAMRAKIQDSLGQKEAIQDQVKLIGVDLDGVRKEKQVVMA 267

Query: 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177
           KI  L   +K +D EI++L +E+  V+EKRDKA+  ++ LRKQRDEGNA+F+Q RALLN 
Sbjct: 268 KIKQLRDDLKGIDSEIDSLMEELKAVSEKRDKAYEGLQALRKQRDEGNAHFYQNRALLNN 327

Query: 178 AKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNP 237
           A+ ++ KKD++ L+ELS+SEVEK+M+LW++NKAFR+DYEKR+L SLD RQLSRDGR+RNP
Sbjct: 328 ARELAGKKDIKALEELSHSEVEKFMSLWSSNKAFREDYEKRILPSLDSRQLSRDGRMRNP 387

Query: 238 DEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADF 297
           DEKPLVV E   PSE E VAK  VK+SK DSK   Q DTLP+QKVQKEA  + T+     
Sbjct: 388 DEKPLVVLEAPTPSEXETVAKAPVKRSKEDSKPPPQHDTLPSQKVQKEANDRATDSGITL 447

Query: 298 E---------IPVVEK----PASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVA 344
           E         IP +EK    P+ + +VD AKL+EMK+EE+ AKA+  +ERK+K  +   A
Sbjct: 448 ERGDKEEKEIIPGLEKHQKGPSLDNEVDAAKLKEMKREEEIAKAKLALERKKKLADKSAA 507

Query: 345 KAALR----AEKQRKEIIYGTYFF 364
           KAA+R    AEK+ KEII   + F
Sbjct: 508 KAAIRAQKEAEKKLKEIITSLFIF 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493838|ref|XP_002285016.2| PREDICTED: uncharacterized protein LOC100267528 [Vitis vinifera]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/367 (61%), Positives = 283/367 (77%), Gaps = 16/367 (4%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEE 57
           +D KRKEMEPL  ALGKLR+TN+A   R G +CSSEEEL+DLI+SL Y +QHE IPL+EE
Sbjct: 148 VDGKRKEMEPLQHALGKLRSTNSANRERGGTLCSSEEELNDLIQSLHYHMQHESIPLAEE 207

Query: 58  KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWA 117
           KQILREIKQLE TREKV+A AAMRAKIQ+S+G+KE IQDQVKL+G DLDGV+KE Q V A
Sbjct: 208 KQILREIKQLEATREKVIAGAAMRAKIQDSLGQKEAIQDQVKLIGVDLDGVRKEKQVVMA 267

Query: 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177
           KI  L   +K +D EI++L +E+  V+EKRDKA+  ++ LRKQRDEGNA+F+Q RALLN 
Sbjct: 268 KIKQLRDDLKGIDSEIDSLMEELKAVSEKRDKAYEGLQALRKQRDEGNAHFYQNRALLNN 327

Query: 178 AKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNP 237
           A+ ++ KKD++ L+ELS+SEVEK+M+LW++NKAFR+DYEKR+L SLD RQLSRDGR+RNP
Sbjct: 328 ARELAGKKDIKALEELSHSEVEKFMSLWSSNKAFREDYEKRILPSLDSRQLSRDGRMRNP 387

Query: 238 DEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADF 297
           DEKPLVV E   PSE E VAK  VK+SK DSK   Q DTLP+QKVQKEA  + T+     
Sbjct: 388 DEKPLVVLEAPTPSETETVAKAPVKRSKEDSKPPPQHDTLPSQKVQKEANDRATDSGITL 447

Query: 298 E---------IPVVEK----PASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVA 344
           E         IP +EK    P+ + +VD AKL+EMK+EE+ AKA+  +ERK+K  +   A
Sbjct: 448 ERGDKEEKEIIPGLEKHQKGPSLDNEVDAAKLKEMKREEEIAKAKLALERKKKLADKSAA 507

Query: 345 KAALRAE 351
           KAA+RA+
Sbjct: 508 KAAIRAQ 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114940|ref|XP_002316898.1| predicted protein [Populus trichocarpa] gi|222859963|gb|EEE97510.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/345 (64%), Positives = 270/345 (78%), Gaps = 11/345 (3%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
            D+KRKEMEPL QALGKLR TNNA   GICSSEEEL+DLI SLQYR+QHE IPL+EEKQI
Sbjct: 149 FDEKRKEMEPLQQALGKLRNTNNAGRVGICSSEEELNDLIYSLQYRMQHESIPLTEEKQI 208

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           LREIKQLEGTREKV+ANAAMR KIQ+S+G+KE IQDQVKLMG DLDGV+KE QA+W K+ 
Sbjct: 209 LREIKQLEGTREKVIANAAMRTKIQDSLGQKEAIQDQVKLMGVDLDGVRKERQALWEKLD 268

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
            LE KV+ALD EI+ LQ E+  V +KR+K +  ++ELRKQRDE NA F+Q R LL +AK 
Sbjct: 269 GLEAKVQALDAEIKTLQDELEAVIQKREKTYETLQELRKQRDEANANFYQSRMLLTKAKE 328

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++ KKDV+ L+EL+  EVEK+M+LW +NK+FRDDYEKR+L SLD RQLSRDGRIRNP+EK
Sbjct: 329 LAAKKDVKALEELALDEVEKFMSLWCHNKSFRDDYEKRILPSLDRRQLSRDGRIRNPNEK 388

Query: 241 PLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETE------DT 294
           PLV+ ET  PSEPE V K   K++K D K    KDTLPTQ+VQKE  K E +      D 
Sbjct: 389 PLVILETPKPSEPEPVVKAIPKRAKEDPKPIPPKDTLPTQRVQKEITKTELKPTSEHSDI 448

Query: 295 ADFEIPVVE----KPA-SEKKVDEAKLREMKKEEDRAKAREGMER 334
            D EI  +E     P+ +EK+VDEAKL+E+K+EE+ AKA++ MER
Sbjct: 449 VDKEISGLENLSKNPSPAEKEVDEAKLKEIKREEEIAKAKQAMER 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128300|ref|XP_002329130.1| predicted protein [Populus trichocarpa] gi|222869799|gb|EEF06930.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/344 (63%), Positives = 270/344 (78%), Gaps = 10/344 (2%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
            D+K+K++EPL QALGKLR TN+A  GG+CSSEEEL+DLI SLQYRIQHE IPL+EEKQI
Sbjct: 149 FDEKKKKIEPLQQALGKLRDTNSAGRGGLCSSEEELNDLIYSLQYRIQHESIPLTEEKQI 208

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           LREIKQ EGTREKV+ANAAMRAKIQ+SMG+KE IQDQVKL+G DLDGV+KE Q +W K+ 
Sbjct: 209 LREIKQFEGTREKVIANAAMRAKIQDSMGQKEAIQDQVKLIGVDLDGVRKEQQVLWGKVD 268

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
            L+GKVKALD EI+ LQ E+  V +KRDKA+  I+ELRKQRDE NA F+Q R LL +AK 
Sbjct: 269 GLDGKVKALDAEIKTLQDELTAVTQKRDKAYETIQELRKQRDEANANFYQCRMLLTKAKE 328

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++ +KDV  L+EL+++EVE +M+LW++NKAFRDDY+KR+L SLD RQ+S+DGRIRNPDEK
Sbjct: 329 LAARKDVPALEELAHAEVENFMSLWSHNKAFRDDYKKRILPSLDRRQMSKDGRIRNPDEK 388

Query: 241 PLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKK------ETEDT 294
           PLV+ ET   SEPE V K   K+ K D K  SQKD LP QKVQKE  K       E  D 
Sbjct: 389 PLVILETPKLSEPEPVVKAIAKRPKEDPKPPSQKDALPPQKVQKETTKTELKTTSEHSDI 448

Query: 295 ADFEIPVVE----KPASEKKVDEAKLREMKKEEDRAKAREGMER 334
            D E+  +E     P++EK+VDEAKL+EMK+EE+ AKA++ MER
Sbjct: 449 IDKEVSGLENLQKNPSAEKEVDEAKLKEMKREEEIAKAKQAMER 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447207|ref|XP_004141360.1| PREDICTED: proton pump-interactor 1-like [Cucumis sativus] gi|449498721|ref|XP_004160615.1| PREDICTED: proton pump-interactor 1-like [Cucumis sativus]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/376 (59%), Positives = 288/376 (76%), Gaps = 18/376 (4%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNA-RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQ 59
           +D+K KE+EPL+QALGKLR  NNA R+GG+CSSEEEL+ +I+SLQY IQHE IPLSEEKQ
Sbjct: 146 VDEKIKEIEPLNQALGKLRNANNAGRNGGLCSSEEELNAVIQSLQYHIQHESIPLSEEKQ 205

Query: 60  ILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119
           ILREIKQLEGTREKV+ANAAMRAK+Q+SM +KE +QDQVK++G DLDGV+KE QAV AKI
Sbjct: 206 ILREIKQLEGTREKVIANAAMRAKLQDSMVQKEALQDQVKIIGGDLDGVRKEQQAVRAKI 265

Query: 120 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 179
             L+  +KA+D EI+ LQ E+  V EKR +A  +I++LRK RDEGNA+F+Q R+LLN+A+
Sbjct: 266 KQLDDALKAIDNEIKTLQDELTSVTEKRGRAHESIQQLRKNRDEGNAHFYQSRSLLNKAR 325

Query: 180 AMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDE 239
            ++ +KDV+ L+EL+++EVEK+M+LWN +KAFRD+YEKR+L SLD RQ+SRDGRIRNPDE
Sbjct: 326 DLAAQKDVKALEELASNEVEKFMSLWNGDKAFRDEYEKRILPSLDGRQMSRDGRIRNPDE 385

Query: 240 KPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKK--------ET 291
           KP++      P + E+ AKPN+K++K + K     DTLP QKV KE   K        E 
Sbjct: 386 KPILAPAEPAPPQTEMAAKPNIKRTKEEPKPVPS-DTLPAQKVDKEVKHKVGKSARPLEQ 444

Query: 292 EDTADFEIPVVEKPA----SEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAA 347
           ED A+ EI  +EK +     E +VD AKL+EMK+ E+ AKA+  MERK+K +E   AKA+
Sbjct: 445 EDKAEDEIHGLEKLSKDIPKEPEVDLAKLKEMKRAEEIAKAKLAMERKKKLQEKAAAKAS 504

Query: 348 LR----AEKQRKEIIY 359
           LR    AEK+ KEIIY
Sbjct: 505 LRAQKEAEKKLKEIIY 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586536|ref|XP_002533906.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gi|223526139|gb|EEF28480.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/345 (62%), Positives = 267/345 (77%), Gaps = 16/345 (4%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
            D+KRKEMEPL QALGKLRT N AR GG+CSSEEEL+D+I SLQ+ +QHE I L+EEK+I
Sbjct: 148 FDEKRKEMEPLQQALGKLRTNNAAR-GGLCSSEEELNDIIHSLQFHMQHESISLTEEKKI 206

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           LREIKQLEGTREKV+AN+AMRAKIQ+SMG+KE IQDQVKLMG DLDGV+KE Q+VWA+I+
Sbjct: 207 LREIKQLEGTREKVIANSAMRAKIQDSMGQKEAIQDQVKLMGVDLDGVRKEQQSVWARIT 266

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
            L  KVK LD EI +LQ E+ +V E+RDKA+ +IK LR+ RDEGN +F+  R  + EAK 
Sbjct: 267 QLREKVKTLDAEINSLQDELTEVTERRDKAYDSIKSLRQLRDEGNVHFYNSRKTITEAKD 326

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++ KKDV+ L+ LS  EV K+M+LW+NNKAFRDDYEKR+L SLD RQLSRDGRIRNPDEK
Sbjct: 327 LAAKKDVKALETLSIGEVNKFMSLWSNNKAFRDDYEKRILPSLDSRQLSRDGRIRNPDEK 386

Query: 241 PLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKK------ETEDT 294
           PL+  + +VPSEPE VAK N K++K D K+   K++LPTQK  KE+ KK      E  D 
Sbjct: 387 PLLQLDMTVPSEPEPVAKANAKRAKEDLKATPLKESLPTQKAPKESNKKDLKATSEHTDV 446

Query: 295 ADFEIPVVEK------PASEKKVDEAKLREMKKEEDRAKAREGME 333
           AD EI   EK      PA  K++DEAKL+E+++EE+  KA++  E
Sbjct: 447 AD-EIYESEKQQKNLSPA--KEIDEAKLKELRREEEMEKAKQAKE 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549720|ref|XP_003543239.1| PREDICTED: uncharacterized protein LOC100819875 [Glycine max]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/344 (59%), Positives = 270/344 (78%), Gaps = 13/344 (3%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
           +D+K KE+ PL QALGKLRTTNNA  GG+CSSE+EL+ +I SLQYRIQHE IPL+EEKQI
Sbjct: 148 VDEKLKEIGPLQQALGKLRTTNNAGRGGLCSSEDELNSVIYSLQYRIQHESIPLTEEKQI 207

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           LREIKQLEGTREKV+ANAAMRAK+QESMG+KE IQDQVKL+G DLDGVKKE +A+ +KI 
Sbjct: 208 LREIKQLEGTREKVIANAAMRAKLQESMGQKETIQDQVKLIGGDLDGVKKEREAIRSKIK 267

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
            ++  +KA+D++I++LQ+E+  V++KRDKAF ++++LRKQR+EGN YF+Q R +LN+A+ 
Sbjct: 268 QIDDALKAIDKDIQSLQEELTAVSQKRDKAFESMQQLRKQREEGNTYFYQSRTVLNKARE 327

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++ KKD+  L E+S +EVEK+M LWN +KAFR+DYEKR+L SLDMRQLSRDGR+RNPDEK
Sbjct: 328 LAAKKDINALDEVSQTEVEKFMALWNKDKAFRNDYEKRILASLDMRQLSRDGRMRNPDEK 387

Query: 241 PLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKE-----AAKKETEDTA 295
           P++  E   P+E E + K   KQ K + K + Q +TLP QK  K       +K E++D A
Sbjct: 388 PIL--EEPKPAEAEALPKTFTKQPKEEPKPSPQ-ETLPAQKESKNKGRDLKSKPESKDVA 444

Query: 296 -----DFEIPVVEKPASEKKVDEAKLREMKKEEDRAKAREGMER 334
                +F+ P  E PA E ++D AKL+EMK+EE+ AKA++ +ER
Sbjct: 445 ETDEYEFKNPQKEAPAKECEIDPAKLKEMKREEEIAKAKQALER 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517130|ref|XP_003527243.1| PREDICTED: uncharacterized protein LOC100793963 [Glycine max]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/346 (59%), Positives = 266/346 (76%), Gaps = 18/346 (5%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSG-GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQ 59
           +D+K KE+EPL QALGKLRT NNA  G G+CSSEEEL++LI SL YRIQHE IP +EEKQ
Sbjct: 193 VDEKIKEIEPLQQALGKLRTANNAGRGVGLCSSEEELNNLINSLHYRIQHESIPFAEEKQ 252

Query: 60  ILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119
           ILREIKQLEGTREKV+ANAAMRAK+Q+SMG+KE IQDQVKL+G DLDGVKKE QA+ +KI
Sbjct: 253 ILREIKQLEGTREKVIANAAMRAKVQDSMGQKEAIQDQVKLIGGDLDGVKKERQAIRSKI 312

Query: 120 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 179
             LE  VKALD++I++LQ E+  V EKR+KA+ +I++ RKQRD+GN+YF+Q R +LN+A+
Sbjct: 313 KQLEDTVKALDKDIQSLQDELGAVTEKREKAYESIQQQRKQRDQGNSYFYQSRTILNKAR 372

Query: 180 AMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDE 239
            ++ KKD+  ++EL+ +EVEK M+LWN++K+FRDDYEKRLL SLDMRQL RDGR+RNPDE
Sbjct: 373 ELAAKKDINAIEELAQTEVEKAMSLWNSDKSFRDDYEKRLLPSLDMRQLCRDGRMRNPDE 432

Query: 240 KPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKK---------- 289
           KPL+  E   P+E + + K +VKQ K +   +S  +T+P QK+QKE  KK          
Sbjct: 433 KPLL--EEPKPAETDTLPKSSVKQPKEEEPKSSPPETVPEQKIQKETKKKGKDLKSNLNK 490

Query: 290 --ETEDTADFEIPVVEKPASEKKVDEAKLREMKKEEDRAKAREGME 333
             E  D  +FE+P V K   E  +D  KL+EMK+EE+ AKA++ +E
Sbjct: 491 VLEDTDEYEFELPKVNK---EPPIDPEKLKEMKREEEIAKAKQALE 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142999|emb|CBI20294.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/284 (67%), Positives = 233/284 (82%), Gaps = 3/284 (1%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEE 57
           +D KRKEMEPL  ALGKLR+TN+A   R G +CSSEEEL+DLI+SL Y +QHE IPL+EE
Sbjct: 178 VDGKRKEMEPLQHALGKLRSTNSANRERGGTLCSSEEELNDLIQSLHYHMQHESIPLAEE 237

Query: 58  KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWA 117
           KQILREIKQLE TREKV+A AAMRAKIQ+S+G+KE IQDQVKL+G DLDGV+KE Q V A
Sbjct: 238 KQILREIKQLEATREKVIAGAAMRAKIQDSLGQKEAIQDQVKLIGVDLDGVRKEKQVVMA 297

Query: 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177
           KI  L   +K +D EI++L +E+  V+EKRDKA+  ++ LRKQRDEGNA+F+Q RALLN 
Sbjct: 298 KIKQLRDDLKGIDSEIDSLMEELKAVSEKRDKAYEGLQALRKQRDEGNAHFYQNRALLNN 357

Query: 178 AKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNP 237
           A+ ++ KKD++ L+ELS+SEVEK+M+LW++NKAFR+DYEKR+L SLD RQLSRDGR+RNP
Sbjct: 358 ARELAGKKDIKALEELSHSEVEKFMSLWSSNKAFREDYEKRILPSLDSRQLSRDGRMRNP 417

Query: 238 DEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQK 281
           DEKPLVV E   PSE E VAK  VK+SK DSK   Q DTLP+QK
Sbjct: 418 DEKPLVVLEAPTPSETETVAKAPVKRSKEDSKPPPQHDTLPSQK 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452965|ref|XP_003596759.1| hypothetical protein MTR_2g085330 [Medicago truncatula] gi|355485807|gb|AES67010.1| hypothetical protein MTR_2g085330 [Medicago truncatula]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/337 (58%), Positives = 251/337 (74%), Gaps = 5/337 (1%)

Query: 1   MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
            D+K KE+EPL QALGKLR +NNA  GGIC SEEEL+  I  LQYRIQHE IPL+EEKQI
Sbjct: 149 FDEKMKEIEPLQQALGKLRNSNNAGRGGICQSEEELNKFINGLQYRIQHESIPLTEEKQI 208

Query: 61  LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
           LREIKQLEGTREKV+AN+AMR K+ +++G K+ IQDQVKL+G DLDGVKKE QA+ +KI 
Sbjct: 209 LREIKQLEGTREKVIANSAMRTKLHDTIGPKDTIQDQVKLIGGDLDGVKKERQAIRSKIK 268

Query: 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
            ++  +KA+D +I++LQ E+  V +KR++AF +I++LRKQRDEGN+YF+Q R LL +A+ 
Sbjct: 269 QIDDVLKAIDIDIQSLQAELVAVTQKREQAFESIQKLRKQRDEGNSYFYQSRTLLTKARE 328

Query: 181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
           ++ KKDV  + ELS +E EK+M LWN  KAFR DYEKR+L SLDMRQLSRDGRIRN DEK
Sbjct: 329 LAAKKDVAAIDELSQTEGEKFMALWNGGKAFRADYEKRILSSLDMRQLSRDGRIRNWDEK 388

Query: 241 PLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAK--KETEDTADFE 298
           PL + E    +EPE + KP  KQ K ++   S  +TLP QK  K   +     +D  +FE
Sbjct: 389 PL-LEEPKPAAEPEALPKPVAKQPK-EAPKPSPVETLPAQKETKSKGRDLAAIDDDYEFE 446

Query: 299 IPVVEKPAS-EKKVDEAKLREMKKEEDRAKAREGMER 334
            P  E PA+ E ++D AKL+EMK+EE+ AKA+   ER
Sbjct: 447 NPHKEAPAAKEPEIDPAKLKEMKREEEIAKAKLAAER 483

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2124019	612	PPI1 "proton pump interactor 1	0.856	0.527	0.559	1.1e-89
TAIR|locus:2087115	589	PPI2 "proton pump interactor 2	0.806	0.516	0.362	4.4e-45
TAIR|locus:2147366	576	AT5G36690 "AT5G36690" [Arabido	0.750	0.491	0.351	4.1e-37
TAIR|locus:2149084	576	AT5G36780 "AT5G36780" [Arabido	0.750	0.491	0.351	4.1e-37
TAIR|locus:2037365	1364	AT1G20970 "AT1G20970" [Arabido	0.777	0.214	0.284	3.7e-31
TAIR|locus:2037059	439	AT1G53110 "AT1G53110" [Arabido	0.559	0.480	0.330	8.1e-26
ZFIN|ZDB-GENE-100917-2	4530	plecb "plectin b" [Danio rerio	0.816	0.067	0.190	1.4e-07
MGI|MGI:1921254	844	Jakmip3 "janus kinase and micr	0.599	0.267	0.210	2e-06
UNIPROTKB|F1NM42	1288	Gga.17943 "Uncharacterized pro	0.750	0.219	0.218	2e-06
UNIPROTKB|F1NK88	1289	Gga.17943 "Uncharacterized pro	0.750	0.219	0.218	2e-06

TAIR|locus:2124019 PPI1 "proton pump interactor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 187/334 (55%), Positives = 249/334 (74%)

Query:     2 DDKRKEMEPLHQALGKLRTTN--NARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQ 59
             D+KRKEMEPL QALGKLR+ +  +AR   ICSSEEEL+ +I S QYRIQHE IPL+EEKQ
Sbjct:   146 DEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEELNSMIYSYQYRIQHESIPLTEEKQ 205

Query:    60 ILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119
             IL+EI+ LEGTR+KV+ANAAMRAKI+ESMG+K+DIQ QVKLMG+ LDGVKKE QA+ A+I
Sbjct:   206 ILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKERQAISARI 265

Query:   120 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 179
             + L  K+KA  +EI  L+ E+  V+EKRDKA++NI +LR+QRDE N+ ++Q R +LN+A+
Sbjct:   266 NELSEKLKATKDEITVLENELKTVSEKRDKAYSNIHDLRRQRDETNSEYYQNRTVLNKAR 325

Query:   180 AMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDE 239
              ++ +K++  L+ L+N+EVEK+++LW + K FR+DYEKR+LQSLD RQLSRDGR+RNPDE
Sbjct:   326 DLAAQKNISELEALANAEVEKFISLWCSKKNFREDYEKRILQSLDSRQLSRDGRMRNPDE 385

Query:   240 KPLVVAETS----VPSEPEIVAKPNVK-QSKGDSKSASQKDTLPTQKVQK--EAAK-KET 291
             KPL+  E +     PSE E+V K   K Q K +  SA + D    Q  +K  +A K K  
Sbjct:   386 KPLIAPEAAPSKATPSETEVVPKAKAKPQPKEEPVSAPKPDATVAQNTEKAKDAVKVKNV 445

Query:   292 EDTADFEIPVVEKPASEKK-VDEAKLREMKKEED 324
              D  D E+  + KP  E+K VD A  +EM+K+E+
Sbjct:   446 ADDDDDEVYGLGKPQKEEKPVDAATAKEMRKQEE 479

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=IDA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2087115 PPI2 "proton pump interactor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 121/334 (36%), Positives = 195/334 (58%)

Query:     1 MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
             +++K+ E + LH++L  LR +    S  +C S+EELD LI    Y+I+H  I   EE  +
Sbjct:   135 IEEKKMEFDALHESLRNLRCST---SDQLCFSKEELDHLIYIAHYQIEHGSIGFEEEDWV 191

Query:    61 LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS 120
             L+E ++ +G    V++        ++S+ +KE   ++VK M  +L+ VKKE  A+  KI+
Sbjct:   192 LKETEKADGI---VLS--------EDSLAEKEASINRVKSMAVELNEVKKELDAITWKIN 240

Query:   121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180
             HL  KV      +  L  +   + E+RD+++  IK LR QRD+G A F+Q   ++ +A+ 
Sbjct:   241 HLSDKVGKSQNNLRVLDVKKAHILEERDRSYERIKMLRIQRDKGKAAFYQSLPVMRKARE 300

Query:   181 MSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240
             ++   +V+ L+  ++SE +++MT WN++KAFRDDY KR+  SL  RQL++DGRI++P+ +
Sbjct:   301 LAASGNVRDLEVFASSEADRFMTQWNDDKAFRDDYVKRISPSLCERQLNQDGRIKDPEVQ 360

Query:   241 PLVVAETSVPSEP-EIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKK---------E 290
               VV E  VP +  E V + N + S   S ++SQ  ++ T K +KE  KK         E
Sbjct:   361 --VVWEKKVPVKGGEKVHETNREDS---SSNSSQYGSVITDKRKKETRKKAMDFNRSSAE 415

Query:   291 TEDTADFEIPVVEKPASEKK-VDEAKLREMKKEE 323
               D  D E  V EKP  E++ VDE  L+E ++EE
Sbjct:   416 ESDVTDLEFSVYEKPKKEEEEVDEETLKEREREE 449

GO:0005737 "cytoplasm" evidence=ISM

GO:0010155 "regulation of proton transport" evidence=ISS

TAIR|locus:2147366 AT5G36690 "AT5G36690" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 4.1e-37, P = 4.1e-37
 Identities = 109/310 (35%), Positives = 173/310 (55%)

Query:    15 LGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKV 74
             L  LR      S  +C ++EELD L    QY+I++  I L EE  +L+E ++ +G     
Sbjct:   146 LEALRNLRCTTSDQLCFTKEELDHLSYIAQYQIEYGSIGLEEEDWMLKETEKPDGI---- 201

Query:    75 MANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 134
                          + +KE   ++VK M  +L+ VK E  A+  KI+ L  K+      I 
Sbjct:   202 ------------ILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIR 249

Query:   135 ALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELS 194
              L  E   + EKRD+ +A IK LR QRD+GNA FFQ  +++ +AK ++   +V+ L+  +
Sbjct:   250 VLDLEKAHILEKRDRFYARIKMLRIQRDKGNAAFFQSLSVMCKAKELAASGNVRELEVFA 309

Query:   195 NSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPE 254
             +SEV+++MTLWN++KAFR+DY +R+  SL  R+L+ DGRI++ D +  +  E  VP +  
Sbjct:   310 SSEVDRFMTLWNDDKAFREDYVRRISHSLCERELNEDGRIKDADLQ--IFWEKKVPVKTI 367

Query:   255 IVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPAS-EKKVDE 313
               ++   K ++ DS S S +D      V  +  KKET+     ++ V EKP   E+++DE
Sbjct:   368 KRSEKVHKMNREDSSSNSSEDG----NVITDKRKKETKS----DVIVYEKPKKKEEEIDE 419

Query:   314 AKLREMKKEE 323
               L+E K+EE
Sbjct:   420 EALKERKREE 429

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149084 AT5G36780 "AT5G36780" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 4.1e-37, P = 4.1e-37
 Identities = 109/310 (35%), Positives = 173/310 (55%)

Query:    15 LGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKV 74
             L  LR      S  +C ++EELD L    QY+I++  I L EE  +L+E ++ +G     
Sbjct:   146 LEALRNLRCTTSDQLCFTKEELDHLSYIAQYQIEYGSIGLEEEDWMLKETEKPDGI---- 201

Query:    75 MANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 134
                          + +KE   ++VK M  +L+ VK E  A+  KI+ L  K+      I 
Sbjct:   202 ------------ILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIR 249

Query:   135 ALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELS 194
              L  E   + EKRD+ +A IK LR QRD+GNA FFQ  +++ +AK ++   +V+ L+  +
Sbjct:   250 VLDLEKAHILEKRDRFYARIKMLRIQRDKGNAAFFQSLSVMCKAKELAASGNVRELEVFA 309

Query:   195 NSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPE 254
             +SEV+++MTLWN++KAFR+DY +R+  SL  R+L+ DGRI++ D +  +  E  VP +  
Sbjct:   310 SSEVDRFMTLWNDDKAFREDYVRRISHSLCERELNEDGRIKDADLQ--IFWEKKVPVKTI 367

Query:   255 IVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPAS-EKKVDE 313
               ++   K ++ DS S S +D      V  +  KKET+     ++ V EKP   E+++DE
Sbjct:   368 KRSEKVHKMNREDSSSNSSEDG----NVITDKRKKETKS----DVIVYEKPKKKEEEIDE 419

Query:   314 AKLREMKKEE 323
               L+E K+EE
Sbjct:   420 EALKERKREE 429

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037365 AT1G20970 "AT1G20970" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.7e-31, P = 3.7e-31
 Identities = 94/330 (28%), Positives = 174/330 (52%)

Query:     1 MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
             M  KR+E+E L   + ++++          +S +++D  +R++++ +QH  + L+EEK  
Sbjct:   851 MHSKRQEIEALQSMISRVKSA---------ASVDDIDSRVRNMEHTMQHTTLSLNEEKGF 901

Query:    61 LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKE-SQAVWAKI 119
             +REIKQL+  RE++ ++   + ++++++ +KE  ++++K++  +LD ++ + S+A   +I
Sbjct:   902 MREIKQLKQLREQISSSMGTKDEVKQALDEKEKTEERLKVLRKELDALRNDLSKA--EEI 959

Query:   120 SHLEGKVKALDEEIEA---LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 176
             +  +   K  D E EA   LQ++       R +AF ++++L+KQ+ E N YFF+YR    
Sbjct:   960 T--KAAKKKCDGEWEAQSKLQEQFRAADAVRQEAFVHLQDLKKQQREKNKYFFKYRDNSR 1017

Query:   177 EAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRN 236
              A  M++KKD   L+ L + +VE +M +WNN+  FR  Y K   +S   R  + DGR   
Sbjct:  1018 AASEMALKKDRAALQSLCSDQVENFMNMWNNDDEFRKYYVKSNTRSTFRRLGTLDGRSLG 1077

Query:   237 PDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQK---VQKEAAKKETED 293
             PDE+P           P I   P   + +  S  A + + +P QK   V+ E +K E   
Sbjct:  1078 PDEEP-----------PRITYAPRTDKLRTSSDRAEKHEAVPAQKEKVVKFEGSKVENNG 1126

Query:   294 TADFEIPVVEKPASEKKVDEAKLREMKKEE 323
                     V KP  +K       + +K ++
Sbjct:  1127 KE------VAKPTEQKSQTTKSKKAVKPDQ 1150

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2037059 AT1G53110 "AT1G53110" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 8.1e-26, P = 8.1e-26
 Identities = 74/224 (33%), Positives = 130/224 (58%)

Query:   100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 159
             LM   ++ V+KE + V  +I  L  ++  +  EIE L  ++  V  +RDKA   IK LR 
Sbjct:   107 LMSMKINEVEKEQEVVRGRIYRLGERLSEIKMEIELLDVQMACVLNQRDKAVERIKFLRM 166

Query:   160 QRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRL 219
             QRD+GNA F+Q R ++ +A  ++   +V+ L+EL++SEVEK+M+ WNN+KAFRD+Y+KR+
Sbjct:   167 QRDKGNAAFYQSRVVMKKAIELAASGNVRDLEELADSEVEKFMSRWNNDKAFRDNYKKRI 226

Query:   220 LQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPT 279
             L S++ R+L  D +IR+ +            +  E V K  ++  +  ++  S    +P 
Sbjct:   227 LPSVNERKLRCDVQIRDLE------GNLDTENGNETVVKKAIEYKRFSTEEESDDFDIP- 279

Query:   280 QKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEE 323
               V ++  K+E E   D E   +++   E+++++A+L   +K +
Sbjct:   280 --VYEKLGKEEKE--IDEE--TLKEKKREEQLEKARLAMERKRK 317

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-100917-2 plecb "plectin b" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 63/330 (19%), Positives = 151/330 (45%)

Query:     3 DKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRI-QHEIIPLSEEKQ-- 59
             ++RK+M  +   L K +    A +  I  +E+E  +L   +Q  + + E + +  E+Q  
Sbjct:  1385 EERKKMAEMQAELDKQKQLAEAHAKAIAKAEKEAQELKLMMQEEVSKREFVAVDAERQKQ 1444

Query:    60 -ILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAK 118
              I  E+ +L+   E+ + + + +  ++E++  +  I+++++++   L+   K+      +
Sbjct:  1445 NIQLELHELKNLSEQQIKSKSQQ--VEEALQSRVKIEEEIRIIRLQLETTMKQKSTAQEE 1502

Query:   119 ISHLEGKV-------KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 171
             +  L  K        KA  EE E L+++VN+  +K+  A   +K L+ + ++  A   Q 
Sbjct:  1503 LMQLRSKAAEAERLRKAAQEEAEKLRKQVNEETQKKRIAEEELK-LKSEAEKEAAR--QK 1559

Query:   172 RALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRD 231
             +  L++   + ++ D +  + +  +E+EK   +    K  +D  +K     L  +++S  
Sbjct:  1560 QKALDDLDKLKMEVD-EAERHMKQAEIEKERQI----KLAQDAAQKSASAELQSKRMSFV 1614

Query:   232 GRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKET 291
              +    +E       T +  + E       ++    ++  ++K+    ++   EA +   
Sbjct:  1615 EKTSKLEESLREKHGTVIQLQEEAERLKKQQEEADKAREDAEKELEKWRQKANEALRLRL 1674

Query:   292 EDTADFEIPVVEKPASEKKVDEAKLREMKK 321
             +   +     + +  +EK+ DEA+ RE KK
Sbjct:  1675 QAEEEAHKKTLAQEDAEKQKDEAE-REAKK 1703

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

MGI|MGI:1921254 Jakmip3 "janus kinase and microtubule interacting protein 3" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 50/238 (21%), Positives = 114/238 (47%)

Query:    30 CSSEEELDDLIRS----LQYR-IQHEIIPLSEEKQILREIKQLEGTRE---KVMANAAMR 81
             C+ E++L++ +      L++R +  E   L     +L+E  Q+ GT +   +V     ++
Sbjct:   483 CTPEDDLEEGMAKEETELRFRQLTMEYQALQRAYALLQE--QVGGTLDAEREVKTREQLQ 540

Query:    82 AKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVN 141
             A+IQ +  + ED++  +   G D+  ++ E QA++ +   L  K+K ++ E   L+ EV 
Sbjct:   541 AEIQRAQTRVEDLEKALAEQGQDMKWIE-EKQALYRRNQELVEKIKQMETEEARLKHEVQ 599

Query:   142 DVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKY 201
             D  ++ +     I EL ++  +  A  F +   ++    + V  + +G+ ++  +E+ K 
Sbjct:   600 DAKDQNELLEFRILELEERERKSPAINFHHTPFVDGKSPLQVYCEAEGVTDILVTELMKK 659

Query:   202 MTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPD-EKPLVVAETSVPSEPEIVAK 258
             + +  +N    ++ +  ++Q+  +  L+     R  + E  L      + SE E+ +K
Sbjct:   660 LDILGDNANLTNEEQVVVIQARTVLTLAEKWLQRIEETESALQRKMVDLESEKELFSK 717

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019900 "kinase binding" evidence=IEA

UNIPROTKB|F1NM42 Gga.17943 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 67/307 (21%), Positives = 136/307 (44%)

Query:    32 SEEELDDLIRSLQYRIQHEIIPLSEE----KQILREIKQLEGTREKVMA---NAAMRAKI 84
             +++EL+   RS   R++  +  L EE    K +   ++QLE  REK +    N   + K 
Sbjct:   418 AKDELEQKYRSANTRLEKIVKELDEEITSRKNVESAVRQLE--REKALLQHKNTEYQRKA 475

Query:    85 QESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 144
             +    KK +++++V  +   L+ +KK +Q        +    + LDE    L+ E    A
Sbjct:   476 EHEADKKRNLENEVNSLKDQLEDLKKRNQNSQISNEKINQLQRQLDEANSLLRSESETAA 535

Query:   145 EKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSE------- 197
               R     + K+++ Q +  N        LL  AK + ++KD   L+    SE       
Sbjct:   536 RLRKNQTESTKQIQ-QLEANNRELQDKNCLLENAK-LKLEKDFLNLQSALESERRDRSHG 593

Query:   198 VEKYMTLWNNNKAFRDDYE--KRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEI 255
              E    L     +  ++ +  K  L  L+M +     ++ +  EK     E  +  + ++
Sbjct:   594 SEIISDLQGRISSLEEEVKNGKSALAKLEMEKRQLQEKLTDL-EKEKSNMEIDMTYKFKV 652

Query:   256 VAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAK 315
             + + N++Q + + K A++       K+ +   + ++E   + E  ++E+ A ++KV E +
Sbjct:   653 MQQ-NLEQEEAEHK-ATKARLADKNKIYESIEEAKSEAMKEMEKKLLEERALKQKV-ENR 709

Query:   316 LREMKKE 322
             L E +K+
Sbjct:   710 LLEAEKQ 716

GO:0005622 "intracellular" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NK88 Gga.17943 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 67/307 (21%), Positives = 136/307 (44%)

Query:    32 SEEELDDLIRSLQYRIQHEIIPLSEE----KQILREIKQLEGTREKVMA---NAAMRAKI 84
             +++EL+   RS   R++  +  L EE    K +   ++QLE  REK +    N   + K 
Sbjct:   419 AKDELEQKYRSANTRLEKIVKELDEEITSRKNVESAVRQLE--REKALLQHKNTEYQRKA 476

Query:    85 QESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 144
             +    KK +++++V  +   L+ +KK +Q        +    + LDE    L+ E    A
Sbjct:   477 EHEADKKRNLENEVNSLKDQLEDLKKRNQNSQISNEKINQLQRQLDEANSLLRSESETAA 536

Query:   145 EKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSE------- 197
               R     + K+++ Q +  N        LL  AK + ++KD   L+    SE       
Sbjct:   537 RLRKNQTESTKQIQ-QLEANNRELQDKNCLLENAK-LKLEKDFLNLQSALESERRDRSHG 594

Query:   198 VEKYMTLWNNNKAFRDDYE--KRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEI 255
              E    L     +  ++ +  K  L  L+M +     ++ +  EK     E  +  + ++
Sbjct:   595 SEIISDLQGRISSLEEEVKNGKSALAKLEMEKRQLQEKLTDL-EKEKSNMEIDMTYKFKV 653

Query:   256 VAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAK 315
             + + N++Q + + K A++       K+ +   + ++E   + E  ++E+ A ++KV E +
Sbjct:   654 MQQ-NLEQEEAEHK-ATKARLADKNKIYESIEEAKSEAMKEMEKKLLEERALKQKV-ENR 710

Query:   316 LREMKKE 322
             L E +K+
Sbjct:   711 LLEAEKQ 717

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0010825 "positive regulation of centrosome duplication" evidence=IEA

GO:0016525 "negative regulation of angiogenesis" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0031616 "spindle pole centrosome" evidence=IEA

GO:0045616 "regulation of keratinocyte differentiation" evidence=IEA

GO:0051298 "centrosome duplication" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 32/155 (20%), Positives = 80/155 (51%), Gaps = 13/155 (8%)

Query: 11  LHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGT 70
             +A  KL  T          + E L+DL+  L+ +++     L  + +     ++L+  
Sbjct: 174 KEEAERKLERTE--------ENLERLEDLLEELEKQLE----KLERQAEKAERYQELKAE 221

Query: 71  REKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD 130
             + +  A + AK++E   + E++++++  +  +L+ +++E +    +I  L+ +++ L 
Sbjct: 222 LRE-LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280

Query: 131 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165
           EE+E LQ+E+ ++ E+ ++    I  LR++ +E  
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELE 315

Length = 1163

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 46/307 (14%), Positives = 113/307 (36%), Gaps = 41/307 (13%)

Query: 29  ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESM 88
           I + +   D+++ +L       I  L EE    R +++L     K+             +
Sbjct: 11  IVTLKSYKDEVLEALHELGVVHIEDLKEELSNER-LRKLRSLLTKLSEALDKLRSYLPKL 69

Query: 89  GKKEDIQDQVKLMGSD--LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 146
               + + +V +   +  +  V++E + +  +I  LE ++  L+ EI+ L+QE+  +   
Sbjct: 70  NPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL--- 126

Query: 147 RDKAFANIK-ELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 205
             + + N   +L           F      ++ + + ++ DV+ ++ +S  +   Y+ + 
Sbjct: 127 --EPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVV 184

Query: 206 NNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSK 265
              +   +  E+                ++    + L + E   PSE  I          
Sbjct: 185 VLKELSDEVEEE----------------LKKLGFERLELEEEGTPSE-LI---------- 217

Query: 266 GDSKSASQKDTLPTQKVQ-KEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEED 324
              +   + + +  ++    E  K+  +   +  + + E    E +  EA  +    + D
Sbjct: 218 --REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKF--LKTD 273

Query: 325 RAKAREG 331
           +  A EG
Sbjct: 274 KTFAIEG 280

Length = 646

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 40/299 (13%), Positives = 126/299 (42%), Gaps = 4/299 (1%)

Query: 55  SEEKQILREIKQLEGTREKVM-ANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQ 113
            E K++  E+ +LE   EK+     +++ +++      E+++ Q++ +   L+ +K+E  
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726

Query: 114 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 173
           A+  ++  L+ +++ L+EE+E L++E+ ++ E+ ++    ++ L +   +      +   
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786

Query: 174 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGR 233
                +     ++++   E +   ++       + +  R+  E+  ++ L+      + +
Sbjct: 787 KRQALQ--EELEELEEELEEAERRLDALERELESLEQRRERLEQE-IEELEEEIEELEEK 843

Query: 234 IRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETED 293
           +   +E+   + +     + E+      K+   D     +++    ++  +E   +  E 
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 294 TADFEIPVVEKPASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEK 352
             + E         E K++  ++   + EE+  +  E       + E +  +  + A  
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.83
PRK04778	569	septation ring formation regulator EzrA; Provision	96.82
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.09
PRK11637	428	AmiB activator; Provisional	95.85
PRK03918	880	chromosome segregation protein; Provisional	95.5
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.45
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.4
PRK03918	880	chromosome segregation protein; Provisional	95.0
PRK11637	428	AmiB activator; Provisional	94.9
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.72
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.63
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.48
KOG0964	1200	consensus Structural maintenance of chromosome pro	94.24
PRK09039	343	hypothetical protein; Validated	94.09
PRK04778	569	septation ring formation regulator EzrA; Provision	94.04
PRK02224	880	chromosome segregation protein; Provisional	93.86
PHA02562	562	46 endonuclease subunit; Provisional	93.63
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.43
PRK09039	343	hypothetical protein; Validated	93.28
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.22
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.21
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	93.18
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.05
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	92.46
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	92.01
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	91.84
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.77
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	91.67
PHA02562	562	46 endonuclease subunit; Provisional	90.64
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.52
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.15
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.04
KOG0018	1141	consensus Structural maintenance of chromosome pro	89.71
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	89.37
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	88.85
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	88.82
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	88.62
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	88.18
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	87.89
KOG0996	1293	consensus Structural maintenance of chromosome pro	87.11
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.77
PF00038	312	Filament: Intermediate filament protein; InterPro:	86.4
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	86.39
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	86.06
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	86.04
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	85.01
PRK01156	895	chromosome segregation protein; Provisional	84.97
KOG1962	216	consensus B-cell receptor-associated protein and r	84.93
PRK04863	1486	mukB cell division protein MukB; Provisional	84.92
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.92
PRK10884	206	SH3 domain-containing protein; Provisional	84.79
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	84.76
KOG0979	1072	consensus Structural maintenance of chromosome pro	84.59
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	84.32
PRK04863	1486	mukB cell division protein MukB; Provisional	84.14
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	84.01
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	83.19
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	82.82
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	82.79
COG4942	420	Membrane-bound metallopeptidase [Cell division and	82.78
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	82.59
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	82.53
COG4477	570	EzrA Negative regulator of septation ring formatio	82.0
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	81.95
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	81.84
KOG0964	1200	consensus Structural maintenance of chromosome pro	81.68
KOG0933	1174	consensus Structural maintenance of chromosome pro	81.4
PF00038	312	Filament: Intermediate filament protein; InterPro:	80.34

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.83  E-value=5.1e-07  Score=88.91  Aligned_cols=150  Identities=22%  Similarity=0.335  Sum_probs=123.6

Q ss_pred             hhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHH
Q 017105           16 GKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ   95 (377)
Q Consensus        16 ~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iq   95 (377)
                      +.++...+... +.-.|...|...|..|++.+++..+|+.+|++++..|++|++.-..+-.          .+..    .
T Consensus        93 ~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k----------~~e~----~  157 (294)
T COG1340          93 RELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK----------ALEE----N  157 (294)
T ss_pred             HHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH----------HHHH----H
Confidence            45665555433 4568999999999999999999999999999999999999888664422          2222    2


Q ss_pred             HHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 017105           96 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL  175 (377)
Q Consensus        96 eqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~  175 (377)
                      +.++.+-+++++++++...+...|..+.+....+..++..+..+.+.++...|.+.+.+..++...++.+..|-+....+
T Consensus       158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el  237 (294)
T COG1340         158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL  237 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34555667789999999999999999999999999999999999999999999999999999999888888888777777


Q ss_pred             HHHHH
Q 017105          176 NEAKA  180 (377)
Q Consensus       176 ~kare  180 (377)
                      +....
T Consensus       238 re~~k  242 (294)
T COG1340         238 RELEK  242 (294)
T ss_pred             HHHHH
Confidence            66554

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.82  E-value=0.13  Score=54.99  Aligned_cols=94  Identities=23%  Similarity=0.387  Sum_probs=59.7

Q ss_pred             HhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105           99 KLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA  178 (377)
Q Consensus        99 K~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka  178 (377)
                      ..+..+|..|.+....+...++.....++.+...+..+.+++..+...+.+..+.+..||+.-.+.....-.++..+...
T Consensus       351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i  430 (569)
T PRK04778        351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI  430 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444445555666777778888888888888888888888887777766666666666666


Q ss_pred             HHHHhccCHHHHHH
Q 017105          179 KAMSVKKDVQGLKE  192 (377)
Q Consensus       179 rela~~~~v~~l~~  192 (377)
                      +.+..+.++.++.+
T Consensus       431 kr~l~k~~lpgip~  444 (569)
T PRK04778        431 KRYLEKSNLPGLPE  444 (569)
T ss_pred             HHHHHHcCCCCCcH
Confidence            66555555554433

>TIGR00606 rad50 rad50

Probab=96.09  E-value=0.6  Score=54.62  Aligned_cols=144  Identities=10%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhcCcC---chHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccc
Q 017105           29 ICSSEEELDDLIRSLQYRIQHEIIP---LSEE-KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSD  104 (377)
Q Consensus        29 ~~~S~eeiD~~I~~Le~~i~h~sm~---L~EE-Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~e  104 (377)
                      ...|+++|...|..++..+..-+-.   +.++ .+.-.+|+.|+..   +....+.+.++...+..+..+..++..+   
T Consensus       820 ~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~k---i~el~~~klkl~~~l~~r~~le~~L~el---  893 (1311)
T TIGR00606       820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK---TNELKSEKLQIGTNLQRRQQFEEQLVEL---  893 (1311)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3458999999999998888764332   2333 4455666666554   4445566666677666666666666554   


Q ss_pred             hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 017105          105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK  184 (377)
Q Consensus       105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~  184 (377)
                          ..++..++..|..+...+.-+...+..++.++..+....+..+   ..++.+++..+..+-+.........+|...
T Consensus       894 ----~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~  966 (1311)
T TIGR00606       894 ----STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KKAQDKVNDIKEKVKNIHGYMKDIENKIQD  966 (1311)
T ss_pred             ----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                4444555555555545555555555555555555444444333   223333333333344444444444444444


Q ss_pred             c
Q 017105          185 K  185 (377)
Q Consensus       185 ~  185 (377)
                      |
T Consensus       967 ~  967 (1311)
T TIGR00606       967 G  967 (1311)
T ss_pred             C
Confidence            4

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11637 AmiB activator; Provisional

Probab=95.85  E-value=0.27  Score=50.56  Aligned_cols=68  Identities=9%  Similarity=0.072  Sum_probs=35.6

Q ss_pred             hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017105          105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR  172 (377)
Q Consensus       105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r  172 (377)
                      ++.+..++..+...|..+..++..+..+|..+..++..+...+..+-..|..+++.+.....++|.+-
T Consensus        70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g  137 (428)
T PRK11637         70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQG  137 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33344444444444444445555555555555555555555555555555555555555555555543

>PRK03918 chromosome segregation protein; Provisional

Probab=95.50  E-value=3.5  Score=45.55  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=11.7

Q ss_pred             hHHHHHHhhccchhhhHHhHHHHHHHHHhHH
Q 017105           93 DIQDQVKLMGSDLDGVKKESQAVWAKISHLE  123 (377)
Q Consensus        93 ~iqeqiK~~~~eLD~LKKE~dalr~kik~le  123 (377)
                      .+...+..+...|+.++.++..++..|..+.
T Consensus       616 ~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~  646 (880)
T PRK03918        616 REEKELKKLEEELDKAFEELAETEKRLEELR  646 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334434433333333333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.45  E-value=1.4  Score=43.06  Aligned_cols=125  Identities=20%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhhcCcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHH
Q 017105           35 ELDDLIRSLQYRIQHEIIPLSEE-KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQ  113 (377)
Q Consensus        35 eiD~~I~~Le~~i~h~sm~L~EE-Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~d  113 (377)
                      .||..+.+|++++.    +..++ +++-.|+..+++.             +.+.--..+.+..++..+..+|+.++..++
T Consensus        14 ~lD~e~~rl~~~~~----~~~~~l~k~~~e~e~~~~~-------------~~~~~~e~e~le~qv~~~e~ei~~~r~r~~   76 (239)
T COG1579          14 KLDLEKDRLEPRIK----EIRKALKKAKAELEALNKA-------------LEALEIELEDLENQVSQLESEIQEIRERIK   76 (239)
T ss_pred             HHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777888877765    33322 3344444443333             222233455566777776666666666666


Q ss_pred             HHHHHHHhH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105          114 AVWAKISHL--EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN  176 (377)
Q Consensus       114 alr~kik~l--edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~  176 (377)
                      ..+.++..+  ...+.+++-++..+..+...+......+...+..|.++........-.-++.+.
T Consensus        77 ~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~  141 (239)
T COG1579          77 RAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA  141 (239)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665444  234455555555555555555555555555555555555555444333333333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.40  E-value=1.4  Score=44.24  Aligned_cols=71  Identities=27%  Similarity=0.396  Sum_probs=59.7

Q ss_pred             HhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 017105          110 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA  180 (377)
Q Consensus       110 KE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare  180 (377)
                      .++..+.+.++.+.++...+...|..|..+..++....-.+|..++.+|+..|+.+..|-+++..+....+
T Consensus       158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~e  228 (294)
T COG1340         158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHE  228 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            44445556666666777888889999999999999999999999999999999999999999888877665

>PRK03918 chromosome segregation protein; Provisional

Probab=95.00  E-value=6.2  Score=43.70  Aligned_cols=6  Identities=33%  Similarity=0.362  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 017105          196 SEVEKY  201 (377)
Q Consensus       196 ~eVe~f  201 (377)
                      .+++.|
T Consensus       743 ~~l~~~  748 (880)
T PRK03918        743 SKVGEI  748 (880)
T ss_pred             HHHHHH
Confidence            333333

>PRK11637 AmiB activator; Provisional

Probab=94.90  E-value=0.64  Score=47.78  Aligned_cols=73  Identities=12%  Similarity=0.232  Sum_probs=40.0

Q ss_pred             HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017105           97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF  169 (377)
Q Consensus        97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fy  169 (377)
                      +++.+..+|..++.++..+...|..+..++..+...|..+..++..+....+..-..|..+..+++.....|-
T Consensus        55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555555555555555555555555555555555555555555555555555554443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.72  E-value=7.6  Score=42.10  Aligned_cols=187  Identities=17%  Similarity=0.272  Sum_probs=98.3

Q ss_pred             hhhhhHHHHHH----hhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCc--------CchHHHHHHHHHHH------
Q 017105            5 RKEMEPLHQAL----GKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--------PLSEEKQILREIKQ------   66 (377)
Q Consensus         5 ~~Em~~lq~aL----~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm--------~L~EEKk~L~EI~~------   66 (377)
                      ++||-.|.+.|    .|+|.+.+--+        -|...|.-|.....+++=        .|..=+++|.++..      
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~--------~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e  112 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNR--------KLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLE  112 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            46788888887    58887654211        344447777777666532        23333555555521      


Q ss_pred             --HHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 017105           67 --LEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA  144 (377)
Q Consensus        67 --L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~  144 (377)
                        +.+.++.+..+..+.   ..+........+.++....-|..+..++.-+...++.+++.+.-++.+...|..++..+.
T Consensus       113 ~ei~kl~~e~~elr~~~---~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  113 IEITKLREELKELRKKL---EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             HHHHHhHHHHHHHHHHH---HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence              222223233322222   223223333334444444456667777777777777777777777777666666666666


Q ss_pred             HHHHHHH-------HHHHHHHHH--------------------Hh--hhhHHHHHHH-----HHHHHHHHHHhccCHHHH
Q 017105          145 EKRDKAF-------ANIKELRKQ--------------------RD--EGNAYFFQYR-----ALLNEAKAMSVKKDVQGL  190 (377)
Q Consensus       145 e~rd~Ay-------e~i~~LRkq--------------------~d--E~n~~fyq~r-----~~~~karela~~~~v~~l  190 (377)
                      ...|..-       ..++.|..+                    +|  ..+..||.+.     ++++..=+--...+..++
T Consensus       190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~di  269 (546)
T KOG0977|consen  190 KQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDI  269 (546)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5444433       222222222                    11  1344555543     344444444445566677


Q ss_pred             HHHHHHHHHHHH
Q 017105          191 KELSNSEVEKYM  202 (377)
Q Consensus       191 ~~~~~~eVe~fm  202 (377)
                      +..+...+...-
T Consensus       270 E~~Y~~kI~~i~  281 (546)
T KOG0977|consen  270 ESWYKRKIQEIR  281 (546)
T ss_pred             HHHHHHHHHHHH
Confidence            777777666654

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.63  E-value=5.8  Score=42.68  Aligned_cols=92  Identities=18%  Similarity=0.353  Sum_probs=64.1

Q ss_pred             HhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105           99 KLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA  178 (377)
Q Consensus        99 K~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka  178 (377)
                      +.+...|..|.+..+.+...+..-.--++.+...+..+...+..+........+.+..||+.-.........++..++..
T Consensus       347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i  426 (560)
T PF06160_consen  347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI  426 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555544444444556677788888888888888888888888888888777777777777777777


Q ss_pred             HHHHhccCHHHH
Q 017105          179 KAMSVKKDVQGL  190 (377)
Q Consensus       179 rela~~~~v~~l  190 (377)
                      +....+-++-+|
T Consensus       427 kR~lek~nLPGl  438 (560)
T PF06160_consen  427 KRRLEKSNLPGL  438 (560)
T ss_pred             HHHHHHcCCCCC
Confidence            777777666544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.48  E-value=4.9  Score=46.74  Aligned_cols=101  Identities=15%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 017105          104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV  183 (377)
Q Consensus       104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~  183 (377)
                      ++......++.+...|..+..++..+...+..|...+..+..........+..++.++...+..+-.++........-. 
T Consensus       815 ~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l-  893 (1163)
T COG1196         815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL-  893 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3333333334444444444444444444444455555555555555555555555555555554444444333332211 


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHh
Q 017105          184 KKDVQGLKELSNSEVEKYMTLWN  206 (377)
Q Consensus       184 ~~~v~~l~~~~~~eVe~fm~lwn  206 (377)
                       ..+..-..-|..+++++.+.||
T Consensus       894 -~~~~~~~~~~~~~~~~~~~~~~  915 (1163)
T COG1196         894 -RELESELAELKEEIEKLRERLE  915 (1163)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             1222333445566666666664

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.24  E-value=14  Score=42.87  Aligned_cols=201  Identities=17%  Similarity=0.293  Sum_probs=120.1

Q ss_pred             hhhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCch----HHHHHHHHHHHHHHhHHHH------
Q 017105            5 RKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLS----EEKQILREIKQLEGTREKV------   74 (377)
Q Consensus         5 ~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~----EEKk~L~EI~~L~~~R~~V------   74 (377)
                      ..++.-||.+|..+|.           -++++|..|..+-.+|+.-.....    +=..+..|+..+++.+-.|      
T Consensus       677 ~~~~~~l~~~L~~~r~-----------~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~  745 (1200)
T KOG0964|consen  677 RSELKELQESLDEVRN-----------EIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEP  745 (1200)
T ss_pred             HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH
Confidence            4567788888888762           367888888888777765544322    1233333333333333322      


Q ss_pred             ---------------HHHHHHHH-HHHhhhhhh--hhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH-----
Q 017105           75 ---------------MANAAMRA-KIQESMGKK--EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE-----  131 (377)
Q Consensus        75 ---------------~anaa~~~-ki~~s~~~k--e~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~-----  131 (377)
                                     .+-+..+. .+...|...  -...++++.++.+|+.+..++.+++..-.+++....++..     
T Consensus       746 k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~k  825 (1200)
T KOG0964|consen  746 KGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTK  825 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           22222111 111111111  1135567777888888888777766654444433333332     


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHH
Q 017105          132 ----------------------EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQG  189 (377)
Q Consensus       132 ----------------------ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~  189 (377)
                                            ++.....++..+......+..++..|-...+...+..-+.+..+.+++.++...--. 
T Consensus       826 L~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~-  904 (1200)
T KOG0964|consen  826 LYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN-  904 (1200)
T ss_pred             HHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence                                  234455556666666666777777777778888888888888888888877655333 


Q ss_pred             HHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Q 017105          190 LKELSNSEVEKYMTLWNNNKAFRDDYEKRL  219 (377)
Q Consensus       190 l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~  219 (377)
                       ..| ..++|+.|..-+.--.=|++|.++|
T Consensus       905 -~~~-dKe~Ek~~~rk~~Ll~KreE~~ekI  932 (1200)
T KOG0964|consen  905 -INF-DKELEKLVRRKHMLLKKREECCEKI  932 (1200)
T ss_pred             -hhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222 2788888888877777788777763

>PRK09039 hypothetical protein; Validated

Probab=94.09  E-value=2.4  Score=42.91  Aligned_cols=72  Identities=18%  Similarity=0.307  Sum_probs=47.7

Q ss_pred             HHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105           94 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN  165 (377)
Q Consensus        94 iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n  165 (377)
                      .+.+...+..+|+..+.........+..|+..+.+++..+..|+..++++......+...|..|...++...
T Consensus       114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556667777777777766777777777777777777777777777777666666666665544443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.04  E-value=10  Score=40.75  Aligned_cols=112  Identities=12%  Similarity=0.270  Sum_probs=74.5

Q ss_pred             HHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105           82 AKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR  161 (377)
Q Consensus        82 ~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~  161 (377)
                      .++..-......+.+.+......+..+..+++.+...++.++.....+...+..|...-..+....+..-..+..++...
T Consensus       355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l  434 (569)
T PRK04778        355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL  434 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444455566666666777888888888888887777777777777777777777777777666666666544


Q ss_pred             hhh---------hHHHHHHHHHHHHHHHHHhcc--CHHHHHHH
Q 017105          162 DEG---------NAYFFQYRALLNEAKAMSVKK--DVQGLKEL  193 (377)
Q Consensus       162 dE~---------n~~fyq~r~~~~karela~~~--~v~~l~~~  193 (377)
                      ...         ...|+.-...+.....-...|  |+.++...
T Consensus       435 ~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e  477 (569)
T PRK04778        435 EKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRL  477 (569)
T ss_pred             HHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence            333         346666666677766666667  66777733

>PRK02224 chromosome segregation protein; Provisional

Probab=93.86  E-value=10  Score=42.23  Aligned_cols=42  Identities=24%  Similarity=0.341  Sum_probs=22.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105          123 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG  164 (377)
Q Consensus       123 edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~  164 (377)
                      .+.+..+..+++.|..++..+...++...+.+..||.+.++.
T Consensus       598 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        598 LAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555555556666666666665553

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.63  E-value=10  Score=39.70  Aligned_cols=76  Identities=22%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             HHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105           95 QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ  170 (377)
Q Consensus        95 qeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq  170 (377)
                      +++...+...+..++..+...+..|..+..+...++.++..|......+..........+..|..+..+.....+.
T Consensus       329 ~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        329 MDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555666666666666666666666666666666666666666666666666666666666554433

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.43  E-value=2.7  Score=40.63  Aligned_cols=84  Identities=14%  Similarity=0.291  Sum_probs=42.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017105           67 LEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK  146 (377)
Q Consensus        67 L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~  146 (377)
                      +...|.++..+-...+.|-+.++.-+...--|..       ++++++.+...-....+.+.-|+.+|+.|..-...+...
T Consensus         3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e-------~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e   75 (230)
T PF10146_consen    3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEE-------YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE   75 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666665555444444444       444444444444444444444555555554444444444


Q ss_pred             HHHHHHHHHHH
Q 017105          147 RDKAFANIKEL  157 (377)
Q Consensus       147 rd~Aye~i~~L  157 (377)
                      |++....|..|
T Consensus        76 r~~~~~~i~r~   86 (230)
T PF10146_consen   76 RNKRQEKIQRL   86 (230)
T ss_pred             HHHHHHHHHHH
Confidence            44444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK09039 hypothetical protein; Validated

Probab=93.28  E-value=10  Score=38.41  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=40.5

Q ss_pred             hhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 017105          106 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK  179 (377)
Q Consensus       106 D~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kar  179 (377)
                      +.+......+...+......+.....++..|+.+..++..+....-..|..+..+-.+....+-.+...++.+-
T Consensus       112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555555555555566666666655555555555555555555555555555555543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.22  E-value=20  Score=41.90  Aligned_cols=21  Identities=29%  Similarity=0.221  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCcC
Q 017105           33 EEELDDLIRSLQYRIQHEIIP   53 (377)
Q Consensus        33 ~eeiD~~I~~Le~~i~h~sm~   53 (377)
                      ..+++..|..+..++.+..-.
T Consensus       297 ~~~le~~~~~~~~~~~~~~~~  317 (1163)
T COG1196         297 IEELEGEISLLRERLEELENE  317 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555554444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.21  E-value=15  Score=45.41  Aligned_cols=172  Identities=18%  Similarity=0.288  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHH
Q 017105           35 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQA  114 (377)
Q Consensus        35 eiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~da  114 (377)
                      .+......|+.++..---.|..|++...+..  +..|+....+...+..+.+.-.++..+..+++-+..+|-.+..+++.
T Consensus      1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~E--k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELE--KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4455566677777777777888888888877  55566666666666666666667777777666655555554444444


Q ss_pred             HHHHHHhHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHH
Q 017105          115 VWAKISHLEGKVKALDEEIEALQ-------QEVNDVAEKRDKAFANIKELRKQRDEG--------------NAYFFQYRA  173 (377)
Q Consensus       115 lr~kik~ledk~~ai~~ei~~L~-------eEl~a~~e~rd~Aye~i~~LRkq~dE~--------------n~~fyq~r~  173 (377)
                      ...-+..+...+..+...|..|.       ..+..+...+.+.-..+..|..+.++.              ...|+.-++
T Consensus      1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~ 1167 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRR 1167 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44444444433444444333333       334444444444444455555554443              225555555


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCCh
Q 017105          174 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNK  209 (377)
Q Consensus       174 ~~~karela~~~~v~~l~~~~~~eVe~fm~lwn~~~  209 (377)
                      .+... .+.....+..++..|...|...=+..-+..
T Consensus      1168 ~leee-~~~~e~~~~~lr~~~~~~~~el~~qle~l~ 1202 (1930)
T KOG0161|consen 1168 DLEEE-TLDHEAQIEELRKKHADSLAELQEQLEQLQ 1202 (1930)
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55543 234455677777777777777666554433

>TIGR00606 rad50 rad50

Probab=93.18  E-value=17  Score=42.96  Aligned_cols=38  Identities=18%  Similarity=0.022  Sum_probs=28.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHH
Q 017105          186 DVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSL  223 (377)
Q Consensus       186 ~v~~l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~~~S~  223 (377)
                      +...+-.-+..+.+..+.-.+.-.+-+..|.+++...+
T Consensus       636 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~  673 (1311)
T TIGR00606       636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT  673 (1311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445566677888888777777888888888888873

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.05  E-value=4.2  Score=39.72  Aligned_cols=29  Identities=14%  Similarity=0.166  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017105          143 VAEKRDKAFANIKELRKQRDEGNAYFFQY  171 (377)
Q Consensus       143 ~~e~rd~Aye~i~~LRkq~dE~n~~fyq~  171 (377)
                      +.+.+...+..+..|-...+..-..||+.
T Consensus       154 i~e~~~~~~~~~~~L~~~l~~ell~~yer  182 (239)
T COG1579         154 IREEGQELSSKREELKEKLDPELLSEYER  182 (239)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            33333334444444444444333344443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=92.46  E-value=20  Score=41.80  Aligned_cols=125  Identities=18%  Similarity=0.288  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH
Q 017105           54 LSEEKQILREIKQLEGTREKVMANAAMRA--KIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE  131 (377)
Q Consensus        54 L~EEKk~L~EI~~L~~~R~~V~anaa~~~--ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~  131 (377)
                      +.+++..+..|.+++-..+.+...-+..+  .+-+...+-..+.+.++.+...++.+...++....++..++.++..+.+
T Consensus       244 i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea  323 (1074)
T KOG0250|consen  244 IKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEA  323 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            45666666666666555554443333211  1111111222233444444455555666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105          132 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA  178 (377)
Q Consensus       132 ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka  178 (377)
                      .+..+..+.++-..+.+.+.+.++.+|.+..+....|-+....+++.
T Consensus       324 ~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~  370 (1074)
T KOG0250|consen  324 KIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL  370 (1074)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666665555555554444444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=92.01  E-value=11  Score=43.86  Aligned_cols=44  Identities=14%  Similarity=0.164  Sum_probs=25.1

Q ss_pred             hHhhhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 017105            3 DKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQH   49 (377)
Q Consensus         3 ~K~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h   49 (377)
                      ++++.|+.+++-..++..+..   ...|.-|-+++.....++..+.+
T Consensus       249 e~~~~~~~~e~~~~~l~~Lk~---k~~W~~V~~~~~ql~~~~~~i~~  292 (1074)
T KOG0250|consen  249 EKLDNLEQLEDLKENLEQLKA---KMAWAWVNEVERQLNNQEEEIKK  292 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666655554443   33456666666666666655544

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=91.84  E-value=12  Score=44.22  Aligned_cols=117  Identities=19%  Similarity=0.282  Sum_probs=89.1

Q ss_pred             HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 017105          118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSE  197 (377)
Q Consensus       118 kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~e  197 (377)
                      .+...-.....+..++..|+++...+.-.+++.-+.+..|+...++....|++-...-+- .+..++..+..+.+.    
T Consensus       872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine~----  946 (1294)
T KOG0962|consen  872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINEK----  946 (1294)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH----
Confidence            333333455667778999999999999999999999999999999999999988777555 455555555555444    


Q ss_pred             HHHHHHHHhCChhhHH----HHHHHhHHHHHhhhhccCCCCCCCCC
Q 017105          198 VEKYMTLWNNNKAFRD----DYEKRLLQSLDMRQLSRDGRIRNPDE  239 (377)
Q Consensus       198 Ve~fm~lwn~~~~FR~----dY~k~~~~S~~~R~~t~DGR~~~pde  239 (377)
                      |..|......+..|+.    +|-..+++.+..|+..+|+|+++--.
T Consensus       947 ~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~  992 (1294)
T KOG0962|consen  947 VSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQ  992 (1294)
T ss_pred             HHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777788875    34466788999999999999876543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.77  E-value=5.5  Score=35.03  Aligned_cols=51  Identities=24%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHHHHH
Q 017105          152 ANIKELRKQRDEGNAYFFQYRALLNEAKAMS--VKKDVQGLKELSNSEVEKYM  202 (377)
Q Consensus       152 e~i~~LRkq~dE~n~~fyq~r~~~~karela--~~~~v~~l~~~~~~eVe~fm  202 (377)
                      ..+..|+.++.+.+..|-...-.+-+..+..  -+.||.+|..+|..||+..|
T Consensus        68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~lv  120 (120)
T PF12325_consen   68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQLV  120 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3444555555555555555444444443333  34599999999999998753

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=91.67  E-value=15  Score=41.44  Aligned_cols=12  Identities=8%  Similarity=0.230  Sum_probs=6.0

Q ss_pred             HHHHHHhHHHHH
Q 017105          213 DDYEKRLLQSLD  224 (377)
Q Consensus       213 ~dY~k~~~~S~~  224 (377)
                      ..|...+...+-
T Consensus       535 ~~y~~Aie~~lg  546 (1164)
T TIGR02169       535 ERYATAIEVAAG  546 (1164)
T ss_pred             HHHHHHHHHHhh
Confidence            455555544443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PHA02562 46 endonuclease subunit; Provisional

Probab=90.64  E-value=24  Score=36.92  Aligned_cols=22  Identities=9%  Similarity=0.099  Sum_probs=11.7

Q ss_pred             HHHHHhCChhhHHHHHHHhHHH
Q 017105          201 YMTLWNNNKAFRDDYEKRLLQS  222 (377)
Q Consensus       201 fm~lwn~~~~FR~dY~k~~~~S  222 (377)
                      ++.-|-.+..||.-+++..++.
T Consensus       407 ~i~~~~~~~g~~~~i~~~~l~~  428 (562)
T PHA02562        407 IVTDLLKDSGIKASIIKKYIPY  428 (562)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH
Confidence            3444444567776555554444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.52  E-value=12  Score=37.42  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105          111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG  164 (377)
Q Consensus       111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~  164 (377)
                      ++..++..|..+...+.+.+..+..|+.++..+........+.+..|..+..+.
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444555555555555555555555555555555544443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.15  E-value=4.6  Score=32.23  Aligned_cols=60  Identities=13%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 017105          108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY  167 (377)
Q Consensus       108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~  167 (377)
                      |..+...++..++.+.-++.........|..+++.+....+.||..+..|+.+.+..-..
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777788888888999999999999999999999999999887776544

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.04  E-value=4.7  Score=36.34  Aligned_cols=63  Identities=17%  Similarity=0.397  Sum_probs=37.2

Q ss_pred             HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105           97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEE--IEALQQEVNDVAEKRDKAFANIKELRK  159 (377)
Q Consensus        97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~e--i~~L~eEl~a~~e~rd~Aye~i~~LRk  159 (377)
                      .+..++.+|..|+.++..++..++.++..+..+...  ...|......+.......-..+..|+.
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455555666666666666666666666666666654  244555555555555555555555554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.71  E-value=18  Score=42.12  Aligned_cols=110  Identities=17%  Similarity=0.263  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHhhhhh----hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017105           72 EKVMANAAMRAKIQESMGK----KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR  147 (377)
Q Consensus        72 ~~V~anaa~~~ki~~s~~~----ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~r  147 (377)
                      +.-+.|..++.. +++++.    +..++++++.+...+..+.+.++.+...|+.++.-+..+..++++|+...-.+...-
T Consensus       382 el~~ln~~~r~~-~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~  460 (1141)
T KOG0018|consen  382 ELEVLNRNMRSD-QDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP  460 (1141)
T ss_pred             HHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence            333444444444 444444    777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 017105          148 DKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS  182 (377)
Q Consensus       148 d~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela  182 (377)
                      .++..++...+.+.......++...+.++....+.
T Consensus       461 ~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave  495 (1141)
T KOG0018|consen  461 YELNEELVEVLDQLLDASADRHEGSRRSRKQEAVE  495 (1141)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence            99999999999999999999999998888766543

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=89.37  E-value=19  Score=33.84  Aligned_cols=186  Identities=16%  Similarity=0.241  Sum_probs=89.8

Q ss_pred             ChhHhhhhhHHHHHHhhhhccccc---cCCCCCCCHHHHHHHHHHHHH------------HHh--hcCcCchHHHHHHHH
Q 017105            1 MDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEELDDLIRSLQY------------RIQ--HEIIPLSEEKQILRE   63 (377)
Q Consensus         1 ~~~K~~Em~~lq~aL~Klr~~~~A---~~~~~~~S~eeiD~~I~~Le~------------~i~--h~sm~L~EEKk~L~E   63 (377)
                      |.+++..|+.|...|..+...-..   +.+....+..++=..+..|=.            .+.  +..++-...+....+
T Consensus         6 F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e   85 (216)
T cd07627           6 FIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQD   85 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777655322211   112233333344333333322            222  112233334455555


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105           64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV  143 (377)
Q Consensus        64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~  143 (377)
                      ...|--+   +..|..+-+.+...|.++..+....-.....|+..+..++.+...-+.-.+++..+..+|..+......+
T Consensus        86 ~~~l~~~---L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a  162 (216)
T cd07627          86 VLTLGVT---LDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASEL  162 (216)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            5555433   5666677777777777777766666555555555555555554311111344444444444444444333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH---HHHHh
Q 017105          144 AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKY---MTLWN  206 (377)
Q Consensus       144 ~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~f---m~lwn  206 (377)
                      ..       ....+......-...|...|.     .++     ...|..|+..+++.+   +++|-
T Consensus       163 ~~-------~~e~is~~~k~El~rF~~~r~-----~df-----k~~l~~~~e~~ie~~k~~ie~We  211 (216)
T cd07627         163 KK-------EFEEVSELIKSELERFERERV-----EDF-----RNSVEIYLESAIESQKELIELWE  211 (216)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33       333333333333333332221     111     245778888888876   77773

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=88.85  E-value=4.2  Score=33.86  Aligned_cols=53  Identities=23%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             hHHhHHHHHHHHHhHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105          108 VKKESQAVWAKISHLEGKVKALDE---EIEALQQEVNDVAEKRDKAFANIKELRKQ  160 (377)
Q Consensus       108 LKKE~dalr~kik~ledk~~ai~~---ei~~L~eEl~a~~e~rd~Aye~i~~LRkq  160 (377)
                      +..+++.+++..+.++..+.....   +...|..+...+..+....-..+..+-.+
T Consensus        41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~   96 (108)
T PF02403_consen   41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE   96 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444433333333333332   24444444444444444443333333333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=88.82  E-value=5.1  Score=32.20  Aligned_cols=68  Identities=13%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             HHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105           95 QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD  162 (377)
Q Consensus        95 qeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d  162 (377)
                      ...|+.++..|..|..+...+...--..+..++.++..+..+..++..+....+..-..+..|+....
T Consensus         4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen    4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK   71 (74)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44566677777777888888877777777777888888888888888888888887777777776543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=88.62  E-value=19  Score=40.70  Aligned_cols=139  Identities=19%  Similarity=0.312  Sum_probs=98.2

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHh--------hccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105           79 AMRAKIQESMGKKEDIQDQVKL--------MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA  150 (377)
Q Consensus        79 a~~~ki~~s~~~ke~iqeqiK~--------~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~A  150 (377)
                      ...+.+..++..++-+++.+..        ...+++..++++..++..+..+..++....-.+..+.++...+.....+.
T Consensus       433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~  512 (775)
T PF10174_consen  433 EALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK  512 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh
Confidence            3446666777777777766533        35677888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-CHHHH----------HHHHHHHHHHHHHHHhCChhhHHHHHH
Q 017105          151 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK-DVQGL----------KELSNSEVEKYMTLWNNNKAFRDDYEK  217 (377)
Q Consensus       151 ye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~-~v~~l----------~~~~~~eVe~fm~lwn~~~~FR~dY~k  217 (377)
                      +..|..|...+...+..+-.--..+.+++..+... .+..|          -.-|.+|||+.|...-+-..=+.+-.+
T Consensus       513 ~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~  590 (775)
T PF10174_consen  513 DSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEK  590 (775)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99999998888888877776666666643222221 22122          345789999999876555444444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=88.18  E-value=40  Score=36.09  Aligned_cols=9  Identities=44%  Similarity=0.464  Sum_probs=3.8

Q ss_pred             hhHHHHHHh
Q 017105          311 VDEAKLREM  319 (377)
Q Consensus       311 ~d~a~lKE~  319 (377)
                      |++++-=+.
T Consensus       490 ve~ak~se~  498 (522)
T PF05701_consen  490 VEAAKASEK  498 (522)
T ss_pred             HHHHHHHHH
Confidence            444444333

Several sequences in this family are described as being myosin heavy chain-like.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=87.89  E-value=33  Score=34.67  Aligned_cols=56  Identities=18%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105          111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA  166 (377)
Q Consensus       111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~  166 (377)
                      +++.++..|..+...+...+..+..++.++..+........+.+..++.+..+...
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444445555555555555555555555555555555555555443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.11  E-value=47  Score=39.29  Aligned_cols=46  Identities=17%  Similarity=0.254  Sum_probs=23.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHH
Q 017105           30 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM   75 (377)
Q Consensus        30 ~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~   75 (377)
                      |.-++.+...|+.+|..+...+-....=+-+-..|+.|++..+.+-
T Consensus       833 ~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q  878 (1293)
T KOG0996|consen  833 AELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ  878 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555666666666644433322222222233777777777664

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.77  E-value=8  Score=35.82  Aligned_cols=57  Identities=21%  Similarity=0.281  Sum_probs=24.8

Q ss_pred             chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105          104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ  160 (377)
Q Consensus       104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq  160 (377)
                      .|..+..++..++..+..+.+.+......+..|++|+.++.-.-.-+-+.+..|..+
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E  173 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE  173 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=86.40  E-value=34  Score=33.31  Aligned_cols=17  Identities=35%  Similarity=0.554  Sum_probs=6.2

Q ss_pred             chHH-HHHHHHHHHHHHh
Q 017105           54 LSEE-KQILREIKQLEGT   70 (377)
Q Consensus        54 L~EE-Kk~L~EI~~L~~~   70 (377)
                      |..+ +.+-.+|..|...
T Consensus        23 LE~~N~~Le~~i~~~~~~   40 (312)
T PF00038_consen   23 LEQENKRLESEIEELREK   40 (312)
T ss_dssp             HHHHHHHHHHHHHH----
T ss_pred             HHHHhhhhHHHHHHHHhc
Confidence            4444 3344556666555

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=86.39  E-value=24  Score=38.41  Aligned_cols=41  Identities=20%  Similarity=0.262  Sum_probs=18.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105          123 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE  163 (377)
Q Consensus       123 edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE  163 (377)
                      .+++..++.++..+..++..+......+...|..|.+++..
T Consensus       427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  467 (650)
T TIGR03185       427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE  467 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=86.06  E-value=53  Score=35.22  Aligned_cols=147  Identities=14%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             hhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Q 017105            8 MEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPL-SEEKQILREIKQLEGTREKVMANAAMRAKIQ-   85 (377)
Q Consensus         8 m~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L-~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~-   85 (377)
                      |.++..++.+|-..-.|+...++..+-++...+..++..+.-.--.| .=|..-++=.+.|..++..|-.....-.... 
T Consensus         4 f~SVk~Avs~FG~~~~~k~~~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~   83 (522)
T PF05701_consen    4 FESVKEAVSLFGGSIDWKKHQSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQA   83 (522)
T ss_pred             ChHHHHHHHHcCCccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999888655555443222223333333333333332111110 0122223333344444443433222211111 


Q ss_pred             ---hhhhhhhhHHHHHHhhccchhh-----hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105           86 ---ESMGKKEDIQDQVKLMGSDLDG-----VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI  154 (377)
Q Consensus        86 ---~s~~~ke~iqeqiK~~~~eLD~-----LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i  154 (377)
                         .+...-+..+-+++.+..++..     .+.+++.++......-..+...+.++..|+.++..+.+.++.|+.+.
T Consensus        84 ~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~a  160 (522)
T PF05701_consen   84 EEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQA  160 (522)
T ss_pred             HHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1111112222234444333332     55666666666666666666666666666666666666666665544

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.04  E-value=33  Score=32.79  Aligned_cols=46  Identities=17%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 017105          129 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL  174 (377)
Q Consensus       129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~  174 (377)
                      +...|..|...+..+-..-+.|-..+..|-.+.+.....++..+..
T Consensus       174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~  219 (237)
T PF00261_consen  174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK  219 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.01  E-value=11  Score=34.95  Aligned_cols=72  Identities=19%  Similarity=0.351  Sum_probs=25.3

Q ss_pred             hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105           90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR  161 (377)
Q Consensus        90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~  161 (377)
                      .+.....++-.+...+..++.++......|..+...+..+...+..|..++.+...-.+-.-.++..|.-++
T Consensus        89 ~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~  160 (194)
T PF08614_consen   89 SKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL  160 (194)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556566666666666666666666665555555555555555555555554444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK01156 chromosome segregation protein; Provisional

Probab=84.97  E-value=54  Score=36.85  Aligned_cols=17  Identities=29%  Similarity=0.511  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHHHHHHhH
Q 017105           55 SEEKQILREIKQLEGTR   71 (377)
Q Consensus        55 ~EEKk~L~EI~~L~~~R   71 (377)
                      .+-+++|.+|-.+..-.
T Consensus       149 ~~r~~~ld~~~~~~~~~  165 (895)
T PRK01156        149 AQRKKILDEILEINSLE  165 (895)
T ss_pred             HHHHHHHHHHhChHHHH
Confidence            45678888887666543

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.93  E-value=11  Score=36.44  Aligned_cols=63  Identities=14%  Similarity=0.347  Sum_probs=40.6

Q ss_pred             ccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105          102 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG  164 (377)
Q Consensus       102 ~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~  164 (377)
                      .++.|.++.++.-++..+.....+++..+++...|..+.+.+..+.|.+.++=..|+.+..-+
T Consensus       150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~  212 (216)
T KOG1962|consen  150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG  212 (216)
T ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence            344555555555555555555566666666677777777777777777777777777776544

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.92  E-value=79  Score=38.48  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHh--ccCHHHHH
Q 017105          169 FQYRALLNEAKAMSV--KKDVQGLK  191 (377)
Q Consensus       169 yq~r~~~~karela~--~~~v~~l~  191 (377)
                      -+....+..|+.+..  .-...+|+
T Consensus       417 qq~i~~Le~~~~~~~~~~~SdEeLe  441 (1486)
T PRK04863        417 QQAVQALERAKQLCGLPDLTADNAE  441 (1486)
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHHH
Confidence            344445556666664  33444444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.92  E-value=10  Score=37.61  Aligned_cols=14  Identities=36%  Similarity=0.665  Sum_probs=10.5

Q ss_pred             HHHHHHhCChhhHH
Q 017105          200 KYMTLWNNNKAFRD  213 (377)
Q Consensus       200 ~fm~lwn~~~~FR~  213 (377)
                      -||...-+.++|=+
T Consensus       118 ~Yidvil~SkSfsD  131 (265)
T COG3883         118 SYIDVILNSKSFSD  131 (265)
T ss_pred             HHHHHHHccCcHHH
Confidence            37888888888843

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.79  E-value=12  Score=35.59  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105          128 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD  162 (377)
Q Consensus       128 ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d  162 (377)
                      ..+..+..|..+...+.++-..+-.++..|..+.+
T Consensus       129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~  163 (206)
T PRK10884        129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD  163 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=84.76  E-value=66  Score=35.19  Aligned_cols=71  Identities=23%  Similarity=0.406  Sum_probs=49.3

Q ss_pred             hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhHHHHHHH
Q 017105          107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK--------------QRDEGNAYFFQYR  172 (377)
Q Consensus       107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk--------------q~dE~n~~fyq~r  172 (377)
                      .+..+.+.++..|-.+.+.+.+......-|..++..+...||.....+-.-|=              ++.+.+..|++-|
T Consensus       280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk  359 (546)
T PF07888_consen  280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK  359 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666677777777777888888888899999999888888777643332              3445556666666


Q ss_pred             HHHHH
Q 017105          173 ALLNE  177 (377)
Q Consensus       173 ~~~~k  177 (377)
                      ..+..
T Consensus       360 ~~l~~  364 (546)
T PF07888_consen  360 QALQH  364 (546)
T ss_pred             HHHHH
Confidence            65543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=84.59  E-value=26  Score=40.61  Aligned_cols=128  Identities=11%  Similarity=0.204  Sum_probs=57.9

Q ss_pred             CchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-------hccchhhhHHhHHHHHHHHHhHHHh
Q 017105           53 PLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKL-------MGSDLDGVKKESQAVWAKISHLEGK  125 (377)
Q Consensus        53 ~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~-------~~~eLD~LKKE~dalr~kik~ledk  125 (377)
                      .+.+....+..|.-|...++.| .|-....+.......++-+...++.       +...+..|..+....+++++.....
T Consensus       220 ~~rer~~~~~~Ie~l~~k~~~v-~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~  298 (1072)
T KOG0979|consen  220 RVRERERKKSKIELLEKKKKWV-EYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE  298 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc-chHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence            3556666666677666555533 2222222222222222222222222       1122223333444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 017105          126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM  181 (377)
Q Consensus       126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karel  181 (377)
                      +.+....+..+.+.++.+.+.-.+++..+..|+.+.+......-+.+..+-.++.-
T Consensus       299 ~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~e  354 (1072)
T KOG0979|consen  299 LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAE  354 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444445555555555555555555555555555555555555555555544443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=84.32  E-value=95  Score=36.66  Aligned_cols=23  Identities=9%  Similarity=0.036  Sum_probs=15.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHhC
Q 017105          185 KDVQGLKELSNSEVEKYMTLWNN  207 (377)
Q Consensus       185 ~~v~~l~~~~~~eVe~fm~lwn~  207 (377)
                      -....+...+.+.+......|..
T Consensus       409 e~~~~~~~~~~~~~~~l~~~~~~  431 (1201)
T PF12128_consen  409 EEKAERREQIEEEYQALEQELRQ  431 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566777777777777764

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.14  E-value=1.1e+02  Score=37.29  Aligned_cols=64  Identities=19%  Similarity=0.153  Sum_probs=32.5

Q ss_pred             hhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHH-HHHHHHHHHHHHhHH
Q 017105            8 MEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEE-KQILREIKQLEGTRE   72 (377)
Q Consensus         8 m~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EE-Kk~L~EI~~L~~~R~   72 (377)
                      +..++++|+..|-+--|-..+ -+--+.+-+.|-.-..-+..-=|.-.+| ..+|.|+...+..|.
T Consensus       232 i~~m~~~l~~~r~t~~~~~~t-q~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~  296 (1486)
T PRK04863        232 FQDMEAALRENRMTLEAIRVT-QSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELY  296 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            566777776665444331111 2223344444544444444444544445 667888866554433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=84.01  E-value=73  Score=35.08  Aligned_cols=20  Identities=20%  Similarity=0.415  Sum_probs=13.1

Q ss_pred             HHHHHhCChhhHHHHHHHhHH
Q 017105          201 YMTLWNNNKAFRDDYEKRLLQ  221 (377)
Q Consensus       201 fm~lwn~~~~FR~dY~k~~~~  221 (377)
                      =++.-+.+ .=|.-|.+||+-
T Consensus       476 e~e~~~k~-~~Rs~Yt~RIlE  495 (594)
T PF05667_consen  476 ELEKLPKD-VNRSAYTRRILE  495 (594)
T ss_pred             HHHhCCCC-CCHHHHHHHHHH
Confidence            34444455 559999998873

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=83.19  E-value=35  Score=30.85  Aligned_cols=125  Identities=21%  Similarity=0.307  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhh-------hHHhHHHHHHHHHhHHHhHHHH
Q 017105           57 EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDG-------VKKESQAVWAKISHLEGKVKAL  129 (377)
Q Consensus        57 EKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~-------LKKE~dalr~kik~ledk~~ai  129 (377)
                      +++-|.-...|+.++..                 ++.+.++|-.+-.+|..       +-.+....++.+..+.+.+..+
T Consensus         2 e~K~l~v~~kLK~~~~e-----------------~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l   64 (140)
T PF10473_consen    2 EEKFLHVEEKLKESESE-----------------KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL   64 (140)
T ss_pred             cHHHHHHHHHHHHHHHh-----------------HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666777776553                 23344444443333332       3333444444555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 017105          130 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMT  203 (377)
Q Consensus       130 ~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~  203 (377)
                      ...+..|..+++.++..++..-..++....+..+.-..-..+.+.+..+-.-     ...+.+-+.+.|+....
T Consensus        65 t~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e-----k~q~~e~~~~~ve~L~~  133 (140)
T PF10473_consen   65 TSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE-----KVQLKEESKSAVEMLQK  133 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666555444445554443331     44455555555554433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=82.82  E-value=99  Score=38.65  Aligned_cols=131  Identities=18%  Similarity=0.313  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhh
Q 017105           33 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEG-----TREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDG  107 (377)
Q Consensus        33 ~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~-----~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~  107 (377)
                      +++++..=..+...+.+-...|..|.+.=.+.-.+++     +-+.-+++........+..-+-...+.+++.+..+++.
T Consensus      1571 ~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~ 1650 (1930)
T KOG0161|consen 1571 DEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELED 1650 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4555555555556666555566666544443333333     11222222222333344444555567777777777777


Q ss_pred             hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105          108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE  163 (377)
Q Consensus       108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE  163 (377)
                      ...-.+++++.+..++.++.++.+++..|...+..+...|.-+=.++.++......
T Consensus      1651 ~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~ 1706 (1930)
T KOG0161|consen 1651 AQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNE 1706 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777766666665555555555444

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=82.79  E-value=30  Score=30.14  Aligned_cols=80  Identities=14%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105           91 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ  170 (377)
Q Consensus        91 ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq  170 (377)
                      +..++.++..+...|.+.|..++.+-.       .-+.+.+.+..|+.+....+....+.-..|..++..++...-.+.+
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~eL~k-------qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~   83 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGELAK-------QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLE   83 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666655555555555554422       2234666677777777777777777777777777777765555545


Q ss_pred             HHHHHHH
Q 017105          171 YRALLNE  177 (377)
Q Consensus       171 ~r~~~~k  177 (377)
                      -...+.+
T Consensus        84 l~~r~~k   90 (107)
T PF09304_consen   84 LESRLLK   90 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=82.78  E-value=18  Score=38.11  Aligned_cols=62  Identities=10%  Similarity=0.220  Sum_probs=39.7

Q ss_pred             hhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105          100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR  161 (377)
Q Consensus       100 ~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~  161 (377)
                      .+...|...+++...+...|+.++..+..+...+......++.+...+...-..|..|..|.
T Consensus        49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33344555566666666666666666666666666666666666666666666666666665

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=82.59  E-value=47  Score=31.90  Aligned_cols=41  Identities=24%  Similarity=0.433  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105          137 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE  177 (377)
Q Consensus       137 ~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k  177 (377)
                      ..++..+......+|.....|+....++...|-+.-..+.+
T Consensus       240 ~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~  280 (296)
T PF13949_consen  240 QKERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNK  280 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            46777777788889999999999999998755444444444

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=82.53  E-value=47  Score=31.87  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 017105          143 VAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA  180 (377)
Q Consensus       143 ~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare  180 (377)
                      +...-+...++|..+|...+.....|-+-|+.|..=++
T Consensus       136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe  173 (202)
T PF06818_consen  136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE  173 (202)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34455666667777777777888888888888887554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=82.00  E-value=34  Score=37.32  Aligned_cols=77  Identities=17%  Similarity=0.337  Sum_probs=59.3

Q ss_pred             hccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105          101 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE  177 (377)
Q Consensus       101 ~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k  177 (377)
                      ...+|+++....+++.+.+..-.-.++.+...+..+...+..+........++++.||+.--+.....-.+++.+..
T Consensus       352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e  428 (570)
T COG4477         352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE  428 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777777778889999999999999999999999999999999654444444444444444

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=81.95  E-value=30  Score=41.08  Aligned_cols=95  Identities=15%  Similarity=0.266  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHH
Q 017105           31 SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKK  110 (377)
Q Consensus        31 ~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKK  110 (377)
                      ++..+++..+.....-+...+++.++=.++-..+..|+++   |.+...+.+++...   -..|.+.+..-+.+|++|..
T Consensus      1201 s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~---l~~~~e~L~~~E~~---Lsdi~~~~~~a~~~LesLq~ 1274 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQ---LQALTEDLPQEEET---LSDITNSLPLAGKDLESLQR 1274 (1758)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhh---hhhhhhccchhhhhHHHHHH
Confidence            4567788888888888888888888888888888777766   55544444443332   23344455555677888888


Q ss_pred             hHHHHHHHHHhHHHhHHHHHH
Q 017105          111 ESQAVWAKISHLEGKVKALDE  131 (377)
Q Consensus       111 E~dalr~kik~ledk~~ai~~  131 (377)
                      +.+.+....++|.+.+..|+.
T Consensus      1275 ~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1275 EFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            888877777777777766664

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=81.84  E-value=32  Score=34.26  Aligned_cols=82  Identities=13%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             HHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 017105           94 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA  173 (377)
Q Consensus        94 iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~  173 (377)
                      +++.|+.....+..++..++.+.+.-..|+.++..-+.++.-.+..|..+...|=...++-..|-.++...-..|...=|
T Consensus       167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR  246 (267)
T PF10234_consen  167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR  246 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555566666666777777666667777777777777777777777777766666666666666666555544443


Q ss_pred             HH
Q 017105          174 LL  175 (377)
Q Consensus       174 ~~  175 (377)
                      .+
T Consensus       247 Nl  248 (267)
T PF10234_consen  247 NL  248 (267)
T ss_pred             hH
Confidence            33

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=81.68  E-value=1.2e+02  Score=35.76  Aligned_cols=19  Identities=37%  Similarity=0.564  Sum_probs=11.1

Q ss_pred             chHHHHHHHHHHHHHHhHH
Q 017105           54 LSEEKQILREIKQLEGTRE   72 (377)
Q Consensus        54 L~EEKk~L~EI~~L~~~R~   72 (377)
                      |.+||.=|..-.+|.+.|.
T Consensus       203 LEeEKeeL~~Yqkldk~rr  221 (1200)
T KOG0964|consen  203 LEEEKEELEKYQKLDKERR  221 (1200)
T ss_pred             HHHhHHHHHHHHHHHHhHh
Confidence            5555555555555555555

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.40  E-value=1.2e+02  Score=35.71  Aligned_cols=102  Identities=16%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---
Q 017105          104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA---  180 (377)
Q Consensus       104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare---  180 (377)
                      .+..+.++++....++.+-...++.-..++..|+-+..++...++..-..+..+..+.+..-...-+.+-.+..+..   
T Consensus       788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~  867 (1174)
T KOG0933|consen  788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK  867 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence            34445555555555555555555555555666666666666666655555555555554444333333333322111   


Q ss_pred             --HHhccCHHHHHHHHHHHHHHHHHHH
Q 017105          181 --MSVKKDVQGLKELSNSEVEKYMTLW  205 (377)
Q Consensus       181 --la~~~~v~~l~~~~~~eVe~fm~lw  205 (377)
                        .+.=.+..+-+..|++|...++..|
T Consensus       868 ~~~~el~~~k~k~~~~dt~i~~~~~~~  894 (1174)
T KOG0933|consen  868 KAQAELKDQKAKQRDIDTEISGLLTSQ  894 (1174)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence              0122234445556677777777766

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=80.34  E-value=60  Score=31.59  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=11.3

Q ss_pred             hhhhhHHHHHH----hhhhccc
Q 017105            5 RKEMEPLHQAL----GKLRTTN   22 (377)
Q Consensus         5 ~~Em~~lq~aL----~Klr~~~   22 (377)
                      +.+|..|.+.|    .|+|.+.
T Consensus         3 K~eL~~LNdRla~YIekVr~LE   24 (312)
T PF00038_consen    3 KEELQSLNDRLASYIEKVRFLE   24 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777777    4666544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 62/442 (14%), Positives = 132/442 (29%), Gaps = 121/442 (27%)

Query: 5   RKE-MEPLHQALGKLRTTNN------------------ARS--------GGI-------C 30
           R +    L QAL +LR   N                    S          I       C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 31  SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGK 90
           +S E + ++++ L Y+I       S+         ++   + +      +R  ++    +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSIQAE------LRRLLKSKPYE 244

Query: 91  K-----EDIQD---------QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 136
                  ++Q+           K++      +    + V   +S       +LD     L
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKIL------LTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 137 -QQEVNDVAEKRDKAFANIK--ELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKEL 193
              EV  +  K    + + +  +L ++    N      R L     ++  +    GL   
Sbjct: 299 TPDEVKSLLLK----YLDCRPQDLPREVLTTNP-----RRL-----SIIAESIRDGLATW 344

Query: 194 SNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK-PLVVAET----S 248
            N    K++                 L+  + R++     +  P    P ++        
Sbjct: 345 DNW---KHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 249 VPSEPEIVAKPNVKQS--KGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPA 306
           + S+  +V     K S  +   K ++   ++P+  ++    K + E+       +V+   
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLEL---KVKLENEYALHRSIVDHYN 454

Query: 307 SEKKVDEAK-----------------LREMKKEEDRAKAREG------MERK-RKKEEAK 342
             K  D                    L+ ++  E     R        +E+K R    A 
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 343 VAKAALRAEKQRKEIIYGTYFF 364
            A  ++    Q+ +  Y  Y  
Sbjct: 515 NASGSILNTLQQLK-FYKPYIC 535

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 27/164 (16%), Positives = 72/164 (43%), Gaps = 4/164 (2%)

Query: 1    MDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 60
            +  +RK +E     L         ++  +   + + + +I  L+ R++ E     E ++I
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 61   LREI-KQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119
             R++  +     E++    A  A+++  + KKE+   +++   + L+    +      KI
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE---ELQAALARLEDETSQKNNALKKI 1118

Query: 120  SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163
              LE  +  L E++E+ +   N   +++      ++ L+ + ++
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.23
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.24
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.39
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	89.99
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	89.11
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	88.28
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	85.99
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	85.93
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	84.17
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	84.16
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.08
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.57

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.23  E-value=0.63  Score=43.37  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=43.7

Q ss_pred             cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 017105          103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK  179 (377)
Q Consensus       103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kar  179 (377)
                      .+++.|.++++.+...+..+++.+..+...+..+...+..+.......-.++..++.+++......-.-...+.+.+
T Consensus        90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r  166 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKK  166 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666666666666666666666666666555565555555555544444444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.24  E-value=1.9  Score=40.04  Aligned_cols=127  Identities=17%  Similarity=0.215  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhH
Q 017105           33 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKES  112 (377)
Q Consensus        33 ~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~  112 (377)
                      .-.||..|..|.+++.+-          -.+|..|+.....+      ...+...-..-+.+..+++.+..+|+.++..+
T Consensus        13 LQ~lD~~i~~l~~~~~~l----------p~el~~le~~~~~l------~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri   76 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREK----------RKDLDKALNDKEAK------NKAILNLEEEKLALKLQVSKNEQTLQDTNAKI   76 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHH----------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999888773          24455554443322      12222222233334444555455555555555


Q ss_pred             HHHHHHHHhH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 017105          113 QAVWAKISHL--EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL  175 (377)
Q Consensus       113 dalr~kik~l--edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~  175 (377)
                      ...+.++..+  ...+.++..+|..+..+...+.+....+.+.+..+..........+-.....+
T Consensus        77 ~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l  141 (256)
T 3na7_A           77 ASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA  141 (256)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555443  23455555566666666666666666666666666555555554444444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.39  E-value=6.2  Score=44.20  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHhhc---CcCchHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccch
Q 017105           34 EELDDLIRSLQYRIQHE---IIPLSEE-----KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDL  105 (377)
Q Consensus        34 eeiD~~I~~Le~~i~h~---sm~L~EE-----Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eL  105 (377)
                      ..|...|..|+.+++..   ...|.++     .....|++.|+..-+.+..          ...+.......++.+..++
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~----------~~~e~~~~~~~v~~L~~e~  993 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM----------SEEEAKNATNRVLSLQEEI  993 (1080)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHTHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence            45555566666655442   2233332     3455666666555333322          2223334444555544444


Q ss_pred             hhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105          106 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN  165 (377)
Q Consensus       106 D~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n  165 (377)
                      +.++.+++.+....+.+++       .+..+++++   .++....-.+...||.|.++.+
T Consensus       994 ~~l~~~~~~~~ke~~~lee-------~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          994 AKLRKELHQTQTEKKTIEE-------WADKYKHET---EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444433333       333333222   2333334444455555555555

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=89.99  E-value=5.8  Score=32.22  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHH
Q 017105           55 SEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE  134 (377)
Q Consensus        55 ~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~  134 (377)
                      .+|..++.|+..|.+.+..|-+                    .|..+..+...+..+-...+.       .+....-+.-
T Consensus        18 ~eE~~L~~eL~~lEke~~~l~~--------------------el~~le~E~~~L~~eE~~~w~-------eyn~~~~ql~   70 (96)
T 3q8t_A           18 LEEERLIQELEDVEKNRKVVAE--------------------NLEKVQAEAERLDQEEAQYQR-------EYSEFKRQQL   70 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHH--------------------HHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHH
Confidence            4677788888888887775422                    222222222333333333332       2344555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105          135 ALQQEVNDVAEKRDKAFANIKELRK  159 (377)
Q Consensus       135 ~L~eEl~a~~e~rd~Aye~i~~LRk  159 (377)
                      .++.+++.+..+.+-+-..+..|++
T Consensus        71 e~~dE~~Sl~~q~~~~~~qLdkL~K   95 (96)
T 3q8t_A           71 ELDDELKSVENQMRYAQMQLDKLKK   95 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6666666666666666666666654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=89.11  E-value=7.5  Score=43.54  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=14.3

Q ss_pred             HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017105          114 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEK  146 (377)
Q Consensus       114 alr~kik~ledk~~ai~~ei~~L~eEl~a~~e~  146 (377)
                      .....++.+++++..++.++..+..+..++.+.
T Consensus       981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=88.28  E-value=12  Score=32.28  Aligned_cols=10  Identities=20%  Similarity=0.155  Sum_probs=4.0

Q ss_pred             hhhHHHHHHh
Q 017105            7 EMEPLHQALG   16 (377)
Q Consensus         7 Em~~lq~aL~   16 (377)
                      .|..+...+.
T Consensus         7 ~~~~l~~~~~   16 (284)
T 1c1g_A            7 KMQMLKLDKE   16 (284)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhHH
Confidence            3444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=85.99  E-value=15  Score=45.77  Aligned_cols=41  Identities=22%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             hhHhhhhhHHHHHH----hhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhc
Q 017105            2 DDKRKEMEPLHQAL----GKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHE   50 (377)
Q Consensus         2 ~~K~~Em~~lq~aL----~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~   50 (377)
                      .+|++++...++.|    .||.++..        .|+++...+..++-.+...
T Consensus      1909 ~~K~~el~~~~~rl~~GL~KL~et~~--------~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A         1909 NEKRDQLEEEQLHLNIGLKKLRDTEA--------QVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            45777776655555    58887554        3777777777777766554

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.93  E-value=5.1  Score=33.07  Aligned_cols=61  Identities=20%  Similarity=0.316  Sum_probs=47.6

Q ss_pred             HhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105          110 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ  170 (377)
Q Consensus       110 KE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq  170 (377)
                      .+++.++..|..++..+..++.++..|..++..-...|..+=.....+-.++.+..+..|+
T Consensus         5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe   65 (97)
T 2eqb_B            5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD   65 (97)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555566888888899999999999999999999999999999998886

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=84.17  E-value=9  Score=32.49  Aligned_cols=70  Identities=17%  Similarity=0.286  Sum_probs=52.9

Q ss_pred             hhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105           89 GKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG  164 (377)
Q Consensus        89 ~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~  164 (377)
                      +.++.++++++.   +|+.|+.+++.+.   ......+..+...|..|..++..-...++.|...-..||.+....
T Consensus        11 d~rD~~Ie~Lkr---eie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l   80 (120)
T 3i00_A           11 DEKDHLIERLYR---EISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL   80 (120)
T ss_dssp             CTHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666555543   5666666666664   234456777889999999999999999999999999999887754

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=84.16  E-value=8.9  Score=32.33  Aligned_cols=64  Identities=19%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105          111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA  178 (377)
Q Consensus       111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka  178 (377)
                      +++.+..++..+++.+.+...+|+.|..+...    +++..+.|..|+.|.+--..+|..-|.+.-++
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aERadREkl   88 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKL   88 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Confidence            45555566666666667777777777776554    67777899999999999999999998877763

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.08  E-value=13  Score=32.00  Aligned_cols=59  Identities=17%  Similarity=0.165  Sum_probs=34.2

Q ss_pred             hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105          107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN  165 (377)
Q Consensus       107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n  165 (377)
                      .++.+.+.+...+..+..++..++.++.+++.+.+.+.....+.-..++.|..+.-...
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555666666666666666666666666666666655554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	82.9

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.90  E-value=12  Score=31.19  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=13.5

Q ss_pred             HHHHHHHHhhcCcCchHHHHHHHHHHHHH
Q 017105           40 IRSLQYRIQHEIIPLSEEKQILREIKQLE   68 (377)
Q Consensus        40 I~~Le~~i~h~sm~L~EEKk~L~EI~~L~   68 (377)
                      ...|..++.+|.-.+.+=..++++...++
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~eRa~iE   39 (288)
T d2efla1          11 FDNLEKHTQWGIDILEKYIKFVKERTEIE   39 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555444444444444444443