Citrus Sinensis ID: 017108

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVF
Secondary Structure (PSIPRED)
ccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccccEEEcccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccEcccHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHHccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MNHHSIISvtknesnkgvsqsccsalspihnfqtecqslstgeypfphpspfirkeslsspnrmqastvvpkenglistsdspispgshfqhskggfsrssVFCTSLYlsssassethrqignfpflphprtfnqsvsavdstksslLFSEDMGNAYQEEHSESLMKGflnfpedasdgsfpgvtcmgerlglnehlelqflsdeldiditdhgenprldeiydapksslkppmglsckenyvssappvdalsshtspasatahkprmrwtpeLHECFVEAVnkldgpekatPKAVLKLMNVEGLTIYHVKSHLQKYRLAkympekkeekktcsseekkatssiesdgrkkgsIQFTEALRMQMEVQKQLHEQLEVF
Flexible Loop (DISEMBL)
MNHHSIISvtknesnkgvSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKympekkeekktcsseekkatssiesdgrkkgSIQFTEALRMQMEVQKQLHEQLEVF
Low Complexity Region (SEG)
MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTslylsssassETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDalsshtspasatahKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPekkeekktcsseekkatssIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVF
Disordered region (IsUnstruct)
*************************L**IHNF*********************************************************************VFCTSLYL***********************************************************************FPGVTCMGERLGLNEHLELQFLSDELDIDIT**********************************************************WTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKY*******************************************************
Disordered Region (DISOPRED)
*******************************************************************************************************************************************************************SLMKGF*******************************FLS******************************************************************WTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY******************************************LRMQMEVQKQLHEQLEVF
Disordered Region (DISEMBL)
MNHHSIISVT*************SALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSP************GFSRSSVFCTSLYL*********RQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPV*****************RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP***************************GSIQFTEALRMQMEVQKQLHEQLEVF
Disordered Region (DISPRO)
**HHSIISVTKNESNKGVSQSCCSALSP*************************************************************************************************************************************SESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGE**************************************************PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP****************************SIQFTEALRMQMEVQKQLHEQLEVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.328	0.300	0.627	1e-35
Q9SAK5	358	Myb family transcription	no	no	0.294	0.310	0.482	1e-24
Q700D9	255	Putative Myb family trans	no	no	0.140	0.207	0.716	7e-16
Q9C616	388	Probable transcription fa	no	no	0.220	0.213	0.479	2e-15
Q0J235	532	Probable transcription fa	no	no	0.206	0.146	0.494	8e-15
Q941I2	322	Probable transcription fa	no	no	0.183	0.214	0.536	2e-14
Q9FJV5	276	Probable transcription fa	no	no	0.148	0.202	0.660	3e-14
Q93WJ9	403	Transcription repressor K	no	no	0.169	0.158	0.578	3e-14
Q940D0	690	Two-component response re	no	no	0.143	0.078	0.636	3e-12
Q9FGT7	635	Two-component response re	no	no	0.209	0.124	0.481	4e-12

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 94/129 (72%), Gaps = 5/129 (3%)

Query: 250 DALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYH 309
           D LS   S +S    K RMRWTPELHE FVEAVN+L G E+ATPKAVLKL+N  GLTIYH
Sbjct: 216 DQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYH 275

Query: 310 VKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATS--SIESDGRKKGSIQFTEALRMQMEVQ 367
           VKSHLQKYR A+Y PE  E   T   +EKK TS   I+S   K  S++ T+ALR+QMEVQ
Sbjct: 276 VKSHLQKYRTARYKPETSE--VTGEPQEKKMTSIEDIKSLDMKT-SVEITQALRLQMEVQ 332

Query: 368 KQLHEQLEV 376
           K+LHEQLE+
Sbjct: 333 KRLHEQLEI 341

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
           KPR+RWT ELHE FV+AV +L GP+KATPK ++++M V+GLT+YH+KSHLQK+RL K  P
Sbjct: 34  KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92

Query: 325 EKKEEKKTCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
            K+    +     + +   I+ +      +       MQMEVQ++LHEQLEV
Sbjct: 93  HKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEV 144

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 43/53 (81%)

Query: 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318
           PR+RWTPELH  FV AV+ L G  KATPK VLK+M+V+GLTI HVKSHLQ YR
Sbjct: 24  PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 13/96 (13%)

Query: 258 PASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317
           PA  +   PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ Y
Sbjct: 206 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

Query: 318 RLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGS 353
           R             T  + +K A SS +SD  + GS
Sbjct: 266 R-------------TVKTTDKAAASSGQSDVYENGS 288

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 54/91 (59%), Gaps = 13/91 (14%)

Query: 258 PASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317
           PA  +   PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ Y
Sbjct: 317 PAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 376

Query: 318 RLAKYMPEKKEEKKTCSSEEKKATSSIESDG 348
           R             T  S +K A SS  +DG
Sbjct: 377 R-------------TVKSTDKPAASSGPADG 394

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 51/82 (62%), Gaps = 13/82 (15%)

Query: 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPE 325
           PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ YR       
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYR------- 217

Query: 326 KKEEKKTCSSEEKKATSSIESD 347
                 T  S EK  TSS +SD
Sbjct: 218 ------TIKSTEKPTTSSGQSD 233

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 42/56 (75%)

Query: 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
           PRMRWT  LH  FV AV  L G E+ATPK+VL+LMNV+ LT+ HVKSHLQ YR  K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 44/64 (68%)

Query: 258 PASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317
           P   +   PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ Y
Sbjct: 212 PTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 271

Query: 318 RLAK 321
           R  K
Sbjct: 272 RTVK 275

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319
           KPR+ W+ ELH+ FV AVN+L G EKA PK +L+LMNV GLT  +V SHLQKYR+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 253 SSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKS 312
           S      S T  KPR+ W+ ELH+ FV AV +L G +KA PK +L LM++EGLT  +V S
Sbjct: 182 SEQDGDGSGTRKKPRVVWSQELHQKFVSAVQQL-GLDKAVPKKILDLMSIEGLTRENVAS 240

Query: 313 HLQKYRL-AKYMPEKKEEKKT 332
           HLQKYRL  K + E +++  T
Sbjct: 241 HLQKYRLYLKKIDEGQQQNMT 261

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
255544460	536	transcription factor, putative [Ricinus	0.957	0.673	0.648	1e-122
359483278	502	PREDICTED: uncharacterized protein LOC10	0.992	0.745	0.607	1e-112
224122790	423	predicted protein [Populus trichocarpa]	0.830	0.739	0.694	1e-112
224097311	408	predicted protein [Populus trichocarpa]	0.774	0.715	0.710	1e-110
147841484	503	hypothetical protein VITISV_010096 [Viti	0.992	0.743	0.590	1e-109
297735683	462	unnamed protein product [Vitis vinifera]	0.901	0.735	0.575	1e-108
18399836	449	myb-like HTH transcriptional regulator f	0.912	0.766	0.530	9e-96
15795136	554	transfactor-like protein [Arabidopsis th	0.912	0.620	0.530	1e-95
21536970	443	transfactor-like protein [Arabidopsis th	0.912	0.776	0.527	6e-95
297834112	445	hypothetical protein ARALYDRAFT_478672 [	0.915	0.775	0.535	5e-94

>gi|255544460|ref|XP_002513291.1| transcription factor, putative [Ricinus communis] gi|223547199|gb|EEF48694.1| transcription factor, putative [Ricinus communis]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/367 (64%), Positives = 279/367 (76%), Gaps = 6/367 (1%)

Query: 14  SNKGVSQSCCSALSPIHNF---QTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVV 70
           S+KG++Q   + LSP+H+F   ++E QS  T E+    PSPF+  +SLS PN MQ S V 
Sbjct: 63  SSKGITQPYFTTLSPVHDFFNSESEGQSCLTSEFSSSRPSPFMLTDSLS-PNTMQ-SIVQ 120

Query: 71  PKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHP 130
           P +  L S  D P+SP SH QHSK  F RSSVFCTSLYLSSS+SSET+RQ+GN PFLPHP
Sbjct: 121 PPKYFLKSGPDMPLSPASHIQHSKSTFQRSSVFCTSLYLSSSSSSETNRQLGNLPFLPHP 180

Query: 131 RTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGER 190
                S+SA+DSTKS LLF++D+ N Y EEHS+ LMK F+NFP DAS  SF G+TC  + 
Sbjct: 181 SAHAHSLSAIDSTKSPLLFTDDISNPYDEEHSDCLMKDFVNFPGDASRSSFHGMTCASDN 240

Query: 191 LGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVD 250
           L L + LELQFLSDELDI ITDHGENPR+DEIY+ P++S  P +G +C  N  S  P  D
Sbjct: 241 LVLADQLELQFLSDELDIAITDHGENPRVDEIYETPEASSNPAIGSTCNLNVASVKPSAD 300

Query: 251 ALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHV 310
           A SSH SP +A  HKPRMRWTPELHE FVEA+ KL G EKATPK VLKLMNVEGLTIYHV
Sbjct: 301 APSSHPSPGTAAVHKPRMRWTPELHESFVEAIIKLGGAEKATPKGVLKLMNVEGLTIYHV 360

Query: 311 KSHLQKYRLAKYMPEKKEEKK-TCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQ 369
           KSHLQKYR+AKY+P+KKEEKK +CS E+K A+SS ESD +KKG  Q TEALRMQMEVQKQ
Sbjct: 361 KSHLQKYRIAKYLPDKKEEKKASCSEEKKAASSSTESDNQKKGMTQITEALRMQMEVQKQ 420

Query: 370 LHEQLEV 376
           LHEQLEV
Sbjct: 421 LHEQLEV 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483278|ref|XP_002269813.2| PREDICTED: uncharacterized protein LOC100244458 [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/382 (60%), Positives = 273/382 (71%), Gaps = 8/382 (2%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNF---QTECQSLSTGEYPFPHPSPFIRKES 57
           MNHHS++S  + ES KG +QS C+A+SPIHN    + E Q+    +    H S F + E 
Sbjct: 9   MNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEGQNSFKSDCSSSH-SRFTQTEL 67

Query: 58  LSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSET 117
               N MQAS V P++    S   S +S  +  Q+ K  FSRSSVFCTSLYLSSS+S+ET
Sbjct: 68  PGPANFMQASVVQPQKLCSKSGPYSSVSSDTDAQYPKCTFSRSSVFCTSLYLSSSSSTET 127

Query: 118 HRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDAS 177
           HR +GN PFLPHP    QS+SAV STK+  L S D    Y E +SE +MKGFLN   DAS
Sbjct: 128 HRPLGNLPFLPHPSMSYQSISAVHSTKTPFL-SGDSSGLYDEGNSEDMMKGFLNLSSDAS 186

Query: 178 DGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPM--G 235
           D SF  + C  + +  +E LELQFLSDELDI I D+GENPRLDEIY+ P+ S  P M  G
Sbjct: 187 DESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDSSTPAMALG 246

Query: 236 LSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKA 295
           L+  +N+ S AP  DA S   SP +A AHKPRMRWTPELHE F+EAVNKL+G EKATPK 
Sbjct: 247 LTVNQNHQSVAPSTDASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEGAEKATPKG 306

Query: 296 VLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSS-IESDGRKKGSI 354
           VLKLMN+EGLTIYHVKSHLQKYRLAKYMPE+KE+KK   SEEKKA SS  ESDGR+KG+I
Sbjct: 307 VLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEKKAASSNNESDGRRKGNI 366

Query: 355 QFTEALRMQMEVQKQLHEQLEV 376
           Q TEALR+QMEVQKQLHEQLEV
Sbjct: 367 QITEALRLQMEVQKQLHEQLEV 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122790|ref|XP_002330480.1| predicted protein [Populus trichocarpa] gi|222871892|gb|EEF09023.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/314 (69%), Positives = 244/314 (77%), Gaps = 1/314 (0%)

Query: 64  MQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGN 123
           MQ STV  ++    S  DSP+S   H Q SK  F RSSVFCTSLYLSSS+ SET+RQ+GN
Sbjct: 1   MQVSTVQHQKYHPKSGPDSPVSLAYHVQLSKSTFQRSSVFCTSLYLSSSSISETNRQLGN 60

Query: 124 FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPG 183
           FPFLPHP T++QSVSA DSTKS  L SED+ + + EE S+  M  FLN   DAS+G F G
Sbjct: 61  FPFLPHPPTYSQSVSATDSTKSPQLVSEDLSSPFDEERSDGFMIDFLNLSGDASEGGFHG 120

Query: 184 VTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYV 243
           + C  + L L E LELQFLSDELDI ITDHGENPRLDEIY  P++S KP  G +C +N+ 
Sbjct: 121 MNCTSDNLELTEQLELQFLSDELDIAITDHGENPRLDEIYGTPETSSKPVTGFACYQNFP 180

Query: 244 SSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVE 303
           S APPVDALSS  S  S+TAHKPRMRWT ELHE F++AVNKLDG EKATPK VLKLMNVE
Sbjct: 181 SIAPPVDALSSQPSLGSSTAHKPRMRWTTELHERFLDAVNKLDGAEKATPKGVLKLMNVE 240

Query: 304 GLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATS-SIESDGRKKGSIQFTEALRM 362
           GLTIYHVKSHLQKYRLAKY PEKKEEKK   SEEKKA S  I+ DG+KKG+IQ TEALRM
Sbjct: 241 GLTIYHVKSHLQKYRLAKYFPEKKEEKKASCSEEKKAVSIIIDDDGKKKGTIQITEALRM 300

Query: 363 QMEVQKQLHEQLEV 376
           QMEVQKQLHEQLEV
Sbjct: 301 QMEVQKQLHEQLEV 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097311|ref|XP_002310903.1| predicted protein [Populus trichocarpa] gi|222853806|gb|EEE91353.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/297 (71%), Positives = 241/297 (81%), Gaps = 5/297 (1%)

Query: 81  DSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAV 140
           DSP+SP SH Q SK  F RSSVFCTSLYLSSS+ SET+RQ+GN PFLPHP T++ SVSA 
Sbjct: 9   DSPLSPTSHVQSSKSTFQRSSVFCTSLYLSSSSISETNRQLGNLPFLPHPPTYSHSVSAT 68

Query: 141 DSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQ 200
           DSTKS LLFSED+ N   EEHS++ MK FLN   +AS+GSF G+   G+ L L E LELQ
Sbjct: 69  DSTKSPLLFSEDLSNQCDEEHSDAFMKDFLNLSGNASEGSFHGMNYTGDNLELTEQLELQ 128

Query: 201 FLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPAS 260
           FLSDEL+I ITDHGENP LDEIY   ++S KP  G +C ++    +P VDALSSH SP S
Sbjct: 129 FLSDELEIAITDHGENPGLDEIYGTHETSSKPATGFACNQD----SPSVDALSSHPSPGS 184

Query: 261 ATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320
           +TAHKPRMRWTPELHE FVEAVNKLDG EKATPK VLKLMNV+GLTIYHVKSHLQKYRLA
Sbjct: 185 STAHKPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVKGLTIYHVKSHLQKYRLA 244

Query: 321 KYMPEKKEEKK-TCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
           KY+PEKKEEKK +CS E+K A+ +I+ D +KKG+IQ TEALRMQMEVQKQLHEQLEV
Sbjct: 245 KYLPEKKEEKKASCSEEKKVASINIDGDVKKKGTIQITEALRMQMEVQKQLHEQLEV 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841484|emb|CAN64238.1| hypothetical protein VITISV_010096 [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/391 (59%), Positives = 273/391 (69%), Gaps = 17/391 (4%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNF---QTECQSLSTGEYPFPHPSPFIRKES 57
           MNHHS++S  + ES KG +QS C+A+SPIHN    + E Q+    +    H S F + E 
Sbjct: 1   MNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEGQNSFKSDCSSSH-SRFTQTEL 59

Query: 58  LSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSET 117
               N MQAS V P++    S   S +S  +  Q+ K  FSRSSVFCTSLYLSSS+S+ET
Sbjct: 60  PGPANFMQASVVQPQKLCSKSGPYSSVSSDTDAQYPKCTFSRSSVFCTSLYLSSSSSTET 119

Query: 118 HRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDAS 177
           HR +GN PFLPHP    QS+SAV STK+  L S D    Y E +SE +MKGFLN   DAS
Sbjct: 120 HRPLGNLPFLPHPSMSYQSISAVHSTKTPFL-SGDSSGLYDEGNSEDMMKGFLNLSSDAS 178

Query: 178 DGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPM--G 235
           D SF  + C  + +  +E LELQFLSDELDI I D+GENPRLDEIY+ P+ S  P M  G
Sbjct: 179 DESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDSSTPAMALG 238

Query: 236 LSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPE------ 289
           L+  +N+ S AP  DA S   SP +A AHKPRMRWTPELHE F+EAVNKL+G E      
Sbjct: 239 LTVNQNHQSVAPSADASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEGAESLPILL 298

Query: 290 ---KATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSS-IE 345
              +ATPK VLKLMN+EGLTIYHVKSHLQKYRLAKYMPE+KE+KK   SEEKKA SS  E
Sbjct: 299 WNVEATPKGVLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEKKAASSNNE 358

Query: 346 SDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
           SDGR+KG+IQ TEALR+QMEVQKQLHEQLEV
Sbjct: 359 SDGRRKGNIQITEALRLQMEVQKQLHEQLEV 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735683|emb|CBI18370.3| unnamed protein product [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/384 (57%), Positives = 260/384 (67%), Gaps = 44/384 (11%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNF-----QTECQSLSTGEYPFPHPSPFIRK 55
           MNHHS++S  + ES KG +QS C+A+SPIHN      + + Q L +   P+         
Sbjct: 1   MNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEVQPQKLCSKSGPY--------- 51

Query: 56  ESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASS 115
                                     S +S  +  Q+ K  FSRSSVFCTSLYLSSS+S+
Sbjct: 52  --------------------------SSVSSDTDAQYPKCTFSRSSVFCTSLYLSSSSST 85

Query: 116 ETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPED 175
           ETHR +GN PFLPHP    QS+SAV STK+  L S D    Y E +SE +MKGFLN   D
Sbjct: 86  ETHRPLGNLPFLPHPSMSYQSISAVHSTKTPFL-SGDSSGLYDEGNSEDMMKGFLNLSSD 144

Query: 176 ASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPM- 234
           ASD SF  + C  + +  +E LELQFLSDELDI I D+GENPRLDEIY+ P+ S  P M 
Sbjct: 145 ASDESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDSSTPAMA 204

Query: 235 -GLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATP 293
            GL+  +N+ S AP  DA S   SP +A AHKPRMRWTPELHE F+EAVNKL+G EKATP
Sbjct: 205 LGLTVNQNHQSVAPSTDASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEGAEKATP 264

Query: 294 KAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSS-IESDGRKKG 352
           K VLKLMN+EGLTIYHVKSHLQKYRLAKYMPE+KE+KK   SEEKKA SS  ESDGR+KG
Sbjct: 265 KGVLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEKKAASSNNESDGRRKG 324

Query: 353 SIQFTEALRMQMEVQKQLHEQLEV 376
           +IQ TEALR+QMEVQKQLHEQLEV
Sbjct: 325 NIQITEALRLQMEVQKQLHEQLEV 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399836|ref|NP_566442.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] gi|42572405|ref|NP_974298.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] gi|15292911|gb|AAK92826.1| unknown protein [Arabidopsis thaliana] gi|20465679|gb|AAM20308.1| unknown protein [Arabidopsis thaliana] gi|332641760|gb|AEE75281.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] gi|332641761|gb|AEE75282.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 201/379 (53%), Positives = 244/379 (64%), Gaps = 35/379 (9%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN H ++S   +E NK + Q+C S+LSP+HNF            P    +PFIR +S  S
Sbjct: 7   MNRHRLLSAATDECNKKLGQACSSSLSPVHNF--------LNVQPEHRKTPFIRSQSPDS 58

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
           P ++             ST                       FCT+LYLSSS++SET + 
Sbjct: 59  PGQLWPKNSSQSTFSRSST-----------------------FCTNLYLSSSSTSETQKH 95

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P ++  S S V+S +S  +F+ED+GN     +S SL+K FLN   DA SD
Sbjct: 96  LGNSLPFLPDPSSYTHSASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSD 155

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS 
Sbjct: 156 GDFHDFGCSNDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSP 214

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V  A  VD +SSH SP SA   K RMRWTPELHE FV+AV KL+GPEKATPKAV K
Sbjct: 215 SQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKK 274

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK+T +SEEKK A S  E+D +KKG+IQ T
Sbjct: 275 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLT 334

Query: 358 EALRMQMEVQKQLHEQLEV 376
           EALRMQMEVQKQLHEQLEV
Sbjct: 335 EALRMQMEVQKQLHEQLEV 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15795136|dbj|BAB02514.1| transfactor-like protein [Arabidopsis thaliana]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/379 (53%), Positives = 244/379 (64%), Gaps = 35/379 (9%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN H ++S   +E NK + Q+C S+LSP+HNF            P    +PFIR +S  S
Sbjct: 7   MNRHRLLSAATDECNKKLGQACSSSLSPVHNF--------LNVQPEHRKTPFIRSQSPDS 58

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
           P ++             ST                       FCT+LYLSSS++SET + 
Sbjct: 59  PGQLWPKNSSQSTFSRSST-----------------------FCTNLYLSSSSTSETQKH 95

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P ++  S S V+S +S  +F+ED+GN     +S SL+K FLN   DA SD
Sbjct: 96  LGNSLPFLPDPSSYTHSASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSD 155

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS 
Sbjct: 156 GDFHDFGCSNDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSP 214

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V  A  VD +SSH SP SA   K RMRWTPELHE FV+AV KL+GPEKATPKAV K
Sbjct: 215 SQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKK 274

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK+T +SEEKK A S  E+D +KKG+IQ T
Sbjct: 275 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLT 334

Query: 358 EALRMQMEVQKQLHEQLEV 376
           EALRMQMEVQKQLHEQLEV
Sbjct: 335 EALRMQMEVQKQLHEQLEV 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536970|gb|AAM61311.1| transfactor-like protein [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 200/379 (52%), Positives = 243/379 (64%), Gaps = 35/379 (9%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN H ++S   +E NK + Q+C S+LSP+HNF            P    +PFIR +S  S
Sbjct: 1   MNRHRLLSAATDECNKKLGQACSSSLSPVHNF--------LNVQPEHRKTPFIRSQSPDS 52

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
           P ++             ST                       FCT+LYLSSS++SET + 
Sbjct: 53  PGQLWPKNSSQSTFSRSST-----------------------FCTNLYLSSSSTSETQKH 89

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P ++  S S V+S +S  +F+ED+GN     +S SL+K FLN   DA SD
Sbjct: 90  LGNSLPFLPDPSSYTHSASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSD 149

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS 
Sbjct: 150 GDFHDFGCSNDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSP 208

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V  A  VD +SSH SP SA   K RMRWTPELHE FV+AV KL+GPEKATPKAV K
Sbjct: 209 SQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKK 268

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK+T +SEEKK A S  E+D +KKG+IQ T
Sbjct: 269 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLT 328

Query: 358 EALRMQMEVQKQLHEQLEV 376
           EALRMQMEVQKQLHEQ EV
Sbjct: 329 EALRMQMEVQKQLHEQQEV 347

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834112|ref|XP_002884938.1| hypothetical protein ARALYDRAFT_478672 [Arabidopsis lyrata subsp. lyrata] gi|297330778|gb|EFH61197.1| hypothetical protein ARALYDRAFT_478672 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 203/379 (53%), Positives = 254/379 (67%), Gaps = 34/379 (8%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN +S++S   +E NKGV Q+C ++ SP+HNF            P    SPFIR +S  S
Sbjct: 1   MNRYSLVSTATDECNKGVVQTCSTSPSPVHNF--------LNVQPEHRKSPFIRSQSPDS 52

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
             ++    +                       S+  FSRSS FCT+LYLSSS++SET + 
Sbjct: 53  TGQLWPKNI-----------------------SQSTFSRSSTFCTNLYLSSSSTSETQKH 89

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P +++ S S V+S +S  +FSED+GN    ++S SL+K FLN   DA SD
Sbjct: 90  LGNSLPFLPDPSSYSHSASGVESARSPSIFSEDLGNQCDGDNSGSLLKDFLNLSGDACSD 149

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +   P   LS 
Sbjct: 150 GGFHDFGCSNDSFCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLALSNPVTRLSP 209

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V+ A  +D +SSH SP SA  HK RMRWTPELH+ FV++V KL+GPEKATPKAV+K
Sbjct: 210 SQSCVAGAMSIDVVSSHPSPGSAANHKTRMRWTPELHDSFVKSVIKLEGPEKATPKAVMK 269

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKK  +SEEKK A S+ E+D +KKG+IQ T
Sbjct: 270 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKNENSEEKKLALSNSEADEKKKGAIQLT 329

Query: 358 EALRMQMEVQKQLHEQLEV 376
           EALRMQMEVQKQLHEQLEV
Sbjct: 330 EALRMQMEVQKQLHEQLEV 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.785	0.659	0.526	1.5e-81
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.737	0.628	0.343	1.1e-30
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.435	0.397	0.456	1.4e-30
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.289	0.266	0.625	1.3e-29
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.411	0.390	0.456	5e-28
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.289	0.381	0.571	1.3e-27
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.283	0.285	0.517	7.6e-25
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.294	0.329	0.464	2.9e-23
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.294	0.310	0.473	3.8e-23
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.294	0.376	0.462	1.3e-22

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
 Identities = 159/302 (52%), Positives = 187/302 (61%)

Query:    80 SDSPISPGSHF--QHSKGGFSRSSVFCTXXXXXXXXXXETHRQIGN-FPFLPHPRTFNQS 136
             S SP SPG  +    S+  FSRSS FCT          ET + +GN  PFLP P ++  S
Sbjct:    53 SQSPDSPGQLWPKNSSQSTFSRSSTFCTNLYLSSSSTSETQKHLGNSLPFLPDPSSYTHS 112

Query:   137 VSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SDGSFPGVTCMGERLGLNE 195
              S V+S +S  +F+ED+GN     +S SL+K FLN   DA SDG F    C  +   L++
Sbjct:   113 ASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSDGDFHDFGCSNDSYCLSD 172

Query:   196 HLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDXXXXX 255
              +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS  ++ V  A  VD     
Sbjct:   173 QMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSPSQSCVPGAMSVDVVSSH 231

Query:   256 XXXXXXXXXKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQ 315
                      K RMRWTPELHE FV+AV KL+GPEKATPKAV KLMNVEGLTIYHVKSHLQ
Sbjct:   232 PSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQ 291

Query:   316 KYRLAKYMPXXXXXXXXXXXXXXXXXXX-IESDGRKKGSIQFTEALRMQMEVQKQLHEQL 374
             KYRLAKYMP                     E+D +KKG+IQ TEALRMQMEVQKQLHEQL
Sbjct:   292 KYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQL 351

Query:   375 EV 376
             EV
Sbjct:   352 EV 353

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 102/297 (34%), Positives = 140/297 (47%)

Query:    93 SKGG--FSRSSVFCTXXXXXXXXXXETHRQIGNFP----FLPHPRTFNQSVSAVDSTKSS 146
             S GG  FS SS FC           +    +   P     + H     Q       T S 
Sbjct:    58 SSGGNLFSSSSGFCNGVYVSSSS--QARPSVSTVPRDRITVAHVSGEGQRQECPVETHSL 115

Query:   147 LLFSEDMGNAYQEEHSESLMKGFLNFP-EDASDGSFPGVTCMGERLGLNEHLEL--QFLS 203
              L ++          S+ + +GF +FP  D    S   +    E L   E  +   Q +S
Sbjct:   116 QLINQPQEQKIMTWSSDQI-RGFFDFPVPDPQAASSRTMVSSKEVLSKCEWPDWADQLIS 174

Query:   204 DE-LDIDITDHGENPRLDEIY---DAPKSSLKPPMGLSCKENYVSSAPPVDXXXXXXXXX 259
             D+ L+ + ++   +P +  +Y   +   S +     +   ++ V   P ++         
Sbjct:   175 DDSLEPNWSELLGDPNVLNLYSKIETQSSDIARQEIVFRNQHQVD--PSMEPFNAKSPPA 232

Query:   260 XXXXXKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319
                  K RMRWTPELHE FVEA+N+L G E+ATPKAVLKL+N  GLT+YHVKSHLQKYR 
Sbjct:   233 SSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRT 292

Query:   320 AKYMPXXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
             A+Y P                   I+S   K  SI+ TEALR+QM+VQKQLHEQLE+
Sbjct:   293 ARYKPELSKDTEEPLVKNLKTIEDIKSLDLKT-SIEITEALRLQMKVQKQLHEQLEI 348

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/173 (45%), Positives = 97/173 (56%)

Query:   205 ELDIDITDHGENPRLDEIY-DAPKSSLKPPMGLSCKENYVSSAPPVDXXXXXXXXXXXXX 263
             EL  D + H  N  +   + D P+  +        ++  VSS    D             
Sbjct:   177 ELLGDSSSHNPNSEIPTPFLDVPRLDITANQ----QQQMVSSE---DQLSGRNSSSSVAT 229

Query:   264 XKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323
              K RMRWTPELHE FVEAVN+L G E+ATPKAVLKL+N  GLTIYHVKSHLQKYR A+Y 
Sbjct:   230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK 289

Query:   324 PXXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
             P                   I+S   K  S++ T+ALR+QMEVQK+LHEQLE+
Sbjct:   290 PETSEVTGEPQEKKMTSIEDIKSLDMKT-SVEITQALRLQMEVQKRLHEQLEI 341

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 70/112 (62%), Positives = 75/112 (66%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             K RMRWTPELHE FVEAVN L G E+ATPK VLK+M VEGLTIYHVKSHLQKYR A+Y P
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
                                   D   KG I  TEALR+QMEVQKQLHEQLE+
Sbjct:   285 EPSETGSPERKLTPLEHIT-SLD--LKGGIGITEALRLQMEVQKQLHEQLEI 333

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 74/162 (45%), Positives = 89/162 (54%)

Query:   215 ENPRLDEIYDAPKSSLKPPMGLSCKE-NYVSSAPPVDXXXXXXXXXXXXXXKPRMRWTPE 273
             + P +      P++ L+ P   SC E   +      +              K RMRWTPE
Sbjct:   182 QQPSMQSQIQQPQAVLQQPS--SCVELRPLDRTVSSNSNNNSNSNNAAAAAKGRMRWTPE 239

Query:   274 LHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPXXXXXXXXX 333
             LHE FV+AVN+L G  +ATPK VLK M VEGLTI+HVKSHLQKYR AKY+P         
Sbjct:   240 LHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYRTAKYIPVPSEGSPEA 299

Query:   334 XXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLE 375
                       I SD  K+G I  TE LR+QME QK+LHEQLE
Sbjct:   300 RLTPLEQ---ITSDDTKRG-IDITETLRIQMEHQKKLHEQLE 337

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 64/112 (57%), Positives = 77/112 (68%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             K R+RWT ELHE FV+AV +L GP++ATPK VL++M V+GLTIYHVKSHLQKYRLAKY+P
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 74

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
                                   DG     +Q TEAL++QMEVQK+LHEQLEV
Sbjct:    75 DSSSEGKKTDKKESGDMLS-GLDG--SSGMQITEALKLQMEVQKRLHEQLEV 123

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 58/112 (51%), Positives = 75/112 (66%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             K R+RWT +LHE FVE VN+L G +KATPKA+LK M+ +GLTI+HVKSHLQKYR+AKYMP
Sbjct:   192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMP 251

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
                                 + D R    +Q  EAL++Q++VQ+ LHEQLE+
Sbjct:   252 ESQEGKFEKRACAKELS---QLDTRT--GVQIKEALQLQLDVQRHLHEQLEI 298

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 59/127 (46%), Positives = 76/127 (59%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             KPR++WT +LH  F+EAVN+L GP KATPK ++K+M + GLT+YH+KSHLQKYRL K M 
Sbjct:    34 KPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLGKSMK 93

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGR---------------KKGSIQFTEALRMQMEVQKQ 369
                                 ++D R               K   +Q TEAL+MQMEVQK+
Sbjct:    94 FDDNKLEVSSASENQEVES-KNDSRDLRGCSVTEENSNPAKDRGLQITEALQMQMEVQKK 152

Query:   370 LHEQLEV 376
             LHEQ+EV
Sbjct:   153 LHEQIEV 159

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 53/112 (47%), Positives = 70/112 (62%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             KPR+RWT ELHE FV+AV +L GP+KATPK ++++M V+GLT+YH+KSHLQK+RL K  P
Sbjct:    34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEV 376
                                I+ +      +       MQMEVQ++LHEQLEV
Sbjct:    93 HKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEV 144

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/119 (46%), Positives = 73/119 (61%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM- 323
             KPR+RWT ELHE FV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQK+RL +   
Sbjct:    37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQSC 96

Query:   324 ------PXXXXXXXXXXXXXXXXXXXIESDGRKKG-SIQFTEALRMQMEVQKQLHEQLE 375
                                       +    +++  S Q TEALR QMEVQ++LHEQLE
Sbjct:    97 KESIDNSKDVSCVAESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQMEVQRRLHEQLE 155

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	4e-25
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	9e-10
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	1e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-08

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 96.3 bits (240), Expect = 4e-25
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
           KPR+ WT +LH+ F++AV KL GP+ ATPK +L+LM V+GLT   V SHLQKYRL +
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 59.8 bits (144), Expect = 9e-10
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 249 VDALSSHTSPASATAHKP-----RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVE 303
           VD   +  SP S     P     ++ WTPELH  FV AV +L G EKA P  +L+LM V+
Sbjct: 214 VDRKDNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQL-GVEKAFPSRILELMGVQ 272

Query: 304 GLTIYHVKSHLQKYR 318
            LT +++ SHLQKYR
Sbjct: 273 CLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 18/24 (75%), Positives = 22/24 (91%)

Query: 353 SIQFTEALRMQMEVQKQLHEQLEV 376
            +Q TEALR+QMEVQ++LHEQLEV
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEV 24

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318
           R  WTPE  E  +EAV K           + K +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
PLN03162	526	golden-2 like transcription factor; Provisional	99.92
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.02
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.12
smart00426	68	TEA TEA domain.	81.4

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.92  E-value=5.9e-26  Score=225.32  Aligned_cols=70  Identities=43%  Similarity=0.655  Sum_probs=63.9

Q ss_pred             CCCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhcccCCcchhhh
Q 017108          260 SATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK  330 (377)
Q Consensus       260 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~~~~~~~~  330 (377)
                      ....+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++...++..
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaE  299 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAE  299 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhh
Confidence            344889999999999999999999996 7999999999999999999999999999999998876666554

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=1.2e-21  Score=149.04  Aligned_cols=56  Identities=61%  Similarity=0.976  Sum_probs=54.3

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108          265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA  320 (377)
Q Consensus       265 KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  320 (377)
                      |+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.02  E-value=1.3e-10  Score=87.83  Aligned_cols=24  Identities=79%  Similarity=1.059  Sum_probs=22.8

Q ss_pred             CccHHHHHHHHHHHhhhhhhhhcc
Q 017108          353 SIQFTEALRMQMEVQKQLHEQLEV  376 (377)
Q Consensus       353 ~~qitEALrmQmEVQkrLhEQLEV  376 (377)
                      +++|+||||+||||||||||||||
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEv   24 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEV   24 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999997

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.12  E-value=0.001  Score=47.88  Aligned_cols=48  Identities=33%  Similarity=0.371  Sum_probs=41.2

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhh
Q 017108          267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR  318 (377)
Q Consensus       267 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR  318 (377)
                      |..||+|=+++|++||.++|. .  .-+.|-+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            578999999999999999963 2  5789999998 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=81.40  E-value=1.6  Score=35.40  Aligned_cols=17  Identities=29%  Similarity=0.790  Sum_probs=16.0

Q ss_pred             ccCHHHHHHHHHHHHhh
Q 017108          269 RWTPELHECFVEAVNKL  285 (377)
Q Consensus       269 rWT~ELH~rFV~AV~qL  285 (377)
                      .|.++|-..|++|+...
T Consensus         5 vWp~~lE~Af~~aL~~~   21 (68)
T smart00426        5 VWSPDIEQAFQEALAIY   21 (68)
T ss_pred             cCcHHHHHHHHHHHHHc
Confidence            69999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		2e-10

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320
           KPR+ WT ELH  F+ AV+ L G E+A PK +L LMNV+ LT  +V SHLQK+R+A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 99.6 bits (248), Expect = 2e-26
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
              KPR+ WT ELH  F+ AV+ L G E+A PK +L LMNV+ LT  +V SHLQK+R+A 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 39/253 (15%), Positives = 81/253 (32%), Gaps = 85/253 (33%)

Query: 132 TFNQSVS-AVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLN-----FPEDASDGSFPGVT 185
           T  + V+  + +  ++ +  +        +  +SL+  +L+      P +    + P   
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRL 330

Query: 186 CM-GERLGLNEHLELQFLSDELD-IDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYV 243
            +  E            + D L   D   H    +L  I ++  + L+P      ++ + 
Sbjct: 331 SIIAES-----------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---EYRKMF- 375

Query: 244 SSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLM--N 301
                 D LS                        F  + +         P  +L L+  +
Sbjct: 376 ------DRLS-----------------------VFPPSAH--------IPTILLSLIWFD 398

Query: 302 VEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGSIQFTEALR 361
           V    +  V + L KY L +              + K++T SI        SI     L+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVE-------------KQPKESTISIP-------SIYL--ELK 436

Query: 362 MQMEVQKQLHEQL 374
           +++E +  LH  +
Sbjct: 437 VKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	89.47
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	87.77
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	82.33

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=3.9e-29  Score=193.74  Aligned_cols=61  Identities=51%  Similarity=0.758  Sum_probs=57.8

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017108          262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM  323 (377)
Q Consensus       262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~  323 (377)
                      +.+|+||+||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            5789999999999999999999996 799999999999999999999999999999997554

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=89.47  E-value=0.94  Score=35.53  Aligned_cols=48  Identities=15%  Similarity=0.133  Sum_probs=39.3

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 017108          264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY  317 (377)
Q Consensus       264 ~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  317 (377)
                      ...+-.||+|=+++|++||.++|+    .=+.|-+.|+  +=|..+++.|-++|
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            344678999999999999999973    2367777765  78999999999887

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.77  E-value=1.4  Score=33.27  Aligned_cols=51  Identities=25%  Similarity=0.331  Sum_probs=40.5

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108          264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA  320 (377)
Q Consensus       264 ~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  320 (377)
                      ...+-.||+|=++.|++||.++|-    .=+.|-+.|  +|=|-.+||.|-++|-..
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            445668999999999999999963    235666654  789999999999988554

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.33  E-value=2.1  Score=32.35  Aligned_cols=53  Identities=23%  Similarity=0.307  Sum_probs=39.5

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCch---HHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108          265 KPRMRWTPELHECFVEAVNKLDGPEKATP---KAVLKLMNVEGLTIYHVKSHLQKYRLA  320 (377)
Q Consensus       265 KpRlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~  320 (377)
                      ..+-.||+|=+++|++||.++| .+...|   +.|-+.|  +|=|..+|+.|-|+|-..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            3445799999999999999996 332223   3444454  689999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	377
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	8e-25

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 93.8 bits (233), Expect = 8e-25
 Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
           KPR+ WT ELH  F+ AV+ L G E+A PK +L LMNV+ LT  +V SHLQK+R+A 
Sbjct: 5   KPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	88.18

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.2e-26  Score=177.74  Aligned_cols=61  Identities=51%  Similarity=0.750  Sum_probs=57.2

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017108          262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM  323 (377)
Q Consensus       262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~  323 (377)
                      +.+|+|++||+|||++||+||++||| ++|+||.|+++|+|+|||+.||+|||||||+...+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999965 89999999999999999999999999999997653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.18  E-value=0.41  Score=33.61  Aligned_cols=48  Identities=27%  Similarity=0.390  Sum_probs=39.0

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108          267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA  320 (377)
Q Consensus       267 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  320 (377)
                      .++||+|=++.|++||.++|.    .=..|-+.|+  |=|..+|++|-++|...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence            468999999999999999973    2356666664  78999999999987553