Citrus Sinensis ID: 017109
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | 2.2.26 [Sep-21-2011] | |||||||
| Q6AZT7 | 1300 | Nephrocystin-3 OS=Xenopus | N/A | no | 0.485 | 0.140 | 0.308 | 1e-14 | |
| Q5R8E2 | 504 | Kinesin light chain 3 OS= | yes | no | 0.496 | 0.371 | 0.299 | 1e-14 | |
| Q6P597 | 504 | Kinesin light chain 3 OS= | yes | no | 0.604 | 0.452 | 0.279 | 1e-14 | |
| A0JM23 | 1311 | Nephrocystin-3 OS=Xenopus | yes | no | 0.498 | 0.143 | 0.290 | 6e-14 | |
| Q2TBQ9 | 505 | Kinesin light chain 3 OS= | yes | no | 0.607 | 0.453 | 0.270 | 8e-14 | |
| Q68G30 | 505 | Kinesin light chain 3 OS= | yes | no | 0.490 | 0.366 | 0.295 | 8e-14 | |
| Q91W40 | 508 | Kinesin light chain 3 OS= | yes | no | 0.490 | 0.364 | 0.295 | 1e-13 | |
| Q9NSK0 | 619 | Kinesin light chain 4 OS= | no | no | 0.503 | 0.306 | 0.295 | 1e-13 | |
| Q5PQM2 | 619 | Kinesin light chain 4 OS= | yes | no | 0.503 | 0.306 | 0.290 | 1e-12 | |
| P46824 | 508 | Kinesin light chain OS=Dr | yes | no | 0.469 | 0.348 | 0.290 | 2e-12 |
| >sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK 183
R + G Y+LQ L AE +L+ + G P A + NNLA LY KK +DK
Sbjct: 1067 RTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGADHPDCAQSINNLAALYNEKKQYDK 1126
Query: 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243
AE LY A+ I + + P+ + +L Y + KL+ A YE A+ I+ + G
Sbjct: 1127 AEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGP 1186
Query: 244 GNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEEN------GEGDSMTCIRRLRY 296
+ A + +LA VLY Q K++D+ L+ +++I E++ G+++ + LRY
Sbjct: 1187 KHPSVATALVNLA-VLYCQMKKQDDALPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRY 1245
Query: 297 LAQTYVKANRL 307
Y KA L
Sbjct: 1246 EEGDYEKAAEL 1256
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Xenopus laevis (taxid: 8355) |
| >sp|Q5R8E2|KLC3_PONAB Kinesin light chain 3 OS=Pongo abelii GN=KLC3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 217 YAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDAL 276
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I +++ GPE + +NL Y + + +A +RAL+I+ +VLG + D A +
Sbjct: 277 QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQL 336
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK D E + ++ I E G + LA Y+K N+ AE
Sbjct: 337 NNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEE 396
Query: 313 VQRKILH 319
+ ++ILH
Sbjct: 397 LYKEILH 403
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Pongo abelii (taxid: 9601) |
| >sp|Q6P597|KLC3_HUMAN Kinesin light chain 3 OS=Homo sapiens GN=KLC3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 1/229 (0%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 217 YAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDAL 276
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I +++ GPE + +NL Y + + +A +RAL+I+ +VLG + D A +
Sbjct: 277 QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQL 336
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK D E + ++ I E G + LA Y+K N+ AE
Sbjct: 337 NNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEE 396
Query: 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+ ++ILH + + +T A + L+ + SL + +E R E
Sbjct: 397 LYKEILHKEDLPAPLGAPNTGTAGDA-EQALRRSSSLSKIRESIRRGSE 444
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Homo sapiens (taxid: 9606) |
| >sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK 183
R + G Y+LQ L AE +L+ + G P A + NNLA LY KK +DK
Sbjct: 1078 RTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGADHPDCAQSINNLAALYNEKKQYDK 1137
Query: 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243
AE LY A+ I + + P+ + +L Y + KL+ A YE A++I+ + G
Sbjct: 1138 AEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGP 1197
Query: 244 GNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEEN------GEGDSMTCIRRLRY 296
+ A + +LA VLY Q K+ ++ L+ +++I E++ G+++ + LRY
Sbjct: 1198 KHPSVATALVNLA-VLYCQMKKQAEASPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRY 1256
Query: 297 -------LAQTYVKANRLTDAET 312
A+ Y +A + + ET
Sbjct: 1257 EEGDFEKAAELYKRAMEIKETET 1279
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Xenopus tropicalis (taxid: 8364) |
| >sp|Q2TBQ9|KLC3_BOVIN Kinesin light chain 3 OS=Bos taurus GN=KLC3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 107/229 (46%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 217 YAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDAL 276
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I +++ GPE + +NL Y + + +A +RAL+I+ +VLG + D A +
Sbjct: 277 QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQL 336
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK + E + ++ I E G + LA Y+K N+ AE
Sbjct: 337 NNLALLCQNQGKFEEVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEE 396
Query: 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+ ++ILH + +T ++ TL + S + +E R E
Sbjct: 397 LYKEILHREALPAPLGAPNTGTTSDTQQQTLSRSSSFSKLRESIRRGSE 445
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Bos taurus (taxid: 9913) |
| >sp|Q68G30|KLC3_RAT Kinesin light chain 3 OS=Rattus norvegicus GN=Klc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 217 YASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDAL 276
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I +++ GPE + +NL Y + + +A +RAL+I+ +VLG + D A +
Sbjct: 277 QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQL 336
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK D E + ++ I E G + LA Y+K N+ AE
Sbjct: 337 NNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEE 396
Query: 313 VQRKIL 318
+ ++IL
Sbjct: 397 LYKEIL 402
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Rattus norvegicus (taxid: 10116) |
| >sp|Q91W40|KLC3_MOUSE Kinesin light chain 3 OS=Mus musculus GN=Klc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 217 YAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDAL 276
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I +++ GPE + +NL Y + + +A +RAL+I+ +VLG + D A +
Sbjct: 277 QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQL 336
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK D E + ++ I E G + LA Y+K N+ AE
Sbjct: 337 NNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEE 396
Query: 313 VQRKIL 318
+ ++IL
Sbjct: 397 LYKEIL 402
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Mus musculus (taxid: 10090) |
| >sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 221 YAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 280
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
I + + GP+ + +NL Y + K ++A +RAL+I+ +VLG + D A +
Sbjct: 281 SIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQL 340
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK E + ++ I E D+ R LA Y+K + +AET
Sbjct: 341 NNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAET 400
Query: 313 VQRKIL---HIME 322
+ ++IL H+ E
Sbjct: 401 LYKEILTRAHVQE 413
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 221 YAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 280
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
I + + G + + +NL Y + K ++A +RAL+I+ +VLG + D A +
Sbjct: 281 SIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQL 340
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK E + ++ I E D+ R LA Y+K + ++AET
Sbjct: 341 NNLALLCQNQGKYEAVERYYQRALAIYERQLGPDNPNVARTKNNLASCYLKQGKYSEAET 400
Query: 313 VQRKIL---HIME 322
+ ++IL H+ E
Sbjct: 401 LYKEILTRAHVQE 413
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ + G P VA+ N LA +YR + + +A L +A+
Sbjct: 196 YASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNKYKEAANLLNDAL 255
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
I ++ G + +NL Y + K +DA +RAL+I+ +VLG + D A +
Sbjct: 256 SIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREKVLGKDHPDVAKQL 315
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK ++ E + ++ I E D + LA Y+K R T+AE
Sbjct: 316 NNLALLCQNQGKYDEVEKYYQRALDIYESKLGPDDPNVAKTKNNLAGCYLKQGRYTEAEI 375
Query: 313 VQRKIL 318
+ +++L
Sbjct: 376 LYKQVL 381
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| 296087099 | 612 | unnamed protein product [Vitis vinifera] | 0.885 | 0.545 | 0.693 | 1e-134 | |
| 225451383 | 522 | PREDICTED: nephrocystin-3-like [Vitis vi | 0.883 | 0.637 | 0.692 | 1e-134 | |
| 118486810 | 553 | unknown [Populus trichocarpa] | 0.976 | 0.665 | 0.637 | 1e-134 | |
| 356569627 | 530 | PREDICTED: kinesin light chain 3-like [G | 0.973 | 0.692 | 0.622 | 1e-129 | |
| 356537896 | 522 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.693 | 0.627 | 1e-128 | |
| 255583555 | 503 | kinesin light chain, putative [Ricinus c | 0.827 | 0.620 | 0.697 | 1e-128 | |
| 224077344 | 445 | predicted protein [Populus trichocarpa] | 0.968 | 0.820 | 0.596 | 1e-126 | |
| 449446123 | 549 | PREDICTED: uncharacterized protein LOC10 | 0.957 | 0.657 | 0.612 | 1e-125 | |
| 357460835 | 536 | Kinesin light chain [Medicago truncatula | 0.962 | 0.677 | 0.597 | 1e-122 | |
| 334188054 | 551 | tetratricopeptide repeat domain-containi | 0.875 | 0.598 | 0.636 | 1e-119 |
| >gi|296087099|emb|CBI33473.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/336 (69%), Positives = 270/336 (80%), Gaps = 2/336 (0%)
Query: 39 KMKFSHQYGSAAGGYAWRTNQNDSRLWILLFAPASLIYGITPNPVLAEDISIESTSQNDT 98
KM+ +QYGS GY WR + D LWI + A+L+ G+ PVLAED+SIE +S+ND
Sbjct: 40 KMEHLNQYGSE--GYTWRGHHKDIWLWIFISGHAALVLGLNGQPVLAEDVSIELSSENDI 97
Query: 99 EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG 158
G NA GLR+IEDGSV+SN+HTSKWR+FTD GR+ FLQGKL EAE FLSALQEAKEGFG
Sbjct: 98 GGANATGLRRIEDGSVISNMHTSKWRIFTDQGRELFLQGKLEEAENFFLSALQEAKEGFG 157
Query: 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218
+DPHVAS+CNNLAELYRVKK FDKAEPLYLEAI ILQESFGPEDIR+G HNLGQFY+
Sbjct: 158 AKDPHVASSCNNLAELYRVKKLFDKAEPLYLEAINILQESFGPEDIRVGATLHNLGQFYV 217
Query: 219 VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+++KLEDA YERALKIK RVLG G+ DYADTMYHL VLYLQGK DSEAL +S+RI
Sbjct: 218 MRKKLEDARICYERALKIKRRVLGDGHTDYADTMYHLGMVLYLQGKIKDSEALIQDSVRI 277
Query: 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338
LE+ G G+S IRRLRYLAQ Y+K+N+ +AE RKILH+ME SKGWNSLDTVIAAE
Sbjct: 278 LEDGGLGESTIYIRRLRYLAQIYLKSNQPAEAENAHRKILHVMEFSKGWNSLDTVIAAED 337
Query: 339 LALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374
LALTLQS G L EAQEL +RCL+ RK L+P+DHIQ+
Sbjct: 338 LALTLQSVGRLREAQELLQRCLDVRKSLLPEDHIQI 373
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451383|ref|XP_002264885.1| PREDICTED: nephrocystin-3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/335 (69%), Positives = 269/335 (80%), Gaps = 2/335 (0%)
Query: 40 MKFSHQYGSAAGGYAWRTNQNDSRLWILLFAPASLIYGITPNPVLAEDISIESTSQNDTE 99
M+ +QYGS GY WR + D LWI + A+L+ G+ PVLAED+SIE +S+ND
Sbjct: 1 MEHLNQYGSE--GYTWRGHHKDIWLWIFISGHAALVLGLNGQPVLAEDVSIELSSENDIG 58
Query: 100 GENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE 159
G NA GLR+IEDGSV+SN+HTSKWR+FTD GR+ FLQGKL EAE FLSALQEAKEGFG
Sbjct: 59 GANATGLRRIEDGSVISNMHTSKWRIFTDQGRELFLQGKLEEAENFFLSALQEAKEGFGA 118
Query: 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV 219
+DPHVAS+CNNLAELYRVKK FDKAEPLYLEAI ILQESFGPEDIR+G HNLGQFY++
Sbjct: 119 KDPHVASSCNNLAELYRVKKLFDKAEPLYLEAINILQESFGPEDIRVGATLHNLGQFYVM 178
Query: 220 QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279
++KLEDA YERALKIK RVLG G+ DYADTMYHL VLYLQGK DSEAL +S+RIL
Sbjct: 179 RKKLEDARICYERALKIKRRVLGDGHTDYADTMYHLGMVLYLQGKIKDSEALIQDSVRIL 238
Query: 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339
E+ G G+S IRRLRYLAQ Y+K+N+ +AE RKILH+ME SKGWNSLDTVIAAE L
Sbjct: 239 EDGGLGESTIYIRRLRYLAQIYLKSNQPAEAENAHRKILHVMEFSKGWNSLDTVIAAEDL 298
Query: 340 ALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374
ALTLQS G L EAQEL +RCL+ RK L+P+DHIQ+
Sbjct: 299 ALTLQSVGRLREAQELLQRCLDVRKSLLPEDHIQI 333
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486810|gb|ABK95240.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/378 (63%), Positives = 294/378 (77%), Gaps = 10/378 (2%)
Query: 1 MYLRQQAIANLLTRFRHVRSRIFSSSG----ANSLPLLQVSCKMKFSHQYGSAAGGYAWR 56
M++RQ +A R H + FSSS +N+LP +S K K S++YG GG +WR
Sbjct: 1 MHMRQ--LAAKFLRRTHFPPQRFSSSSEITTSNALPN-SLSSKTKCSYKYG--FGGPSWR 55
Query: 57 TNQNDSRLWILLFAPASLIYGITPNPVLAEDISIESTSQNDTEGENAFGLRKIEDGSVVS 116
N D LW +L A++I GI NPVLA++ ES+SQND + ++ FG RKIEDGSV+S
Sbjct: 56 MNSRDCYLWTILAGQAAIILGINANPVLADEPR-ESSSQNDLDTDSMFGFRKIEDGSVIS 114
Query: 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYR 176
N HT+KWR+F+D GR+ FLQGKL +AEK F SALQEAKEGFGE+DPHVAS+CNNLAEL+R
Sbjct: 115 NEHTAKWRLFSDKGREVFLQGKLDQAEKFFFSALQEAKEGFGEKDPHVASSCNNLAELFR 174
Query: 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
V+K FDKAEPLY EAIKIL+ESFGPEDIR+G A HNLGQFYL+QRKL++A YERA+KI
Sbjct: 175 VQKQFDKAEPLYWEAIKILEESFGPEDIRVGAALHNLGQFYLMQRKLDEADKCYERAVKI 234
Query: 237 KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296
K RVLG + DYADT+YHL VLYL GKE D+EAL ESI+ILEENG GDS+TCIRRL++
Sbjct: 235 KRRVLGLNHTDYADTLYHLGMVLYLLGKEKDAEALIQESIKILEENGMGDSITCIRRLQF 294
Query: 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356
L+Q Y+K+NRL +AE VQRK+L IME SKGWNS+DTVI AE LAL LQS + EA+EL
Sbjct: 295 LSQMYLKSNRLAEAEDVQRKVLQIMELSKGWNSMDTVIVAERLALILQSIEKIKEAKELL 354
Query: 357 ERCLEARKKLMPQDHIQV 374
ERCLEARK L+P+DHIQ+
Sbjct: 355 ERCLEARKSLLPEDHIQI 372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569627|ref|XP_003553000.1| PREDICTED: kinesin light chain 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/374 (62%), Positives = 284/374 (75%), Gaps = 7/374 (1%)
Query: 1 MYLRQQAIANLLTRFRHVRSRIFSSSGANSLPLLQVSCKMKFSHQYGSAAGGYAWRTNQN 60
M LR A+ NLL + R S +F +S + S K+K S Y AG + WR +
Sbjct: 1 MSLRVAAV-NLLKKLRFPASHVFPASTVTTNAF---SGKLKLSRWY--QAGEHGWRIDLR 54
Query: 61 DSRLWILLFAPASLIYGITPNPVLAEDISIESTSQNDTEGENAFGLRKIEDGSVVSNIHT 120
D LWI++ ++ GI+ + V AED + E+ ND G + GLRKIEDGSVVSNIHT
Sbjct: 55 DPCLWIVISGHVAMTLGISASTVFAEDATTEAYPDNDPGG-DLIGLRKIEDGSVVSNIHT 113
Query: 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA 180
+KWRVFTD R++FLQGKL EAEKLFLSA++EAKEGFGE+DPHVASACNNLAELYRVKKA
Sbjct: 114 AKWRVFTDKAREFFLQGKLDEAEKLFLSAIEEAKEGFGEKDPHVASACNNLAELYRVKKA 173
Query: 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240
FDKAEPLYLEAI IL+ESFGP+D+R+GVA HNLGQFYL QRKLE+A YERALKIK RV
Sbjct: 174 FDKAEPLYLEAINILEESFGPDDVRVGVAVHNLGQFYLGQRKLEEARVSYERALKIKRRV 233
Query: 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT 300
LG+G+ + +DTMYHL VLYLQGKE D+EA +SIR+LEE GEG+S CIRRLRYL+Q
Sbjct: 234 LGYGHSECSDTMYHLGVVLYLQGKERDAEAFIKDSIRMLEEGGEGESFICIRRLRYLSQI 293
Query: 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360
Y+ + + +AE VQRKILH++E SKGWNSLDTVIAAE LALTLQ++G+ +++E ERCL
Sbjct: 294 YMNSQQFAEAELVQRKILHVVELSKGWNSLDTVIAAESLALTLQASGNTKDSKEFLERCL 353
Query: 361 EARKKLMPQDHIQV 374
RK L+P DHIQ+
Sbjct: 354 NVRKDLLPGDHIQI 367
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537896|ref|XP_003537442.1| PREDICTED: uncharacterized protein LOC100817145 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/368 (62%), Positives = 283/368 (76%), Gaps = 6/368 (1%)
Query: 7 AIANLLTRFRHVRSRIFSSSGANSLPLLQVSCKMKFSHQYGSAAGGYAWRTNQNDSRLWI 66
A A+LL + R S F++S A + S K+K Y + G + R + D LWI
Sbjct: 6 AAASLLKKLRFPASHFFAASTATTNAF---SGKLKLFRWYQT--GAHGCRIDLRDPCLWI 60
Query: 67 LLFAPASLIYGITPNPVLAEDISIESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVF 126
++ ++ GI+ + V AED + E++S ND G + GLRKIED SVVSNIHT+KWRVF
Sbjct: 61 VMSGHVAMTLGISASTVFAEDATTEASSDNDPGG-DLIGLRKIEDDSVVSNIHTAKWRVF 119
Query: 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEP 186
TD R +FLQGKL EAEKLFLSA++EAKEGFGE+DPHVASACNNLAELYRVKKAFDKAEP
Sbjct: 120 TDKARQFFLQGKLDEAEKLFLSAIEEAKEGFGEKDPHVASACNNLAELYRVKKAFDKAEP 179
Query: 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246
LYLEAI IL+ESFGP+D+R+GVA HNLGQFYL QRKLE+A YERALKIK RVLG+G+
Sbjct: 180 LYLEAINILEESFGPDDVRVGVAVHNLGQFYLGQRKLEEARVSYERALKIKRRVLGYGHS 239
Query: 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306
+ +DTMYHL VLYLQGKE D+EAL +SIR+LEE GEG+S CIRRLRYL+Q Y+K++R
Sbjct: 240 ECSDTMYHLGVVLYLQGKERDAEALIKDSIRMLEEGGEGESFVCIRRLRYLSQIYMKSHR 299
Query: 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366
+ +AE VQRKILH+ME SKGW LDTVIAAE LALTLQ++G+ +++EL ERCL RK L
Sbjct: 300 IAEAEMVQRKILHVMELSKGWYFLDTVIAAESLALTLQASGNTKDSKELLERCLNVRKDL 359
Query: 367 MPQDHIQV 374
+P DHIQ+
Sbjct: 360 LPSDHIQI 367
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583555|ref|XP_002532534.1| kinesin light chain, putative [Ricinus communis] gi|223527746|gb|EEF29850.1| kinesin light chain, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/317 (69%), Positives = 261/317 (82%), Gaps = 5/317 (1%)
Query: 58 NQNDSRLWILLFAPASLIYGITPNPVLAEDISIESTSQNDTEGENAFGLRKIEDGSVVSN 117
N D +W ++ A++I GI NPVLA + ES S+ ++EG N GLRKIEDGSV+SN
Sbjct: 2 NYKDGYIWSIIAGQAAIILGINANPVLA-NAPNESNSETESEGANVIGLRKIEDGSVISN 60
Query: 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV 177
IHTSKWR+FTD+GR YFLQGKL EAEK FLSAL+EAK+GFG R+PHVASACNNLAELYRV
Sbjct: 61 IHTSKWRIFTDNGRAYFLQGKLDEAEKFFLSALEEAKKGFGNREPHVASACNNLAELYRV 120
Query: 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
KKAFDKAEPLYLEA+ IL+ESFGP+DIR+G AFHNLGQFYL+QRKLE+A YE IK
Sbjct: 121 KKAFDKAEPLYLEAVNILEESFGPDDIRVGAAFHNLGQFYLMQRKLEEARNCYE----IK 176
Query: 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297
VLGH + DYADTMYHL TVLYLQGKE D+E L +SI+ILE G+G+S+ CIRRLRYL
Sbjct: 177 RHVLGHDHTDYADTMYHLGTVLYLQGKEKDAEDLIQDSIQILEGAGQGESIMCIRRLRYL 236
Query: 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357
+Q Y+K+NR+ +AE VQRK+LHIME KGWNS+DTVI AE LALTLQ+ GSL EA+EL E
Sbjct: 237 SQIYLKSNRVAEAENVQRKVLHIMELLKGWNSMDTVITAESLALTLQAAGSLKEARELLE 296
Query: 358 RCLEARKKLMPQDHIQV 374
RCL+ARK L+PQDHIQ+
Sbjct: 297 RCLDARKTLLPQDHIQI 313
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077344|ref|XP_002305220.1| predicted protein [Populus trichocarpa] gi|222848184|gb|EEE85731.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/399 (59%), Positives = 291/399 (72%), Gaps = 34/399 (8%)
Query: 1 MYLRQQAIANLLTRFRHVRSRIFSSSG----ANSLPLLQVSCKMKFSHQYGSAAGGYAWR 56
M++RQ +A R H + FSSS +N+LP +S K K S++YG GG +WR
Sbjct: 1 MHMRQ--LAAKFLRRTHFPPQRFSSSSEITTSNALPN-SLSSKTKCSYKYG--FGGPSWR 55
Query: 57 TNQNDSRLWILLFAPASLIYGITPNPVLAEDISIESTSQNDTEGENAFGLRKIEDGSVVS 116
N D LW +L A++I GI NPVLA++ ES+SQND + ++ FG RKIEDGSV+S
Sbjct: 56 MNSRDCYLWTILAGQAAIILGINANPVLADEPR-ESSSQNDLDTDSMFGFRKIEDGSVIS 114
Query: 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYR 176
N HT+KWR+F+D GR +GKL +AEK F SALQEAKEGFGE+DPHVAS+CNNLAEL+R
Sbjct: 115 NEHTAKWRLFSDKGR----EGKLDQAEKFFFSALQEAKEGFGEKDPHVASSCNNLAELFR 170
Query: 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
V+K FDKAEPLY EAIKIL+ESFGPEDIR+G A HNLGQFYL+QRKL++A YERA+KI
Sbjct: 171 VQKQFDKAEPLYWEAIKILEESFGPEDIRVGAALHNLGQFYLMQRKLDEADKCYERAVKI 230
Query: 237 KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296
K RVLG + DYADT+YHL VLYL GKE D+EAL ESI+ILEENG GDS+TCIRRL++
Sbjct: 231 KRRVLGLNHTDYADTLYHLGMVLYLLGKEKDAEALIQESIKILEENGMGDSITCIRRLQF 290
Query: 297 LAQTYVKANRLTDAETVQRKILHIMESS--------------------KGWNSLDTVIAA 336
L+Q Y+K+NRL +AE VQRK+L IME S KGWNS+DTVI A
Sbjct: 291 LSQMYLKSNRLAEAEDVQRKVLQIMELSKATPVSKHHQEAKKIILLDQKGWNSMDTVIVA 350
Query: 337 EGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQVC 375
E LAL LQS + EA+EL ERCLEARK L+P+DHIQ+
Sbjct: 351 ERLALILQSIEKIKEAKELLERCLEARKSLLPEDHIQIA 389
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446123|ref|XP_004140821.1| PREDICTED: uncharacterized protein LOC101207905 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/382 (61%), Positives = 283/382 (74%), Gaps = 21/382 (5%)
Query: 1 MYLRQQAIANLLTRFRHVRSRIFSSSGANSLPLLQVSCKMKFSHQYGSAAGGYAWRTNQN 60
MY RQ A + L R + +SGA + P + + FS + G + R N N
Sbjct: 1 MYTRQAA-SKWLKRLSFRSTAFHHTSGAPNFPNVSI-----FSSR---CNGKSSSRKNSN 51
Query: 61 ---DSRL----WILLFAPAS-LIYGITPNPVLAEDISIESTSQNDTEGENAFGLRKIEDG 112
D L W+LL PAS +I GI NPVLAE+ S + +S+N E GLRK+EDG
Sbjct: 52 GYHDGYLNDFPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDG 111
Query: 113 SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172
SVVSN+HTSKWRVFTD+ RD FLQG+L +AEK F+SA+QEAKEGFGERDPHVASA NNLA
Sbjct: 112 SVVSNLHTSKWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLA 171
Query: 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232
ELYRV K FDKAEP+YLEAIKIL+ES+G EDIR+G A HNLGQ YLVQRKL+++C YE
Sbjct: 172 ELYRVMKTFDKAEPMYLEAIKILEESYGTEDIRVGSALHNLGQCYLVQRKLKESCNCYE- 230
Query: 233 ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292
IKGRVLG+G++DYADTMYHL TVLYL G+E DSEAL +SIRILEE G G+S+ CIR
Sbjct: 231 ---IKGRVLGYGHVDYADTMYHLGTVLYLLGEEKDSEALIQDSIRILEEGGLGESILCIR 287
Query: 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA 352
RLRYLA+ ++K+N L + E VQRKILHIME SKGWNSL+T+ +A+GLA TL + G L EA
Sbjct: 288 RLRYLAKMHMKSNNLLETENVQRKILHIMELSKGWNSLETINSADGLASTLYANGCLKEA 347
Query: 353 QELFERCLEARKKLMPQDHIQV 374
QEL ERCL+ARK L+P+DHIQ+
Sbjct: 348 QELLERCLDARKSLLPKDHIQI 369
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357460835|ref|XP_003600699.1| Kinesin light chain [Medicago truncatula] gi|217075771|gb|ACJ86245.1| unknown [Medicago truncatula] gi|355489747|gb|AES70950.1| Kinesin light chain [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/370 (59%), Positives = 279/370 (75%), Gaps = 7/370 (1%)
Query: 7 AIANLLTRFRHVRSRIFSSS--GANSLPLLQVSCKMKFSHQYGSAAGGYAWRTNQNDSRL 64
A++NLL + R S SS+ NS P+ S K +F Y + G Y WR N D L
Sbjct: 7 AVSNLLKKLRFPSSIAISSAIVTENSSPI-SFSGK-RFCQWYQT--GQYGWRQNLRDPCL 62
Query: 65 WILLFAPASLIYGITPNPVLAEDISIESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWR 124
WIL+ L GI+ N AED++ E++S N + ++ GLRKIEDGSV SNIHT+KWR
Sbjct: 63 WILISGHVVLTMGISANTAFAEDVTTETSSGN-SANDDLNGLRKIEDGSVASNIHTAKWR 121
Query: 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKA 184
VFTD R+ F +GKL +AE+LF++A++EAKEGFGE+DPHVAS+CNNLAELYRVKKAFDKA
Sbjct: 122 VFTDKARELFFEGKLDDAERLFVAAIKEAKEGFGEQDPHVASSCNNLAELYRVKKAFDKA 181
Query: 185 EPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244
EPLYLEAIKIL+ESFGP+D+R+ VA HNLGQFY+ QR LE A YERALKIK RVLG+
Sbjct: 182 EPLYLEAIKILEESFGPDDVRVAVAVHNLGQFYIGQRMLEKALVSYERALKIKRRVLGYN 241
Query: 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304
+ + +DTMY + VLYLQGKE D+E + +SI +LE++GEG+S+ CIRRLR L+Q Y+K+
Sbjct: 242 HSECSDTMYQIGMVLYLQGKEKDAEIIIKDSISMLEKSGEGESIVCIRRLRSLSQIYLKS 301
Query: 305 NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364
+RL DAE VQRKIL+IME SKGW SLDTVIAAE LALTLQ++ +++EL ERCLE R+
Sbjct: 302 HRLDDAEMVQRKILNIMEFSKGWKSLDTVIAAESLALTLQASSETKQSKELLERCLEVRR 361
Query: 365 KLMPQDHIQV 374
L+P DHIQ+
Sbjct: 362 ALLPGDHIQI 371
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334188054|ref|NP_198575.6| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|332006825|gb|AED94208.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/341 (63%), Positives = 269/341 (78%), Gaps = 11/341 (3%)
Query: 36 VSCKMKFSHQYGSAAGGYAWRTNQN--DSRLWILLFAPASLIYGITPNPVLAEDISIEST 93
+S K + S+Q + GG+ RTN + DSRLWI+L A+ I G N VLAED S++S
Sbjct: 36 LSGKPRISYQ--NDYGGH--RTNLHLLDSRLWIILSGQAA-ILGFCGNTVLAEDESMKSK 90
Query: 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEA 153
S ++ + GL KIEDGSVVSNIHTSKWRVFTDSGRDYF QGKL AE+LF SA+QEA
Sbjct: 91 SGDNMDESGNTGLEKIEDGSVVSNIHTSKWRVFTDSGRDYFFQGKLEPAERLFGSAIQEA 150
Query: 154 KEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213
KEGFGE+DPHVASACNNLAELYRVKK FDKAEPLYLEA+ IL+E +GP+D+R+G HNL
Sbjct: 151 KEGFGEKDPHVASACNNLAELYRVKKEFDKAEPLYLEAVSILEEFYGPDDVRVGATLHNL 210
Query: 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFL 273
GQ YLVQRKLE+A YE +KGRVLG+ + DYA+TMYHL TVL++ GK D+EAL L
Sbjct: 211 GQLYLVQRKLEEARACYE----LKGRVLGYNHPDYAETMYHLGTVLHMLGKNTDAEALIL 266
Query: 274 ESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333
+S++ILEE G+G+SM IRRLRYL+Q Y+++NRL +AE +QRK+LH+ME SKGWNS++ +
Sbjct: 267 DSLKILEEGGQGESMAYIRRLRYLSQIYIRSNRLAEAEKLQRKLLHMMELSKGWNSMEAI 326
Query: 334 IAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374
AAE LALTL+ +G L EA ELFE+CL ARKKL+P+ HIQ+
Sbjct: 327 TAAEALALTLRLSGKLGEALELFEKCLNARKKLLPEGHIQI 367
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| ASPGD|ASPL0000018313 | 1288 | AN3547 [Emericella nidulans (t | 0.679 | 0.198 | 0.279 | 8.9e-23 | |
| UNIPROTKB|Q5LU72 | 374 | SPO1186 "TPR domain protein" [ | 0.639 | 0.644 | 0.303 | 7.1e-22 | |
| TIGR_CMR|SPO_1186 | 374 | SPO_1186 "TPR domain protein" | 0.639 | 0.644 | 0.303 | 7.1e-22 | |
| ASPGD|ASPL0000042280 | 1128 | AN1580 [Emericella nidulans (t | 0.755 | 0.252 | 0.257 | 5e-16 | |
| ASPGD|ASPL0000061567 | 1185 | AN1071 [Emericella nidulans (t | 0.795 | 0.253 | 0.249 | 5.3e-16 | |
| ASPGD|ASPL0000010369 | 1488 | tprA [Emericella nidulans (tax | 0.684 | 0.173 | 0.255 | 1.2e-15 | |
| UNIPROTKB|Q6P597 | 504 | KLC3 "Kinesin light chain 3" [ | 0.705 | 0.527 | 0.259 | 1.3e-15 | |
| UNIPROTKB|F1MM11 | 505 | KLC3 "Kinesin light chain 3" [ | 0.708 | 0.528 | 0.251 | 3.9e-15 | |
| ASPGD|ASPL0000027031 | 1136 | AN8545 [Emericella nidulans (t | 0.618 | 0.205 | 0.304 | 4.2e-15 | |
| UNIPROTKB|Q2TBQ9 | 505 | KLC3 "Kinesin light chain 3" [ | 0.708 | 0.528 | 0.251 | 5.1e-15 |
| ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 8.9e-23, P = 8.9e-23
Identities = 72/258 (27%), Positives = 124/258 (48%)
Query: 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK 178
HTS + G Y QGKL EAEK++ AL ++ G NNL LY +
Sbjct: 1001 HTSTLMTVNNLGSLYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLITVNNLGNLYSDQ 1060
Query: 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238
+AE +Y +A+ +++ GP+ V +NLG Y Q KL++A Y++AL
Sbjct: 1061 GKLKEAEKMYQQALAGYEKALGPDHTSTLVTVNNLGNLYSDQGKLKEAEKMYQQALAGYE 1120
Query: 239 RVLGHGNIDYADTMYHLATVLYL-QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297
+ +G + DT+ +L +LY QGK ++E ++ +++ E+ D + + + L
Sbjct: 1121 KAVGPDHTSTLDTVNNLG-ILYSDQGKLKEAEKMYQQALAGYEKALSPDHTSTLMTVNNL 1179
Query: 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357
Y +L +AE + ++ L E + G + T++ L + G L EA+E+F+
Sbjct: 1180 GSLYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLMTVNNLGILYSDQGKLKEAEEMFQ 1239
Query: 358 RCLEARKKLMPQDHIQVC 375
R L K + +H + C
Sbjct: 1240 RALAGYGKALGPNHSKTC 1257
|
|
| UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.1e-22, P = 7.1e-22
Identities = 74/244 (30%), Positives = 120/244 (49%)
Query: 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLY 188
+GR Y + + EAE ++ L E G P A+ NNLAE+ R +D+AE LY
Sbjct: 72 AGR-YLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAESLY 130
Query: 189 LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248
+A++I +E+ G E G+ NL + + E A Y A+ I G+V+G + Y
Sbjct: 131 RQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHYRY 190
Query: 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRL 307
A +LA +L + ++EAL +++ I + GE S+ R L LA+ R
Sbjct: 191 ATAQNNLAGLLQDMLRFEEAEALCRQALEITSKTLGESHSVYATR-LNNLAELLGTTERY 249
Query: 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367
+AE + R+ L I + + G D I LA+ L++TG EA+ L+ + LE + +
Sbjct: 250 GEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITHRTL 309
Query: 368 PQDH 371
+ H
Sbjct: 310 GEAH 313
|
|
| TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.1e-22, P = 7.1e-22
Identities = 74/244 (30%), Positives = 120/244 (49%)
Query: 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLY 188
+GR Y + + EAE ++ L E G P A+ NNLAE+ R +D+AE LY
Sbjct: 72 AGR-YLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAESLY 130
Query: 189 LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248
+A++I +E+ G E G+ NL + + E A Y A+ I G+V+G + Y
Sbjct: 131 RQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHYRY 190
Query: 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRL 307
A +LA +L + ++EAL +++ I + GE S+ R L LA+ R
Sbjct: 191 ATAQNNLAGLLQDMLRFEEAEALCRQALEITSKTLGESHSVYATR-LNNLAELLGTTERY 249
Query: 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367
+AE + R+ L I + + G D I LA+ L++TG EA+ L+ + LE + +
Sbjct: 250 GEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITHRTL 309
Query: 368 PQDH 371
+ H
Sbjct: 310 GEAH 313
|
|
| ASPGD|ASPL0000042280 AN1580 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 74/287 (25%), Positives = 129/287 (44%)
Query: 87 DISIESTSQNDTEGE-NAFGLRKIEDG-SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEK 144
++ + TS+ E GL+ +E +V+ H + Y+ QG+ EAEK
Sbjct: 802 ELQVLETSKAGRWNEAEKLGLQVLETRKAVLGPEHPDTLSSMANLASTYWNQGRWNEAEK 861
Query: 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204
L L L+ K G P S+ NLA Y + +++AE L L+ ++ + GPE
Sbjct: 862 LGLQVLETRKAVLGPEHPDTLSSMANLASTYWNQGRWNEAEKLELQVLETSKAVLGPEHP 921
Query: 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264
+ NL Y Q + DA + L+ + VLG + D +M +LA+ + QG+
Sbjct: 922 DTLTSMANLASTYRNQGRWNDAEKLDVQVLETRKAVLGPEHPDTLTSMANLASTYWNQGR 981
Query: 265 ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324
N++E L ++ + + + + + + LA TY R +AE ++ ++L ++
Sbjct: 982 WNEAEKLDVQVLETRKAVLGPEHLHTLSSMANLASTYWNQGRWNEAEKLEVQVLETRKAV 1041
Query: 325 KGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDH 371
G DT+ + LA T S G EA +L +C R + + H
Sbjct: 1042 LGPEHPDTLSSMHNLAYTYHSMGRNTEASDLMTQCATLRARNIGSTH 1088
|
|
| ASPGD|ASPL0000061567 AN1071 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 77/309 (24%), Positives = 137/309 (44%)
Query: 63 RLWILLFAPASLIYGITPNPVLAEDISIESTSQNDTEGENA--FGLRKIEDGSVVSNI-H 119
+L+I + ++ G+ L ++ ST QN A ++ +E + + H
Sbjct: 867 KLFIHVMETRKIVLGVEHPATLTSMANLASTYQNQGRWNEAEKLEIQVMETSKITLGVKH 926
Query: 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK 179
S + Y QG+ EAEKLFL ++ G + P S+ NLA YR +
Sbjct: 927 PSTLSSMANLASTYRSQGRWNEAEKLFLQVMEIRNIVLGAKHPSTLSSMANLASTYRNQG 986
Query: 180 AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239
+++AE L ++ I + G E + NL Y Q + +A + +
Sbjct: 987 RWNEAEKLEVQVIDTAKTVLGAEHPSTLSSMANLASTYRNQGRWNEAERLEVQVINTAKT 1046
Query: 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
VLG + + +M +LA+ + QG+ N++E L ++ I + +R + +LA
Sbjct: 1047 VLGAEHPNTLSSMANLASTYWSQGRWNEAEKLEVQVIEAFKTVLGSKHPNTLRSIAHLAS 1106
Query: 300 TYVKANRLTDAETVQRKILHIMESSK---GWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356
TY K R AE + +H+ E+ K G DT+ + LA T ++ G +A++L
Sbjct: 1107 TYQKQGRWNKAEKL---FMHVTETRKIMLGVEHPDTLSSMANLASTYRNQGRWDKAEKLS 1163
Query: 357 ERCLEARKK 365
+ +E RK+
Sbjct: 1164 MQVMETRKR 1172
|
|
| ASPGD|ASPL0000010369 tprA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 66/258 (25%), Positives = 124/258 (48%)
Query: 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173
V+ + H + Y+ QG+ EAE L + ++ K+ G P ++ NLA
Sbjct: 49 VLGSWHPDTLTSMANLASTYWNQGRWKEAEALEVQVMETRKQVLGSWHPDTLTSKANLAL 108
Query: 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERA 233
Y+ + + +AE L ++ ++ Q+ GPE + NL Y Q +L++A +
Sbjct: 109 TYQYQGRWKEAEWLEVQVMETRQQVLGPEHPNTLTSMANLALTYRNQGQLKEAERLGVQV 168
Query: 234 LKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293
++ +VLG + D +M +LA+ + QGK ++EALF+ + ++ + +
Sbjct: 169 METSKQVLGSDHDDTLASMANLASTYWSQGKWKEAEALFIRVLNTQKQVLGLEHPDTLAS 228
Query: 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353
+ LA TY + +AE + + + I + G DT+I+ LA T +S G L +A+
Sbjct: 229 MADLASTYQNQGQWKEAEELFIQAMEIQTTVLGSEHPDTLISTANLASTYRSQGRLKQAE 288
Query: 354 ELFERCLEARKKLMPQDH 371
L + +E K+++ DH
Sbjct: 289 RLGVQVMETSKQVLGPDH 306
|
|
| UNIPROTKB|Q6P597 KLC3 "Kinesin light chain 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 70/270 (25%), Positives = 124/270 (45%)
Query: 89 SIESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLS 148
S+ + + + +G A G + G I ++ R + Y QG+ A L
Sbjct: 176 SLFPSEEEERKGPEAAGAAAAQQGGY--EI-PARLRTLHNLVIQYAGQGRYEVAVPLCRQ 232
Query: 149 ALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208
AL++ + G P VA+ N LA +YR + + +A L +A++I +++ GPE +
Sbjct: 233 ALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAA 292
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
+NL Y + + +A +RAL+I+ +VLG + D A + +LA + QGK D
Sbjct: 293 TLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDV 352
Query: 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328
E + ++ I E G + LA Y+K N+ AE + ++ILH +
Sbjct: 353 ERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKEDLPAPLG 412
Query: 329 SLDTVIAAEGLALTLQSTGSLMEAQELFER 358
+ +T A + L+ + SL + +E R
Sbjct: 413 APNTGTAGDA-EQALRRSSSLSKIRESIRR 441
|
|
| UNIPROTKB|F1MM11 KLC3 "Kinesin light chain 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 68/270 (25%), Positives = 122/270 (45%)
Query: 89 SIESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLS 148
S+ + + + G A G + G I ++ R + Y QG+ A L
Sbjct: 176 SLFPSEEEERRGPEAVGAAAAQQGGY--EI-PARLRTLHNLVIQYAGQGRYEVAVPLCRQ 232
Query: 149 ALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208
AL++ + G P VA+ N LA +YR + + +A L +A++I +++ GPE +
Sbjct: 233 ALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAA 292
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
+NL Y + + +A +RAL+I+ +VLG + D A + +LA + QGK +
Sbjct: 293 TLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEEV 352
Query: 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328
E + ++ I E G + LA Y+K N+ AE + ++ILH
Sbjct: 353 ERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPLG 412
Query: 329 SLDTVIAAEGLALTLQSTGSLMEAQELFER 358
+ +T ++ TL+ + S + +E R
Sbjct: 413 APNTGTTSDTQQQTLRRSSSFSKLRESIRR 442
|
|
| ASPGD|ASPL0000027031 AN8545 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 73/240 (30%), Positives = 114/240 (47%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QGK EAEKL L L + G+ + + +NLA +Y ++A L + +
Sbjct: 837 YVHQGKYKEAEKLQLEVLSTS----GDVENSLRGI-SNLASIYSDLGRAEEAAKLRQKVL 891
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
K+ ES G + HNL Q Y Q +L +A + LK RVLG + A +M
Sbjct: 892 KLETESLGVDHPDTIATMHNLAQTYESQGRLAEAEDLAVQVLKTNKRVLGLKHPSTARSM 951
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT-CIRRLRYLAQTYVKANRLTDAE 311
LA V QG+ ++E L +E++ I ++ G + T + LA TY R ++AE
Sbjct: 952 ATLAVVYRGQGRLEEAEELLIEAVDI-SQHVFGTTHTYTVTMTSELATTYYLQERWSEAE 1010
Query: 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDH 371
+Q +L + G DT+++ LALT ++ G+ A ++ E C E K + DH
Sbjct: 1011 EIQDHVLKLRMEKLGPMHPDTLLSMYRLALTWRAAGAQALAIQMMEECFERSAKYLGPDH 1070
|
|
| UNIPROTKB|Q2TBQ9 KLC3 "Kinesin light chain 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 68/270 (25%), Positives = 121/270 (44%)
Query: 89 SIESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLS 148
S+ + + + G A G + G I ++ R + Y QG+ A L
Sbjct: 176 SLFPSEEEERRGPEAVGAAAAQQGGY--EI-PARLRTLHNLVIQYAGQGRYEVAVPLCRQ 232
Query: 149 ALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208
AL++ + G P VA+ N LA +YR + + +A L +A++I +++ GPE +
Sbjct: 233 ALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAA 292
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
+NL Y + + +A +RAL+I+ +VLG + D A + +LA + QGK +
Sbjct: 293 TLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEEV 352
Query: 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328
E + ++ I E G + LA Y+K N+ AE + ++ILH
Sbjct: 353 ERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPLG 412
Query: 329 SLDTVIAAEGLALTLQSTGSLMEAQELFER 358
+ +T ++ TL + S + +E R
Sbjct: 413 APNTGTTSDTQQQTLSRSSSFSKLRESIRR 442
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 377 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-11 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-11 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-04 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-04 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-11
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y+ G EA + + AL E DP A A NLA Y +++A Y
Sbjct: 7 GNLYYKLGDYDEALEYYEKAL--------ELDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+A+++ P++ + A++NLG Y K E+A YE+AL++
Sbjct: 59 KALEL-----DPDNAK---AYYNLGLAYYKLGKYEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-11
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
P +A+A NNLA + R +D+A L +A+++ G + A +NL + YL
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLAL 59
Query: 221 RKLEDACTYYERALKI 236
++A Y E+AL +
Sbjct: 60 GDYDEALEYLEKALAL 75
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-10
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDA 226
A NL LY +D+A Y +A+++ ++ A++NL Y K E+A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--------ADAYYNLAAAYYKLGKYEEA 53
Query: 227 CTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281
YE+AL++ + D A Y+L Y GK ++ + +++ +
Sbjct: 54 LEDYEKALEL--------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-10
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ 262
+ A +NL ++A E+AL++ R LG + + A + +LA +
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLAL 59
Query: 263 GKENDSEALFLESIRILEE 281
G +++ +++ + E
Sbjct: 60 GDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-07
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G EA +L AL+ A+E GE P A A NNLA LY +D+A
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGDYDEALEYLE 70
Query: 190 EAIKILQE 197
+A+ + +
Sbjct: 71 KALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
A NLG Y ++A YYE+AL++ + D AD Y+LA Y GK ++
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEA 53
Query: 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323
+ +++ + +N + L Y K + +A K L + +
Sbjct: 54 LEDYEKALELDPDNAKA--------YYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304
+ D A + +LA VL G +++ L +++ + E GE D R L LA+ Y+
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGE-DHPETARALNNLARLYLAL 59
Query: 305 NRLTDAETVQRKILHIMES 323
+A K L + E+
Sbjct: 60 GDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-05
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353
L LA + +A + K L + + +T A LA + G EA
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGE-DHPETARALNNLARLYLALGDYDEAL 66
Query: 354 ELFERCLEARKK 365
E E+ L R+
Sbjct: 67 EYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (98), Expect = 2e-04
Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 33/237 (13%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G+L EA +L AL+ P++A A NL L +++A L
Sbjct: 66 ALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALGKYEEALELLE 119
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+ + + E + A + LG + E+A YE+AL++
Sbjct: 120 KALALDPDPDLAEALLALGALYELGDY-------EEALELYEKALEL------------D 160
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+ LA L G ++ + E++ +LE+ + + L L Y+K + +
Sbjct: 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366
A K L + D A LAL L G EA E E+ LE L
Sbjct: 221 ALEYYEKALELDP--------DNAEALYNLALLLLELGRYEEALEALEKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 49/183 (26%), Positives = 69/183 (37%), Gaps = 35/183 (19%)
Query: 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196
G AEA K + L+ P+ A LAELY +K +DKA Y +K
Sbjct: 750 GNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK-KA 800
Query: 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256
V +NL YL + K A Y ERALK L DT L
Sbjct: 801 PDN-------AVVLNNLAWLYL-ELKDPRALEYAERALK-----LAPNIPAILDT---LG 844
Query: 257 TVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY-LAQTYVKANRLTDAETVQR 315
+L +G+ + + L +++ I E +RY LA + R +A
Sbjct: 845 WLLVEKGEADRALPLLRKAVNIAPEAAA---------IRYHLALALLATGRKAEARKELD 895
Query: 316 KIL 318
K+L
Sbjct: 896 KLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 4e-04
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202
A++ NNLA R + +++AE L EA+ I + GP+
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39
|
Length = 42 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 6e-04
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL-VQRKL 223
A A NL +D+A Y +A+++ ++ A++NL YL + +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDN--------AEAYYNLALAYLKLGKDY 54
Query: 224 EDACTYYERALKI 236
E+A E+AL++
Sbjct: 55 EEALEDLEKALEL 67
|
Length = 69 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247
+ +NL + Q + E+A E AL I+ RVLG + D
Sbjct: 4 SLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42
|
Length = 42 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (89), Expect = 0.002
Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 20/196 (10%)
Query: 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187
+ G L EA + AL+ ++ + +++A L
Sbjct: 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152
Query: 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247
Y +A+++ PE + A LG + E+A E+ALK+ D
Sbjct: 153 YEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD-------D 200
Query: 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL 307
A+ + +L + GK ++ + +++ + +N L LA ++ R
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN--------AEALYNLALLLLELGRY 252
Query: 308 TDAETVQRKILHIMES 323
+A K L +
Sbjct: 253 EEALEALEKALELDPD 268
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 100.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.85 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.83 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.82 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.82 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.82 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.77 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.76 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.75 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.74 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.72 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.71 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.7 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.65 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.62 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.62 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.58 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.45 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.44 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.39 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.39 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.38 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.35 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.31 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.29 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.29 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.26 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.26 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.24 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.23 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.21 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.21 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 99.21 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.2 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 99.17 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.14 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.12 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.12 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 99.12 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.1 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.1 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.08 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.03 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.0 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 99.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.0 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.94 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.93 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.93 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.91 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.91 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.91 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.9 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.89 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.84 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.76 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.71 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.7 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.69 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.69 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.62 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.59 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.58 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.56 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.55 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.53 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.49 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.48 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.46 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.44 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.44 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.39 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.39 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.37 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.31 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.29 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.27 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.22 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.19 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.18 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 98.17 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.16 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 98.16 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.15 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 98.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.12 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.05 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.02 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.01 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.01 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 98.0 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.97 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.94 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.94 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 97.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.8 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.8 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.79 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.77 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.75 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.69 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.69 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.68 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.56 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.54 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.53 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.52 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.44 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 97.43 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.4 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 97.36 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.35 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.34 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.32 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.32 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.26 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 97.25 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.24 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.24 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.13 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.09 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.09 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.98 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.94 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 96.9 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.86 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 96.79 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 96.77 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.74 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.69 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.69 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 96.67 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.63 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.62 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 96.5 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.31 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.31 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 96.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.24 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 96.18 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.07 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 96.02 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 96.01 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.99 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 95.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.94 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.93 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 95.87 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.86 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.82 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 95.68 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 95.63 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.41 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 95.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.29 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.18 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.16 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 95.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.13 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 95.07 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 95.05 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 94.98 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.97 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.83 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.74 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 94.73 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.63 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 94.55 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.23 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 94.2 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.16 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.16 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 94.14 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 93.98 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.91 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 93.9 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 93.87 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.84 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 93.81 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 93.79 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 93.75 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.63 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.58 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.52 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.52 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.18 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.84 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.83 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 92.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.68 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 92.57 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.57 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.48 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 92.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.19 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 92.19 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.07 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 92.04 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 91.94 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 91.88 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.6 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.3 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 91.15 | |
| KOG2908 | 380 | consensus 26S proteasome regulatory complex, subun | 91.12 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.99 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 90.9 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 90.57 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.43 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 90.21 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 90.19 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.11 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 90.04 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.92 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.91 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 89.3 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 89.04 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 89.01 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.98 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.59 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 88.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.05 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 87.67 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 87.58 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 87.33 | |
| KOG2908 | 380 | consensus 26S proteasome regulatory complex, subun | 87.3 | |
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 87.24 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 87.05 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 86.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 86.26 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 86.19 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 85.79 | |
| COG2178 | 204 | Predicted RNA-binding protein of the translin fami | 85.72 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 85.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 85.57 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 84.43 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 83.9 | |
| PF05053 | 618 | Menin: Menin; InterPro: IPR007747 MEN1, the gene r | 83.81 | |
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 83.56 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.36 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 83.01 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.38 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 82.19 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 82.13 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 81.88 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.29 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 80.66 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 80.23 |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=228.74 Aligned_cols=283 Identities=25% Similarity=0.278 Sum_probs=269.7
Q ss_pred cccCCChhhhhhhhhhhhccc-cccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDG-SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
...+|++++|..++..+++.. ...+.+++........+|.+|...+++.+|+..|++|+.+.+..+|+++|..+.++.+
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456899999999999999874 4466789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++..++++++|..++++++++.....+++++..+.
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
.+.++|.+|..+|++++|.+++++++.+.++..+..+......+.++|..|.+.+++.+|...|.++..+. +..|+++|
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~ 447 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCC
Confidence 99999999999999999999999999999999887788888899999999999999999999999999999 88999999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQVC 375 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 375 (377)
++...+.+|+.+|..+|++++|.++.++++...+...|..+|...
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVE 492 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 999999999999999999999999999999999999999888764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-30 Score=220.72 Aligned_cols=261 Identities=27% Similarity=0.380 Sum_probs=251.3
Q ss_pred cccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 017109 113 SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192 (377)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 192 (377)
...+...|....+...++..|...|+|++|+..++.++++..+..|.+++.....+..+|.+|..++++++|+..|++|+
T Consensus 189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHH
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALF 272 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (377)
.+.+...|++++..+.++.+||.+|...|++++|..++++|+++.++..+..++.....+.+++.++..++++++|..++
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA 352 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 352 (377)
++++++.....+.+++.+..++.+||.+|..+|++++|.+++++++.+.+...+..++.....+..+|..|.+.+++.+|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 99999999888888889999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCcc
Q 017109 353 QELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 353 ~~~~~~al~~~~~~~~~~~~~~ 374 (377)
...|.++..+. +..|++||.+
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~ 449 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCch
Confidence 99999999999 8899999986
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=202.20 Aligned_cols=211 Identities=22% Similarity=0.300 Sum_probs=111.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|...++|.++|.+|...+.+++|+..|.+|+.+ .|..+.++.++|.+|..+|..+-|+..|++++++
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---- 315 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---- 315 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc----
Confidence 4555677777777777777777777777777765 4444455555555555555555555555555544
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.|....+|+++|..+...|+..+|+.+|.+++.+. +..+.++++||.++.++|++++|..+|.++++.
T Consensus 316 ----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 316 ----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred ----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 23334455555555555555555555555555553 344444555555555555555555555555543
Q ss_pred HHHcCCC--------------------------CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 279 LEENGEG--------------------------DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 279 ~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
.+..... -.|..+.++.++|..|..+|+.+.|+.+|.+++.+ .|..
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~ 455 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTF 455 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHH
Confidence 1110000 02333444444444444444444444444444444 2444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+++..+||.+|...|+..+|+..|++++.
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 55555555555555555555555555555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=199.17 Aligned_cols=207 Identities=23% Similarity=0.294 Sum_probs=155.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|....++.++|..+...|+..+|..+|.+++.+ .|..++++++||.+|..+|.+++|..+|.++++.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v----- 383 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV----- 383 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----
Confidence 444455666666666666666666666666655 4555666666666666666666666666666665
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.|..+.+++++|.+|..+|++++|+.+|++++.+. |..+.++.++|..|..+|+.+.|+..|.+++.+
T Consensus 384 ---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~- 451 (966)
T KOG4626|consen 384 ---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI- 451 (966)
T ss_pred ---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-
Confidence 45556777777777777777777777777777774 777778888888888888888888888887775
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
.|..+.++.+||.+|...|+..+|+..|+.++++. |+...++.+++.++.-..++..=-+.+++.
T Consensus 452 -------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--------PDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 452 -------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--------PDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred -------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--------CCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 67888999999999999999999999999999883 555789999999988777777766777777
Q ss_pred HHHHHhh
Q 017109 360 LEARKKL 366 (377)
Q Consensus 360 l~~~~~~ 366 (377)
.++.+..
T Consensus 517 ~sivrdq 523 (966)
T KOG4626|consen 517 VSIVRDQ 523 (966)
T ss_pred HHHHHHH
Confidence 7776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=174.46 Aligned_cols=232 Identities=20% Similarity=0.159 Sum_probs=181.1
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+++... |.....+..+|.++...|++++|+..++++++. +|....++..+|.
T Consensus 343 ~~g~~~eA~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~ 407 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQ 407 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 4677777777777776542 344567888888888888888888888888876 5666778888999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
++...|++++|+.+|++++++ .|.....+.++|.++..+|++++|+..+++++... |....++.
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~ 471 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYN 471 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHH
Confidence 999999999999999998887 23335678889999999999999999999988764 56677889
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+|.++...|++++|+..|++++++.+.... ........+...+.++...|++++|+.++++++.+. |...
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--------p~~~ 542 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--------PECD 542 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------CCcH
Confidence 9999999999999999999999988554321 111222222233334445799999999999999862 3345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++..+|.++...|++++|+.+|++++++.++
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 67889999999999999999999999988653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=171.37 Aligned_cols=230 Identities=17% Similarity=0.197 Sum_probs=188.6
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
+.+++|...+.+++... ...|..+.++..+|.++...|++++|+..+++++++ +|....++..+|.++
T Consensus 308 ~~y~~A~~~~~~al~~~----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMN 375 (615)
T ss_pred hhHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 56777777777776544 245677788999999999999999999999999987 677888999999999
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+.+++++++. .|++ ..++..+|.++...|++++|+.+|++++++. |....++.++
T Consensus 376 ~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~~~~~~l 439 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFIFSHIQL 439 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCHHHHHHH
Confidence 9999999999999999987 3333 5789999999999999999999999999884 5667789999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..|++++++...... .+......
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l 510 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPL 510 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHH
Confidence 999999999999999999999863 223456788999999999999999999999988543211 11112222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+...+.++...|++++|..++++++.+
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333334455579999999999999885
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=150.07 Aligned_cols=267 Identities=16% Similarity=0.165 Sum_probs=221.7
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...++|++|......-+.....++ +...-+.+-.++|..+...|.|++|+.+..+-+.++++. .|......+++++|
T Consensus 66 fyL~DY~kAl~yH~hDltlar~lg-dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlg 142 (639)
T KOG1130|consen 66 FYLKDYEKALKYHTHDLTLARLLG-DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLG 142 (639)
T ss_pred hhHhhHHHHHhhhhhhHHHHHHhc-chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhh
Confidence 345777777777666555554444 333445667789999999999999999999999999988 56667789999999
Q ss_pred HHHHHhcC--------------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 173 ELYRVKKA--------------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 173 ~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
.+|...|+ ++.|.++|..-+++.++.. +......++.++|..|+-.|+|+.|+...+.
T Consensus 143 nvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~ 220 (639)
T KOG1130|consen 143 NVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKL 220 (639)
T ss_pred hhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHH
Confidence 99999876 4566777777777766652 3455678999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 233 ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
-+.+.++.+.. ...-.++.++|.++.-.|+++.|+++|++.+.+..+.+ +....+...+.||..|.-..++++|+.
T Consensus 221 RL~ia~efGDr--AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 221 RLEIAQEFGDR--AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHhhhH--HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99998776433 44567899999999999999999999999999999887 556677788999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
|+.+-+.+.++..+... ...+++.||..+-..|..++|..+.++.+++..++-++.
T Consensus 297 Yh~rHLaIAqeL~DriG--e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIG--ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999888755433 388999999999999999999999999999988876543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=146.42 Aligned_cols=260 Identities=19% Similarity=0.199 Sum_probs=212.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|++.....++..+++... .+-.....+|.++|..|+..++|.+|+++...=+.+.+.. .+...-+.+.-+||++
T Consensus 30 ~gdcraGv~ff~aA~qvGT---eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGT---EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNT 104 (639)
T ss_pred ccchhhhHHHHHHHHHhcc---hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccch
Confidence 3455445555555554332 1333445678999999999999999999998888777666 4455667888899999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK--------------------LEDACTYYERAL 234 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al 234 (377)
+...|.|++|+.+..+-+.+.++.. +....+.+++++|.+|...|+ ++.|.++|..-+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988874 456678899999999998765 455677777777
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
++.++.... .....++.+||..|+-.|+|+.|+...+.-+.+.++.+ +....-.++.++|.++.-.|+++.|+++|
T Consensus 183 ~l~~~lgDr--~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 183 ELSEKLGDR--LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHhhhH--HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 776655332 44577899999999999999999999999999999987 55666678999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
+.++.+..+...... .+...+.||..|.-..++++|+.|..+-+.|.+++-
T Consensus 259 K~tl~LAielg~r~v--EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTV--EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred HHHHHHHHHhcchhH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887755433 378889999999999999999999999999988753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-18 Score=147.72 Aligned_cols=234 Identities=18% Similarity=0.179 Sum_probs=184.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|.....+.+.... ........++..+|.+|...|++++|+..|+++++. .+....++..+
T Consensus 79 ~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~l 147 (389)
T PRK11788 79 FRRRGEVDRAIRIHQNLLSRPD---LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQL 147 (389)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHH
Confidence 3456888888887776665321 122234567899999999999999999999999864 45567788999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+.++...|++++|++.++++++.... +........+..+|.++...|++++|+.+++++++.. |....+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~ 216 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRA 216 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHH
Confidence 99999999999999999998875211 1122234567789999999999999999999998874 445668
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++...|++++|+..++++++. +......++..++.+|...|++++|...++++++.. ++.
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~-- 282 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQ-------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA-- 282 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc--
Confidence 889999999999999999999999875 222334557788999999999999999999988762 221
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.....++.++...|++++|...++++++..
T Consensus 283 --~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 283 --DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 234789999999999999999999998864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=159.89 Aligned_cols=209 Identities=21% Similarity=0.188 Sum_probs=187.0
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
+.+|...++|..+|.+|-.+++++.|+++|++|+++ +|..+.+|..+|.-+.....+|.|..+|++|+..
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 345556688999999999999999999999999988 8899999999999999999999999999999987
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
++....+|+.+|.+|.++++++.|+-+|++|+++. |........+|.++.+.|+.++|+.++++|+
T Consensus 485 ------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 485 ------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred ------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 45557899999999999999999999999999995 7778889999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
.+-++ .....+..|.++...+++++|+..+++..++. |+...++..+|.+|.+.|+.+.|+..|
T Consensus 551 ~ld~k--------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 551 HLDPK--------NPLCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hcCCC--------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 87322 22346788999999999999999999988875 566889999999999999999999999
Q ss_pred HHHHHHHHh
Q 017109 357 ERCLEARKK 365 (377)
Q Consensus 357 ~~al~~~~~ 365 (377)
.-|.++.++
T Consensus 615 ~~A~~ldpk 623 (638)
T KOG1126|consen 615 SWALDLDPK 623 (638)
T ss_pred HHHhcCCCc
Confidence 999886443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=156.83 Aligned_cols=220 Identities=21% Similarity=0.243 Sum_probs=187.2
Q ss_pred ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------------hCCCCCHhHHHH
Q 017109 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKE--------------------------GFGERDPHVASA 167 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~~~~~~~~~~~ 167 (377)
.+...++.+.-++.++|..|+..++|++|..+|+.+.+...- .+-..++....+
T Consensus 344 klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPes 423 (638)
T KOG1126|consen 344 KLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPES 423 (638)
T ss_pred hhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHH
Confidence 344455566688899999999999999999999987653110 011334667788
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
|..+|++|..+++++.|+++|++|+.+ +|..+.+|..+|.-+....++|.|..+|++|+... +.
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--------~r 487 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--------PR 487 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--------ch
Confidence 999999999999999999999999998 56668899999999999999999999999999884 77
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
...+|+.+|.+|.++++++.|+-+|++|+++ .|....+...+|.++.+.|+.++|+.++++|+.+-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld------ 553 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD------ 553 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC------
Confidence 7899999999999999999999999999997 33444567889999999999999999999999873
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|......+..|.++...+++++|+..+++..++.++
T Consensus 554 --~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 554 --PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred --CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 334677889999999999999999999998776543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-18 Score=127.40 Aligned_cols=209 Identities=20% Similarity=0.130 Sum_probs=180.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+....+.+...+|.-|+..|++..|...+++|++. +|....++..++.+|...|+.+.|.+.|++|+++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---
Confidence 44556788999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+|..+.+++|.|..++.+|++++|...|++|+.. |..+....++.|+|.|..+.|+++.|.++++++++
T Consensus 99 -----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4555789999999999999999999999999875 44566688999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
+.+.. ......++..+...|++..|..+++...... ...+..+....++-...|+.+.|..+-.
T Consensus 168 ~dp~~--------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 168 LDPQF--------PPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred hCcCC--------ChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 84433 2345678999999999999999998765442 2347778888889999999999988877
Q ss_pred HHHHHHH
Q 017109 358 RCLEARK 364 (377)
Q Consensus 358 ~al~~~~ 364 (377)
+....++
T Consensus 232 qL~r~fP 238 (250)
T COG3063 232 QLQRLFP 238 (250)
T ss_pred HHHHhCC
Confidence 7666543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=136.02 Aligned_cols=207 Identities=20% Similarity=0.189 Sum_probs=172.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.......+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 94 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--- 94 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 33445788999999999999999999999999876 5666788999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.+.+ ...+.++|.++...|++++|+..+++++... ..+.....+..+|.++...|++++|...+.++++
T Consensus 95 --~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 --NPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred --CCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333 4678899999999999999999999998742 1234456788899999999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
..+ + ....+..+|.++...|++++|..++++++... + .....+..++.++...|+.++|..+.+
T Consensus 164 ~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 IDP-----Q---RPESLLELAELYYLRGQYKDARAYLERYQQTY-----N---QTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hCc-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 622 2 23457789999999999999999999998862 1 225566688999999999999999887
Q ss_pred HHHHH
Q 017109 358 RCLEA 362 (377)
Q Consensus 358 ~al~~ 362 (377)
.+...
T Consensus 228 ~~~~~ 232 (234)
T TIGR02521 228 QLQKL 232 (234)
T ss_pred HHHhh
Confidence 76553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-18 Score=141.88 Aligned_cols=237 Identities=20% Similarity=0.151 Sum_probs=197.1
Q ss_pred cccCCChhhhhhhhhhhhccccc-ccc--------------------------chhhhHHHHHHHHHHHHHcCCHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSV-VSN--------------------------IHTSKWRVFTDSGRDYFLQGKLAEAEK 144 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 144 (377)
...+.++++|+..+.+.....+- +++ -+....++...+|+.|...++.++|+.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 44577888888877776654321 110 011112344557899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH
Q 017109 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224 (377)
Q Consensus 145 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 224 (377)
+|++|+++ +|....++..+|.-|..+.+...|++.|++|+++ +|..-.+|+.+|+.|..++.+.
T Consensus 352 YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 352 YFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchH
Confidence 99999998 8899999999999999999999999999999998 4445689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 017109 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (377)
=|+-+|++|.... |.....+..||.+|.+.++.++|+++|.+++.... ....++..+|.+|.+.
T Consensus 416 YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--------te~~~l~~LakLye~l 479 (559)
T KOG1155|consen 416 YALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--------TEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------cchHHHHHHHHHHHHH
Confidence 9999999999985 77788999999999999999999999999998622 1335688999999999
Q ss_pred CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 305 NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 305 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
++.++|..+|++.++.. ...|...+.+..+...|+.-+.+.+++++|..+..+++.
T Consensus 480 ~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999999999976 333455666788888899999999999999998766654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=147.74 Aligned_cols=214 Identities=20% Similarity=0.270 Sum_probs=190.6
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
+..|..+-.|+.+|..|...|++.+|..+|.++-.+ ++..+.+|...|..+...|..++|+..|..|-++..
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 466777888999999999999999999999999987 889999999999999999999999999999999865
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
... .....+|.-|..++++.-|..+|.+|+.++ |..+..+..+|.+.+..+.|.+|..+|+.++
T Consensus 378 G~h--------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 378 GCH--------LPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred CCc--------chHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 432 245678999999999999999999999997 7777889999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
...+..... .+.+.-.+.+||.++.+++++++|+.++++++... |....++..+|-+|..+|+++.|+.+|
T Consensus 442 ~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 442 EVIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 777776533 33566678999999999999999999999999885 444889999999999999999999999
Q ss_pred HHHHHHH
Q 017109 357 ERCLEAR 363 (377)
Q Consensus 357 ~~al~~~ 363 (377)
.+++.+.
T Consensus 513 hKaL~l~ 519 (611)
T KOG1173|consen 513 HKALALK 519 (611)
T ss_pred HHHHhcC
Confidence 9999854
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-17 Score=143.08 Aligned_cols=234 Identities=16% Similarity=0.153 Sum_probs=186.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..+++++... .........++..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~L 113 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQEL 113 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHH
Confidence 345688888888888888643 3446788999999999999999999999887631 01112345678999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.+|...|++++|+..++++++. .+....++..++.++...|++++|++.+++++.... .+........
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~ 182 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHF 182 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHH
Confidence 99999999999999999999875 233357889999999999999999999999877531 1111223456
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|++.++++++.. + ..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p--~~ 247 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADP--------QCVRASILLGDLALAQGDYAAAIEALERVEEQD-----P--EY 247 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCc--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----h--hh
Confidence 77899999999999999999999998622 233467789999999999999999999998752 1 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...++..++.+|...|++++|...++++++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2466788999999999999999999999885
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-17 Score=150.57 Aligned_cols=231 Identities=11% Similarity=-0.001 Sum_probs=150.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+.+... |....++..+|.++...|++++|+..+++++++ .|....++..+
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~l 150 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVN-------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALH 150 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHH
Confidence 345788898888888877543 334567889999999999999999999999987 66777788888
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHH--------------------------HhcCCCchhHHHHHHHHHHHHHHccCHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQ--------------------------ESFGPEDIRIGVAFHNLGQFYLVQRKLED 225 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~--------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 225 (377)
+.++...|++++|+..+++++.... +....+..........++.++...|++++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 9999999999999888877654310 00000000001122334556666777777
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh----HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 017109 226 ACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND----SEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301 (377)
Q Consensus 226 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 301 (377)
|+..+++++... |....++..+|.++...|++++ |+..+++++++. |....++..+|.++
T Consensus 231 A~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l 294 (656)
T PRK15174 231 AIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHH
Confidence 777777766542 4445666677777777777765 667777776651 22334556667777
Q ss_pred HHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 302 VKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 302 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
...|++++|+..++++++.. |....++..+|.++...|++++|+..+++++.
T Consensus 295 ~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777776666542 22244555556666666666666666655554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=138.33 Aligned_cols=216 Identities=19% Similarity=0.223 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC------------CC--------------CHhHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG------------ER--------------DPHVASACNNLAELYRV 177 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~--------------~~~~~~~~~~la~~~~~ 177 (377)
-+-...|.+...+.++++|+..|+...+.-.-..+ .+ +....++...+|+-|..
T Consensus 263 ~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl 342 (559)
T KOG1155|consen 263 YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL 342 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHH
Confidence 45567788899999999999999988753000000 00 11122233456788888
Q ss_pred hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 178 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
.++.++|+.+|++|+++ +|....++..+|.-|..+++...|++.|++|+++. |....+++.+|.
T Consensus 343 r~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQ 406 (559)
T ss_pred HHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhH
Confidence 89999999999999998 66678899999999999999999999999999996 778899999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 337 (377)
.|..++.+.=|+-+|+++.+. .|.....+..||.||.+.++.++|+.+|.+++..... ...++.
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~ 470 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALV 470 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHH
Confidence 999999999999999999986 2334466889999999999999999999999987422 257899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 338 GLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 338 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
.||.+|.+.++..+|..+|++.++.. ...|...|
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~ 504 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDD 504 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-Hhhcccch
Confidence 99999999999999999999999966 33343333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-17 Score=149.68 Aligned_cols=237 Identities=16% Similarity=0.086 Sum_probs=173.5
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAK------------------ 154 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------ 154 (377)
...|++++|...+.+++... |....++..+|.++...|++++|+..+++++....
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~ 193 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRL 193 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCH
Confidence 44677777777777776532 22345566677777777777777776665543210
Q ss_pred --------hhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHH-
Q 017109 155 --------EGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLED- 225 (377)
Q Consensus 155 --------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~- 225 (377)
.....+.+........++.++...|++++|+..+++++.. .+ ....++..+|.++...|++++
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p---~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GL---DGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CC---CCHHHHHHHHHHHHHcCCchhh
Confidence 0000000011122234566777788888888888887775 23 335788899999999999986
Q ss_pred ---HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 017109 226 ---ACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV 302 (377)
Q Consensus 226 ---A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 302 (377)
|+..+++++... |....++..+|.++...|++++|+..++++++.. ++ ...++..+|.++.
T Consensus 266 ~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~---~~~a~~~La~~l~ 329 (656)
T PRK15174 266 KLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PD---LPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHH
Confidence 899999999874 6677899999999999999999999999999862 22 3345778999999
Q ss_pred HhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 303 KANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
..|++++|+..|++++... |........+|.++...|++++|...|+++++..++..+
T Consensus 330 ~~G~~~eA~~~l~~al~~~--------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREK--------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HCCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 9999999999999988762 333455666789999999999999999999998776543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-17 Score=122.51 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=152.7
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
......+...||.-|+..|++..|...++++++. +|....++..++.+|...|+.+.|.+.|++|+.+.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--- 99 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--- 99 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---
Confidence 3456788999999999999999999999999998 55567899999999999999999999999999995
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....+++|.|..++.+|++++|...|++++.. +..+....++.|+|.|..+.|+++.|.++|++++++
T Consensus 100 -----p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 100 -----PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred -----CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 778899999999999999999999999999873 345566778999999999999999999999999998
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. |........++..+...|++..|..++++...
T Consensus 169 d--------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 169 D--------PQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred C--------cCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 4 44467788899999999999999999887654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=144.87 Aligned_cols=222 Identities=13% Similarity=0.057 Sum_probs=171.4
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhhCCCCCHhHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ---------GKLAEAEKLFLSALQEAKEGFGERDPHVAS 166 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 166 (377)
+++++|...+.++++.. |....++..+|.++... +++++|+..+++++++ +|....
T Consensus 275 ~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~ 339 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQ 339 (553)
T ss_pred HHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHH
Confidence 44556666666666433 33456677777776533 4489999999999987 788889
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
++..+|.++...|++++|+..+++++++ .|++ ..++..+|.++...|++++|+..+++++++. |
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--------P 403 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLL-----SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD--------P 403 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------C
Confidence 9999999999999999999999999998 3333 5788999999999999999999999999984 4
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
....+...++.++...|++++|+..++++++. ..+.....+..+|.++..+|++++|...+.+....
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------ 470 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------ 470 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc------
Confidence 33444455666777899999999999998765 22333445788999999999999999999876543
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 327 WNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 327 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.+........++..|...|+ +|...+++.++....
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred --cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 23345667778888888884 788878776665443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-17 Score=134.45 Aligned_cols=231 Identities=18% Similarity=0.123 Sum_probs=188.9
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|++..+...+..+|.... .....|..+|..|....+..+....|.+|.++ +|....+|+..|.+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDP-------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQM 403 (606)
T ss_pred cCCchhhhhhHHHHHhcCc-------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHH
Confidence 4555556666666554433 22344889999999999999999999999988 88889999999999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
++-.+++++|+.-|++++.+ +|..+..+..++...++++++++++..|+.+...+ |..+.++..
T Consensus 404 ~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy~~ 467 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHHHH
Confidence 99999999999999999998 56667899999999999999999999999999887 778889999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT-YVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.|.++..+++|++|++.|.+++++-+...... ..+..+...|.+ ..-.+++.+|+.++++++++ +|..-
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~--v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce 537 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLII--VNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCE 537 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhcccccccc--ccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHH
Confidence 99999999999999999999999855421110 011112222222 22458999999999999988 45667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.++..||.+..++|+.++|+++|+++..+.+..
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 899999999999999999999999999887653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=151.89 Aligned_cols=219 Identities=11% Similarity=-0.014 Sum_probs=129.8
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
+...+|...+.+++.... +. .....+|..+...|++++|+..+++++.. .+. ...+..+|.++
T Consensus 490 ~~~~eAi~a~~~Al~~~P----d~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~al 552 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQP----DA----WQHRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTA 552 (987)
T ss_pred CCcHHHHHHHHHHHHhCC----ch----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHH
Confidence 455555555555553331 11 12444555556677777777777665432 111 12345666667
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+.+++++++. .++. ...+..++......|++++|+..++++++.. |. ..++.++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l-----~P~~---~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~L 615 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR-----GLGD---NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVAR 615 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHH
Confidence 7777777777777776654 1222 2333344555555577777777777776653 33 4566677
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
|.++...|++++|+..+++++.+ .|....++.++|.++...|++++|+..++++++.. |....+
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--------P~~~~a 679 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--------PDDPAL 679 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHH
Confidence 77777777777777777776665 12223456667777777777777777777776652 333566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
+.++|.++...|++++|+.++++++++.+
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66777777777777777777777766554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-16 Score=131.90 Aligned_cols=227 Identities=15% Similarity=0.032 Sum_probs=165.4
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
+..+.+.....+.+.... .+++..+..++.+|.++...|++++|+..|+++++. +|....++..+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~---~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRD---LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHcccc---CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHH
Confidence 334555555556554332 234456788999999999999999999999999987 677889999999999
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+..+++++++ . |....++.++|.++...|++++|+..++++++.. ++++.. .. .
T Consensus 109 ~~~g~~~~A~~~~~~Al~l-----~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~---~ 171 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLEL-----D---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-AL---W 171 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HH---H
Confidence 9999999999999999998 3 3345789999999999999999999999999874 333311 11 1
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
..+....+++++|+..+.++..... ++. + ..+.+....|+..++ ..+..+.+..+... ...+....+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~----~~~------~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea 238 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLD----KEQ------W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCET 238 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCC----ccc------c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHH
Confidence 2334567889999999987664311 111 1 134555567777654 24444432221110 002344789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+..+|.++...|++++|+.+|++++++.
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-16 Score=148.86 Aligned_cols=200 Identities=12% Similarity=0.044 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..+|.++...|++++|+.+++++++. .|.....+..++......|++++|+..++++++. .|
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P--- 607 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-----AP--- 607 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CC---
Confidence 4677888999999999999999999876 3444555556666666779999999999999987 33
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
. ...+.++|.++...|++++|+..+++++... |....++.++|.++...|++++|+..+++++++
T Consensus 608 ~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------ 672 (987)
T PRK09782 608 S-ANAYVARATIYRQRHNVPAAVSDLRAALELE--------PNNSNYQAALGYALWDSGDIAQSREMLERAHKG------ 672 (987)
T ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 2 5688999999999999999999999999884 666788999999999999999999999999886
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.|....++.++|.++...|++++|+.+++++++.. |..+.+....|.+.....+++.|.+.+++...+..
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 22334678899999999999999999999999874 45577888888999888889999888888877544
Q ss_pred h
Q 017109 365 K 365 (377)
Q Consensus 365 ~ 365 (377)
.
T Consensus 743 ~ 743 (987)
T PRK09782 743 D 743 (987)
T ss_pred c
Confidence 3
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=150.69 Aligned_cols=241 Identities=19% Similarity=0.169 Sum_probs=171.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchh-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHT-------SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV 164 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 164 (377)
....|++++|...+.+++........... ........+|..+...|++++|+..|+++++. +|..
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~ 384 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTD 384 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence 34578888888888888765542221110 01123345688899999999999999999987 5666
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH--------------------------------------
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI-------------------------------------- 206 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------------- 206 (377)
..++..+|.++...|++++|+.+|+++++.. |++...
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999762 221110
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-
Q 017109 207 -GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE- 284 (377)
Q Consensus 207 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 284 (377)
...+..+|.++...|++++|+..|+++++.. |....++..+|.++...|++++|+..++++++..+....
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD--------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 1223456777888999999999999999884 556678899999999999999999999988764221100
Q ss_pred --------------------------C---------------------------------------CCHHHHHHHHHHHH
Q 017109 285 --------------------------G---------------------------------------DSMTCIRRLRYLAQ 299 (377)
Q Consensus 285 --------------------------~---------------------------------------~~~~~~~~~~~la~ 299 (377)
. ..+.....+..+|.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 0 00001123456777
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
++...|++++|+..|+++++.. |....++..++.++...|++++|+..++++++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7788888888888888877652 33356666777777777777777777766554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-16 Score=151.56 Aligned_cols=194 Identities=21% Similarity=0.211 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..+|.++...|++++|+..|++++.. .|.. ..+..++.++...|++++|...++++++. .|++
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~~~~- 769 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKR--------APSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT-----HPND- 769 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC-
Confidence 3444444444455555555555444443 1111 33344455555555555555555554443 1121
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
..++..+|.++...|++++|+.+|+++++.. |....++.+++.++...|+ .+|+.+++++++..+
T Consensus 770 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~---- 834 (899)
T TIGR02917 770 --AVLRTALAELYLAQKDYDKAIKHYRTVVKKA--------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP---- 834 (899)
T ss_pred --HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC----
Confidence 3455555566666666666666666555542 3334455555666666665 556666665555411
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
+.+ ..+..+|.++...|++++|+.+++++++.. |....++..++.++...|++++|...+++++
T Consensus 835 -~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 -NIP---AILDTLGWLLVEKGEADRALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred -CCc---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 224455666666666666666666666542 1124555566666666666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=150.19 Aligned_cols=206 Identities=18% Similarity=0.189 Sum_probs=165.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh--
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR-- 205 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 205 (377)
.+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+.+++++++.. ++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~ 340 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRD 340 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchh
Confidence 4588899999999999999999987 67778899999999999999999999999999873 32221
Q ss_pred ---------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 206 ---------IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 206 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.......+|.++...|++++|+..|++++... |....++..+|.++...|++++|+..|++++
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11234566889999999999999999999984 5556788999999999999999999999999
Q ss_pred HHHHHcCCC----------CCH------------------------HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 277 RILEENGEG----------DSM------------------------TCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 277 ~~~~~~~~~----------~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
++.+..... ..+ .....+..+|.++...|++++|+..|+++++..
T Consensus 413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~- 491 (1157)
T PRK11447 413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD- 491 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 763221000 000 001123456778888999999999999999873
Q ss_pred hccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 323 SSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|....++..+|.+|...|++++|...++++++.
T Consensus 492 -------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 492 -------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444678899999999999999999999999874
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=149.03 Aligned_cols=202 Identities=22% Similarity=0.227 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
....++..+|.++...|++++|+..|+++++. .|....++..++.++...|++++|...+++++.. .
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~ 529 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-----D 529 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 34467788888888888888888888888875 4555667788888888888888888888888775 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
|+ ...++..++.++...|++++|...+++++... |.....+..++.++...|++++|+..++++++..
T Consensus 530 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 530 PK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred cC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 22 24567777777777788888877777776552 3334455666677777777777777766665431
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
+.....+..+|.++...|++++|+..|+++++.. |....++..++.++...|++++|...+++++
T Consensus 598 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 598 -------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1122345666777777777777777777766542 2224556666777777777777777776666
Q ss_pred HH
Q 017109 361 EA 362 (377)
Q Consensus 361 ~~ 362 (377)
+.
T Consensus 663 ~~ 664 (899)
T TIGR02917 663 EL 664 (899)
T ss_pred hc
Confidence 53
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-16 Score=139.98 Aligned_cols=197 Identities=17% Similarity=0.100 Sum_probs=157.8
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---------CHhHHHHHHHHHHH
Q 017109 126 FTDSGRDYFLQ---GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---------AFDKAEPLYLEAIK 193 (377)
Q Consensus 126 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~ 193 (377)
++..|...... +++++|+..+++++++ +|....++..+|.++...+ ++++|...++++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455544433 4578999999999987 7778888999998876543 48899999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
+ .|+ ...++..+|.++...|++++|+..+++++++. |....++..+|.++...|++++|+..++
T Consensus 333 l-----dP~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 333 L-----DHN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred c-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7 333 35788999999999999999999999999984 6667889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 274 ESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
+++++.+ ..+ .....++.++...|++++|+..+++++... .|.....+..+|.++...|++++|.
T Consensus 397 ~Al~l~P-----~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 397 ECLKLDP-----TRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHHhcCC-----CCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999722 222 223345556777899999999999987652 1233567888999999999999999
Q ss_pred HHHHHHHH
Q 017109 354 ELFERCLE 361 (377)
Q Consensus 354 ~~~~~al~ 361 (377)
..+++...
T Consensus 462 ~~~~~~~~ 469 (553)
T PRK12370 462 KLTKEIST 469 (553)
T ss_pred HHHHHhhh
Confidence 99988655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-15 Score=120.27 Aligned_cols=172 Identities=22% Similarity=0.178 Sum_probs=146.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++..
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--- 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 4456788999999999999999999999999876 23335788899999999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+....++.++|.++...|++++|+..+++++... ..+.....+..+|.++...|++++|...+.+++..
T Consensus 96 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 96 -----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445688899999999999999999999998742 12233455778999999999999999999999886
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. +.....+..++.++...|++++|..++++++..
T Consensus 165 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 D--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred C--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 223567889999999999999999999999886
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=121.33 Aligned_cols=229 Identities=13% Similarity=0.061 Sum_probs=187.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|-+.+|.......+...+ ..+.+..++.+|....+...|+..+.+.++. .|.....+..++.+
T Consensus 236 Lgm~r~AekqlqssL~q~~--------~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQFP--------HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARI 299 (478)
T ss_pred hcChhhhHHHHHHHhhcCC--------chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHH
Confidence 3444555555555554332 3467788899999999999999999988876 67778888899999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
+..++++++|.++|+.+++. ++....+...+|..|+..++++-|+.+|++.+.+- ......+.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--------~~speLf~N 363 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--------AQSPELFCN 363 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc--------CCChHHHhh
Confidence 99999999999999999987 33334566678888889999999999999998884 344678899
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVI 334 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 334 (377)
+|.++...+++|-++..+++++....+ ....+.+|+++|.+....|++..|..+|+-++.. +++..+
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~e 430 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGE 430 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHH
Confidence 999999999999999999999987553 3356678999999999999999999999988854 345589
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 335 AAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 335 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
++.+||.+-.+.|+.++|..++..+-...+.+..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 9999999999999999999999999887666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-14 Score=116.14 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=149.3
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+.....++.+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--- 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--- 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence 345567889999999999999999999999998763 345566778999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--------------HHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQ--------RKLEDACTYYERALKIKGRVLGHGNIDYADT--------------MYHL 255 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~l 255 (377)
.|+++....+++.+|.++... |++++|+..+++++... ++++....+ ...+
T Consensus 100 --~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 100 --HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred --CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667889999999876 88999999999998774 222222211 2467
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
|.++...|++.+|+..++++++..+ +.+....++..+|.++...|++++|..+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYP-----DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8899999999999999999998733 3456677899999999999999999998876543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=131.06 Aligned_cols=245 Identities=16% Similarity=0.156 Sum_probs=175.2
Q ss_pred hhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
...+..|+|..+..+...++.... ..+..++.++++|+.|..+|+|++|..+|.++++. ++....-.+.
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-------~~d~~~l~~~ 346 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTE----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-------DNDNFVLPLV 346 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-------CCCCcccccc
Confidence 334556777777777666665442 44556677777888888888888888887777765 1112355667
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR----KLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+|..|...|+++.|..+|++.++. .|....+...+|.+|...+ ..++|..+..++++..
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------- 410 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------- 410 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--------
Confidence 7777788888888888877777776 2223456666777776664 4456666666666554
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
+....++..++.++....-+ .++.+|..|+.+....... .-...++++|..++..|++.+|...+..++..+....
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 66678899999988765544 4599999999888877644 3345689999999999999999999999999855333
Q ss_pred CCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 326 GWNS--LDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 326 ~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+. .......+++|.++...++++.|.+.|+..+...+.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 2222 122456889999999999999999999998875443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-14 Score=113.04 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=186.0
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC--HhHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD--PHVASACNNLA 172 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la 172 (377)
..+.++|...+.+.+. .+|.+.++...+|..|.+.|..+.|+...+..++. ++- .....+...||
T Consensus 48 s~Q~dKAvdlF~e~l~-------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~lAl~qL~ 114 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ-------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRLLALQQLG 114 (389)
T ss_pred hcCcchHHHHHHHHHh-------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHHHHHHHHH
Confidence 4455667777776664 56678899999999999999999999998877764 332 34577889999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.-|+..|-++.|+..|....+. ......+...+..+|....++++|++..++...+-. .+....++..+
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~---q~~~~eIAqfy 183 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG---QTYRVEIAQFY 183 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC---ccchhHHHHHH
Confidence 9999999999999999988764 223346788899999999999999999888776642 23345678889
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++..+....+.+.|...+.++++. ++....+-..+|.++...|+++.|++.++.+++.. +...
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-------~~yl 248 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-------PEYL 248 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-------hHHH
Confidence 99999999999999999999999985 34455566789999999999999999999988752 2335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
..+...|..+|...|+.++....+.++.+..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7888899999999999999999999887743
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=116.12 Aligned_cols=186 Identities=15% Similarity=0.036 Sum_probs=149.7
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+.....++.+|..+...|++++|+..+++++.. .|+++....++..+|.++...|++++|+..++++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 4567889999999999999999999999999887 45566666789999999999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHc--------CChhhHHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQ--------GKENDSEALFLESIRILEENGEGDSM---------TCIRRLRYLAQTYVK 303 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~~~la~~~~~ 303 (377)
++++....+++.+|.++... |++++|+..+++++...+........ ........+|.++..
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566888999999876 78999999999998764332100000 000112467899999
Q ss_pred hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 304 ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.|++.+|+..++++++.. ++++....++..+|.++...|++++|..+++....
T Consensus 179 ~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 179 RGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred cCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999874 23455688999999999999999999998877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-15 Score=124.80 Aligned_cols=231 Identities=15% Similarity=0.088 Sum_probs=183.1
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+..+|.-.+..++. .+|..+++|..||.+....++-..|+..+++|+++ +|....++..||
T Consensus 296 m~nG~L~~A~LafEAAVk-------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLA 360 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVK-------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALA 360 (579)
T ss_pred HhcCCchHHHHHHHHHHh-------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHH
Confidence 446666666666655553 56788999999999999999999999999999998 899999999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHH-----------hcCC----C--------------------chhHHHHHHHHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQE-----------SFGP----E--------------------DIRIGVAFHNLGQFY 217 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~--------------------~~~~~~~~~~la~~~ 217 (377)
..|...|.-.+|..++.+-+..-.+ ..+. . ......+...||.+|
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9999999999999999887654200 0000 0 002246788899999
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|+|++|+++|+.|+... |.....|+.||-.+....+..+|+..|++|+++ .|..+++.++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~yVR~RyNl 504 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------QPGYVRVRYNL 504 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCCeeeeehhh
Confidence 99999999999999999884 888899999999999999999999999999997 45667789999
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh--HHHHHHHHHHHHHHcCCHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLD--TVIAAEGLALTLQSTGSLMEAQE 354 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~ 354 (377)
|..|..+|.|++|.++|-.|+.+.++..+..... .-.++..|=.++...++.+-+..
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999999987744332221 12344444455566666664433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-13 Score=129.94 Aligned_cols=264 Identities=13% Similarity=0.068 Sum_probs=204.4
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+++++.....+++..... .+......+...+|.++...|++++|...+++++...... .+......++..+|
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la 538 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPL--TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQS 538 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHH
Confidence 4578999999888888764221 1223345567889999999999999999999999987765 23344566788999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|..++++++.......++..+.....+..+|.++...|++++|...+.+++....... ......++
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~ 615 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCL 615 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHH
Confidence 999999999999999999999988764433343455577889999999999999999999999875332 13345677
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC-------------------------------------CCHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEG-------------------------------------DSMTCIRRLR 295 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------------~~~~~~~~~~ 295 (377)
..++.++...|++++|...+.++..+....... ..........
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 789999999999999999999987764432100 0000111235
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++.++...|++++|...+++++...+.... ....+.++..+|.++...|+.++|...+.+++++...
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 6888999999999999999999998765433 2355788899999999999999999999999997654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=124.23 Aligned_cols=210 Identities=18% Similarity=0.156 Sum_probs=181.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 206 (377)
+..|..+++.|+..+|.-.|+.++.. +|..+++|..||.+....++-..|+..+++++++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 46799999999999999999999976 8999999999999999999999999999999998 4445
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----------hcCC----C------------------Ch--hHHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGR-----------VLGH----G------------------NI--DYADT 251 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~------------------~~--~~~~~ 251 (377)
..++..||..|...|.-.+|..++.+-+....+ ..+. . .+ ..+.+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 689999999999999999999999987654310 0000 0 11 33567
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
...||.+|...|+|++|+.+|+.|+.. .|.....|+.||-.+....+..+|+..|.+|+++. |.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~ 496 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PG 496 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CC
Confidence 788999999999999999999999985 45566789999999999999999999999999984 66
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+++.++||..+..+|.|++|.++|-.|+.+.++-.+
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 6999999999999999999999999999999887443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-14 Score=125.92 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.++..++..++..|+|..+..+...++... ...+..+..++.+|.+|..+|+|++|..+|.+++.. .+++
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~ 340 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDN 340 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCC
Confidence 678899999999999999999999998764 235677889999999999999999999999999986 2333
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----ChhhHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG----KENDSEALFLESIRIL 279 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~ 279 (377)
....+..+|.+|...|+++.|..+|++.+... |....++..||.+|...+ ..+.|..++.++++..
T Consensus 341 --~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 341 --FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred --ccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 35678899999999999999999999999886 677788888999998876 5577777777777652
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
+....++..++.++.. ++...++..|..|+.+....... .| ++.+.++|..+...|++++|...+..+
T Consensus 411 --------~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip--~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 411 --------PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ-IP--PEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred --------cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC-CC--HHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 4456678899998876 45556699999999998887666 55 889999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 017109 360 LEARKKLMPQ 369 (377)
Q Consensus 360 l~~~~~~~~~ 369 (377)
+.......+.
T Consensus 479 ~~~~~~~~n~ 488 (1018)
T KOG2002|consen 479 LGKLLEVANK 488 (1018)
T ss_pred hhhhhhhcCc
Confidence 9985544433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=123.46 Aligned_cols=200 Identities=20% Similarity=0.182 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..+..++.+ ...+++++|..+++++.+.. .....+..+..++...++++++...++++... +..
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~ 142 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAA 142 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T--
T ss_pred ccccccccc-cccccccccccccccccccc---------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCC
Confidence 445556666 68899999999998887641 12344556677889999999999999997753 112
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+.....+..+|.++...|++++|+..++++++.. |....+...++.++...|+++++.+.+....+..+..
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~- 213 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD- 213 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-
Confidence 3346788999999999999999999999999996 6667788899999999999999888888877664322
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+ ..+..+|.++...|++++|+.++++++.. +|.....+..+|.++...|+.++|..++++++...
T Consensus 214 ----~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 214 ----P---DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ----C---CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred ----H---HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence 1 23567899999999999999999999876 34557888999999999999999999999988753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-15 Score=122.53 Aligned_cols=212 Identities=20% Similarity=0.218 Sum_probs=174.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
...+.++...|..++-.|++-.|.+.+..++.+ ++.....|..+|.+|....+..+....|.+|.++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----- 389 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL----- 389 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----
Confidence 446888999999999999999999999999987 5666666999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+|.+ ..+|+..|.+++-.+++++|+.-|++++.+. |..+.++..++.+.+++++++++...|+++.+.+
T Consensus 390 dp~n---~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF 458 (606)
T KOG0547|consen 390 DPEN---PDVYYHRGQMRFLLQQYEEAIADFQKAISLD--------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF 458 (606)
T ss_pred CCCC---CchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444 4789999999999999999999999999995 8888999999999999999999999999999875
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT-LQSTGSLMEAQELFER 358 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 358 (377)
+. ...++...|.++..+++++.|++.|+.++++-....+.... +..+...|.+ ..-.+++..|.+++++
T Consensus 459 P~--------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~--~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 459 PN--------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN--AAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred CC--------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc--chhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 43 34567889999999999999999999999986442211111 1122222222 2234899999999999
Q ss_pred HHHHHHh
Q 017109 359 CLEARKK 365 (377)
Q Consensus 359 al~~~~~ 365 (377)
++++.++
T Consensus 529 A~e~Dpk 535 (606)
T KOG0547|consen 529 AIELDPK 535 (606)
T ss_pred HHccCch
Confidence 9986443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-13 Score=109.75 Aligned_cols=262 Identities=17% Similarity=0.078 Sum_probs=212.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
.+...+++.+...+.+.+.... +.......+..+..+....|.|++++.+.--.++.+.+. ++......++.++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~----~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLS----DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNL 89 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHH----HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4456677777777777776554 455567788888999999999999998888777777666 5566778999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+..+....++.+++.+....+.+-....+ ..-......+|..+..++.+++++++|++|+.+.....++ .....+
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~--~LElqv 164 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA--MLELQV 164 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc--eeeeeh
Confidence 99999999999999998887765211111 1224566779999999999999999999999998655333 444678
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDS--MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
+..||.++....++++|.-+..++.++....+.++. .....+++.++..+..+|+...|.++.+++.++.-..++ .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd--r 242 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD--R 242 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC--h
Confidence 899999999999999999999999999888764443 345567889999999999999999999999999876643 4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 330 LDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+..+.++..+|++|...|+.+.|..-|+++..+...+
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 6668899999999999999999999999998876653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=111.35 Aligned_cols=263 Identities=17% Similarity=0.136 Sum_probs=211.9
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC-HhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD-PHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l 171 (377)
...|.|+++.......|....... +......++.++++.+...-++.+++.+-...+.+ .|.+. ..-..+...+
T Consensus 54 s~~g~y~~mL~~a~sqi~~a~~~~-ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l----pgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 54 SEMGRYKEMLKFAVSQIDTARELE-DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL----PGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC----CCCCcccccchhhhhH
Confidence 346888888888877776665444 44556788999999999999999999888877765 11111 1224667779
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC--hhHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN--IDYA 249 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~ 249 (377)
|.++..++.|++++++|++++++..... |......++..+|..+....++++|.-+..+|.++.....-.+- ....
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 9999999999999999999999987653 34444678999999999999999999999999999876542221 2345
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.+++.++..+..+|+..+|.++.+++.++.-..+ +.+........+|.+|...|+.+.|..-|+++.......++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr-- 282 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR-- 282 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh--
Confidence 6788999999999999999999999999998887 788888999999999999999999999999999988776543
Q ss_pred hhHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHhh
Q 017109 330 LDTVIAAEGLALTLQSTGSLME-----AQELFERCLEARKKL 366 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~ 366 (377)
...+.++...++++....-..+ |++.-++++++..++
T Consensus 283 mgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 283 MGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 3347788888888876655555 899999999887774
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-13 Score=128.18 Aligned_cols=231 Identities=11% Similarity=-0.023 Sum_probs=159.2
Q ss_pred hhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
..+.-.|+.++|...+.+... ..|..+.++..+|..+...|++++|+..++++++. .|....++.
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~-------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~ 87 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRV-------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQR 87 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 334456777777766665543 12344567888999999999999999999999887 566677778
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.++.++...|++++|+..++++++. .|++ .. +..+|.++...|++++|+..++++++.. |...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~ 150 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSG-----APDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQ 150 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCH
Confidence 8999999999999999999999887 3333 34 7788999999999999999999998884 5556
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHH----------------------------------------------HHHHHHHcC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLE----------------------------------------------SIRILEENG 283 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~----------------------------------------------al~~~~~~~ 283 (377)
.++..++.++...|..++|+..+++ +++..+..
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~- 229 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN- 229 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC-
Confidence 6666778777777777766655542 11111111
Q ss_pred CCCCHHHHHHHHH-HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRY-LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 284 ~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+...+....+... ++ .+...|++++|+..|+++++.. +..|.. +...++.+|...|++++|+..|+++++
T Consensus 230 p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~-----~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 230 PDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEG-----QIIPPW--AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred CccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccC-----CCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 0111222222222 33 3356788888888888876541 122322 333357888888888888888888775
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-13 Score=128.93 Aligned_cols=217 Identities=12% Similarity=-0.044 Sum_probs=163.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.+....+.......+...|++++|+..|+++++.. +..|..+.. .+|.+|...|++++|+.+|++++..
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~-----~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~---- 301 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEG-----QIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH---- 301 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC-----CCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc----
Confidence 34444454443334467799999999999988651 112444333 3688999999999999999998864
Q ss_pred cCCCc-hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh-------cCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 199 FGPED-IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV-------LGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 199 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
.+.. .........++.++...|++++|+..++++....... ....++....++..++.++...|++++|+.
T Consensus 302 -~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 302 -PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred -CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222 1113456777888899999999999999988763110 000011235677889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 350 (377)
.+++++... |....++..+|.++...|++++|+..+++++.+. |+....+..+|.++...|+++
T Consensus 381 ~l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--------Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 381 RARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--------PRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCCHH
Confidence 999998862 2224578899999999999999999999999873 555678899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017109 351 EAQELFERCLEAR 363 (377)
Q Consensus 351 ~A~~~~~~al~~~ 363 (377)
+|...++++++..
T Consensus 445 ~A~~~~~~ll~~~ 457 (765)
T PRK10049 445 QMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999853
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=117.82 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=164.4
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|.+.+.++-... +..+.+|...|..+...|..++|+..|..|-++. +....-...+|.
T Consensus 324 ~i~k~seARry~SKat~lD-------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--------~G~hlP~LYlgm 388 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--------PGCHLPSLYLGM 388 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--------cCCcchHHHHHH
Confidence 4688888888887765443 3455789999999999999999999999999884 333344567899
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
-|...+++.-|..+|.+|+.+ .|.+| .++..+|.+.+..+.|.+|..+|+.++...+..... .+.....+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai-----~P~Dp---lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~ 459 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAI-----APSDP---LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLN 459 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhc-----CCCcc---hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHH
Confidence 999999999999999999998 44554 688999999999999999999999999776655443 234566789
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+||.++.+.+++++|+.++++++.+. +....++..+|.+|..+|+++.|+++|.+++.+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999999999999999873 3344668899999999999999999999999874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=116.04 Aligned_cols=200 Identities=14% Similarity=0.074 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
-...++|.+|...|-+.+|.+.++.+++. ....+.+..|+.+|....++..|+..+.+.++. .
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------f 286 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------F 286 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------C
Confidence 34467999999999999999999999975 345678889999999999999999999999886 3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
|........++.++..++++++|.++|+.+++.. +....+...+|.-|+..++++-|+.+|++.+++-
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG---- 354 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH--------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG---- 354 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--------CccceeeeeeeeccccCCChHHHHHHHHHHHHhc----
Confidence 4446678899999999999999999999999873 6667777888999999999999999999999972
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..+ ...+.++|.|++..++++-++..+++++...... ...+++|+++|.+....|++..|..+|+-++.
T Consensus 355 -~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~-----~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 355 -AQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP-----GQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred -CCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc-----chhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 223 3457899999999999999999999999886432 23488999999999999999999999998886
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-13 Score=106.56 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=187.5
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
.+.|+.+.|......-+... .+ .......++..+|.-|+..|-++.|+..|....+. ......++..|-
T Consensus 80 RsRGEvDRAIRiHQ~L~~sp-dl--T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl 148 (389)
T COG2956 80 RSRGEVDRAIRIHQTLLESP-DL--TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLL 148 (389)
T ss_pred HhcchHHHHHHHHHHHhcCC-CC--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHH
Confidence 34577666666655433222 12 23346788999999999999999999999988754 345567889999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.+|....++++|++..++..++-.+ +....++..|..++..+....+.+.|...+.+|++.. +....+-
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--------~~cvRAs 217 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--------KKCVRAS 217 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--------ccceehh
Confidence 9999999999999999988887332 2356778899999999999999999999999999884 6667888
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..+|.++...|+|+.|++.++.+++. ++.....+...|..+|...|+.++.+..+.++.+....
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--------- 281 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--------- 281 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC---------
Confidence 89999999999999999999999886 66677888899999999999999999999998876422
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+...++++-....-.+.|..++.+-+...++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 344555667777777777788777776664443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=113.39 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+...|..|...|++++|...|.++.+...+.. +....+..+...+.++... ++++|+.+++++++++...+.
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 4577788889999999999999999999999988752 4556677888888887666 999999999999999876543
Q ss_pred CCChhHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+ ...+.++..+|.+|... |++++|+++|+++.++++..+ .......++..+|.++...|+|++|++.|++.....
T Consensus 110 ~--~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 110 F--SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp H--HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred H--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3 55688999999999999 999999999999999999876 455667788899999999999999999999987754
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..... ........+...+.++...|+...|...+++.....+.
T Consensus 186 l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 186 LENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp CCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred hcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 22211 11233456677888999999999999999887765443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-13 Score=110.03 Aligned_cols=230 Identities=15% Similarity=0.107 Sum_probs=171.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+....+..+...|..|...|++++|...|.++.+...+. .+....+.++...+.++... ++++|+.+++++++++..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 555678889999999999999999999999999998875 44556788888888888776 999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.. .....+.++..+|.+|... |++++|+++|++|+++++.... ......++..+|.++...|+|++|++.|++..
T Consensus 107 ~G--~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 107 AG--RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp CT---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cC--cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 63 4556688999999999999 9999999999999999976542 24557788999999999999999999999987
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH--cCCHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS--TGSLMEAQE 354 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~ 354 (377)
........ .....-..+...+.+++..|++..|...+++........ .+..-......|-..+.. ...+++|+.
T Consensus 183 ~~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 183 KKCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HTCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 75332221 123444556778889999999999988888876553222 223334555666666553 345566655
Q ss_pred HHHH
Q 017109 355 LFER 358 (377)
Q Consensus 355 ~~~~ 358 (377)
-|..
T Consensus 259 ~~d~ 262 (282)
T PF14938_consen 259 EYDS 262 (282)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 5544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=121.89 Aligned_cols=229 Identities=15% Similarity=0.068 Sum_probs=96.8
Q ss_pred hhhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH
Q 017109 89 SIESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168 (377)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 168 (377)
.......|++++|.....+.+... .+|.....+..+|.+....+++++|+..|++.+.. ++.....+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~~~ 81 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc--------cccccccc
Confidence 334455677777776665443322 12334477788899999999999999999999876 44455667
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
..++.+ ...+++++|..+++++.+.. .++ ..+.....++...++++++...++++.... ..+..
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ 145 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDS 145 (280)
T ss_dssp ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-
T ss_pred cccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCC
Confidence 777777 68999999999998887642 122 345566778899999999999999977432 12455
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
...+..+|.++...|+.++|+..++++++..+ ....+...++.++...|+++++.+.+.........
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~----- 212 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDP--------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD----- 212 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-----
Confidence 77889999999999999999999999999832 22345677888999999999988888877766422
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
....+..+|.++...|++++|+.++++++..
T Consensus 213 ---~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 213 ---DPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp ---SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccccccccccccccccccc
Confidence 2345678899999999999999999999874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=114.72 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.++.+.|.+.+..|++++|.+.|++++.- +..-..+++++|..+..+|+.++|+++|-+.-.+....
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---- 557 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---- 557 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh----
Confidence 345566677777788888888888888753 56677888888888888888888888888777664432
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
+.++..++.+|..+.+..+|++++.++..+. |..+.++..||.+|-+.|+-.+|.+++-.....++
T Consensus 558 ----~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyryfp-- 623 (840)
T KOG2003|consen 558 ----AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-- 623 (840)
T ss_pred ----HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC--
Confidence 5677888888888888888888888877664 55566777788888888888777777766555422
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
....+...||..|....-+++|+.+++++--+. |....-...++.|+.+.|+|.+|...|+..-.
T Consensus 624 ------~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 624 ------CNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred ------cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 223344567777777777777777777765442 33355556677888888888888887776544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-13 Score=120.27 Aligned_cols=229 Identities=19% Similarity=0.160 Sum_probs=160.4
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+.|... |....+|+.+|.+|..+|+.+++....-.|-.+ .|.....|..++.
T Consensus 151 arg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~lad 215 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLAD 215 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHH
Confidence 3699999999999988654 344577888888888888888888877777655 4444577777788
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG--------------- 238 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------- 238 (377)
....+|++++|.-+|.+|++. . |.........+.+|.++|+...|...+.+.+....
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~-----~---p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQA-----N---PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhc-----C---CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 888888888888888888775 1 11123334444444444444444444433332111
Q ss_pred ------------------------H------------------------------hc-----------------------
Q 017109 239 ------------------------R------------------------------VL----------------------- 241 (377)
Q Consensus 239 ------------------------~------------------------------~~----------------------- 241 (377)
. ..
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 0 00
Q ss_pred ---------------------------------------CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 242 ---------------------------------------GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 242 ---------------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
..........+..++..+...|++.+|+.++..+...
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~---- 443 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR---- 443 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC----
Confidence 0001123445677888888999999999998887653
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
.......+|..+|.||..+|.+++|+++|++++... |....+...|+.++..+|++++|.+.++...
T Consensus 444 ---~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 444 ---EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ---ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 222336678999999999999999999999999874 5558899999999999999998877776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-13 Score=110.40 Aligned_cols=192 Identities=15% Similarity=0.032 Sum_probs=140.4
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....+++.+|.++...|++++|+..|++++++ +|....++.++
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~l 138 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNR 138 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 345688888888888777643 345689999999999999999999999999988 77788899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..++++++. .|+++.. ..+ ..+....+++++|+..+.++.... . +..
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~----~---~~~--- 199 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKL----D---KEQ--- 199 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhC----C---ccc---
Confidence 99999999999999999999987 4555421 111 223456789999999998766432 1 111
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+ ..+.+....|+..++ ..++.+.+..+.. ....+....++.++|.++...|++++|+.+|+++++.
T Consensus 200 ~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~-~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 200 W-GWNIVEFYLGKISEE-TLMERLKAGATDN-TELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred c-HHHHHHHHccCCCHH-HHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 134555667777654 3444443321110 0012345678999999999999999999999999976
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-12 Score=103.35 Aligned_cols=217 Identities=15% Similarity=0.113 Sum_probs=177.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|..+.-...+|..++..|++..|+..|..|++. +|....+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---- 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---- 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----
Confidence 3445566788999999999999999999999986 8999999999999999999999999999999997
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHcCChhhHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG-------NIDYADTMYHLATVLYLQGKENDSEAL 271 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (377)
.|+...+....|.++.++|++++|+.-|+..++......... .......+......+...|+...|+++
T Consensus 102 ----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 102 ----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred ----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 566678899999999999999999999999887632110000 001112233445556678999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHH
Q 017109 272 FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLME 351 (377)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 351 (377)
....+++ .+..+..+...+.+|...|++..|+.-++.+-++. .+..+.++.++.+++..|+.+.
T Consensus 178 i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 178 ITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHH
Confidence 9999986 34555667788999999999999999999988774 2337889999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCC
Q 017109 352 AQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 352 A~~~~~~al~~~~~~~~~~~~ 372 (377)
++...++++. ++++|.
T Consensus 242 sL~~iRECLK-----ldpdHK 257 (504)
T KOG0624|consen 242 SLKEIRECLK-----LDPDHK 257 (504)
T ss_pred HHHHHHHHHc-----cCcchh
Confidence 9999999998 556653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-12 Score=106.54 Aligned_cols=210 Identities=15% Similarity=0.103 Sum_probs=175.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|++++|...+.+++.. +..-.++++++|..+...|+.++|+++|-+.-.+. ...+.++..+
T Consensus 500 ~f~ngd~dka~~~ykeal~n-------dasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~evl~qi 564 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNN-------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQI 564 (840)
T ss_pred eeecCcHHHHHHHHHHHHcC-------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHH
Confidence 34478899999999988854 34456899999999999999999999999887773 4568899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+.+|..+.+..+|++++.++..+ -|++| .++..+|.+|-+.|+-.+|.+++-.....+ |.....
T Consensus 565 aniye~led~aqaie~~~q~~sl-----ip~dp---~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~ 628 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-----IPNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIET 628 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-----CCCCH---HHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHH
Confidence 99999999999999999999887 34454 678899999999999999999998887776 666677
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
.-.||..|....-+++|+.+++++--+ .|........++.|+.+.|+|.+|.+.|+..-..+ |.
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--------pe 692 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--------PE 692 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--------cc
Confidence 778899999999999999999998665 33444556678999999999999999999876654 55
Q ss_pred HHHHHHHHHHHHHHcCC
Q 017109 332 TVIAAEGLALTLQSTGS 348 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~ 348 (377)
...++..|.++.-..|-
T Consensus 693 dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred chHHHHHHHHHhccccc
Confidence 57888888888877764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-12 Score=111.99 Aligned_cols=213 Identities=14% Similarity=0.039 Sum_probs=156.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|+....+..+|.++...|+.+.+...+.++...... +..........+.++...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD---- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence 3556778889999999999999998888887766432 2234455667788999999999999999999886
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.|++. .++.. +..+...|++..+.....+++.. ..+.++........+|.++..+|++++|+..+++++++
T Consensus 73 -~P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 73 -YPRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred -CCCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33333 33333 55566666555555555555443 23455777778888999999999999999999999987
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+. ....+..+|.++...|++++|+.++++++..... ........+..++.++...|++++|...+++
T Consensus 144 ~p~--------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 144 NPD--------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred CCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 322 2345778899999999999999999998876432 1112245677899999999999999999998
Q ss_pred HHH
Q 017109 359 CLE 361 (377)
Q Consensus 359 al~ 361 (377)
++.
T Consensus 212 ~~~ 214 (355)
T cd05804 212 HIA 214 (355)
T ss_pred Hhc
Confidence 854
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-12 Score=110.11 Aligned_cols=232 Identities=13% Similarity=0.009 Sum_probs=169.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|+++.+.....++.+..+ +.. .......+.++...|++++|+..+++..+. .|....++..+
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~----~~~--~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll 193 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELAD----NDQ--LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLA 193 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC----cch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Confidence 3568888888888888764332 211 122234488999999999999999999876 67778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHH-------------------HHh---------------cCCCchhHHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKIL-------------------QES---------------FGPEDIRIGVAFHNLGQFY 217 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~-------------------~~~---------------~~~~~~~~~~~~~~la~~~ 217 (377)
+.+|...|++++|.+.+.+..+.. ... .....+....+...++..+
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence 999999999999997776665320 000 0001122345667788899
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|+.++|...++++++. +.++... ...+. ...++++++++.+++.++. +|.....+..+
T Consensus 274 ~~~g~~~~A~~~L~~~l~~------~~~~~l~---~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~l 334 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR------QYDERLV---LLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTL 334 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc------CCCHHHH---HHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHH
Confidence 9999999999999888773 1123221 22222 2448888998888887764 33344567789
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|.++...|++++|.++|+++++.. |+ ...+..++.++...|+.++|..+|++++.+..+
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~--------P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQR--------PD-AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999872 32 345668999999999999999999999986543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-11 Score=115.64 Aligned_cols=264 Identities=14% Similarity=0.035 Sum_probs=195.5
Q ss_pred cCCChhhhhhhhhhhhccccccc--cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVS--NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
..|+++++.....++.......+ .+......+...+|.++...|++++|...+++++..... .+......+...+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~l 497 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVL 497 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHH
Confidence 46777777777766544332211 111224556666889999999999999999999875211 1222345677889
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|...+++++...+... .......++..+|.++...|++++|...+++++...........+.....
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 9999999999999999999999877652 23334567889999999999999999999999999877654433444555
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC---
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN--- 328 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 328 (377)
+..+|.++...|++++|...+.+++.+..... .......+..+|.++...|++++|...+.++..+........
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 67889999999999999999999999877543 223455677899999999999999999999877643321000
Q ss_pred ----------------------------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 329 ----------------------------------SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 329 ----------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..........++.++...|++++|...+++++...+.
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0001112457888999999999999999999987654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-11 Score=106.26 Aligned_cols=242 Identities=15% Similarity=0.042 Sum_probs=162.6
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|+++.+.....++.+... +.. ..+....+.++...|++++|...+++.++. .|....++..+
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p----~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll 193 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAG----NDN--ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLA 193 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC----cCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 3446777777777777653221 111 123334588888889999999888888876 56667788899
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHH----------------------HH---------hc--CC-CchhHHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKIL----------------------QE---------SF--GP-EDIRIGVAFHNLGQFY 217 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~----------------------~~---------~~--~~-~~~~~~~~~~~la~~~ 217 (377)
+.++...|++++|.+.+.+..+.. .. .. .| ..+.....+..++..+
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 999999999998888877766420 00 00 00 0012346677788888
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|++++|.+.++++++.. +++...... ..........++.+.+++.++++++. .++++. ......+
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~-~~ll~sL 341 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPK-CCINRAL 341 (409)
T ss_pred HHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChh-HHHHHHH
Confidence 88999999999999888864 222211101 12222333456777787777777764 223343 3567789
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
|.++...|++++|.++++++..... .|+ ...+..+|.++...|+.++|.+++++++...-.+
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~------~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKE------QLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999995433321 122 2335589999999999999999999998876553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-11 Score=104.96 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+.-...+|.......++..|++.|..++++ + .....+.+.+.+|...|.+.+.+.....+++...... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 4556778999999999999999999999998 4 5566778899999999999999999999888654431 1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--h----------------cCCCChhHHHHHHHHHHHHHHcC
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR--V----------------LGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~----------------~~~~~~~~~~~~~~la~~~~~~g 263 (377)
+...++.+...+|..|..+++++.|+.+|++++.-.+. . ..--.|....--..-|..++..|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 23345666777888999999999999999998865432 0 00012333444556689999999
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHH
Q 017109 264 KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTL 343 (377)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 343 (377)
+|..|+..|.++++. .|.....|.+.|.+|..+|.+..|+...+.++++ +|.....|..-|.++
T Consensus 373 dy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAAL 436 (539)
T ss_pred CHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHH
Confidence 999999999999885 3566778999999999999999999999999988 466789999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 017109 344 QSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 344 ~~~g~~~~A~~~~~~al~~~ 363 (377)
..+.+|++|.+.|.++++..
T Consensus 437 ~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999854
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-11 Score=111.81 Aligned_cols=168 Identities=13% Similarity=0.003 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
++.++-.+....|....+...+-+++...+. .+....++..||.+....|++++|..+++.++++ .|
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~P 117 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FP 117 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CC
Confidence 3444445556667777777777777777654 4666889999999999999999999999999998 44
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
....+..+++.++.+.+++++|+..+++++... |+...+++.+|.++...|++++|+.+|++++..
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------ 183 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------SSSAREILLEAKSWDEIGQSEQADACFERLSRQ------ 183 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 446889999999999999999999999999885 777889999999999999999999999999872
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
++....++..+|.++...|+.++|...|+++++..
T Consensus 184 --~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 --HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 33445668889999999999999999999999875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=101.24 Aligned_cols=236 Identities=15% Similarity=0.081 Sum_probs=162.3
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
.+.+|........+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 107 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 107 APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 3466777788888999999999999999999999987 55667788999999999999999999999998863
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCChhhHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT--MYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~ 273 (377)
.. +.......+..+|.++...|++++|+..+++++... +........ ...+...+...|....+..+ +
T Consensus 179 ~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~ 248 (355)
T cd05804 179 DC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-E 248 (355)
T ss_pred CC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-H
Confidence 21 122234567789999999999999999999985432 101111111 11223334444543333333 3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc-CCCChhHHHHHHHHHHHHHHcCCHHHH
Q 017109 274 ESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK-GWNSLDTVIAAEGLALTLQSTGSLMEA 352 (377)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 352 (377)
.+........ +. ..........+.++...|+.++|...++......+... .......+......+.++...|++++|
T Consensus 249 ~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 249 DLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 3332222211 11 11122223578888899999999999998887765510 111223466777889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCC
Q 017109 353 QELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 353 ~~~~~~al~~~~~~~~~~~~ 372 (377)
...+..++.....+ |..|.
T Consensus 327 ~~~L~~al~~a~~~-ggs~a 345 (355)
T cd05804 327 LELLGPVRDDLARI-GGSHA 345 (355)
T ss_pred HHHHHHHHHHHHHh-CCcHH
Confidence 99999999998664 44443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-10 Score=112.03 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=142.0
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+.......+.++ ..++..+...|...|++++|.+.|++..+. +-+....++..+..
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ 622 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVN 622 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHH
Confidence 3455666655555544322222222 245556666666777777777777666543 11223456666777
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
.|...|++++|...|.+..+. +- .|. ..+|..+...|...|++++|.++++++.+.- . .....++.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~-----Gv-~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-----~--~pd~~tyn 688 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKK-----GV-KPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG-----I--KLGTVSYS 688 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----C--CCCHHHHH
Confidence 777777777777777766543 11 111 3466677777777777777777777765431 1 22345677
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+...|.+.|++++|..+|++..+. + -.| ...+|..+...|.+.|++++|.+++++.... +. .|+ .
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~----g--~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----Gi-~Pd-~ 754 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSI----K--LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL-----GL-CPN-T 754 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----C--CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CC-CCC-H
Confidence 7788888888888888888776542 1 111 1245777888888888888888888876532 11 121 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.++..+...+...|+.++|..++.++++
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666666788888888888888887765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-11 Score=97.28 Aligned_cols=211 Identities=18% Similarity=0.171 Sum_probs=163.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH---------------------------
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL--------------------------- 174 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--------------------------- 174 (377)
....+..+|.+++..|++++|+..|+++.-+ +|.....+-..|.+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 4567888999999999999999999998764 44444443333333
Q ss_pred -------HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 175 -------YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 175 -------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
.+...++..|+.+.++++.. ++....++...|.++...|+.++|+-.|+.|..+. |.
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~ 366 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PY 366 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hh
Confidence 34445555666666666554 33345788899999999999999999999999886 77
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC----------------------------CCCCHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENG----------------------------EGDSMTCIRRLRYLAQ 299 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~~~~la~ 299 (377)
...+|..|-.+|...|++.+|....+.+++.+.... ....|....+...+|.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 788999999999999999999888877666544321 1122445556678899
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
++...|++..++.++++.+..... ......||+++...+.+.+|..+|..++.+.++
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D---------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPD---------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccc---------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987522 467788999999999999999999999986443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-12 Score=92.96 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC
Q 017109 143 EKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK 222 (377)
Q Consensus 143 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 222 (377)
...+++++++ +|.. +..+|.++...|++++|..+|++++.. +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4677888876 5554 557899999999999999999999987 44456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 223 LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+++|+..|++++.+. |....+++++|.++...|++++|+..|++++++.
T Consensus 74 ~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALMLD--------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999874 6778899999999999999999999999999973
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-11 Score=103.93 Aligned_cols=229 Identities=13% Similarity=0.092 Sum_probs=163.3
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV-ASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l 171 (377)
...|+++.|........... +.|. -.+...+......|+++.|..++.++.+. .|.. .......
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~-----~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~ 159 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHA-----EQPV--VNYLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITR 159 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcc-----cchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHH
Confidence 34689988886655433221 1221 22444466669999999999999999875 3332 2233345
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--------------
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK-------------- 237 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 237 (377)
+.++...|++++|...+++..+. .|++ ..++..++.+|...|++++|...+.+..+..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~-----~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEV-----APRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA 231 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999887 4444 4788889999999999999997766655210
Q ss_pred -----HH---------------hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 238 -----GR---------------VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 238 -----~~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
.. ......+..+.+...++..+...|+.++|...++++++. . .++.... ..
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----~-~~~~l~~---l~ 302 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----Q-YDERLVL---LI 302 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C-CCHHHHH---HH
Confidence 00 000112334567778899999999999999999998873 1 2222221 12
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+. ...++++++++.+++.++. +|+....+..+|.++...|++++|..+|+++++..
T Consensus 303 ~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 303 PR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred hh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 22 2448999999998887765 45557889999999999999999999999999853
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=93.88 Aligned_cols=239 Identities=15% Similarity=0.084 Sum_probs=182.4
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHh
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTS--------KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPH 163 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 163 (377)
...+|.+++|...+...+...+.-+..... --..+......+...|+...++++....+++ .|.
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~W 187 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPW 187 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------Ccc
Confidence 345899999999998888766532211110 1122344455667789999999999999988 788
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+..+...+.+|...|+...|+.-++.+-++ ..++ ...++.++.+++..|+.+.++...++++++. +
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askL-----s~Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKld-----p 254 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKL-----SQDN---TEGHYKISQLLYTVGDAENSLKEIRECLKLD-----P 254 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----cccc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHccC-----c
Confidence 8999999999999999999999999998887 2222 5788999999999999999999999999873 4
Q ss_pred CChhHHHHHHHH---------HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 244 GNIDYADTMYHL---------ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 244 ~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
+|......|-.+ +.-....++|.++++..++.++.-++ ..+........+..|+..-|++.+|+..+
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----ccceeeeeeheeeecccccCCHHHHHHHH
Confidence 444333333222 34455677888888888877764221 12334445566788999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.+++++ .|+.+.++...+..|.....|+.|+.-|+++.+..
T Consensus 331 ~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 331 KEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 999987 36668999999999999999999999999998853
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.8e-11 Score=108.35 Aligned_cols=156 Identities=11% Similarity=0.067 Sum_probs=132.0
Q ss_pred cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017109 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV 258 (377)
Q Consensus 179 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 258 (377)
+....+.+.+-+++.+.+. .+....++.+||.+....|++++|+..++.++++. |+...+..+++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~ 129 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRG 129 (694)
T ss_pred hhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHH
Confidence 4444444445555555443 34446899999999999999999999999999996 8888999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHH
Q 017109 259 LYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338 (377)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 338 (377)
+.+.+++++|+..+++++.. .|.....+..+|.++.+.|++++|+.+|++++.. +|+...++..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 99999999999999999986 3455667889999999999999999999999873 3455789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 339 LALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 339 la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999998853
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=83.59 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=70.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
||..+.++..+|.+|...|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5788999999999999999999999999999999 66666677788999999999999999999999999999998653
|
... |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-10 Score=109.33 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.++..+...|...|++++|.+.|++..+. + .+....+|..+...|.+.|++++|..+|++..+.- - .
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-----v-~ 646 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEY-----N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-----V-K 646 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C-C
Confidence 34455555555556666665555554442 1 11123456666666666666666666666654331 1 1
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
|+ ...+..+...+...|++++|.++++++.+. + ......++..+...|.+.|++++|.+.|++....
T Consensus 647 PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----- 713 (1060)
T PLN03218 647 PD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----G---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----- 713 (1060)
T ss_pred CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 22 345666777777777777777777776542 1 1112345777888888888888888888876542
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 326 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+. .| ...++..+...|.+.|++++|.+++++...
T Consensus 714 g~-~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 714 KL-RP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred CC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 12 256788889999999999999999988754
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-12 Score=82.58 Aligned_cols=77 Identities=35% Similarity=0.565 Sum_probs=69.7
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
+|..+.++.++|.+|..+|++++|+.++++++++ .+..+++++..+.++.++|.++..+|++++|++++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4788999999999999999999999999999999 5555777788899999999999999999999999999999875
|
... |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-10 Score=95.44 Aligned_cols=200 Identities=8% Similarity=-0.075 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHHhcC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 200 (377)
...++..+-.++...+++++|+..+.+++++ +|....++...+.++...| ++++++..+.+++..
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------ 101 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED------ 101 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------
Confidence 3455555556677788999999999999998 8888999999999999998 689999999999987
Q ss_pred CCchhHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKL--EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+|....++...+.++...|+. ++++.+++++++.. +....++...+.++...|+++++++++.++++.
T Consensus 102 --npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 102 --NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred --CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334456899999999888874 67888998988874 777889999999999999999999999999987
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHh---CCh----hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH----cC
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKA---NRL----TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS----TG 347 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 347 (377)
- +....++...+.+.... |.+ ++++.+..+++... |....++..++.++.. .+
T Consensus 172 d--------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 172 D--------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred C--------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccc
Confidence 2 22345677777777655 333 46788888888773 4446677788888877 34
Q ss_pred CHHHHHHHHHHHHH
Q 017109 348 SLMEAQELFERCLE 361 (377)
Q Consensus 348 ~~~~A~~~~~~al~ 361 (377)
+..+|...+.+++.
T Consensus 236 ~~~~~~~~~~~~~~ 249 (320)
T PLN02789 236 SDPEVSSVCLEVLS 249 (320)
T ss_pred cchhHHHHHHHhhc
Confidence 55667777777655
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=91.47 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+..+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++.+ . |.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~---p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----D---AS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C---CC
Confidence 556899999999999999999999987 7888999999999999999999999999999997 3 33
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
...++.++|.++...|++++|+..|++++.+. |.....+.+.+.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHH
Confidence 46899999999999999999999999999985 5555666666665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-10 Score=99.61 Aligned_cols=233 Identities=10% Similarity=0.056 Sum_probs=167.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV-ASACNN 170 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~ 170 (377)
+...|+++.|.....+..... |.....+...|..+...|++++|..++.++.+. .|.. ..+...
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--------~p~~~l~~~~~ 158 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--------AGNDNILVEIA 158 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcCchHHHHH
Confidence 455899999988887655432 222355667799999999999999999999765 2222 234445
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------------
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG------------ 238 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------ 238 (377)
.+.++...|++++|...+++..+. .|+++ .++..++.++...|++++|.+.+.+..+...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK 230 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 699999999999999999999887 44454 6788999999999999999988877663200
Q ss_pred ---H-h----c----------CCCCh----hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 239 ---R-V----L----------GHGNI----DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 239 ---~-~----~----------~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
. . . -...| ........++..+...|++++|...++++++..+. +..... ...
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-----~~~~~~-~~l 304 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-----DRAISL-PLC 304 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-----cccchh-HHH
Confidence 0 0 0 00011 24567778889999999999999999999986332 211100 011
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV--IAAEGLALTLQSTGSLMEAQELFER--CLE 361 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--al~ 361 (377)
........++.+.+++.++++++. +|+.. .....+|.++...|++++|.+++++ +++
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 222333457778888888887765 23335 7788999999999999999999995 544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=108.72 Aligned_cols=196 Identities=11% Similarity=-0.019 Sum_probs=154.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+...+..+.+..+.|+++.|+..++++++. +|........+..++...|+.++|+.++++++.-
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p------- 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS------- 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-------
Confidence 3457788899999999999999999999987 5554322238888888899999999999999821
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.+........+|.++..+|++++|++.|+++++.. |....++..++.++...++.++|+..++++.+..+.
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 22224566667889999999999999999999884 555667778899999999999999999998876221
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.. .+..++.++...++..+|++.++++++.. |.....+..+..++...|-...|.+..++
T Consensus 169 --------~~-~~l~layL~~~~~~~~~AL~~~ekll~~~--------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 169 --------VQ-NYMTLSYLNRATDRNYDALQASSEAVRLA--------PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred --------hH-HHHHHHHHHHhcchHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 11 12445666666788877999999999873 55577888888899999998888877664
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-10 Score=93.59 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=158.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
.+.+++|.....++|. ..|....++...+.++...| ++++++.++.++++. +|....++...+.
T Consensus 50 ~e~serAL~lt~~aI~-------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~ 114 (320)
T PLN02789 50 DERSPRALDLTADVIR-------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRW 114 (320)
T ss_pred CCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHH
Confidence 4555666667666664 34556688999999999998 689999999999987 7778888999999
Q ss_pred HHHHhcCH--hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 174 LYRVKKAF--DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 174 ~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+....|+. ++++.++.++++. ++....++...+.++...|+++++++++.++++.. +....+
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~~N~sA 178 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------VRNNSA 178 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------CCchhH
Confidence 98888874 6788888899887 44556899999999999999999999999999884 566778
Q ss_pred HHHHHHHHHHc---CCh----hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQ---GKE----NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHI 320 (377)
Q Consensus 252 ~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 320 (377)
++..+.+.... |.+ ++++.+..+++.+.+. ...++..++.++.. .++..+|.+.+.+++..
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~--------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR--------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC--------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 88888887765 333 4678888888887332 23457778888776 35567788888776652
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
.+....++..|+.+|...
T Consensus 251 --------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 251 --------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred --------cCCcHHHHHHHHHHHHhh
Confidence 244467888899999864
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.9e-11 Score=91.13 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=137.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|+|.+|+..++++...
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 334455 78888999999999998888886643 5555666667999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.|....+++.+|.+|.+.|++++|..-|.+++++. +....+.+|+|..+.-.|+++.|..++..+...
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~- 197 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS- 197 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 33346899999999999999999999999999997 566778999999999999999999999998763
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
......+..+++.+...+|++++|.....+
T Consensus 198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 222345578999999999999999877654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-10 Score=96.84 Aligned_cols=221 Identities=12% Similarity=0.059 Sum_probs=156.8
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
+...++..+...+..+++.. .-.......+.++..++......+.-+.|++.-.+.... ...++.++..+|
T Consensus 235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad--------~klIak~~~r~g 305 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD--------YKLIAKALARLG 305 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH--------HHHHHHHHHHhh
Confidence 33455566666666666665 333355556677777777777777777777766666554 233556666677
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHh--c----------------CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQES--F----------------GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~--~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 234 (377)
..|...++++.|+.+|++++.-.+.- . .--.|..+.--..-|..++..|+|..|+.+|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 78887788888888887776543220 0 00123334445566888888999999999999987
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
... |.....|.|.|.+|...|.+..|+...+.++++ +|.....|..-|.++..+.+|++|++.|
T Consensus 386 kr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 386 KRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred hcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 763 777888999999999999999999998888886 5566777888899999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
+++++.. |....+...+.++...+
T Consensus 450 ~eale~d--------p~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 450 QEALELD--------PSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHhcC--------chhHHHHHHHHHHHHHh
Confidence 9888763 45566666777776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=90.14 Aligned_cols=121 Identities=14% Similarity=0.221 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
.++.++++..++++++. +|.....+..+|.+|...|++++|+..|++++.+ .|+ ...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~---~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGE---NAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHH
Confidence 56778899999999987 7888999999999999999999999999999998 333 3578899999
Q ss_pred HH-HHccC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 216 FY-LVQRK--LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 216 ~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++ ...|+ +++|...++++++.. |....++..+|..+...|++++|+.+++++++..+
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 75 67787 599999999999984 66778999999999999999999999999998743
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-11 Score=96.75 Aligned_cols=245 Identities=16% Similarity=0.088 Sum_probs=178.9
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHhhCC--CCCHh
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSAL--------QEAKEGFG--ERDPH 163 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~--~~~~~ 163 (377)
..|+++++.....+.++...... ......+.++...++..+|.+.++..- ...+.+.. ...|.
T Consensus 95 ~~~~~~~a~~dar~~~r~kd~~~-------k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pa 167 (486)
T KOG0550|consen 95 MLGRFEEALGDARQSVRLKDGFS-------KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPA 167 (486)
T ss_pred HHHhHhhcccchhhheecCCCcc-------ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCch
Confidence 35666666665555554433222 344556666666666666665554211 11111111 11244
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG- 242 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 242 (377)
...+...-+.++...|++++|...-...+++ ++....++...|.++...++.+.|+.++++++.+......
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s 239 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS 239 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH
Confidence 5566677788999999999999888877776 4444678888999999999999999999999987421100
Q ss_pred ---CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 243 ---HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 243 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
...+.....+..-|.-..+.|++..|.+.|.+++.+.+. +....+..|.+.+.+...+|+..+|+.-++.++.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 001334455667788889999999999999999998554 3345677899999999999999999999999999
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+ ++..+.++...|.++...+++++|.+.++++++....
T Consensus 316 i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 316 I--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred c--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8 4667999999999999999999999999999986544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-09 Score=97.35 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=177.4
Q ss_pred hhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH
Q 017109 102 NAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF 181 (377)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 181 (377)
....++.++.....++.+| .+.+.++.-|...++.+.|....++++++. ....+.++..++.++...+++
T Consensus 460 h~kslqale~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhh
Confidence 3444555555555555655 778899999999999999999999999872 234577888889999888998
Q ss_pred hHHHHHHHHHHHHHHHhcC-------------------------------------------------------------
Q 017109 182 DKAEPLYLEAIKILQESFG------------------------------------------------------------- 200 (377)
Q Consensus 182 ~~A~~~~~~al~~~~~~~~------------------------------------------------------------- 200 (377)
.+|+.....+++-....++
T Consensus 530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 8888887777654333000
Q ss_pred --------------------------------CCc--hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 201 --------------------------------PED--IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 201 --------------------------------~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+++ ......+...+..+...++.++|..++.++-.+. +
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~ 681 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------P 681 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------h
Confidence 000 0112334566777777788888888888887775 6
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH--HHHHHHHHHHhc
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET--VQRKILHIMESS 324 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~ 324 (377)
.....++..|.++...|+..+|.+.|..++.+. |....+...+|.++...|+..-|.. ++..++++
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~---- 749 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL---- 749 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----
Confidence 778889999999999999999999999999872 2233456789999999999888888 89999887
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 325 KGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 325 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+|...++|+.+|.++..+|+.++|.++|..++++.++
T Consensus 750 ----dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 ----DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ----CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 3566899999999999999999999999999997655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=108.86 Aligned_cols=218 Identities=14% Similarity=0.037 Sum_probs=129.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|++++|...+.+... ....+|+.+...|...|++++|+.+|++..+. +-.| ...++..+
T Consensus 269 y~k~g~~~~A~~vf~~m~~----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~p-d~~t~~~l 331 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPE----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSI-DQFTFSIM 331 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHH
Confidence 3456788888777765421 13467888999999999999999999887653 1122 23467777
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..++...|++++|.+.+..+++. + .+....+++.+...|.+.|++++|...|++..+ + ...+
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~-----g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t 393 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRT-----G--FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLIS 393 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-----C--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-Ceee
Confidence 88888888888888888777664 1 111134566677777777777777777765421 1 1245
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
|+.+...|...|+.++|+++|++..+. + -.|+ ..++..+...+...|+.++|.++|+...+.. +. .|
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~----g--~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~p- 460 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAE----G--VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RI-KP- 460 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CC-CC-
Confidence 666667777777777777777765542 1 0111 1224445555556666666666665554321 00 01
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
....+..+..++.+.|+.++|.+.++
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHH
Confidence 12334445555555555555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-10 Score=89.20 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
..+..|+..|+++......++.. ++.. -+...++.++++..++++++. +|...
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~----------~~~~---------~~~~~~~~~~~i~~l~~~L~~--------~P~~~ 73 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA----------DPLH---------QFASQQTPEAQLQALQDKIRA--------NPQNS 73 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh----------Cccc---------cccCchhHHHHHHHHHHHHHH--------CCCCH
Confidence 34567888999887654432211 1110 111267778999999999987 34446
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCC--hhhHHHHHHHHHHHHHHcCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL-YLQGK--ENDSEALFLESIRILEENGE 284 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~ 284 (377)
..+..+|.+|...|++++|+..|++++.+. |....++..+|.++ ...|+ +++|...++++++.
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------ 139 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL------ 139 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh------
Confidence 899999999999999999999999999985 66788899999975 67787 59999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
++....++..+|..+...|++++|+.+++++++..
T Consensus 140 --dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 140 --DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 33345678999999999999999999999999875
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-09 Score=83.21 Aligned_cols=170 Identities=23% Similarity=0.212 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....++..|...+..|++.+|+..|++.+... +.++....+.+.+|.++...|++++|+..+++.++. -|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YP 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CC
Confidence 35778999999999999999999999999874 557788999999999999999999999999999987 45
Q ss_pred CchhHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQR-----------KLEDACTYYERALKIKGRVLGHGNIDY--------------ADTMYHLA 256 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la 256 (377)
+++....+++.+|.++..+. ...+|...++..+... |+++.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999876653 3347788888777665 222322 22234578
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 257 TVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
..|.+.|.+..|+..++.+++.. ++.+....++..++..|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999998874 356677788999999999999988543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-10 Score=81.21 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
++..+..+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 667788999999999999999999999999988 8999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.+++ ...+.++|.++...|+.+.|.+.|+.++..+
T Consensus 99 ~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 KIDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4455 4789999999999999999999999999998
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-10 Score=99.41 Aligned_cols=206 Identities=18% Similarity=0.240 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
++.+...|+..+..|++++|++.+.+++.. +|....++..||.+|..+|+.+++....-.|-.+ .|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~ 205 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPK 205 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCC
Confidence 567778888999999999999999999987 7889999999999999999999999998888877 333
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
++ ..|..++....++|++.+|.-+|.+|++.. |.........+.+|.+.|+...|...+.+++...+..
T Consensus 206 d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 206 DY---ELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred Ch---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 43 678899999999999999999999999985 6667788899999999999999999999999875411
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+...........+..+...++-+.|.+.++.++...... .....+..++.++....+++.|.........
T Consensus 275 ---d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 275 ---DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE------ASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred ---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 122222334455788888888899999999998832222 1234556788999999999999887766554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-09 Score=84.84 Aligned_cols=175 Identities=19% Similarity=0.123 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
....++..|...+..|++.+|+..|++.+.. -|.++....+...+|.++...|++++|+..+++.+... |
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 3567889999999999999999999999987 45677788999999999999999999999999999886 6
Q ss_pred CChhHHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQG-----------KENDSEALFLESIRILEENGEGDS---------MTCIRRLRYLAQTYVK 303 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~ 303 (377)
+++....+++.+|.++.... ...+|+..++..++..++..-... ...+.--..+|..|.+
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999998876543 234677788877776554321100 1112233557899999
Q ss_pred hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 304 ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
.|.+..|+..++.+++.. ++.+....++..++..|...|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999876 334667889999999999999998554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=91.86 Aligned_cols=124 Identities=22% Similarity=0.238 Sum_probs=109.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....++.+..-|.-.+..++|.+|+..|.+|+++ +|..+..|.+.+.+|.++|.++.|++-++.++.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4556778888999999999999999999999998 8888999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN 266 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (377)
++....+|..||.+|..+|++++|++.|++++++. |.......+|..+-...++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCC
Confidence 77788999999999999999999999999999994 555566667766666666555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-08 Score=82.16 Aligned_cols=180 Identities=11% Similarity=-0.039 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.....+..|..+...|++++|+..|++++.. .|..+....+...+|.++...+++++|+..+++.++.. |
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 4556778899999999999999999999987 45667777888999999999999999999999999985 7
Q ss_pred CChhHHHHHHHHHHHHHHcC---------------C---hhhHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQG---------------K---ENDSEALFLESIRILEENGEGDS---------MTCIRRLRY 296 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~ 296 (377)
+++....+++.+|.++...+ + ..+|+..+++.++.+++..-... ...+.--..
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999998865443 1 23566777777766443321000 111222346
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
+|..|.+.|.+..|+.-++.+++... +.+...+++..+...|...|..++|..+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 78899999999999999999998763 3466789999999999999999999887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.3e-09 Score=83.15 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++..|..+...|++++|+..|++.+... +..+....+...+|.++...+++++|+..+++.++. .|+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcC
Confidence 4557788999999999999999999998863 455677788899999999999999999999999998 677
Q ss_pred chhHHHHHHHHHHHHHHcc---------------C---HHHHHHHHHHHHHHHHHhcCCCChhH--------------HH
Q 017109 203 DIRIGVAFHNLGQFYLVQR---------------K---LEDACTYYERALKIKGRVLGHGNIDY--------------AD 250 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~ 250 (377)
++....+++.+|.++...+ + ..+|+..+++.++.. |+++.. +.
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 8888899999998864443 2 245667777776664 222221 22
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
--...|..|.+.|.+..|+.-++.+++-.+ +.+....++..++..|...|..++|......
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 234568889999999999999999988643 4567778899999999999999998876653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-09 Score=93.77 Aligned_cols=243 Identities=16% Similarity=0.119 Sum_probs=164.7
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|........ ..-.+...++...|.++...|++++|...|...++. +|.....+..+..
T Consensus 16 e~g~~~~AL~~L~~~~-------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------NPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNE-------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------NPDNYDYYRGLEE 80 (517)
T ss_pred HCCCHHHHHHHHHhhh-------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHH
Confidence 3577777766664322 233456678889999999999999999999999976 4554444444444
Q ss_pred HHHHhc-----CHhHHHHHHHHHHHH------------------------------------------------------
Q 017109 174 LYRVKK-----AFDKAEPLYLEAIKI------------------------------------------------------ 194 (377)
Q Consensus 174 ~~~~~g-----~~~~A~~~~~~al~~------------------------------------------------------ 194 (377)
+..... +.+.-...|++....
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 442221 122222222221110
Q ss_pred ---------HHHh-----c-------CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 195 ---------LQES-----F-------GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 195 ---------~~~~-----~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
.... . ........++++.+|..|...|++++|+++++++++.. |..+..+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~ 232 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYM 232 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHH
Confidence 0000 0 00112245788899999999999999999999999884 77788999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh---
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL--- 330 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--- 330 (377)
..|.++...|++.+|...++.+..+-.. + -.+-...+..+++.|+.++|.+.+......-. ....+.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-------D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~m 302 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-------D-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDM 302 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-------h-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHH
Confidence 9999999999999999999999876221 1 12234567778889999999887765532211 111111
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
+........|.+|.++|++..|++.|..+.+++..+...
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 234445567999999999999999999999998887553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-09 Score=98.69 Aligned_cols=223 Identities=13% Similarity=0.030 Sum_probs=171.4
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
++.++...++....-..+...|++.+++..|+..... ..+.-..+....|..|...+++++|+..|++++.-.
T Consensus 285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 3344555677777778888999999999999877643 122224477789999999999999999999997642
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-Hh------cCCCChhHHHHHHHHHHHHHHcCChhhH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG-RV------LGHGNIDYADTMYHLATVLYLQGKENDS 268 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (377)
.... ..+........|-..|...+++++|..++++..+... .. ....+++.......++.++...|++.+|
T Consensus 358 ~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 358 GKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred cccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 1110 1121233346788899999999999999999877322 00 1133566778899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 348 (377)
++.+++.+.. .|....+...+|.++...|.+.+|+..++.+..+ +|....+...++.++..+|+
T Consensus 436 e~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 436 QKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhh
Confidence 9999999875 2333456778999999999999999999887766 35557888999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017109 349 LMEAQELFERCLEAR 363 (377)
Q Consensus 349 ~~~A~~~~~~al~~~ 363 (377)
+++|....+..++..
T Consensus 500 ~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 500 WHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999998887743
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-10 Score=91.33 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=151.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|.....-..-+.++...|++++|+..--..+++ ++....++.--|.++...++.+.|+.++++++.+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l----- 232 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL----- 232 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----
Confidence 555566677789999999999999988888877 7788899999999999999999999999999987
Q ss_pred CCCch---------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 200 GPEDI---------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 200 ~~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
+|++. .....+..-|.-.++.|++.+|.+.|..++.+... +....+..|.+.+.+....|+..+|+.
T Consensus 233 dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 233 DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhh
Confidence 44443 34455667788889999999999999999998522 223457889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
-.+.++++ ++..+.++...|.++..++++++|.+.|+++++.-
T Consensus 309 dc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 309 DCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999997 56778889999999999999999999999998764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-10 Score=86.11 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=91.1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
......++..+|.++...|++++|+..+++++.+ .+++.....++.++|.++...|++++|+.++++++.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--- 102 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--- 102 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 4456888999999999999999999999999987 23444456789999999999999999999999999873
Q ss_pred cCCCChhHHHHHHHHHHHHH-------HcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 241 LGHGNIDYADTMYHLATVLY-------LQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
+.....+.++|.++. ..|++++|+..+.+++..+++..+.++
T Consensus 103 -----~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 103 -----PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred -----cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333344455555555 899999999999998888776644444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=79.16 Aligned_cols=171 Identities=15% Similarity=0.058 Sum_probs=139.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
++.+.++-.+..+....|+.+-|..++++.... .|...++...-|..+...|++++|+++|+..++-
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d----- 115 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED----- 115 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-----
Confidence 446778888888999999999999999887665 3444556667788899999999999999998873
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+|....++-.--.+...+|+.-+|++.+.+-++.+ +....++..++.+|...|+|++|.-++++.+-+
T Consensus 116 ---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 116 ---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred ---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 45445666666777788999999999999988887 677899999999999999999999999999875
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhC---ChhHHHHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKAN---RLTDAETVQRKILHIME 322 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 322 (377)
.|.....+..+|.+++-+| +..-|.++|.+++++..
T Consensus 184 -------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 184 -------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 3344455677888887766 56679999999999853
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-10 Score=105.86 Aligned_cols=166 Identities=14% Similarity=0.033 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+|+.+...|...|+.++|++.+++..+. +. .|. ..++..+...+...|..++|..+|+...+.. +. .
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~ 459 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAE-----GV-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RI-K 459 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CC-C
Confidence 34555555555556666665555554432 10 111 2345555555556666666666665554321 10 0
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
| ....|..+...+.+.|++++|.+.+++. + ..| ...+|..+...+...|+.+.|...+++.+++
T Consensus 460 p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-------~--~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~----- 523 (697)
T PLN03081 460 P-RAMHYACMIELLGREGLLDEAYAMIRRA-------P--FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM----- 523 (697)
T ss_pred C-CccchHhHHHHHHhcCCHHHHHHHHHHC-------C--CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-----
Confidence 1 1234566666677777777776665432 1 111 1234666677777777777777777766543
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 326 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.|.....|..++.+|...|++++|.+.+++..+.
T Consensus 524 ---~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 524 ---GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred ---CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 2333457788999999999999999999887654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-10 Score=81.30 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH
Q 017109 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224 (377)
Q Consensus 145 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 224 (377)
.+++++.. +|........+|..+...|++++|...+++++.. + +....++..+|.++..+|+++
T Consensus 5 ~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~---p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----D---PYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHHHHHHH
Confidence 45666654 6777788999999999999999999999999886 3 333578999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+|..++++++... |.....+..+|.++...|++++|+..++++++..+
T Consensus 69 ~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 69 EAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9999999998874 55677889999999999999999999999998743
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-09 Score=99.49 Aligned_cols=218 Identities=17% Similarity=0.138 Sum_probs=158.4
Q ss_pred cccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 115 VSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+++-.|....++..+...+...|++++|+..++.+++. +|.....++.+|.++...+++.++... .++..
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 44566778899999999999999999999999998877 788899999999999999999888877 55555
Q ss_pred HHHhcC-----------CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 017109 195 LQESFG-----------PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 195 ~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (377)
...... .+.+..-.+++.+|.+|..+|+.++|...++++++.. |..+.+++++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-
Confidence 332210 0112223588999999999999999999999999984 77789999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCH----------------H----------------HHHHHHHHHHHHHHhCChhHHH
Q 017109 264 KENDSEALFLESIRILEENGEGDSM----------------T----------------CIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~----------------~----------------~~~~~~~la~~~~~~g~~~~A~ 311 (377)
++++|+.++.+++...-........ . ....+.-+=..|...+++++++
T Consensus 164 dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999998875433211000 0 0011112225666677777777
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.+++.+++.. +....+...++.+|. +.|.. ...+++.+++
T Consensus 244 ~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 244 YILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 7777777763 223456667777776 44433 5555555554
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.8e-10 Score=104.44 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+.-....|......|.+.+|.+ .-+++.......+.-++..+..+..++.++...|++++|+..-.++.-+.++..+.+
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 4445667778888899999999 888888888777778999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
++.....+.+++......++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+++.+.|....+..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999988777777899999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 017109 325 KGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQVC 375 (377)
Q Consensus 325 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 375 (377)
.++....+..++..+++++...+++..|....+....++...+|++|+.+.
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~ 1141 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTK 1141 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccch
Confidence 998888899999999999999999999999999999999999999998764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-09 Score=84.54 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=136.9
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|....+ .+++..+...|+-+.+..+..++... ++........+|......|++.+|+..++++....
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--- 130 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--- 130 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---
Confidence 5555666 88999999999999999988886654 22223455559999999999999999999999885
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....+++.+|.+|.+.|++++|...|.+++++.... ..+..|+|..+.-.|+++.|..++..+...
T Consensus 131 -----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--------p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 131 -----PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE--------PSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred -----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC--------chhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7778999999999999999999999999999985432 245789999999999999999999988754
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
. +....+..+++.+...+|++++|.....+
T Consensus 198 ~--------~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 P--------AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred C--------CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 2 22267888999999999999999876543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-09 Score=79.15 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.+.........++...+...++..+... ++.+....+...+|.++...|++++|...|++++.. .++...
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPEL 83 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHH
Confidence 3344444456889998888777776642 445566888999999999999999999999999986 344555
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
...+...++.++...|++++|+..++.. ++.+....+...+|.++...|++++|...|++++
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6678899999999999999999999662 1224556788889999999999999999999874
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.5e-10 Score=80.54 Aligned_cols=104 Identities=20% Similarity=0.135 Sum_probs=95.5
Q ss_pred C-HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 161 D-PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 161 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+ +......+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++++|+..|.+++.+.
T Consensus 30 ~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-- 99 (157)
T PRK15363 30 DVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-- 99 (157)
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 5 677888999999999999999999999999987 56667899999999999999999999999999884
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++.+..+.++|.++...|+.+.|.+.|+.++..+.
T Consensus 100 ------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 100 ------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 66678899999999999999999999999999873
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-09 Score=92.76 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=179.4
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
+..+.|..........+. -.|...+++...|..+...|+-++|..+...++.. ++....+|.-+|
T Consensus 18 yE~kQYkkgLK~~~~iL~-------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~g 82 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHH
Confidence 344555555555555444 23334467788899999999999999999999874 667778999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++....+|++|+++|+.|+.+ ++++ ..++..++.+..++++++.....-.+.++.. +..-..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~-----~~dN---~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w 146 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKI-----EKDN---LQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASW 146 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHH
Confidence 9999999999999999999998 4444 5789999999999999999988888888775 6667788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
...+..+...|++..|...++...+.......+..............+..+.|.+++|.+.+..--... .+.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--------~Dk 218 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--------VDK 218 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--------HHH
Confidence 999999999999999999999888776533322333445555666777788888888877766543322 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.......+.++..+++.++|...+...+...+.
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 455667788899999999999999888775443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-09 Score=82.58 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=93.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+..++.+|.++...|++++|+..+++++.+. ++++....++.++|.++...|++++|+.++++++.+....
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 34467889999999999999999999999999872 2334456799999999999999999999999999872211
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
.......+.++..+|..+...|++++|+..+.+++...++..+.+++.
T Consensus 106 -~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 106 -PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred -HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 011122333444444444499999999999999999888776655543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.4e-09 Score=77.52 Aligned_cols=123 Identities=20% Similarity=0.104 Sum_probs=100.2
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
..++...+...+++.++- .++.+....+...+|.++...|++++|...|++++... ++......+...++
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 578888887777777665 45566677889999999999999999999999998863 33344567888999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 257 TVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
.++...|++++|+..++... +.+........+|.++...|++++|...|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999986521 233455667889999999999999999999874
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-08 Score=73.81 Aligned_cols=227 Identities=16% Similarity=0.127 Sum_probs=168.9
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
.++....+..|..-+..|....+|++|-..+.+|.+..+.. ....+.+.++...+.+......+.++..+++++..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555667888889999999999999999999999877654 2334567889999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
.+...++ .+..-...+--.....++++|+.+|++++.+.+... ........+...++++.+..++++|-..+.+-
T Consensus 102 ~E~Gspd---tAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VECGSPD---TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHhCCcc---hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 9875433 344445555556678899999999999999986431 12334567778899999999999999988887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 017109 276 IRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQEL 355 (377)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 355 (377)
........ ..+.....+.....+|+...+|..|..+++...++ .+...++...++.+|-..| ..|+.++....
T Consensus 177 ~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 177 GVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred hhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 76665543 22334444555566777788999999999887655 2333445566666665554 46787777655
Q ss_pred H
Q 017109 356 F 356 (377)
Q Consensus 356 ~ 356 (377)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-09 Score=90.23 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=177.9
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|..++-..+..+++..-. ..-..+...+..++..|+...|...+.++.+. +|..-.++..--.+
T Consensus 563 hgt~Esl~Allqkav~~~p-------kae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKl 627 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCP-------KAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKL 627 (913)
T ss_pred cCcHHHHHHHHHHHHHhCC-------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHH
Confidence 3455555555555554322 22245666677888889999999999999987 66677778888888
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
.....+++.|..++.++... ++ ...+++.-+.....+++.++|+.+++++++.+ |.....+..
T Consensus 628 e~en~e~eraR~llakar~~-----sg----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lm 690 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI-----SG----TERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLM 690 (913)
T ss_pred hhccccHHHHHHHHHHHhcc-----CC----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHH
Confidence 88899999999999998774 22 24678888889999999999999999999997 788889999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVI 334 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 334 (377)
+|.++..+++.+.|.+.|...++.++ ...-.+..++.+-...|+...|...++++.-. +|....
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP--------~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~ 754 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCP--------NSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNAL 754 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCC--------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcch
Confidence 99999999999999999998887643 33445778999999999999999999987643 355567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 335 AAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 335 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.+....++-.+.|+.+.|...+.+|++-+++
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 7777788889999999999999999986554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=83.91 Aligned_cols=198 Identities=13% Similarity=0.018 Sum_probs=116.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
..+...+..++...|...+--+-.. ..-+.....+..+|.++...|++++|+..|+++.-+ +|...
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~------~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i 266 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDN------TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNV 266 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhh------ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------Chhhh
Confidence 3344444455554444443322222 224667788899999999999999999999998876 44455
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
..+-..|.++...|+++.-.......+.+. .....-++.-+.+.+..+++..|+.+-+++++.-
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-------- 330 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV--------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-------- 330 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh--------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--------
Confidence 566666666666666666555555544442 1223334444555555566666666666666541
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+.....+...|.++...|++++|.-.|+.+..+. |...++|..|..+|...|++.+|...-..++...
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 1222334455666666666666666666665553 3335566666666666666666665555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-09 Score=78.30 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|........+|..+...|++++|...+++++.. +|....++..+|.++...|++++|..+++++++.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3445577899999999999999999999999886 6677889999999999999999999999999887
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
. +.....+..+|.++...|++++|+..++++++..
T Consensus 81 -~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 -D---PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -C---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 3335788999999999999999999999999885
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=95.29 Aligned_cols=221 Identities=16% Similarity=0.149 Sum_probs=165.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-----CCCCCHhHHHHH------HHHHHHHHHhcCHhHHHHHH
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG-----FGERDPHVASAC------NNLAELYRVKKAFDKAEPLY 188 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~------~~la~~~~~~g~~~~A~~~~ 188 (377)
|..+.....++..+...|-..+|+..+++.--....+ .|..+ ...... -.....|...|++-.--.+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~-kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHG-KAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccc-hHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 4456677788899999999888888887754321111 01000 000000 01234566667776677777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhH
Q 017109 189 LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268 (377)
Q Consensus 189 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (377)
+++.++.+.. .+.+...+|......++|+++.++++.++++. |.....++.+|.+..+.++++.|
T Consensus 474 EkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 474 EKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------ccchhHHHhccHHHHHHhhhHHH
Confidence 7877774432 24466777777778899999999999999985 77888999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 348 (377)
.+.|..++.+ .|....++++++..|...|+-.+|...+.++++... .+ ..++.+.-.+..+.|.
T Consensus 539 v~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-----~~---w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 539 VKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-----QH---WQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-----CC---Ceeeechhhhhhhccc
Confidence 9999999986 445567899999999999999999999999998631 12 4566777778899999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 349 LMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 349 ~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
+++|++.+.+.+.+...-..+.++
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhh
Confidence 999999999999988776655554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-09 Score=95.57 Aligned_cols=217 Identities=17% Similarity=0.121 Sum_probs=170.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
+..+.++..+|.+|....+...|..+|.+|.++ ++..+.+...++..|....+++.|....-.+-+...
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~--- 557 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP--- 557 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch---
Confidence 445677888888888888888898999888887 677788888888888888888888887444333211
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.......+..+|..|...+++..|+..++.++... |....++..+|.+|...|++..|++.|.++..+
T Consensus 558 ---a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 558 ---AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred ---HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 11223445568999999999999999999998874 778899999999999999999999999999886
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
.|......+..+.+....|+|.+|+..+...+....... ......++++..++..+...|=..+|..+++++
T Consensus 626 -------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 626 -------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred -------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 334445567788999999999999999998887653321 111234788888888888899999999999999
Q ss_pred HHHHHhhC
Q 017109 360 LEARKKLM 367 (377)
Q Consensus 360 l~~~~~~~ 367 (377)
++...-..
T Consensus 698 ie~f~~~l 705 (1238)
T KOG1127|consen 698 IESFIVSL 705 (1238)
T ss_pred HHHHHHHH
Confidence 88766544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-08 Score=79.76 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=175.2
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+|..|+.+..+.-+.. +...-.+..-+......|+++.+-.++.++-+. .+ .....+....+
T Consensus 95 l~eG~~~qAEkl~~rnae~~-------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~------~~-~~~l~v~ltra 160 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHG-------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL------AG-DDTLAVELTRA 160 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcC-------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc------CC-CchHHHHHHHH
Confidence 45799999988888754332 223345666678888999999999999998876 22 23455677889
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI---------------- 236 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 236 (377)
.+....|+++.|.....++++. .|.+ ..+......+|...|++.+...++.+..+.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~-----~pr~---~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEM-----TPRH---PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHh-----CcCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 9999999999999999999887 3444 467777888999999998887776543321
Q ss_pred ---HHHhcCCC-C--------------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH---------HHcCCC----
Q 017109 237 ---KGRVLGHG-N--------------IDYADTMYHLATVLYLQGKENDSEALFLESIRIL---------EENGEG---- 285 (377)
Q Consensus 237 ---~~~~~~~~-~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~---- 285 (377)
.++...+. . ...+.....++.-+...|+.++|.+..+++++.. +...+.
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~ 312 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEP 312 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchH
Confidence 01110000 0 0113445567778889999999999998887641 111111
Q ss_pred ----------CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 017109 286 ----------DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQEL 355 (377)
Q Consensus 286 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 355 (377)
.++.....+..||.++.+.+.+.+|..+++.+++.. .....+..+|.++.+.|+..+|.+.
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHH
Confidence 112233567889999999999999999999888763 2267888999999999999999999
Q ss_pred HHHHHHHHHh
Q 017109 356 FERCLEARKK 365 (377)
Q Consensus 356 ~~~al~~~~~ 365 (377)
+++++....+
T Consensus 384 r~e~L~~~~~ 393 (400)
T COG3071 384 RREALLLTRQ 393 (400)
T ss_pred HHHHHHHhcC
Confidence 9999955433
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-09 Score=99.39 Aligned_cols=217 Identities=18% Similarity=0.158 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+.-....|......|.+.+|.+ .-+++.......+.-++..+..+..++.++...|+.++|+.+..++.-+.++..+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 344556677888888999999999 8888888888878889999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.+++.....+.+++......++...|...+.++..+..-..++++|..+....+++.++...++++.|+.+.+.|.+..+
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887778889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 338 (377)
...++........+..+++++...+++..|....+....++....|.+|..+......
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~ 1146 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEW 1146 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHH
Confidence 8888888888889999999999999999999999999999999999988765554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-09 Score=79.77 Aligned_cols=110 Identities=18% Similarity=0.283 Sum_probs=86.5
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
...+..+.+++.+|..+...|++++|+.+++++++.. ++.+....++..+|.++...|++++|+.++++++...
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 102 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN- 102 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3456778899999999999999999999999999873 2333346789999999999999999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCC-------hhhHHHHHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGK-------ENDSEALFLESIRILEE 281 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~ 281 (377)
|.....+..+|.++...|+ +++|+..++++++...+
T Consensus 103 -------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 103 -------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred -------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 5556677788888887665 45555555555554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-08 Score=86.27 Aligned_cols=209 Identities=15% Similarity=0.049 Sum_probs=149.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
++.--..+...|+|++|.....+.+.. .|....+...--.+....++|++|+...+.-... ..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~--------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---------~~ 77 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSI--------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---------LV 77 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhc--------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---------hh
Confidence 333344567789999999999998876 3555566667777888899999988554433221 11
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH------
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL------ 279 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 279 (377)
.....+.-+.|.++.++.++|+..++- . . +....+....|.+++++|+|++|...|+...+-.
T Consensus 78 ~~~~~fEKAYc~Yrlnk~Dealk~~~~----~----~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 78 INSFFFEKAYCEYRLNKLDEALKTLKG----L----D---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred cchhhHHHHHHHHHcccHHHHHHHHhc----c----c---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 112226889999999999999998871 1 1 2223466777899999999999999998764320
Q ss_pred -----------------HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh-------hHHHH
Q 017109 280 -----------------EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL-------DTVIA 335 (377)
Q Consensus 280 -----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~ 335 (377)
.+............+++.|.++...|+|.+|++.++.++.++++....++. +...+
T Consensus 147 ~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 147 ERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 001111122345667899999999999999999999998887765433221 24567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...++-++..+|+.++|...|...+..
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 778999999999999999999888774
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-09 Score=99.28 Aligned_cols=129 Identities=18% Similarity=0.112 Sum_probs=102.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC-----------CC
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG-----------ER 160 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~ 160 (377)
+...++++++...+...+. .+|.....++.+|.++.+.++++++... .++........ .+
T Consensus 41 ~~~~~~~deai~i~~~~l~-------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLK-------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHhcCCHHHHHHHHHHHHH-------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHh
Confidence 3467888888888886664 4456678899999999999998888776 66555322200 11
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
.+..-.+++.+|.||..+|+.++|...+++++++ ++..+.+++++|..|... +.++|+.++.+|+...-
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 2333468999999999999999999999999998 345568999999999999 99999999999998764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=89.56 Aligned_cols=208 Identities=16% Similarity=0.087 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
+.++|+.-+.+...+++.++|+.+++++++. .|.....+..+|.++.++++.+.|.+.|...++.+
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c------ 715 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC------ 715 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC------
Confidence 4577888888888899999999999999987 67888899999999999999999999998888763
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|.....+..++.+-...|..-.|...++++.-. +|.....+......-.+.|..+.|.....++++-++.
T Consensus 716 --P~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 716 --PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred --CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 333467888888888999999999998887644 2666777888888899999999999999999987665
Q ss_pred cCCC-----------CC-----------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 017109 282 NGEG-----------DS-----------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339 (377)
Q Consensus 282 ~~~~-----------~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 339 (377)
.+.- .. .....++..+|.++....+++.|.++|.+++++. ++...++..+
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--------~d~GD~wa~f 857 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--------PDNGDAWAWF 857 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--------CccchHHHHH
Confidence 4420 00 0112345678889999999999999999999874 4456777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~al~ 361 (377)
-..+...|.-++-.+.+.++..
T Consensus 858 ykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhc
Confidence 7888888988777777777655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-08 Score=86.58 Aligned_cols=215 Identities=20% Similarity=0.129 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
+++.....++...|++++|++++++.... -.+....+...|.++..+|++++|...|...++. +|++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn 71 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDN 71 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc
Confidence 56677788899999999999999876654 4567788899999999999999999999999987 4444
Q ss_pred hhHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHHHHHhcCC--------C----------------ChhHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQR-----KLEDACTYYERALKIKGRVLGH--------G----------------NIDYADTMYH 254 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~----------------~~~~~~~~~~ 254 (377)
...+..+..+..... +.+.-..+|++......+...+ . ...++....+
T Consensus 72 ---~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~ 148 (517)
T PF12569_consen 72 ---YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSN 148 (517)
T ss_pred ---HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344555555542222 3444455555443332111000 0 0011223333
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGE---------GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
+-.+|....+..-....+..........+. ..+....++++.+|..|...|++++|+++++++++..
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---- 224 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---- 224 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----
Confidence 333443222222222222222222211111 1122346778899999999999999999999999873
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 326 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|..++.+...|+++...|++.+|...++.+..+
T Consensus 225 ----Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 225 ----PTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred ----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 666899999999999999999999999988764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.7e-09 Score=82.72 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=103.2
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
....+..+..-|.-.+..++|.+|+..|.+|+++ +|..+..|.+.+.+|.+.|.++.|++-++.++.+-
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--- 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--- 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---
Confidence 3456777888899999999999999999999998 44446889999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChh
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLT 308 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (377)
|....+|..||.+|..+|++.+|++.|++++++. ++.. ....+|..+-..+++..
T Consensus 146 -----p~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~Ne---~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 146 -----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PDNE---SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CCcH---HHHHHHHHHHHHhcCCC
Confidence 8889999999999999999999999999999982 2222 33455555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-09 Score=74.60 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+++.+|..+...|++++|+..+.+++.. .++++....+++.+|.++...|++++|+.++++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 56789999999999999999999999876 34555556789999999999999999999999999874 444
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+....++..+|.++...|++++|+.+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5556789999999999999999999999999874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-09 Score=75.05 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
++++.+|..+...|++++|+..+.+++... ++++....+++.+|.++...|++++|+.++++++.. .|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 578899999999999999999999998752 334455788999999999999999999999999987 3455
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+....++..+|.++...|++++|..+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5556789999999999999999999999999884
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-08 Score=77.62 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=86.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+..+..++.+|..+...|++++|+.+|+++++... +.+....++..+|.++...|++++|+..+++++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 5666788999999999999999999999999998732 23335678999999999999999999999999997
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHHHhc
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRK-------LEDACTYYERALKIKGRVL 241 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~ 241 (377)
.+.....+..+|.++...|+ +++|+..++++++...+..
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 22234566777888777655 5566666666666554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-08 Score=85.75 Aligned_cols=250 Identities=18% Similarity=0.082 Sum_probs=162.5
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc----CC-------HHHHHHHHHHHHHHHHhhCCCCCH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ----GK-------LAEAEKLFLSALQEAKEGFGERDP 162 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~~al~~~~~~~~~~~~ 162 (377)
+.+.++++.....+++.... +.........+..+|.+|-.+ .. ..+++..+++|++. ++
T Consensus 406 ~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~ 475 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DP 475 (799)
T ss_pred chhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CC
Confidence 46777888888888887542 122333456777777777443 22 34566666666655 45
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
....+.+.++.-|..+++.+.|..+.++++++. ......++..++.++..++++.+|+.....+++-.....+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 556889999999999999999999999999982 2223678999999999999999999999999887643111
Q ss_pred CCC-----------hh-HHH-HHHH----------------------HHHHHHHcCChhhHHHHHHHHHHHHHHcC----
Q 017109 243 HGN-----------ID-YAD-TMYH----------------------LATVLYLQGKENDSEALFLESIRILEENG---- 283 (377)
Q Consensus 243 ~~~-----------~~-~~~-~~~~----------------------la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 283 (377)
-.+ +. ... +... .+.+....++..+|.....++........
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 000 00 000 0000 01111122334444444444443322110
Q ss_pred ------------CCCC--HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCH
Q 017109 284 ------------EGDS--MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSL 349 (377)
Q Consensus 284 ------------~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 349 (377)
++++ ......+...+..+...++.++|..++.++-.+. +.....++..|.++..+|+.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhh
Confidence 0111 1123345567788888888888888888887774 55578888889999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 350 MEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 350 ~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
++|...|..++. .+|+|+.
T Consensus 701 ~EA~~af~~Al~-----ldP~hv~ 719 (799)
T KOG4162|consen 701 EEAKEAFLVALA-----LDPDHVP 719 (799)
T ss_pred HHHHHHHHHHHh-----cCCCCcH
Confidence 999999988888 5566654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-08 Score=86.37 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..++..+.-.+..++|.+.++..+..++- .|...+++...|..+..+|+-++|..+...++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 34556666677889999999999988874 6677788889999999999999999999999885 3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+....+|..+|.++....+|++|+++|+.|+.+. ++...++..++.+-.++++++-....-.+.++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----- 138 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----- 138 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence 4445799999999999999999999999999984 666788999999999999999888888887775
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+..-..|...+..+...|++..|....+...................+......+..+.|..++|.+.+..
T Consensus 139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 334445678889999999999999999988877765333333444566666777888888998888776644
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-07 Score=72.34 Aligned_cols=194 Identities=17% Similarity=0.102 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
.+.++-+++....+...... .-.++....+-....+....|+.+-|..++.+....+ |.++ .+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~---RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSK---RVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCCh---hHHHHHHHH
Confidence 35566666666666554433 1234566677788888889999999999988876653 2333 456667889
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
+...|++++|+++|+..++- +|....++-.--.+...+|+.-+|++.+.+-++.+.. ...+|..
T Consensus 96 lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~--------D~EAW~e 159 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN--------DQEAWHE 159 (289)
T ss_pred HHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC--------cHHHHHH
Confidence 99999999999999987654 2555556666666778889999999999988887542 2467899
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG---SLMEAQELFERCLEARK 364 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 364 (377)
++.+|...|++++|.-++++.+-+ .|........+|+++.-+| +..-|.++|.+++++.+
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999876 2555677788888887776 56789999999999876
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-09 Score=89.31 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+...|..++..|++++|+..|.++++. .|....++.++|.++...|++++|+..+++++.+ . +.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~---P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL-----D---PS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---cC
Confidence 456688899999999999999999987 6777889999999999999999999999999998 3 33
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY 260 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 260 (377)
...+++.+|.++...|++++|+..|++++.+. |....+...++.+..
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--------P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA--------PGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999984 333444555555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-08 Score=78.14 Aligned_cols=196 Identities=16% Similarity=0.063 Sum_probs=147.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
....+|..|++++..-.+. .|.....+..+|.||+...+|..|..+|++.-.. .|.........
T Consensus 21 I~d~ry~DaI~~l~s~~Er--------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 5667888888887766554 5666778889999999999999999999998776 56666777788
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
+..++..+.+..|+.......+. ......+...-+.+....+++..+..+.++.- + ...+..
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~--------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-------~---en~Ad~ 146 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN--------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-------S---ENEADG 146 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC--------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc-------C---CCccch
Confidence 99999999999998877654332 12234455556677778888888777665421 1 123445
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
..+.|.+..+.|++++|.+-|+.+++.. ... .-.-++++.++...|+++.|+++..+.++.-- .+||+
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvs-----Gyq---pllAYniALaHy~~~qyasALk~iSEIieRG~----r~HPE 214 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVS-----GYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGI----RQHPE 214 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhc-----CCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh----hcCCc
Confidence 7789999999999999999999998873 112 34567899999999999999999998887432 36777
Q ss_pred cc
Q 017109 374 VC 375 (377)
Q Consensus 374 ~a 375 (377)
..
T Consensus 215 lg 216 (459)
T KOG4340|consen 215 LG 216 (459)
T ss_pred cC
Confidence 54
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-08 Score=95.20 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=106.0
Q ss_pred hcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.....|+++++.......+..... ....++..+...|.+.|++++|.+.|++..+ ....++..
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~------~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~ 460 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLI------SYVVVANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISWTS 460 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCC------cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHH
Confidence 344456666666665555443221 1124455566666666666666666654321 11234555
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH-------------------------------HHHHHHHHHHHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI-------------------------------GVAFHNLGQFYLV 219 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~la~~~~~ 219 (377)
+...|...|++++|+..|++.... ..|+.... ..+++.+-..|.+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 555555666666666666555421 11111100 0112233345555
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 017109 220 QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299 (377)
Q Consensus 220 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 299 (377)
.|+.++|...|++. .....+|+.+...|...|+.++|+++|++..+. ...++. .++..+-.
T Consensus 537 ~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~----~T~~~ll~ 597 (857)
T PLN03077 537 CGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES---GVNPDE----VTFISLLC 597 (857)
T ss_pred cCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCc----ccHHHHHH
Confidence 55555555554432 011234555566666666666666666654432 001111 12333444
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+...|+.++|.++|+...+... . .| ....+..+..++.+.|++++|.+.+++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~g----i-~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYS----I-TP-NLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhC----C-CC-chHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55556666666666655543210 0 11 134555566666666666666655554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-06 Score=67.70 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=148.6
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
++....+..|..-+.+|....+|++|...+.++.+..+... .....+.++-..+.+......+.++..+++++...+.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45556677888889999999999999999999998877643 3445577889999999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
+.+.+ +.+..-...+-=..+..++++|+.+|++++.+.+... ........+...++++....++++|-..+.+-.
T Consensus 103 E~Gsp---dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 103 ECGSP---DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HhCCc---chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 77554 3343444445555677899999999999999988754 333445567778999999999999988888776
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.+.........+ ...+.....+|.-..++..|..+++...+
T Consensus 178 ~~~~~~~~y~~~--~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 178 VAADKCDAYNSQ--CKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hHHHHHhhcccH--HHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 666554433333 44555555666777799999988877543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-08 Score=94.70 Aligned_cols=221 Identities=15% Similarity=0.069 Sum_probs=118.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|++++|..++.+... + ...+|+.+-..|...|++++|+..|.+.... .-.| ...++..+
T Consensus 232 y~k~g~~~~A~~lf~~m~~---------~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~------g~~P-d~~ty~~l 294 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR---------R-DCISWNAMISGYFENGECLEGLELFFTMREL------SVDP-DLMTITSV 294 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC---------C-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-ChhHHHHH
Confidence 3446777777777765431 1 1245777888888888888888888887653 1111 12233333
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH-------------------------------HHHHHHHHHHc
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA-------------------------------FHNLGQFYLVQ 220 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~~la~~~~~~ 220 (377)
...+...|+.+.|.+.+..+.+. + ......+ |+.+...|.+.
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~-----g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKT-----G--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHh-----C--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 34444444444444444444332 1 0001234 44444444445
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
|++++|++.|++..+.. .. |+ ...+..+-..+...|++++|.+.+..+.+. + ......++..+...
T Consensus 368 g~~~~A~~lf~~M~~~g---~~---Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~----g---~~~~~~~~n~Li~~ 433 (857)
T PLN03077 368 GLPDKALETYALMEQDN---VS---PD-EITIASVLSACACLGDLDVGVKLHELAERK----G---LISYVVVANALIEM 433 (857)
T ss_pred CCHHHHHHHHHHHHHhC---CC---CC-ceeHHHHHHHHhccchHHHHHHHHHHHHHh----C---CCcchHHHHHHHHH
Confidence 55555544444432220 00 11 112223333444455555555554444332 1 11123345667777
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
|.+.|++++|.+.|++..+ + ...++..+...|...|+.++|...|++...
T Consensus 434 y~k~g~~~~A~~vf~~m~~-------~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE-------K----DVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888888877775421 1 134667777888888888888888888763
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.3e-08 Score=87.70 Aligned_cols=191 Identities=17% Similarity=0.100 Sum_probs=158.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
.+...|...+-+++.+ ++..+.++..||.+|....+...|..+|.+|.++ ++..+.+.-..+..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 4577888888888887 7889999999999999999999999999999998 45556788889999
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
|....+++.|....-.+-+.... ......+..+|..|...+++..|+..++.++.. +|.....+..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~g 601 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLG 601 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHH
Confidence 99999999999885444333211 122334555899999999999999999999985 5566678999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+|.+|...|++..|++.|.++..+. |......+..+.+....|++.+|...+...+.....
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998773 555778888999999999999999999888776543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.2e-09 Score=68.68 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=67.0
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
.+|++++|+.+++++++... .++ ....+..+|.++...|++++|+..+++ .... +........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 36899999999999999832 222 345777799999999999999999999 4443 44466777889
Q ss_pred HHHHHcCChhhHHHHHHHH
Q 017109 257 TVLYLQGKENDSEALFLES 275 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~a 275 (377)
.++..+|++++|++.++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-08 Score=69.44 Aligned_cols=102 Identities=23% Similarity=0.175 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+.+.+|.++...|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999986 55666667899999999999999999999999998753 332
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+........++.++...|+.++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33556677789999999999999999887764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-07 Score=77.05 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=103.4
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
+....+.+..+..++..|++++|+..+...+.. .|++ .......+.++...++..+|.+.+++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N---~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDN---PYYLELAGDILLEANKAKEAIERLKKALALD---- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----
Confidence 345667788888999999999999999886664 2334 4667778999999999999999999998885
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
|.......++|..+.+.|++.+|+..++..+.- .+.....|..||..|..+|+..+|...+.+.
T Consensus 371 ----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 371 ----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred ----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 555677888999999999999999988887763 3444556788899998888877665554443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-07 Score=75.08 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+.....-|..-...|+|.+|+....++-+. .+.-..++..-+.+-..+|+++.+-.++.++-+. .+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~ 149 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AG 149 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CC
Confidence 4455666788888899999999999987654 4445567777788999999999999999998876 22
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH---
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI--- 278 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 278 (377)
++ ........+.+...+|+++.|..-..++.+.. |....+......+|...|++.+...++.+..+.
T Consensus 150 ~~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 150 DD--TLAVELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred Cc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 22 24677889999999999999999999998884 555667777888999999988887766543321
Q ss_pred ----------------HHHcCCCC-C--------------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh----
Q 017109 279 ----------------LEENGEGD-S--------------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES---- 323 (377)
Q Consensus 279 ----------------~~~~~~~~-~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 323 (377)
..+...++ . .....+...++.-+...|+.++|.+..+++++...+
T Consensus 220 ~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 220 SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 01110000 0 001233455677788899999999999888864211
Q ss_pred -----cc--------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 324 -----SK--------------GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 324 -----~~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.. ...||+.+..+..||.++.+.+.+.+|..+++.+++..++
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 00 1224445688999999999999999999999999885443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=66.93 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=66.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLG 214 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 214 (377)
.+|++++|+.+++++++.. +.++ ....+..+|.+++..|++++|+..+++ .+. .+........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 3689999999999999873 1123 566778899999999999999999999 443 222346667789
Q ss_pred HHHHHccCHHHHHHHHHHH
Q 017109 215 QFYLVQRKLEDACTYYERA 233 (377)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~a 233 (377)
.++..+|++++|+..++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-08 Score=85.40 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
+...|...+..|++++|+.+|.+++.. .+++ ..++.++|.++...|++++|+..+++++.+. |.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIELD--------PS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cC
Confidence 456688899999999999999999997 3333 5789999999999999999999999999985 66
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
...+++.+|.++...|++++|+..|++++++
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999987
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=80.63 Aligned_cols=152 Identities=18% Similarity=0.110 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
....+.+..+..++..|++++|+..++..+.. .|.....+...+.++...++..+|.+.+++++..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------ 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL------ 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence 44567888999999999999999999997755 6777788889999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.|.......++|..+...|++.+|+..++..+... |..+..|..|+..|..+|+..+|...
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAqay~~~g~~~~a~~A--------- 430 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQAYAELGNRAEALLA--------- 430 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHHHHHHhCchHHHHHH---------
Confidence 33335788999999999999999999998876653 77788899999999999987766543
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.++.|...|++++|+..+..+.+..
T Consensus 431 ----------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 ----------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ----------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4455666799999999988887664
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=65.18 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 194 (377)
.+.++..+|.+++..|++++|+..|.++++. +|....++.++|.++..+| ++++|+..+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999998 7888999999999999999 799999999999987
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=66.97 Aligned_cols=102 Identities=23% Similarity=0.137 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
++.+.+|..+-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++.. .|++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-----~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-----FPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc
Confidence 46789999999999999999999999974 2345667889999999999999999999999999875 2444
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
+........++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556677789999999999999999877664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=89.48 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=147.7
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|...+|.....+.++.. + ... .|...||+-.=-.+|+++.++.+ ...+.+...+
T Consensus 434 Y~~lg~~~kaeei~~q~lek~-----~---d~~-------lyc~LGDv~~d~s~yEkawElsn-------~~sarA~r~~ 491 (777)
T KOG1128|consen 434 YLLLGQHGKAEEINRQELEKD-----P---DPR-------LYCLLGDVLHDPSLYEKAWELSN-------YISARAQRSL 491 (777)
T ss_pred HHHhcccchHHHHHHHHhcCC-----C---cch-------hHHHhhhhccChHHHHHHHHHhh-------hhhHHHHHhh
Confidence 344566666666666665411 1 223 44455555555667777777742 2345577778
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|......++|+++..+++.++++ .+....+|+.+|.+..+.++++.|.+.|..++... |+...+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~ea 555 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEA 555 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhh
Confidence 88888899999999999999998 56667899999999999999999999999999885 788899
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
++|++..|...|+-.+|...+.++++.- .....++.|.-.+....|.+++|++.|.+.+.+.+....+.+
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn--------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCN--------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcC--------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 9999999999999999999999999863 122234667777888999999999999999988766554333
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-06 Score=71.20 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=174.9
Q ss_pred CCChhhhhhhhhhhhccccccccch-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC--CHhHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIH-------TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER--DPHVA 165 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~ 165 (377)
.|-++++.+...++|.....+...+ ......+-.+..+-.-.|++.+|++....+.+.+.+..++. ....+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 3555666666666665543332221 11233455667777888999999999999999887763311 12346
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.....+|......|.++.|+..|..+.+...+. ...+.+..++|.+|...|+-+.- .++++.. ++.+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~i----~p~n 434 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDL----YKALDLI----GPLN 434 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHH----HHHHHhc----CCCC
Confidence 677888999999999999999999999885442 33567788999999998874432 3333332 2211
Q ss_pred -------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 246 -------IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 246 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
.....+++..|...+.++++.||...+.+.+++....+ ....++-.+..++.+....|+..++.+..+-++
T Consensus 435 t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 435 TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 12355677788888999999999999999999874332 344556667789999999999999999999999
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGS--LMEAQELFER 358 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 358 (377)
+..++. ++++-.......+-.++...|+ .+...+.+..
T Consensus 513 qlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 513 QLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 998887 4455445566667788888888 5555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-07 Score=72.95 Aligned_cols=206 Identities=14% Similarity=0.040 Sum_probs=148.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|.....+..+|.+|+...+|..|-++|++.-.. .|........-+..++..+.+..|+.......+
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D---- 106 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD---- 106 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC----
Confidence 44445567889999999999999999999998776 788888888889999999999999887665543
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+......+...-+-+.+..+++..+....++.- + ...+....+.|.+.++.|++++|.+-|+.+++
T Consensus 107 ----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-------~---en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 107 ----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-------S---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ----CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc-------C---CCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 123334455556666777777777665554421 1 23466778889999999999999999999887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC----------CC-----C------hhHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG----------WN-----S------LDTVIAA 336 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~-----~------~~~~~~~ 336 (377)
. +.-.+.. -++++.++...|+++.|+++..+.++.--+... .+ + .....+.
T Consensus 173 v-----sGyqpll---AYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 173 V-----SGYQPLL---AYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred h-----cCCCchh---HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 6 2223333 467889999999999999998888765322210 00 0 1134566
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 017109 337 EGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 337 ~~la~~~~~~g~~~~A~~~~~ 357 (377)
...+.++.+.|+++.|.+.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhh
Confidence 677888899999998877654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=76.10 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=91.2
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 123 WRVFTDSGRDY-FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 123 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....+..+..+ ...|+|++|+..|+..++.. ++++....+++.+|.+|+..|++++|+..|+++++. .|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YP 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CC
Confidence 35566677665 56799999999999999874 445566789999999999999999999999999987 46
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+++....++..+|.++..+|++++|...|+++++..
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 778888999999999999999999999999998875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=63.15 Aligned_cols=64 Identities=31% Similarity=0.470 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-KLEDACTYYERALKI 236 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 236 (377)
+.++..+|.++...|++++|+.+|.+++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 578899999999999999999999999998 4555789999999999999 799999999999987
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-06 Score=65.79 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=128.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
+++++|.++|.++-.+ |....+++.|=..|.++-+...+.. +..+.+.+|...+.+
T Consensus 28 ~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHH
Confidence 4666666666666544 3344445555555555555544442 223345556655555
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
|.+ +++++|..+++++++++...+.- ...+.-+..+|.+|... .++++|+.+|+++-+.+.... .......++.
T Consensus 84 ykk-~~~~eAv~cL~~aieIyt~~Grf--~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~ssANKC~l 158 (288)
T KOG1586|consen 84 YKK-VDPEEAVNCLEKAIEIYTDMGRF--TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVSSANKCLL 158 (288)
T ss_pred hhc-cChHHHHHHHHHHHHHHHhhhHH--HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhhhHHHHHH
Confidence 544 48889999999999888544321 22344556788888765 899999999999998876542 2223345566
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
..+..-...++|.+|++.|++.....-...-. ....-..+..-|.|+....+.-.+...+++..++.|...
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL-Kys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL-KYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-HhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 77888888999999999999877653222100 011234455667788887888888887777777655543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.5e-08 Score=66.75 Aligned_cols=96 Identities=32% Similarity=0.481 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.. .+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDN- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcc-
Confidence 4678999999999999999999999876 3444578899999999999999999999999886 2222
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
..++..+|.++...|++++|..++.+++..
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 267889999999999999999999988765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-07 Score=74.81 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=91.1
Q ss_pred HHHHHHHHHH-HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 166 SACNNLAELY-RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 166 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...+..+..+ ...|+|++|+..|++.++. .|+++....+++.+|.+|+..|++++|+..|++++... ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 5556666655 5679999999999999998 45666667899999999999999999999999999885 56
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++....++..+|.++...|++++|...|+++++..+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 688899999999999999999999999999988744
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=84.61 Aligned_cols=167 Identities=16% Similarity=0.022 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
.......|.++...|++++|++.+.+. .+ ..+......++..+++++.|.+.++.+.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~------- 161 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG----------GS---LELLALAVQILLKMNRPDLAEKELKNMQQID------- 161 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------
Confidence 345566677888888888888777653 11 2445556778889999999988887754431
Q ss_pred ChhHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQG--KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
.+...+....+++....| ++.+|...|++..+. .+....+++.++.++..+|++++|.+.+.++++.
T Consensus 162 -eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-- 230 (290)
T PF04733_consen 162 -EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-- 230 (290)
T ss_dssp -CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred -CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 222233333444544444 688899888885432 1233456778899999999999999998887643
Q ss_pred hccCCCChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 323 SSKGWNSLDTVIAAEGLALTLQSTGSL-MEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
.+....++.+++.+....|+. +.+.+++.+... ..|+||-
T Consensus 231 ------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~-----~~p~h~~ 271 (290)
T PF04733_consen 231 ------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ-----SNPNHPL 271 (290)
T ss_dssp -------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-----HTTTSHH
T ss_pred ------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----hCCCChH
Confidence 234467888888888888888 555556665444 2455654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.6e-06 Score=70.55 Aligned_cols=224 Identities=15% Similarity=0.042 Sum_probs=161.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCC--CHh----HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC--chh
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGER--DPH----VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE--DIR 205 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~ 205 (377)
+..|-+++|.++-.+++...++....+ .+- ....+..+..+-.-.|++.+|++-...+.+.+.+..++- ...
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 456889999999999998877764333 111 234456677788889999999999999999887763321 223
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
.+.+.+.+|......+.++.|+..|..|.+...+. ...+.+..++|.+|...|+-+.-.+.++. +.+....+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s 437 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNS 437 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCc
Confidence 46678889999999999999999999999886432 33566778899999998875433322221 11110000
Q ss_pred --CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 286 --DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 286 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.......+++..|...+.++++.||...+.+.+++.... .....+...+..++.+....|+..++.+...-++++.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 112334566677888889999999999999999986322 1223356778889999999999999999999999988
Q ss_pred HhhC
Q 017109 364 KKLM 367 (377)
Q Consensus 364 ~~~~ 367 (377)
+++.
T Consensus 516 kKi~ 519 (629)
T KOG2300|consen 516 KKIP 519 (629)
T ss_pred hcCC
Confidence 8864
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-08 Score=66.22 Aligned_cols=96 Identities=29% Similarity=0.464 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
++..+|.++...|++++|+..++++++. .+.. ..++..+|.++...|++++|+.++++++... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 5678999999999999999999999886 2222 3678899999999999999999999998874 3
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33467889999999999999999999988764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-06 Score=82.41 Aligned_cols=211 Identities=15% Similarity=0.063 Sum_probs=162.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.+|...-.|...-....+.++.++|.+.+++|+....-..+...-....++.+|-.. -|.-+.-.+.|++|.+++..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcch
Confidence 445556667777777888999999999999999864211111112234444444444 46677778888888887432
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
..++..|..+|...+++++|.++++..++-+ ......|..++..++.+++-+.|...+.+|++
T Consensus 1530 ---------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1530 ---------YTVHLKLLGIYEKSEKNDEADELLRLMLKKF--------GQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred ---------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999887 34567889999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
..++. .........|.+-++.|+.+.+...|+..+... |.....|....+.-...|+.+-+...|+
T Consensus 1593 ~lPk~------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--------PKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1593 SLPKQ------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--------PKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred hcchh------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--------ccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 87653 233445677899999999999999999888763 4457778888888888889888999998
Q ss_pred HHHHH
Q 017109 358 RCLEA 362 (377)
Q Consensus 358 ~al~~ 362 (377)
+++.+
T Consensus 1659 Rvi~l 1663 (1710)
T KOG1070|consen 1659 RVIEL 1663 (1710)
T ss_pred HHHhc
Confidence 88774
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-07 Score=76.08 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-------hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-------HVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
..+......|+.++..|+|..|...|++++.......+.+.. ....++.+++.++..+++|.+|+..+.+++.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 345667778999999999999999999999887644332221 2456889999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhH-HHHH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS-EALF 272 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~ 272 (377)
. ++++ ..+++..|.++..+|+|+.|+..|++++++. |..-.+...+..+-.+..++.+. .+.|
T Consensus 286 ~-----~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 286 L-----DPNN---VKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred c-----CCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 3333 6899999999999999999999999999995 55556666777766655554433 5666
Q ss_pred HHHHHHH
Q 017109 273 LESIRIL 279 (377)
Q Consensus 273 ~~al~~~ 279 (377)
...+...
T Consensus 350 ~~mF~k~ 356 (397)
T KOG0543|consen 350 ANMFAKL 356 (397)
T ss_pred HHHhhcc
Confidence 6665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-06 Score=64.35 Aligned_cols=178 Identities=15% Similarity=0.067 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
-+..+++-|......|++++|...|+..... .|..+..-.+...++..+.+.+++++|+...++-+... +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 3567888899999999999999999998765 44566667899999999999999999999999999885 6
Q ss_pred CChhHHHHHHHHHHHHHHc-----CChh---hHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHHHHhCC
Q 017109 244 GNIDYADTMYHLATVLYLQ-----GKEN---DSEALFLESIRILEENGEGDS---------MTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~ 306 (377)
.|++...+++..|.++... .+.. +|+.-+++.+..++...-... ...+.--..+|..|.+.|.
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788888888888887653 2333 344444554444332211111 0112223557899999999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 307 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+..|...++.+++-.... +....++..+...|..+|-.++|...-
T Consensus 183 ~~AA~nR~~~v~e~y~~t-----~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 183 YVAAINRFEEVLENYPDT-----SAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred hHHHHHHHHHHHhccccc-----cchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999998875433 445788999999999999999986643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-08 Score=61.37 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+.+|..++..|++++|+..|+++++. .|....++..+|.++..+|++++|+.+++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999965 7889999999999999999999999999999987
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-05 Score=68.96 Aligned_cols=233 Identities=14% Similarity=0.140 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-------hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-------HVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
...+.+++.+.++...|+|.+|++.+++++.++++.+..++. .+..+...++.++..+|+..+|...|...+.
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 366889999999999999999999999999988876543322 2456778899999999999999999988776
Q ss_pred HHHHhcCCCchh---------------------------------------------HHHHHHHHHHHHHHccCHHHHHH
Q 017109 194 ILQESFGPEDIR---------------------------------------------IGVAFHNLGQFYLVQRKLEDACT 228 (377)
Q Consensus 194 ~~~~~~~~~~~~---------------------------------------------~~~~~~~la~~~~~~g~~~~A~~ 228 (377)
... .|.+. ...++.+.+.+.+..+.-+.+.+
T Consensus 253 ~~~----~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 253 RNP----ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred hcC----CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 411 11111 11223333433333333332222
Q ss_pred H---------------------------HHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 229 Y---------------------------YERALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 229 ~---------------------------~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
. ..++.+...... ..+|. ...+...++.+...+|+++.|++.+...+....
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~-~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFA-DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 1 111222222222 22233 356777889999999999999999996553322
Q ss_pred HcCC--CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 281 ENGE--GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 281 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.... ...|.. -..+-.++...++.+.|...+.+++.......... ......+...+.+-.+.|+-++|...+++
T Consensus 408 ss~~~~~~~P~~---V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 408 SSILEAKHLPGT---VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhccChhH---HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 2111 122322 33455677888888999999999999887654432 44556677788888889999999999999
Q ss_pred HHHH
Q 017109 359 CLEA 362 (377)
Q Consensus 359 al~~ 362 (377)
.++.
T Consensus 484 l~k~ 487 (652)
T KOG2376|consen 484 LVKF 487 (652)
T ss_pred HHHh
Confidence 8873
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-06 Score=65.67 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=110.9
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
+...+.+++|.++|.++-.. |...++++.|-..|.++-+...+.... .+.+..|..
T Consensus 24 fgg~~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~sk--hDaat~Yve 79 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAGSK--HDAATTYVE 79 (288)
T ss_pred cCCCcchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHH
Confidence 33345677777776666554 344455566666666666665544322 344566666
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA-NRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+.+|.+ +++.+|..+++++++++...+ .-...+..+..+|.+|... .++++|+.+|+++-+.+...... ...-
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~--ssAN 154 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV--SSAN 154 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh--hhHH
Confidence 6666654 489999999999999988876 3334455567889998865 89999999999999987554322 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.++...+..-...+++.+|+..|++...
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888899999999999998765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-06 Score=57.78 Aligned_cols=102 Identities=25% Similarity=0.216 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...+-..|......|+.+.|++.|.+++.+ -|..+.+|++.+..+..+|+.++|+.-+++++++. ++.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 345566788889999999999999999998 67889999999999999999999999999999984 444
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
......++...|.+|..+|+-+.|..-|+.+-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5566788999999999999999999999998776
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-06 Score=73.13 Aligned_cols=244 Identities=13% Similarity=0.076 Sum_probs=166.9
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|+..+-...+.+++..-.... ..-....++...|..|...|+.+.|...|+++.+.-- +.-.+++.++..-|.
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~k-a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKK-AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAE 433 (835)
T ss_pred hcCChHHHHHHHHHHHHccCccc-CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHH
Confidence 45666666666666665432211 1223357889999999999999999999999987521 113456889999999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHH----hcCCCch------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQE----SFGPEDI------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.-....+++.|..+.+.|...-.. ......| ....++...+......|-++.....|++.+++.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr------ 507 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR------ 507 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh------
Confidence 999999999999999998764211 1111122 123456677777888888999999999998886
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
.-++....|.|..+....-++++.+.|++.+.+++-. ........|......-...-+.+.|..+|++|++.+.
T Consensus 508 --iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p---~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp- 581 (835)
T KOG2047|consen 508 --IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP---NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP- 581 (835)
T ss_pred --cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc---cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-
Confidence 4456677788999999899999999999999875421 2222222233333333334578889999999998642
Q ss_pred ccCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 324 SKGWNSLDT-VIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 324 ~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
|.. -..+...|.+-.+-|-...|+..|+++-
T Consensus 582 ------p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 582 ------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred ------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 3344455666666677777777776653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-06 Score=68.40 Aligned_cols=183 Identities=18% Similarity=0.145 Sum_probs=117.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
..+..+|..|..+..-+..... +. --.+...+|.+++..|+|++|...|.-+.+. +...+....++
T Consensus 32 fls~rDytGAislLefk~~~~~----EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vnL 97 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR----EE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVNL 97 (557)
T ss_pred HHhcccchhHHHHHHHhhccch----hh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchhH
Confidence 4456677777776665552221 22 2355667899999999999999999877653 23345677889
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+.+++..|.|.+|.....++ ++.|.....++.++. +.|+-++-.. |.+.+. +...-
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfhlah---klndEk~~~~-fh~~Lq-----------D~~Ed 153 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFHLAH---KLNDEKRILT-FHSSLQ-----------DTLED 153 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHHHHH---HhCcHHHHHH-HHHHHh-----------hhHHH
Confidence 99999999999988776654 345555555555544 3344322222 222211 11233
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...++.++...-.|.+|++.|.+++. +++.....-..+|.||.++.-++-+.+.+.--+..
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 44566677777778888888887776 45555556667788888887777777666655544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-06 Score=78.62 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHh--------HHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFD--------KAEPLYLEA 191 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a 191 (377)
+--++..|..+...++ ..+|+.+|++++++ +|..+.++..++.++.....+. .+.....++
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445566777776655 78999999999998 8888888888888776654333 222222322
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHH
Q 017109 192 IKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL 271 (377)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (377)
+.+ +..+....++..+|......|++++|...+++++++. +. ..++..+|.++...|++++|++.
T Consensus 411 ~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 411 VAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred hhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 221 1122234678888999999999999999999999984 43 67899999999999999999999
Q ss_pred HHHHHHH
Q 017109 272 FLESIRI 278 (377)
Q Consensus 272 ~~~al~~ 278 (377)
|++++.+
T Consensus 476 ~~~A~~L 482 (517)
T PRK10153 476 YSTAFNL 482 (517)
T ss_pred HHHHHhc
Confidence 9999987
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=70.94 Aligned_cols=182 Identities=16% Similarity=0.085 Sum_probs=129.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN 212 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 212 (377)
+....+|..|+.+++-.+.. +.......-..+|.+++..|+|++|...|.-+..- ++.+ +....+
T Consensus 32 fls~rDytGAislLefk~~~-------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAP--AELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCC--cccchh
Confidence 45678999999999887754 22333466778999999999999999999877652 1222 567889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 213 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
++.+++..|.|.+|.....++-+ .|.....++.++. +.++-++-.. +...+.- +..
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlah---klndEk~~~~-fh~~LqD-----------~~E 152 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAH---KLNDEKRILT-FHSSLQD-----------TLE 152 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHH---HhCcHHHHHH-HHHHHhh-----------hHH
Confidence 99999999999999887766532 3555566665543 4455433333 3332221 112
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
-...+|.+....-.|.+|++.|.+++.- +++....-..+|.||.++.-++-+.+.++-.+.
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 2456788888888999999999998864 455567777899999999999988877766655
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-05 Score=70.14 Aligned_cols=258 Identities=14% Similarity=-0.024 Sum_probs=167.2
Q ss_pred ccCCChhhhhhhhhhhhccccc--cccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSV--VSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.++..++++....-+.-..... .+......+...-..|.+....|++++|+++.+.++....+ ........++..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv 502 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSV 502 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhh
Confidence 4567777777766655433322 22233345566667788899999999999999999987433 223445778889
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+|.+..-.|++++|..+..++.+..++.. .......+....+.++..+|+...|. -.++............+....
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhhhcccchh
Confidence 99999999999999999999999988762 34455677788899999999333222 222222222111111122112
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
.....+.++...-+++.+..-..+.++........ ..........++.++...|++++|...+.+......... +...
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~-~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~ 656 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQ-PLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVD 656 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCch
Confidence 22223333333333777777777777765544322 222222336899999999999999999999988876553 2222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
....++.........+|+.++|.....+.
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 23444445555667889999998887763
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-05 Score=63.15 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+..++.-|......|++++|...|+...... +..|..-.+...++.+++..+++++|+...++-+.. -|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCC
Confidence 4678899999999999999999999887542 445667889999999999999999999999999998 567
Q ss_pred chhHHHHHHHHHHHHHHc-----cCH---HHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQ-----RKL---EDACTYYERALKIKGRVLGHGNIDY--------------ADTMYHLATVLY 260 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la~~~~ 260 (377)
++....+++..|.++... .+. .+|..-+++.+..+ |+++.. +.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887654 223 34444455544443 222211 122345688999
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 017109 261 LQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315 (377)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (377)
+.|.+..|+..++.+++-.+ +.+..-.++..+..+|..+|-.++|...-.
T Consensus 179 kr~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HhcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999999999988644 344556678889999999999999876543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-06 Score=65.12 Aligned_cols=103 Identities=18% Similarity=0.109 Sum_probs=90.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.+...+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence 44567889999999999999999999999999988 8899999999999999999999999999999997
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+.
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 4555678889999999999999998877665443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-07 Score=65.93 Aligned_cols=103 Identities=27% Similarity=0.279 Sum_probs=89.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-++...+..+..|.-++..|++++|..+|+-..-. ++...+.+..||.++..+++|++|+..|..+..+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-- 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-- 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 45567788899999999999999999999887765 56667789999999999999999999999998873
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.++| ...+..|.++..+|+.++|...|..+++.
T Consensus 102 ---~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 ---KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 3343 45788999999999999999999998874
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=72.37 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED-------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+.....-|+.|+..|+|..|...|++++..+....+.+. .....++.|++.++.++++|.+|+....+++.+-
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 344556789999999999999999999998764332221 1245688999999999999999999999999984
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH-HHHHHHH
Q 017109 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD-AETVQRK 316 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~ 316 (377)
+....+++..|.++...|+++.|+..|++++++.+. + -.+...+..+-.+..++.+ ..+.|..
T Consensus 288 --------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-----N---ka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 288 --------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-----N---KAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred --------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-----c---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999998332 2 2233445555544444433 3667777
Q ss_pred HHHHH
Q 017109 317 ILHIM 321 (377)
Q Consensus 317 al~~~ 321 (377)
++...
T Consensus 352 mF~k~ 356 (397)
T KOG0543|consen 352 MFAKL 356 (397)
T ss_pred Hhhcc
Confidence 66554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=69.31 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.++.|.-++..|+|..|...|..-++.+ ++++....+++.||.+++.+|++++|...|..+.+- -|+++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 7889999999999999999999988764 667788999999999999999999999999999986 456777
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...+++.+|.+...+|+.++|...++++++.+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 78999999999999999999999999999886
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-07 Score=70.87 Aligned_cols=103 Identities=21% Similarity=0.183 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
.++.|.-++..|+|..|..-|..-++. .|+......++++||.+++.+|++++|...|..+..-. ++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 788899999999999999999999987 56778888999999999999999999999999998864 66688
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.+.+++.+|.+....|+.++|...++++++.++
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 889999999999999999999999999988744
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=58.09 Aligned_cols=60 Identities=25% Similarity=0.428 Sum_probs=54.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 211 HNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 211 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+.+|..+...|++++|+..|+++++.. |....++..+|.++..+|++++|+.+|+++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357899999999999999999998774 788999999999999999999999999999987
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-06 Score=57.96 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
..+..-|......|+.+.|++.|.+++.++ |..+.+|++.+..+.-+|+.++|++-+.+++++. ++..
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~t 111 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQT 111 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccc
Confidence 344556788888999999999999999984 3336899999999999999999999999999997 4445
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.....++...|.+|..+|+-+.|..-|+.+-++
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 666788999999999999999999999998776
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-05 Score=64.72 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=166.4
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDY---FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
+.|+.+.-...+.++|...+.........--+|..+-.++ ....+.+.+.+.|+.++++.... .-..+..+..
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk----kFtFaKiWlm 409 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK----KFTFAKIWLM 409 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc----cchHHHHHHH
Confidence 3567777777777777766554333322223333333333 34588999999999999974322 4567888899
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
.|.....+.+...|.+.+-.|+-.+.+ + ...-....+-.+.++++....+|++-++.. |..+.
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK-----~----KlFk~YIelElqL~efDRcRkLYEkfle~~--------Pe~c~ 472 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPK-----D----KLFKGYIELELQLREFDRCRKLYEKFLEFS--------PENCY 472 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCc-----h----hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------hHhhH
Confidence 999999999999999999998876432 1 234444556677889999999999998874 88899
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
++...|.+-...|+.+.|...|+-|+..-. -+.|... +......-...|.++.|..+|++.++..+.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpell--wkaYIdFEi~~~E~ekaR~LYerlL~rt~h------- 539 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPA----LDMPELL--WKAYIDFEIEEGEFEKARALYERLLDRTQH------- 539 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHHH--HHHhhhhhhhcchHHHHHHHHHHHHHhccc-------
Confidence 999999999999999999999998886411 1223322 344455566789999999999999876322
Q ss_pred hHHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHHHHHhh
Q 017109 331 DTVIAAEGLALTLQ-----STG-----------SLMEAQELFERCLEARKKL 366 (377)
Q Consensus 331 ~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~ 366 (377)
..++...|..-. ..+ +...|...|++|....++.
T Consensus 540 --~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 540 --VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred --chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 224444444333 444 5677888888887766653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.7e-06 Score=70.59 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh---------cCHhHHHHHHHHHH
Q 017109 125 VFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK---------KAFDKAEPLYLEAI 192 (377)
Q Consensus 125 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 192 (377)
-++..|......+. ...|+.+|.+|+... +-+|..+.++..++.++... .+..+|....++++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 34666777666553 567888888888221 12788899999999888765 23456777777777
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHH
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALF 272 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (377)
++ ++.+ +.++..+|.+....++++.|...|++|+.+. |..+.+++..|.+....|+.++|.+.+
T Consensus 332 el-----d~~D---a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI-----TTVD---GKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc-----CCCC---HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 76 3344 5889999999999999999999999999995 888999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHhCChhHHHHHHHH
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQ-TYVKANRLTDAETVQRK 316 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 316 (377)
++++++ ++.........+-. .|. ....++|+.+|-+
T Consensus 396 ~~alrL-------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL-------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHHhcc-------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 999987 22222222223322 343 4566777777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-05 Score=70.39 Aligned_cols=228 Identities=13% Similarity=0.126 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC---------------------------CCCCHhHHHH------
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF---------------------------GERDPHVASA------ 167 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~------ 167 (377)
.....+..||..|...|.+++|...|++++...-... +.+.......
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 3567899999999999999999999999986432110 0000000000
Q ss_pred ---H---------------------HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH
Q 017109 168 ---C---------------------NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 168 ---~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 223 (377)
+ ..+-.+-...|+..+-+..|.+|+........+. .....+..+|..|...|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G--s~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG--SPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCC--ChhhHHHHHHHHHHhcCcH
Confidence 0 0111222234555666666666665432221111 2356788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-----cCCCCC-----HHHHHH
Q 017109 224 EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE-----NGEGDS-----MTCIRR 293 (377)
Q Consensus 224 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~-----~~~~~~ 293 (377)
+.|...++++....- +.-.+.+.++...|..-....+++.|+.+.+++...-.. ..+..+ .....+
T Consensus 404 ~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 404 DDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred HHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 999999999987631 222456888999999999999999999999998754221 111111 122345
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|...+.+....|-++.-...|++.+++.-. ++....+.|..+..-.-+++|.+.|++.+.+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria--------TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA--------TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 666777777788888888888888776422 2445555666666666666666666665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-06 Score=71.95 Aligned_cols=120 Identities=21% Similarity=0.174 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
.+-.++...++++.|+.++++..+. +|. +...++.++...++..+|+..+.+++.. .|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3445566678999999999987754 343 4556899999999999999999999965 23336
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
..+...+..+...++++.|+...++++... |.....|..|+.+|...|++++|+..++.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 788899999999999999999999999996 88889999999999999999999987764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00031 Score=58.56 Aligned_cols=254 Identities=17% Similarity=0.118 Sum_probs=147.7
Q ss_pred ccCCChhhhhhhhhhhhccc-cccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh-h----CCCC-CHhH
Q 017109 93 TSQNDTEGENAFGLRKIEDG-SVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKE-G----FGER-DPHV 164 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~----~~~~-~~~~ 164 (377)
..+|+++.|.....+.-... ...++.....++.+++.|......+ ++++|..+++++.++.+. . ..++ ....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45688888888877776655 3344455667899999999999999 999999999999999755 1 1111 1345
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++..++.+|...+.++...+ ..++++..++..+ +++. .+..--.+....++.+++.+.+.+++....- .
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~---~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~---~- 154 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPE---VFLLKLEILLKSFDEEEYEEILMRMIRSVDH---S- 154 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcH---HHHHHHHHHhccCChhHHHHHHHHHHHhccc---c-
Confidence 7888999999999988764444 5555555555433 3432 2222222333378899999999988876410 1
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC--ChhHH--HHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN--RLTDA--ETVQRKILHI 320 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al~~ 320 (377)
.............+.. .....|...+...+...-... .++ ..... -+..++...+ +.... ++-....+..
T Consensus 155 -e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~-~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 155 -ESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS-EDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred -cchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC-hhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 1111222222222222 334567777766654322211 111 22111 1222333222 22222 3344444443
Q ss_pred HHhcc-CCCChh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 321 MESSK-GWNSLD----TVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 321 ~~~~~-~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..... ++-.+. ....+.+.|.-.++.++|++|..+|+-++.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22222 222222 224566778889999999999999997763
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-06 Score=59.33 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++..|...+..|+|.+|++.++...... +..+....+...++.+|+..|++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 4678899999999999999999999887653 445667789999999999999999999999999998 778
Q ss_pred chhHHHHHHHHHHHHHHccC---------------HHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRK---------------LEDACTYYERALKIK 237 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~ 237 (377)
++....+++..|.++..+.. ..+|...|++.+...
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 88888999999999998876 667777777777665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.4e-06 Score=71.36 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.+-..+...++++.|+..+++..+. +| .+...++.++...++..+|+..+.+++... |...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--------p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKEN--------PQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--------CCCH
Confidence 3455666678999999998887664 23 245568999999999999999999999653 5557
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
..+...+..+...++++.|+...+++.++ .|.....|..|+.+|...|++++|+..+..
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 88889999999999999999999999997 455667899999999999999999977654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=72.76 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh----HHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRK---LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND----SEALFLESIRI 278 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~ 278 (377)
.+.-++..|.-+...++ ..+|+.+|++++++. |..+.++..++.++.....+.. .+....++...
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34555666766666544 789999999999984 7778888887777765433331 12222222222
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
..... ..+....++..+|..+...|++++|...+++++.+. + ...++..+|.++...|++++|...|++
T Consensus 410 a~al~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 410 IVALP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hhhcc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111 112223567778888888999999999999999883 3 267999999999999999999999999
Q ss_pred HHHH
Q 017109 359 CLEA 362 (377)
Q Consensus 359 al~~ 362 (377)
|+.+
T Consensus 479 A~~L 482 (517)
T PRK10153 479 AFNL 482 (517)
T ss_pred HHhc
Confidence 9984
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-06 Score=67.08 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=90.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKI 194 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~ 194 (377)
.+|..++-|..+|.+|+..|+++.|...|.+|+++ .+.....+..+|.+++.+. ...++...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 55667788999999999999999999999999998 6677788888888877664 456888999999987
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 195 LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
++....+.+.+|..++.+|+|.+|...++..++..
T Consensus 223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 44446899999999999999999999999998886
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00018 Score=65.83 Aligned_cols=200 Identities=18% Similarity=0.166 Sum_probs=124.7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH----HHHHhcCCCch---------hHHHHHHHHHHHHHHccCHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIK----ILQESFGPEDI---------RIGVAFHNLGQFYLVQRKLEDA 226 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A 226 (377)
|...+-..|++.+.-+...++.+.|+++|+++-. +.+-.. ++.+ .....|..-|......|+.+.|
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 4456677899999999999999999999998632 111110 0000 1124677789999999999999
Q ss_pred HHHHHHHHHHHHHh-----cCCC--------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHH------HHHHHHcCCCCC
Q 017109 227 CTYYERALKIKGRV-----LGHG--------NIDYADTMYHLATVLYLQGKENDSEALFLES------IRILEENGEGDS 287 (377)
Q Consensus 227 ~~~~~~al~~~~~~-----~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~ 287 (377)
+.+|..|-+.+... .|.. ......+.+.+|+.|...|++.+|+..|.++ +.++++.+..+.
T Consensus 932 l~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 932 LSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred HHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999887765321 1110 0122356788999999999999999988764 555665542221
Q ss_pred HHHH------HHHHHHHHHHHHhC-ChhHHHHHHHH------------------HHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 288 MTCI------RRLRYLAQTYVKAN-RLTDAETVQRK------------------ILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 288 ~~~~------~~~~~la~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
.... .-....|..|...| ..+.|..+|.+ ++++..+...+... +..+..-++.
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD--p~ll~RcadF 1089 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD--PKLLRRCADF 1089 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC--HHHHHHHHHH
Confidence 1100 01122344455554 55555555543 23333333333322 5677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 017109 343 LQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 343 ~~~~g~~~~A~~~~~~al~~ 362 (377)
+....+|++|..++-.+.+.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 99999999998876555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=65.14 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=89.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR---KLEDACTYYERALKIK 237 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 237 (377)
+|..++-+..||.+|+.+|+++.|..-|.+++++ .++++ ..+..+|.++..+. ...++...+++++..-
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNP---EILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 6788899999999999999999999999999998 44454 66777777776654 4578999999999883
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+....+...||..++.+|+|.+|...++..++..+
T Consensus 224 --------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 224 --------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred --------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 77788999999999999999999999999988743
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=51.33 Aligned_cols=41 Identities=37% Similarity=0.486 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
+.++.++|.+|..+|++++|..++++++++.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56889999999999999999999999999999999999996
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-05 Score=56.03 Aligned_cols=135 Identities=15% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
..-...+|......|++.+|...|++++.-. -......+..++...+..+++..|...+++..+.-+....+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p- 160 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP- 160 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-
Confidence 3456778999999999999999999987542 12335677888999999999999999998887754322222
Q ss_pred CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 287 SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.....+|+.+..+|++.+|...|+.++..... .......+..+..+|+.++|..-+....+..
T Consensus 161 -----d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg---------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 161 -----DGHLLFARTLAAQGKYADAESAFEVAISYYPG---------PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred -----CchHHHHHHHHhcCCchhHHHHHHHHHHhCCC---------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 22456788999999999999999998876421 3455567788888998888877766655543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=73.05 Aligned_cols=159 Identities=17% Similarity=0.073 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+....|.++...|++++|+..+.+. ...++......++..+++++.|.+.++.+.+. ++|.
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~ 164 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDS 164 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcH
Confidence 34566678888899999998887653 12345556778999999999999888776543 2222
Q ss_pred hhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
..+....+.+....| ++.+|..+|++..+.+ +..+..++.++.++..+|++++|...+++++..
T Consensus 165 ---~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--------~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--- 230 (290)
T PF04733_consen 165 ---ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--------GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--- 230 (290)
T ss_dssp ---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---
T ss_pred ---HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---
Confidence 233344444555555 6899999999854332 345677899999999999999999999998753
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhH-HHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTD-AETVQRKILH 319 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 319 (377)
.+....++.+++.+....|+..+ +.+++.+...
T Consensus 231 -----~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 231 -----DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp ------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -----ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 22344567899999999999954 5555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00014 Score=59.15 Aligned_cols=208 Identities=24% Similarity=0.248 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
.......+..+...+++..+...+...... ...+.....+..++..+...+++..+...+.++..... .
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP-----D 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC-----C
Confidence 466778889999999999999999998864 12567788889999999999999999999999887521 1
Q ss_pred chhHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQ-FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 203 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
. .......+. ++...|++++|...+.+++... +............+..+...+++++|+..+.+++.....
T Consensus 128 ~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 P---DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 122333344 8999999999999999996531 100234555666667788899999999999999987433
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. ....+..++..+...+++.+|...+..++..... .......++..+...+..+++...+.+++.
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 3455778999999999999999999999987532 245666777777777889999999999887
Q ss_pred HHH
Q 017109 362 ARK 364 (377)
Q Consensus 362 ~~~ 364 (377)
..+
T Consensus 265 ~~~ 267 (291)
T COG0457 265 LDP 267 (291)
T ss_pred hCc
Confidence 544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-05 Score=58.17 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
....++.-|...+..|+|++|++.++..... -|..+....+...++.+|+..|++++|+..+++-+++ .|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 3567788899999999999999999988776 3445666789999999999999999999999999998 47
Q ss_pred CChhHHHHHHHHHHHHHHcCC---------------hhhHHHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGK---------------ENDSEALFLESIRILE 280 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~ 280 (377)
.|+....+++..|.++..+.. ..+|...|++.+...+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 789999999999999988876 6677777777776643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-06 Score=61.83 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=85.5
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
++......+..|.-++..|++++|...|+-..-. ++.+ ...+..||.++..+++|++|+..|..+..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n---~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFYN---PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 5667788899999999999999999999887765 3333 4568999999999999999999999998875
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+..+...+..|.++...|+.+.|...|+.++.
T Consensus 102 -----~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 -----KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -----cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 22334577899999999999999999999887
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00014 Score=62.23 Aligned_cols=204 Identities=13% Similarity=0.109 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....+...|..-..++++..|...+++|++. +......+...+.+-+.......|...+.+|+.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv--------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l------ 137 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV--------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL------ 137 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc------
Confidence 3455666677777888888888888888865 45667788889999999999999999999999984
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|..-..++....+-...|+...|.+.|++-++.. |. ..++......-.+.+..+.|...|++-+-.
T Consensus 138 --PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~--------P~-eqaW~sfI~fElRykeieraR~IYerfV~~--- 203 (677)
T KOG1915|consen 138 --PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE--------PD-EQAWLSFIKFELRYKEIERARSIYERFVLV--- 203 (677)
T ss_pred --chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC--------Cc-HHHHHHHHHHHHHhhHHHHHHHHHHHHhee---
Confidence 3345677777777778999999999999988773 32 346666667777788889999999887754
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
||. ...+...+..-.+.|+...|...|+.|++.... ...........|..-..+..++.|...|+-+++
T Consensus 204 -----HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 204 -----HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred -----ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 235677888888999999999999999987633 233345566677777888888999888888877
Q ss_pred HHH
Q 017109 362 ARK 364 (377)
Q Consensus 362 ~~~ 364 (377)
..+
T Consensus 273 ~~p 275 (677)
T KOG1915|consen 273 HIP 275 (677)
T ss_pred hcC
Confidence 543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-05 Score=70.38 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=90.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----HHHHhcCCCCh---------hHHHHHHHHHHHHHHcCChhhH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK----IKGRVLGHGNI---------DYADTMYHLATVLYLQGKENDS 268 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A 268 (377)
+...+-.+|++.+..+...++.+.|+++|+++-. +.+-+. ++.+ .....+...|..+...|+.+.|
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 3445567899999999999999999999998632 221111 1101 1124566678888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 348 (377)
+.+|..+.. ++.+..+..-+|+.++|-...++.-. ..+.+.||+.|...|+
T Consensus 932 l~~Y~~A~D----------------~fs~VrI~C~qGk~~kAa~iA~esgd-------------~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 932 LSFYSSAKD----------------YFSMVRIKCIQGKTDKAARIAEESGD-------------KAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHHhhh----------------hhhheeeEeeccCchHHHHHHHhccc-------------HHHHHHHHHHhhhhHH
Confidence 999988765 34455666667887777665554321 3456678888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 017109 349 LMEAQELFERCLEAR 363 (377)
Q Consensus 349 ~~~A~~~~~~al~~~ 363 (377)
..+|+.+|.+|....
T Consensus 983 v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAFS 997 (1416)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887765543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-05 Score=68.17 Aligned_cols=148 Identities=10% Similarity=0.023 Sum_probs=109.9
Q ss_pred hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 99 EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ---------GKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
+.|..++.+++... +.+|..+.++..++.+++.. .+..+|....++|+++ ++..+.++.
T Consensus 275 ~~Al~lf~ra~~~~----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a~~ 342 (458)
T PRK11906 275 YRAMTIFDRLQNKS----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKILA 342 (458)
T ss_pred HHHHHHHHHHhhcc----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHHHH
Confidence 34444555554222 35667788888888887665 2345677777777776 778899999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.+|.+....++++.|...+++|+.+ +|..+.+++..|.+....|+.++|.+.+++++++. |...
T Consensus 343 ~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--------P~~~ 406 (458)
T PRK11906 343 IMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--------PRRR 406 (458)
T ss_pred HHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------chhh
Confidence 9999999999999999999999998 56668999999999999999999999999999985 4332
Q ss_pred H-HHHHHHHHHHHcCChhhHHHHHHH
Q 017109 250 D-TMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 250 ~-~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
. ....+..-.+.....++|+.+|-+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 2 222333313344567888887755
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0021 Score=60.09 Aligned_cols=242 Identities=14% Similarity=0.050 Sum_probs=163.8
Q ss_pred chhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYF-LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
.+...+.+...+|.++. ...++++|+.++++++.+.++. .-......+...++.++...+... |...+++.++.++
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 44556788999999988 7899999999999999987652 222234566677899999888777 9999999999877
Q ss_pred HhcCCCchhHHHHHHHH-HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNL-GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
.. .+.....++..+ .......+++..|.+.++...........+ .....+....+.++...+..+++++.++++
T Consensus 131 ~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 63 122223333333 333434489999999999999887543221 334455556677788888899999999999
Q ss_pred HHHHHHc--CCCCCHHHHHHHHHHHH--HHHHhCChhHHHHHHHHHHHHHHhccCCC---C-------------------
Q 017109 276 IRILEEN--GEGDSMTCIRRLRYLAQ--TYVKANRLTDAETVQRKILHIMESSKGWN---S------------------- 329 (377)
Q Consensus 276 l~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~------------------- 329 (377)
....... .+...+....++..+-. ++...|+++.+...+++.-.......... .
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 7776654 22223334444444443 45567887788777666555443332210 0
Q ss_pred --hh----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 330 --LD----------TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 330 --~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
+. .+-++..-|......|..++|.+++++++...++..
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 00 233444445666677878899999999999998877
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00021 Score=56.63 Aligned_cols=152 Identities=18% Similarity=0.042 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.....-|.+|...|++++|+........+ .+...--.++.++.+++-|...++++.++.+.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence 44555677888888888888877763332 23333445677778888888888887776421
Q ss_pred hhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.++..||..+.. .+++.+|.-+|++.-+. .+.+...+..++.++..+|++++|...++.++...
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 123334443332 34566666666654331 22234456778888888899999888888888653
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+....++.++..+-...|...++..-+
T Consensus 238 --------~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 238 --------AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred --------CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 223667777777777788776655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=72.51 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=64.9
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.+|.....++++|.+|...|+|++|+..|++++++ .|++.....+++++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999998 5555444467999999999999999999999999997
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00042 Score=64.08 Aligned_cols=232 Identities=19% Similarity=0.040 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.....+.......++++|.....++........ +......+.....-|.+....|++++|+++.+.++....+. .
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~ 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---A 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---c
Confidence 4455567788889999999999988876644320 01112345555566888889999999999999999875543 2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN--DSEALFLESIRILE 280 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~ 280 (377)
......++..+|.+..-.|++++|..+.+++.+..++.... .....+....+.++..+|+.. +....+........
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~--~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY--HLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 33446788899999999999999999999999998764332 444556677788999999332 22222322222111
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
... +.+.....+...+...+ -+++.+..-....++........ .....-.+..++.++...|+.++|...+.+..
T Consensus 571 ~q~-~~~~f~~~~r~~ll~~~---~r~~~~~~ear~~~~~~~~~~~~-~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 571 EQK-PRHEFLVRIRAQLLRAW---LRLDLAEAEARLGIEVGSVYTPQ-PLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred hhc-ccchhHHHHHHHHHHHH---HHHhhhhHHhhhcchhhhhcccc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 110 11112222333333333 33677776666666664333221 12222233589999999999999999999888
Q ss_pred HHHHh
Q 017109 361 EARKK 365 (377)
Q Consensus 361 ~~~~~ 365 (377)
.+..+
T Consensus 646 ~l~~~ 650 (894)
T COG2909 646 RLLLN 650 (894)
T ss_pred HHhcC
Confidence 76544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.2e-06 Score=53.27 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+..+|...+++++|+.++++++.+ +|.....+...|.++...|++++|...++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999998 7888999999999999999999999999999987
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.2e-05 Score=56.15 Aligned_cols=137 Identities=17% Similarity=0.103 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
..-.+.+|......|++.+|...|++++.- -.......+..++...+..+++..|...+++..+.-.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------ 155 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------ 155 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------
Confidence 345677899999999999999999999863 2344567888999999999999999999999887621
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
..........+|..+..+|++.+|+..|+.++..+ |. ..+....+..+.++|+.++|..-+....+...+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 12223456778999999999999999999999886 22 344556678889999999998888777665544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=59.63 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+..+-.-|+-++..|+|++|..-|..|++++.... .......|.+.|.+..+++.++.|+.-..+++++.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------- 164 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------- 164 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-------
Confidence 34455568889999999999999999999977652 34557789999999999999999999999999995
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++...|.+|....++++|+.-|.+.++.
T Consensus 165 -pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 -PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 777888889999999999999999999999887
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-05 Score=58.30 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+-.-|.-++..|+|.+|..-|..|++++.... ......++.+.|.+...++.++.|+.-+.+++++
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------- 163 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------- 163 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------
Confidence 355667779999999999999999999999975541 2456778889999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|....++...+.+|..+..|++|+.-|++.++..
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 45556788889999999999999999999998884
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-06 Score=53.29 Aligned_cols=53 Identities=34% Similarity=0.385 Sum_probs=48.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+..|++++|+..|++++.. +|....+...+|.++...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999988 7888999999999999999999999999999886
|
... |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0013 Score=63.82 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=172.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
..+.++.++|...+.+++....-. +......+|..+-+....-|.-+.-.+.|++|.+.+ .-..++..|
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~R--EeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---------d~~~V~~~L 1536 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFR--EEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---------DAYTVHLKL 1536 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcc--hhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---------chHHHHHHH
Confidence 345788888888888888654221 222334445444445555577777888899988863 234678889
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..+|...+.+++|.++++..++-+.+. ..+|...+..++.+.+-+.|...+.+|+....+ ......
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------~eHv~~ 1602 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK------QEHVEF 1602 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch------hhhHHH
Confidence 999999999999999999999875422 468899999999999999999999999998733 234566
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
....|.+.++.|+.+.+...|+..+.. .|.....|.-+...-.+.|+.+-...+|++++...- .+.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l------~~k 1668 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL------SIK 1668 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC------Chh
Confidence 777889999999999999999998874 444455677778888889999999999999998631 233
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhh
Q 017109 332 TVIAAEGLALTLQST-GSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 332 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 366 (377)
.+...+..=.-|.+. |+-......=.+|.+.....
T Consensus 1669 kmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred HhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 345555544445444 66665555556666655544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00022 Score=63.94 Aligned_cols=181 Identities=16% Similarity=0.122 Sum_probs=122.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhH---HHHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHV---ASACNNLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
-.||-+.++..+.++.+. ... ..|.- .-.|+.....+.. ..+.+.|.+.+...... .|.-.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence 458889999999888652 111 11111 1111221111221 23445555555555554 33445
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
......|.++...|+.++|++.+++++....... .....+++.++.++..+.+|++|..++.+..+. +.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence 7788899999999999999999999885432221 233567899999999999999999999998874 34
Q ss_pred HHHHHHHHHHHHHHHHhCCh-------hHHHHHHHHHHHHHHhccCCCChhHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRL-------TDAETVQRKILHIMESSKGWNSLDTVIAAEG 338 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 338 (377)
...+...+..|.++...|+. ++|.+++.++-....+..+...|....+...
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK 394 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRK 394 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHH
Confidence 45566677789999999999 8899999998888877666555533333333
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=71.39 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=62.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHH---HHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVA---SACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
..|.....++++|..|...|+|++|+..|++++++ +|... .+++++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677899999999999999999999999999998 45544 56999999999999999999999999996
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.6e-05 Score=59.57 Aligned_cols=143 Identities=14% Similarity=0.072 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...+.+.+..++.-.|.|.-+...+.+.++. +.+........+|.+.++.|+.+.|..+++..-+...+..+
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~- 247 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG- 247 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc-
Confidence 3567788889999999999999999999884 24556677788999999999999999999988776665532
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
-.....+..+.+.++...+++.+|...+.+++..- +..+.+.++.|.+....|+..+|++.++.+++..+.
T Consensus 248 -~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 248 -LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred -cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23345678889999999999999999999887663 566778889999999999999999999999887543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00018 Score=56.83 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
...+.+.+..++...|.|.-+...+.+.++. +++........+|.+..+.|+.+.|..++++.-+...+..+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 3456778888999999999999999999885 223334667789999999999999999999887666555433
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.....+..+.+.++...+++.+|...+.+++.. ++..+.+.++.|.|..-.|+...|++.++.++++.
T Consensus 249 --q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 249 --QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred --chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344567788899999999999999999888774 23344556788999999999999999999988774
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00013 Score=65.40 Aligned_cols=176 Identities=19% Similarity=0.085 Sum_probs=122.8
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL----VQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
-.|+-+.++..+.++.+. ....++-.......|+....... .....+.|.+.+......+ |.....+
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--------P~s~lfl 270 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--------PNSALFL 270 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--------CCcHHHH
Confidence 358888899888887652 11111101111112222222222 2345677777777777765 6777788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
...|+++...|+.++|++.+++++....+. ......++..++.++..++++++|..++.+..+.. ....
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSk 339 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSK 339 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHH
Confidence 899999999999999999999988533222 22334567889999999999999999999888742 1233
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHhhCCCCCC
Q 017109 333 VIAAEGLALTLQSTGSL-------MEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
+...+..|.++...|+. ++|..++.++-....++.+...|
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 66777889999999999 88999999988888877765444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.4e-06 Score=52.34 Aligned_cols=54 Identities=28% Similarity=0.234 Sum_probs=46.5
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...|++++|+..+++++.. .|....+...+|.++...|++++|...+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5789999999999999998 33345788899999999999999999999988774
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00048 Score=52.91 Aligned_cols=199 Identities=20% Similarity=0.116 Sum_probs=122.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-.|....+++.+|..+...|+|+.|.+.|...+++ +|..-.+..+.|..+..-|++.-|.+-+.+-...
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~--- 162 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD--- 162 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---
Confidence 44567789999999999999999999999999988 7888888999999999999999999888776664
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER-ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
++++|... .|..+ -...-++.+|..-+.+ +....+. ......+-+.+ |+..+ ...++++.
T Consensus 163 --D~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e-----~WG~~iV~~yL-------gkiS~-e~l~~~~~ 223 (297)
T COG4785 163 --DPNDPFRS-LWLYL---NEQKLDPKQAKTNLKQRAEKSDKE-----QWGWNIVEFYL-------GKISE-ETLMERLK 223 (297)
T ss_pred --CCCChHHH-HHHHH---HHhhCCHHHHHHHHHHHHHhccHh-----hhhHHHHHHHH-------hhccH-HHHHHHHH
Confidence 44555321 11111 1123356666654433 2222110 01111122222 33221 22333333
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLME 351 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 351 (377)
....+ ...-......++..+|..+...|+.++|...|+-++...-- +..+...+...++.+...+.+..+
T Consensus 224 a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy----nfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 224 ADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY----NFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred hhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHhccccchhhh
Confidence 32221 10012334567889999999999999999999988764211 112334556666666665544443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00039 Score=55.29 Aligned_cols=219 Identities=11% Similarity=0.121 Sum_probs=146.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
..+.++|+..|++++++- |.....-..++..+..+++.+|++++-.+.|.+.+...+.....+... .+.+.+-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 458899999999999872 233455678899999999999999999999999998776543322221 12222222
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCH----HHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM----TCI 291 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~ 291 (377)
.-....+.+--..+|+..++..+....+ ......-..+|.+|+..++|.+-.+.+++....+....+.++. ...
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 2223344444555666666555433222 3334455678999999999999888888888777766554432 234
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV-IAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++..-..+|-.+.+...-...|++++.+-... .||... .+...=|.++.+.|++++|..-|=+|..-+++
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 445555667778888888888999998875443 244332 23334467788889999998877777765554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=51.57 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=52.7
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|..+|...+++++|++++++++.. +|.....+...|.++..+|++++|...++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 357899999999999999999998 33446889999999999999999999999999885
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00083 Score=46.10 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=87.7
Q ss_pred HHHHHHHHHH--HHHccCHHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 207 GVAFHNLGQF--YLVQRKLEDACTYYERALKIKGRVLGHGN----IDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 207 ~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+.+|..|+.. ....|-|++|...+++++++.+.+..... -..+.++..|+..+...|+|++++....+++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 4455555444 45668999999999999999876643321 12466788899999999999999999999999988
Q ss_pred HcCCCC---CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 281 ENGEGD---SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 281 ~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
..+.-+ ....+.+.++.+..+...|+.++|+..|+.+-++.....|.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 765322 23455667788999999999999999999999987665543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0064 Score=56.95 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=138.1
Q ss_pred HhHHHHHHHHHHHHH-HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 162 PHVASACNNLAELYR-VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 162 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
...+.++..+|.++. ...+++.|+.++++++.++++. + -......+...++.++.+.+... |...+++.++..+..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~-~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-R-LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-c-hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 446888999999888 7899999999999999997762 1 22233556667799999888887 999999999988642
Q ss_pred cCCCChhHHHHHHHH-HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHL-ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 241 ~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
. +.....+...+ ...+...+++..|++.++.........+ +......+....+.+....+..+++++..+++..
T Consensus 133 ~---~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 133 G---HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred C---chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 1 11222222223 3334344899999999999999877554 4444555555667778888889999999999977
Q ss_pred HHHhc--cCCCChhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 320 IMESS--KGWNSLDTVIAAEGLALT--LQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 320 ~~~~~--~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
..... .+..++....++..+-++ +...|+++.+...+++.-+...+..
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~ 259 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIK 259 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 76644 222244445555555444 4567888888888777766665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.001 Score=52.94 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=160.1
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
.+.++|...+.+.++.... ....-..++-++-.+++..|++++.++.|.+.+...+.....+... .+.+.+-..-
T Consensus 41 ~~p~~Al~sF~kVlelEgE---KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyi 115 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGE---KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYI 115 (440)
T ss_pred cCHHHHHHHHHHHHhcccc---cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHH
Confidence 4556666666666654432 3334567888899999999999999999999998876654333222 2222222222
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI----DYADT 251 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 251 (377)
....+.+--..+|+..++..+... +......+-..+|.+|+..|+|.+-.+.+++.-..++.-.|.++. ....+
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 234455566667777777665542 334444566789999999999999999998888877665554432 34556
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
|..-...|..+++-..-..+|++++.+-...+ .+.....+...-|..+.+.|++++|-.-|-+|.+-....+.+...
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP--HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt- 270 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIP--HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT- 270 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCC--chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh-
Confidence 66666788888888888889999988755543 333344445556778889999999988888887766655443222
Q ss_pred HHHHHHHHHHHHHHcC
Q 017109 332 TVIAAEGLALTLQSTG 347 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g 347 (377)
+..-+..+|.++.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2233445566665544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0013 Score=59.76 Aligned_cols=211 Identities=16% Similarity=0.139 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLS------ALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
.+.|-..|.+|-...++++|+++|++ ++++++-.+ .......-..-|.-+...|+++.|+.+|-++-...+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 45566678888888889999988875 455544432 122344445567778888899998888765533211
Q ss_pred Hh---cC--------------CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 197 ES---FG--------------PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 197 ~~---~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
.. .+ .+.......|-.++.-|...|+|+-|.+.|.++-.. ..-...|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my 801 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMY 801 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHH
Confidence 11 00 001111223455677777777887777777664222 1122445
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH------HHHHHHHHhccCC------
Q 017109 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ------RKILHIMESSKGW------ 327 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~------ 327 (377)
.+.|++.+|.++-+++.. ...+...|...+.-.-..|++.+|..+| .+++.++.+....
T Consensus 802 ~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred hccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence 666777776665554421 2234444555566666666666665554 3344443332211
Q ss_pred ---CChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 328 ---NSLD-TVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 328 ---~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.|++ ...+...+|.-+...|+...|...|-++-+
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 1222 356777888999999999888887766544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=64.25 Aligned_cols=96 Identities=27% Similarity=0.234 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+-..|+-|+.+|.|++|+.+|.+++.. +|.....+.+.+.+|+.+..|..|..-+..++.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 456799999999999999999999987 7778888999999999999999999999999998 455
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+..+|...+..-...|+..+|.+-++.++++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 67899999999999999999999999999884
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00088 Score=54.40 Aligned_cols=193 Identities=22% Similarity=0.219 Sum_probs=140.8
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH-
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE- 173 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~- 173 (377)
.+.+..+.......+.. ...+.....+...+..+...+++..++..+..++... ..+ .......+.
T Consensus 72 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~ 138 (291)
T COG0457 72 LGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------PDP--DLAEALLALG 138 (291)
T ss_pred cccHHHHHHHHHHHHhh-----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------CCc--chHHHHHHHH
Confidence 45555555555444432 1334556778888999999999999999999988751 112 223333344
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-YADTM 252 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~ 252 (377)
++...|+++.|...+.+++.. .+............+..+...++++.|+..+.+++... +. ....+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLN--------PDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--------cccchHHH
Confidence 899999999999999999553 11112345566667777889999999999999999886 33 46778
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
..++..+...+++++|...+.+++...+. .......++..+...+.++++...+.+++...
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999987332 23345566777777778999999999988764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00021 Score=58.47 Aligned_cols=165 Identities=13% Similarity=-0.008 Sum_probs=130.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
+.+.+..|++.+|-....+.++- .|....+...--.+++..|+.......+++.+.. ..++-|....+
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~----wn~dlp~~sYv 177 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK----WNADLPCYSYV 177 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc----cCCCCcHHHHH
Confidence 45567788999998888888864 6777777777788899999999888888887764 24566777777
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
...++..+...|-|++|++..++++++. +..+.+....+.++...|++.++.+...+.-...+. ....
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~ml 245 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWML 245 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHH
Confidence 8888999999999999999999999985 666778888999999999999999998876554432 1222
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
...-|-..|.++...+.|+.|++.|+.-+
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 33335567888888899999999998644
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=45.14 Aligned_cols=41 Identities=37% Similarity=0.536 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
+.++.++|.+|..+|++++|+.++++++.+.++..|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56889999999999999999999999999999999988874
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00049 Score=54.59 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
....-|.++...|++++|+........+ ++...--.++.+..+++-|...++++.++-+ +
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide-----d-- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDE-----D-- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccch-----H--
Confidence 3445578899999999999988773322 2333334677788889999999888888721 1
Q ss_pred hHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 205 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.++..||..+.. .+++.+|.-+|++.-+.. +.+....+.++.+++.+|++++|...++.++..
T Consensus 170 ---~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--------~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-- 236 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--------PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-- 236 (299)
T ss_pred ---HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--------CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 244555555543 245677777777654432 455678899999999999999999999999874
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
.+....++.++..+-...|...++.+-+-.-+.
T Consensus 237 ------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 237 ------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred ------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 223356678888888889998887665544333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.003 Score=52.05 Aligned_cols=166 Identities=12% Similarity=-0.076 Sum_probs=125.6
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
-+.+....|++.+|....++.++- .|....+...--..+..+|+.+.....+++.+... .++-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345667789999998888888875 44445566666678888999998888888877653 344566677
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
....++..+...|-|++|.+..++++++ ++....+...++.++...|++.++.+...+.-...+.. ..
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~m 244 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WM 244 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hH
Confidence 7788899999999999999999999987 23334556678899999999999999888765543321 12
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
....-|..-|.++.+.+.++.|++.|.+-+
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 234456677888899999999999998744
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.5e-05 Score=63.07 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
.-..|.-|+++|.|++|+++|.+++... |..+..+.+.+..|+++.+|..|..-+..++.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 3457889999999999999999999885 666778889999999999999999999999987 335
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
...+|...+..-..+|+..+|.+-++.++++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 56778888999999999999999999999873
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=55.31 Aligned_cols=208 Identities=12% Similarity=0.031 Sum_probs=129.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
...+..+.+...+.+...+...+........+..++-..|....+|+.-+.+.+..-.+ ...+......+....|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 33444445555556655555543322334666778888899999999888877765544 11112223456677888
Q ss_pred HHHH---ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhhHHHHHHHHHHHHHHcC
Q 017109 216 FYLV---QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ---------GKENDSEALFLESIRILEENG 283 (377)
Q Consensus 216 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~ 283 (377)
++.+ .|+.++|+..+..++... ....+.++..+|.+|... ...++|+..|.++.++-+..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~- 259 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY- 259 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-
Confidence 8888 899999999999875543 134456777778877532 24677888888887763211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH-H---HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL-H---IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
..-.|++.++...|...+...-+++.. . ..-+....+..........++.+..-.|++++|.+.++++
T Consensus 260 --------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 260 --------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred --------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 113466777777776555444344433 1 1112222222233455666778888899999999999999
Q ss_pred HHHH
Q 017109 360 LEAR 363 (377)
Q Consensus 360 l~~~ 363 (377)
+.+.
T Consensus 332 ~~l~ 335 (374)
T PF13281_consen 332 FKLK 335 (374)
T ss_pred hhcC
Confidence 8753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0013 Score=49.80 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHHHHhhCC-------------CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 127 TDSGRDYFLQGKLA---EAEKLFLSALQEAKEGFG-------------ERDPHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 127 ~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
...|.-|+...+.+ +|-..|+++++....-.. +....-..+...++..+...|++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455566555444 666677777765432211 01122234456788899999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
++.. ..|......+-..++.+...+|.+++|+..+.....- ...+......|.++...|+-++|..
T Consensus 115 ~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---------~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 115 ALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE---------SWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred HHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---------cHHHHHHHHhhhHHHHcCchHHHHH
Confidence 9975 3345556678889999999999999999888764332 3445566778999999999999999
Q ss_pred HHHHHHHHH
Q 017109 271 LFLESIRIL 279 (377)
Q Consensus 271 ~~~~al~~~ 279 (377)
.|+++++..
T Consensus 181 ay~kAl~~~ 189 (207)
T COG2976 181 AYEKALESD 189 (207)
T ss_pred HHHHHHHcc
Confidence 999999863
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0001 Score=57.20 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.-+..-|..++....|+.|+..|.+++.+ +|..+..+.+-+.+++...+++.+..-..+++++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-------- 73 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-------- 73 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------
Confidence 344556677888889999999999999987 8888899999999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
.+..+...+.+|........|++|+..++++..+.+...
T Consensus 74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 566688999999999999999999999999998876543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.3e-05 Score=58.38 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+.-+..-|..++...+|+.|+..|.+++.+ +|..+..+.+.+.++++..+++.+..-.++++++.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~------- 74 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD------- 74 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-------
Confidence 334455677788888999999999999987 55556789999999999999999999999999996
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
+......+.+|........|++|+..++++..+.+....+
T Consensus 75 -~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 75 -PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred -hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 7889999999999999999999999999999988776543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0022 Score=55.78 Aligned_cols=131 Identities=22% Similarity=0.137 Sum_probs=101.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc-----
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED----- 203 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 203 (377)
+-...++..+...-++..++|+++ +|+-+.+|..|+.-.. ....+|+.+++++++..+...+.+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 344456778899999999999998 6777888887776432 3478899999999988766544321
Q ss_pred ------------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHH
Q 017109 204 ------------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL 271 (377)
Q Consensus 204 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (377)
.....+...+|.+..+.|+.++|++.++..++... ..+...+..+|..++...+.|.++...
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 11245667899999999999999999999887641 123566889999999999999999988
Q ss_pred HHHH
Q 017109 272 FLES 275 (377)
Q Consensus 272 ~~~a 275 (377)
+.+-
T Consensus 318 L~kY 321 (539)
T PF04184_consen 318 LAKY 321 (539)
T ss_pred HHHh
Confidence 8774
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0021 Score=48.71 Aligned_cols=100 Identities=19% Similarity=0.100 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
..+...++..+...|++++|+..++.++... .+......+-.+||.+...+|++++|+..+......
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-------- 155 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-------- 155 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--------
Confidence 3455678899999999999999999988652 234455566778999999999999998888764332
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
..........|+++...|+.++|+..|+++++.
T Consensus 156 -~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 -SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred -cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 223556677899999999999999999999986
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0029 Score=50.88 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=152.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 206 (377)
..+++-....+++++|+..|.+.+.--...........-.+..+++.+|...|++..--+.....-+...... .+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence 3566677788999999999998886411110001123456778999999999999887777766666555442 2333
Q ss_pred HHHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 207 GVAFHNLGQ-FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 207 ~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
..+...+-. .-.....++.-+..+...++...+-... ......-..+..++...|+|.+|+......+.-+++..
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~--fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-- 159 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK--FLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-- 159 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--
Confidence 333333322 2234456788888888888876432111 12233445678899999999999999999988888765
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT-VIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
+.+.....+..-..+|....+..++...+..|-.......-| |.. +..-..-|..+..-.+|.-|..+|-++++-+.
T Consensus 160 DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 160 DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 566666667777888999999999888888777665544322 221 22222335566777889999999988877543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.012 Score=49.59 Aligned_cols=210 Identities=14% Similarity=-0.008 Sum_probs=130.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
-|.+-.-.|+-..|.++-.++-++.. .|.+.+ ++..-+..-...|+++.|.+-|+..+.. ......
T Consensus 90 tGliAagAGda~lARkmt~~~~~lls----sDqepL--IhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PEtRll 155 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLS----SDQEPL--IHLLEAQAALLEGDYEDARKKFEAMLDD--------PETRLL 155 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhh----ccchHH--HHHHHHHHHHhcCchHHHHHHHHHHhcC--------hHHHHH
Confidence 35555667888888888888776532 233333 3444466667789999999999887763 111112
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM 288 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (377)
.+..|-.--...|..+.|..|-+++.... |....+....-...+..|+++.|+++.+.......-....-..
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR 227 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER 227 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH
Confidence 23333333456899999999999998886 5555555555566778999999999998766542221100111
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 289 TCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.....+...+... ..-+...|...-.++.++. |+..-.-..-+..+.+.|+..++-..++.+.+ .
T Consensus 228 ~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~ 292 (531)
T COG3898 228 SRAVLLTAKAMSL-LDADPASARDDALEANKLA--------PDLVPAAVVAARALFRDGNLRKGSKILETAWK------A 292 (531)
T ss_pred HHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC--------CccchHHHHHHHHHHhccchhhhhhHHHHHHh------c
Confidence 1111122222222 2245667777777776663 33355566677888888888888888887765 2
Q ss_pred CCCCccc
Q 017109 369 QDHIQVC 375 (377)
Q Consensus 369 ~~~~~~a 375 (377)
..||+++
T Consensus 293 ePHP~ia 299 (531)
T COG3898 293 EPHPDIA 299 (531)
T ss_pred CCChHHH
Confidence 4566654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.014 Score=50.71 Aligned_cols=129 Identities=11% Similarity=0.092 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH-HHHHc-
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR-ILEEN- 282 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~- 282 (377)
..+..+...+.+..+.|+++.|...+.++...... .....+.+....+.++...|+..+|+..++..+. .....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 45678889999999999999999999987765311 1122456777889999999999999999998887 32222
Q ss_pred ------------------------CCCCCHHHHHHHHHHHHHHHHh------CChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 283 ------------------------GEGDSMTCIRRLRYLAQTYVKA------NRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 283 ------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
........+.++..+|...... ++.+++...|.++.+.. +..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~~~ 291 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------PSW 291 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------hhH
Confidence 1111234566777788877777 88899999999998874 333
Q ss_pred HHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQS 345 (377)
Q Consensus 333 ~~~~~~la~~~~~ 345 (377)
..++..+|..+..
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0018 Score=49.75 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=89.1
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
......++..+|..|.+.|+.++|++.|.++.+.+. ........+.++..+....+++.....++.++....+..
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 455678899999999999999999999999887652 224567788899999999999999999999999887774
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+ +..........-|..++..++|.+|...|-.+...+
T Consensus 107 ~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 107 G--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred c--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3 333333444556777788899999999988776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0046 Score=42.58 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=87.8
Q ss_pred HHHHHHHHHHH--HHHcCChhhHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 248 YADTMYHLATV--LYLQGKENDSEALFLESIRILEENGEGDS----MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 248 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
...+|..|+.. ....|-|++|..-+.+++++....+.... -..+.++..|+..+..+|+|++++...++++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34455555444 45678999999999999999887754432 2345677889999999999999999999999988
Q ss_pred HhccCCCC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 322 ESSKGWNS---LDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+...-+. ...+.+.++.+..+...|+.++|...|+.+-++..+-.|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 76543322 224667778889999999999999999999998877555
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00076 Score=53.34 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=79.8
Q ss_pred hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 017109 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG-----NIDYADTM 252 (377)
Q Consensus 178 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 252 (377)
...+++|++.|.-|+-...-. +.++...+..+..+|.+|...|+.+....++++|++.+.+..... ......++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 456788888888888765544 345567789999999999999998888888888888876653221 23446788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+.+|.+..+.|++++|..++.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 89999999999999999999999875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.017 Score=48.79 Aligned_cols=228 Identities=12% Similarity=-0.005 Sum_probs=125.1
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSK-WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
.-.|++++|...+...+. +|.+ .--+..+-.--...|+.+.|+.+.+++... -|....+....
T Consensus 131 l~eG~~~~Ar~kfeAMl~--------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~At 194 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD--------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARAT 194 (531)
T ss_pred HhcCchHHHHHHHHHHhc--------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHH
Confidence 346888888777776653 2221 112223333345678999999999888876 56666666666
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR--IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
-...+..|+++.|+++.+.......- +++... .+..+..-+.... .-+...|...-.++.++. ++..
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vi--e~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pdlv 263 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVI--EKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA--------PDLV 263 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------Cccc
Confidence 67778899999999998876553111 111111 1111111111111 123444555555544443 3333
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHH-----------------------------HHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESI-----------------------------RILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al-----------------------------~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
.+-..-+..++..|+..++-..++.+. ++..- .++........+..
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~a 338 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEA 338 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHH
Confidence 333344444445555444444444433 32111 12223334455666
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 017109 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-GSLMEAQELFERCLE 361 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 361 (377)
-+.-|++..|..--+.+.... | ...++..|+++-... |+-.+...++.+++.
T Consensus 339 Alda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 339 ALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 666666666666655555442 1 245667778887655 888888888888775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0037 Score=46.60 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC--C------------HhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER--D------------PHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
..+...|......|+...++..+++++.+++-.+-++ . .....+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4444556667778899999999999998775432211 0 1234566778888999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
+++.. +|..-.++..+..++...|+..+|+..|++......+-.|
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 99998 4555678999999999999999999999999888775444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0045 Score=53.64 Aligned_cols=264 Identities=15% Similarity=0.106 Sum_probs=162.7
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhhCCC---------C
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTS--KWRVFTDSGRDYFLQGKLAEAEKLFLSALQ-EAKEGFGE---------R 160 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~---------~ 160 (377)
+-.|++..|.++....=-....-+...|. ..-.++++|.+++..|.|.-+..+|.+|++ ...+...+ .
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 44688888877766432222211111222 344568999999999999999999999995 43333111 0
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC------------------
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK------------------ 222 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------ 222 (377)
......++++.|..|...|++-.|.++|.++...+... | ..|..++.++....+
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-----P---rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~ 402 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-----P---RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRV 402 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-----c---HHHHHHHHHHHHHhhhhhhhhccCCccccccee
Confidence 12346788999999999999999999999999987653 2 456666666553100
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHh-------------------------------
Q 017109 223 -------------------------------LEDACTYYERALKIKGRV------------------------------- 240 (377)
Q Consensus 223 -------------------------------~~~A~~~~~~al~~~~~~------------------------------- 240 (377)
.+-|.-+++.++-+..+.
T Consensus 403 ~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~S 482 (696)
T KOG2471|consen 403 HVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDS 482 (696)
T ss_pred eeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcch
Confidence 223444555554433100
Q ss_pred ---cC-------CCCh--------hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 017109 241 ---LG-------HGNI--------DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV 302 (377)
Q Consensus 241 ---~~-------~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 302 (377)
.+ +..| ....++.+.+.+-...|+.-.|+..-.+.++..+-. .......+..-|..+.
T Consensus 483 k~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS----~~~kfLGHiYAaEAL~ 558 (696)
T KOG2471|consen 483 KEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLS----KIYKFLGHIYAAEALC 558 (696)
T ss_pred hcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHH
Confidence 00 0111 123456677888889999999999998888753221 1111112233345555
Q ss_pred HhCChhHHHHHHHHHH------HH------HHh----------ccCCC------Chh--HHHHHHHHHHHHHHcCCHHHH
Q 017109 303 KANRLTDAETVQRKIL------HI------MES----------SKGWN------SLD--TVIAAEGLALTLQSTGSLMEA 352 (377)
Q Consensus 303 ~~g~~~~A~~~~~~al------~~------~~~----------~~~~~------~~~--~~~~~~~la~~~~~~g~~~~A 352 (377)
.+.+..+|..++.--+ .+ +.. ..+.. .++ ......+||..+.-+|++++|
T Consensus 559 lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqA 638 (696)
T KOG2471|consen 559 LLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQA 638 (696)
T ss_pred HcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHH
Confidence 6788888877765411 00 000 00000 111 234678999999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 017109 353 QELFERCLEARKKLMP 368 (377)
Q Consensus 353 ~~~~~~al~~~~~~~~ 368 (377)
..++..+..+..+..+
T Consensus 639 k~ll~~aatl~hs~v~ 654 (696)
T KOG2471|consen 639 KSLLTHAATLLHSLVN 654 (696)
T ss_pred HHHHHHHHHhhhcccc
Confidence 9999999888775443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0031 Score=48.39 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCh
Q 017109 228 TYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL 307 (377)
Q Consensus 228 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (377)
+-++.-++..+...+. .....++..+|..|.+.|+.++|++.|.++.+... ........+.++..+....|++
T Consensus 17 ~~Le~elk~~~~n~~k--esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGK--ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCH
Confidence 3344444444433333 66678899999999999999999999999877532 3345667788899999999999
Q ss_pred hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 308 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.....++.++-.......++.. .......-|..+...++|.+|...|-.+..
T Consensus 90 ~~v~~~i~ka~~~~~~~~d~~~--~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKGGDWER--RNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHH--HHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 9999999999988766433222 233444556667778999999888876654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0032 Score=46.94 Aligned_cols=107 Identities=21% Similarity=0.168 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC--------------chhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE--------------DIRIGVAFHNLGQFYLVQRKLEDACTYYERA 233 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 233 (377)
+...|......|+...+...+++++.+++..+-++ ......+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445556667788888888888888765332211 1123456677888899999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 234 LKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
+... |..-.++..+..++...|+..+|+..|++....+.+.
T Consensus 89 l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 9984 7777889999999999999999999999998887754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0062 Score=52.07 Aligned_cols=179 Identities=15% Similarity=0.070 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH---hcCHhHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV---KKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 198 (377)
...+..++=..|....+|+.-+.+.+..-.+ ...+-+....+....|.++.+ .|+.++|+..+..++...
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~--- 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD--- 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---
Confidence 3455666677788889998888777665443 111123345566788888888 899999999999876542
Q ss_pred cCCCchhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQ---------RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (377)
......++..+|.+|... ...++|+..|.++.++. + ....-.|++.++...|...+..
T Consensus 213 ----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~-~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 213 ----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------P-DYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred ----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------c-cccchHHHHHHHHHcCCcccch
Confidence 222246778888887643 23566777777666653 1 1233446677777777655544
Q ss_pred HHHHHHH-H---HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 270 ALFLESI-R---ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 270 ~~~~~al-~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.-+++.. . +.-+.+..+.....+....++.+..-.|++++|...++++...
T Consensus 280 ~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 280 EELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444433 2 1212222223334445567788888899999999999999876
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=44.72 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=63.1
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHG-NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
....|+|.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++++.++.+ +......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4578999999999999999886654432 124566788999999999999999999999999999976 4444444444
Q ss_pred HHHHH
Q 017109 296 YLAQT 300 (377)
Q Consensus 296 ~la~~ 300 (377)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0012 Score=52.30 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=80.2
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC-----ChhHHHH
Q 017109 261 LQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN-----SLDTVIA 335 (377)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~ 335 (377)
....+++|++.|.-|+-...-.. ..+...+..+..+|.+|...|+.+....++++|++.+.+..... ..+...+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~-~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKK-EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34567889999998887765543 34457788899999999999998888888888888776654222 2345678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
++.+|.+..+.|++++|..++.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999998873
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=53.38 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
...+.-+..-|+-|+...+|..|+..|.+++.. ..+|....+..|.+.+-+....|+|..|+.-+.+++.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~----kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK----KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh----cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 347888899999999999999999999999975 22444567888999999999999999999999999997
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|....+++.-|.++....++++|...++..+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45557899999999999999999999999887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00026 Score=40.20 Aligned_cols=42 Identities=33% Similarity=0.396 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
.++..+|..|...|++++|+..|+++++. +|....++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999998 6777778877765
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0033 Score=42.64 Aligned_cols=82 Identities=24% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGER-DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFH 211 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 211 (377)
....|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++++++.++.. |......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4678999999999999999877653222 124567788999999999999999999999999999873 3444445555
Q ss_pred HHHHH
Q 017109 212 NLGQF 216 (377)
Q Consensus 212 ~la~~ 216 (377)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00034 Score=37.64 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 335 AAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 335 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++..||.+|..+|++++|+.+|++++.+..+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999877664
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=51.84 Aligned_cols=110 Identities=16% Similarity=0.092 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC---CHH-------HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD---SMT-------CIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
..++..-|+-++..|+|.+|...|.+|+...+...... .+. ..-.+.+.+.|++..|++-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999998766543221 121 22356789999999999999999999888
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.. +|....+++..|..+...=+.++|..-+.+++++.+.+
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 76 46668999999999999999999999999999876554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0031 Score=49.54 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC---CCCHh-------HHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG---ERDPH-------VASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
....++..-|+-++..|+|.+|...|+.|+...+...- +..|. ....+.+++.|+...|+|-+++++...
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34577889999999999999999999999987665421 22222 345678999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.+.. ++....+|+..|......-+.++|..-+.+++++-
T Consensus 256 iL~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 256 ILRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 9886 55567899999999999999999999999999884
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00046 Score=37.11 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
++.+||.+|..+|++++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3678999999999999999999999877644
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.027 Score=45.52 Aligned_cols=190 Identities=9% Similarity=0.015 Sum_probs=129.2
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHH----HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKI----LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..+++-....+++++|+..|.+.+.- -++. ....-.+..+++.+|...|++..-.+......+.......
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-- 80 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-- 80 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc--
Confidence 45666677788999999999888764 1111 1122457789999999999988776666665555433221
Q ss_pred ChhHHHHHHHHHH-HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 245 NIDYADTMYHLAT-VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 245 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
+....+...+-. .-.....++.-+..+...++...+.. ........-..+..++.+.|+|.+|+......+.-.++
T Consensus 81 -~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 81 -PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred -hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 333333333322 22334567778888888887765532 22233344567888999999999999999998888777
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
..+. +....++..-+.+|....+..++...+..|......++-|
T Consensus 158 ~DDK--~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP 201 (421)
T COG5159 158 YDDK--INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP 201 (421)
T ss_pred hcCc--cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Confidence 6443 4457777778899999999999888888777766665544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=55.32 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=105.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh--HHH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR--IGV 208 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~ 208 (377)
..+....+..-+..-.+.+..+ ......++..-+..++..|++.+|.+.+...-- .+...+...+. ...
T Consensus 214 r~llq~~~Lk~~krevK~vmn~--------a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNI--------AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCI 284 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhh--------cCCCcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhhe
Confidence 3344444444444444444443 123456677788899999999999888765322 11111111222 344
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCC---C------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALK-IKGRVLGH---G------NIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.++++|.+++.+|.|.-+..+|.+|+. .+.++... . ......++++.|..|...|++-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 568999999999999999999999996 44433211 0 1123568899999999999999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
+...+ ..|..+|.++..
T Consensus 365 fh~nP--------rlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNP--------RLWLRLAECCIM 381 (696)
T ss_pred HhcCc--------HHHHHHHHHHHH
Confidence 76542 457778887764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00014 Score=38.44 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHH
Q 017109 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEP 186 (377)
Q Consensus 145 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 186 (377)
+|++++++ +|....+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788887 89999999999999999999999863
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00046 Score=39.14 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
.++..+|..|...|++++|++.|+++++.. |+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCCHHHHHHhhh
Confidence 467889999999999999999999999985 666677777764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00068 Score=35.89 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
+.+++.+|.++...|++++|+..|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 367999999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0055 Score=51.17 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
+|..+.....+.+..+.|..+|.+|.+. ......+|...|.+-+. .++.+.|...|+.+++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence 4556667777777799999999999742 22234678888888666 566677999999999987
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
+.....+......+...|+.+.|..+|++++.... .....-.+|......-...|+.+....+.+++.+....
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 55556677777888999999999999999987521 12213456777788888889999999999888877533
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.064 Score=44.57 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=153.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHh----HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPH----VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...+......+++++++..+...+...+.. ..++. .-.....+|.++...|+..+-.......-.......
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~--- 82 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS--- 82 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---
Confidence 445555666777888999988888753222 11222 345678999999999999988777777666655442
Q ss_pred chhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYL-VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.+..+.....+-.... .-+..+.-+..+..+++...+.... ...-..-..+..+|...++|.+|+......+.-.++
T Consensus 83 KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt--FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 83 KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT--FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 2333333333333333 3355667788888888887542111 122334456889999999999999999999888888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT-VIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
.. +......++..=..+|....+..+|...+..|-......+-+ |.. +..-..-|.++....+|..|..||=++.
T Consensus 161 lD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAf 236 (411)
T KOG1463|consen 161 LD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAF 236 (411)
T ss_pred cc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHHH
Confidence 75 555556666666788889999999988888777665444322 322 2222333566677789999999999998
Q ss_pred HHHHhh
Q 017109 361 EARKKL 366 (377)
Q Consensus 361 ~~~~~~ 366 (377)
+-+..+
T Consensus 237 Egf~s~ 242 (411)
T KOG1463|consen 237 EGFDSL 242 (411)
T ss_pred cccccc
Confidence 876654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00043 Score=36.69 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
+.++..+|.++..+|++++|+.++++++++.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.017 Score=50.50 Aligned_cols=130 Identities=22% Similarity=0.185 Sum_probs=93.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC------
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS------ 287 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------ 287 (377)
..-.++..+...-++.-++|+++. ++.+.+|..|+.-. ..-..+|.++++++++..+...+.+.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 334455667777888888898886 66677777666422 23467888888888887665543211
Q ss_pred -----------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 288 -----------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 288 -----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
.....+...+|.+..++|+.++|++.++..++... ..+...+..+|..++...+.+.++...+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 11244567799999999999999999999887532 1133678889999999999999888777
Q ss_pred HHH
Q 017109 357 ERC 359 (377)
Q Consensus 357 ~~a 359 (377)
.+.
T Consensus 319 ~kY 321 (539)
T PF04184_consen 319 AKY 321 (539)
T ss_pred HHh
Confidence 664
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.093 Score=45.65 Aligned_cols=116 Identities=13% Similarity=0.003 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH-HHHhc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH-IMESS 324 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 324 (377)
......+...+.+..+.|.++.|...+.++........ .....+....+.+....|+..+|+..++..+. .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 34566788899999999999999999998876532211 11334456678999999999999999998887 32222
Q ss_pred -------------------------cCCCChhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHh
Q 017109 325 -------------------------KGWNSLDTVIAAEGLALTLQST------GSLMEAQELFERCLEARKK 365 (377)
Q Consensus 325 -------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~ 365 (377)
........+.++..+|...... +..+++...|+++..+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 1111233567777888887777 8889999999999887654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.027 Score=51.68 Aligned_cols=169 Identities=22% Similarity=0.193 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CC--------------CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEG---FG--------------ERDPHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
..-|..+...|+++.|+..|-++-.+.+.+ .+ .+.......|-.++.-|...|+|+.|.++|.
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHH
Confidence 345666777888888888776554332211 00 1111222344556777777888888877776
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHH
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (377)
++-.. ..-...|.+.|+++.|...-.++. ++ ......|...+.-+-..|+|.+|.
T Consensus 790 e~~~~----------------~dai~my~k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 790 EADLF----------------KDAIDMYGKAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred hcchh----------------HHHHHHHhccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchhhhh
Confidence 64322 122345667778777766555432 22 445566667777777778877777
Q ss_pred HHH------HHHHHHHHHcCCCCC----------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 270 ALF------LESIRILEENGEGDS----------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 270 ~~~------~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
++| .+++.++.+.+..++ .....+...+|.-+...|+...|...|-++-+.
T Consensus 845 qlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 845 QLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred heeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 765 355666555543322 123445677888899999999998888776544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.034 Score=52.04 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=114.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...+++.+|.....+.++. +|....+...-|.+..++|+.++|..+++..-.. ++++ -.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-----~~~D---~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-----KGTD---DLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-----CCCc---hHHHHHH
Confidence 4567888999988888876 6777777777888999999999999655543322 2222 3567778
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
-.+|..+|++++|..+|+++.... |. -..+..+=.+|.+.+.|.+-.+. ++++.+..+ ..+...
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~p--k~~yyf-- 147 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFP--KRAYYF-- 147 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC--cccchH--
Confidence 899999999999999999998875 44 45555666677777777654433 333333322 233332
Q ss_pred HHHHHHHHHHhCChhHHHH-----HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAET-----VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
|.-+..+.......++... +-++..+..-...|. -...++. ...-.++..+|++++|...+.
T Consensus 148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk-~~s~aE~-~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK-IESEAEI-ILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc-cchHHHH-HHHHHHHHhcccHHHHHHHHH
Confidence 3334444444444444333 112222111111121 1111222 222346677788888888774
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+.++..+|.++...|++++|+.++++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.076 Score=44.15 Aligned_cols=210 Identities=15% Similarity=0.138 Sum_probs=136.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
+..+.-+..+..+++.+.+. ......-..-..+..+|...++|.+|+......+.-.++. +|......++..-+..
T Consensus 102 ~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~ 177 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKA 177 (411)
T ss_pred CCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHH
Confidence 34445566666666655443 1111123344568889999999999999999999888886 3566667788888999
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDY-ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
|....+..+|...+..|........-| |.. +..-..-|.++....+|.-|..||-++.+-+...+ ++.....++.
T Consensus 178 y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLK 253 (411)
T KOG1463|consen 178 YHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLK 253 (411)
T ss_pred HHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHH
Confidence 999999999999988887766555444 433 33334446667777899999999999999877765 4444444555
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST--GSLMEAQELFERCL 360 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al 360 (377)
.+-.+-...+..++--..+..=..+. ..| ....++..++..+... .+|+.|+.-|+.-+
T Consensus 254 YMlLcKIMln~~ddv~~lls~K~~l~--y~g----~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 254 YMLLCKIMLNLPDDVAALLSAKLALK--YAG----RDIDAMKAVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred HHHHHHHHhcCHHHHHHHHhhHHHHh--ccC----cchHHHHHHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 55555555666666444443222221 111 1256777777777543 45666666555433
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0049 Score=50.73 Aligned_cols=107 Identities=18% Similarity=0.098 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
...+..+..-|+-|+...+|..|...|.+.++.- .++....+..|.|.|-+....|+|..|+.-..+++.+-
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---- 149 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---- 149 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 3467888889999999999999999999999862 23445567899999999999999999999999999884
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
|....+++.-|.++....++++|..+++..+.+..
T Consensus 150 ----P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 150 ----PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ----cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 77788899999999999999999999998877643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00066 Score=35.92 Aligned_cols=31 Identities=32% Similarity=0.245 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++..+|.++..+|++++|+.++++++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999999754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.13 Score=45.56 Aligned_cols=223 Identities=15% Similarity=-0.005 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+-....-+..+...|+.+.|+.+++.+++. .. .......++.+|.++..+.+|..|...+....+..
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~--~~----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des------- 333 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIPI--RM----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES------- 333 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhcccH--HH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------
Confidence 345566777888888888889999888872 11 23446678889999999999999999988877752
Q ss_pred chhHHHHHHHHH-HHHH--------HccCHHHHHHHHHHHHHHHHHhcCCCChh--------------------HHH--H
Q 017109 203 DIRIGVAFHNLG-QFYL--------VQRKLEDACTYYERALKIKGRVLGHGNID--------------------YAD--T 251 (377)
Q Consensus 203 ~~~~~~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------------~~~--~ 251 (377)
+...+ .|..++ -++. ..|+-++|..+++...+..... +.+.|. ... -
T Consensus 334 dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P 411 (546)
T KOG3783|consen 334 DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASP 411 (546)
T ss_pred hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHHHHHHHHHHhccccccccccccch
Confidence 11111 222222 3322 2346666666666555444321 111110 111 1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..++.++..-.. -+..-..+...-.......+.....--+..+|.++..+|+...|..++...++. ......+..-
T Consensus 412 ~~El~Y~Wngf~~--~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~ 488 (546)
T KOG3783|consen 412 YYELAYFWNGFSR--MSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWA 488 (546)
T ss_pred HHHHHHHHhhccc--CChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhcccccc
Confidence 2333333322111 111112222222222222244445555677899999999999999999998866 3333344455
Q ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGS-LMEAQELFERCLEAR 363 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 363 (377)
.+.+++.+|.++..+|. ..++..++.+|-+..
T Consensus 489 ~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 489 VPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred ccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 68899999999999999 999999999997743
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00037 Score=36.84 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 230 YERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 230 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
|++++++. |....+++++|.+|...|++++|++
T Consensus 2 y~kAie~~--------P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELN--------PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHC--------CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 67888884 8889999999999999999999863
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0065 Score=50.75 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
+|..+.....+.+..+.|...|.+|++. ......+|...|.+... .++.+.|...|+.+++.+. .+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CC
Confidence 4556667777777899999999999732 33456778888888666 5666669999999998743 23
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
...+......+...|+.+.|..+|++++.... . ......++......-...|+.+....+.+++.+.++.
T Consensus 70 ---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~----~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 70 ---PDFWLEYLDFLIKLNDINNARALFERAISSLP----K-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS----C-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred ---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC----c-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 34555566778889999999999999987631 1 1113456777778888889999999999888887544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=34.33 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++..+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999999765
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=43.79 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH---hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF---DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
|+.|.+.++..... +|..++.+++-|.++..+.++ .++.+.++.++.-++.... -+|....++.++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 45566666665554 677788888888877776555 3355555555554443221 14555688999999
Q ss_pred HHHHccC----HHHHHHHHHHHHHHHH
Q 017109 216 FYLVQRK----LEDACTYYERALKIKG 238 (377)
Q Consensus 216 ~~~~~g~----~~~A~~~~~~al~~~~ 238 (377)
+|...+. ..+|..+|++|.+.++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 9887653 3455566666655554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.22 Score=46.94 Aligned_cols=192 Identities=14% Similarity=-0.005 Sum_probs=109.1
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
.+.+++..|....-+.+. .+|...-+...-|..+.+.|+.++|..+++..-.. .+..-.++..+-
T Consensus 20 ld~~qfkkal~~~~kllk-------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--------~~~D~~tLq~l~ 84 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLK-------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--------KGTDDLTLQFLQ 84 (932)
T ss_pred hhhHHHHHHHHHHHHHHH-------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--------CCCchHHHHHHH
Confidence 344555555555544443 45555666777788999999999999555433221 222456677788
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.+|..+|++++|..+|++++.. .|. -.....+=.+|.+.++|.+-.+.- +++++.. +..+. ..|
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa---~~LyK~~--pk~~y--yfW 148 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAA---LQLYKNF--PKRAY--YFW 148 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhC--Ccccc--hHH
Confidence 9999999999999999999986 222 344555666777777665533322 3333211 21222 234
Q ss_pred HHHHHHHHHcCChhhHHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEA-----LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
..++.+.......++... +.++..+..-+.++ .-........ .-.++..+|++++|.+.+..-
T Consensus 149 sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~ 216 (932)
T KOG2053|consen 149 SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEIIL-YLLILELQGKYQEALEFLAIT 216 (932)
T ss_pred HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHHH-HHHHHHhcccHHHHHHHHHHH
Confidence 444555555555554443 22233222222111 1112222221 234566789999999988543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.17 Score=42.33 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=96.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHH-hc-CCC----chh
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKILQE-SF-GPE----DIR 205 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-~~-~~~----~~~ 205 (377)
.+..|+++.|..++.++-.......+......+..+++.|......+ +++.|..+++++.++++. .. ... ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887653322223456889999999999999 999999999999999755 11 111 134
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
...++..++.+|...+.++...+ ..++++...... ++++. .+..--.+....++.+++.+.+.+++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~-~~~~~---~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY-GNKPE---VFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC-CCCcH---HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 56788899999999988764444 333344443322 22232 2322223333478888888888887764
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0031 Score=33.28 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.++..+|.+|...|++++|..+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999986
|
... |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.032 Score=35.46 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
.-....|.-++...+.++|+..++++++.. .+.+....++-.+..+|...|+|.+.+.+..+-+++.+...
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344556767778999999999999999864 44567888999999999999999999999999888877764
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.2 Score=43.41 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=110.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC---------------------CCCHhHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG---------------------ERDPHVASACNNLAELYR 176 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~ 176 (377)
.+|..++++.+++.++..+|+...|.+++++|+-..+.... ..+.....++........
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999987764311 123345567777788899
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPE-DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
+.|-+..|.++.+-.+.+ +|. +| .-+...+-....+.++|+--++.++.......+. .....+...+..
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 999999999999998887 444 44 3455566666777888877777777654421100 001123455667
Q ss_pred HHHHHHcCCh---------------hhHHHHHHHHHHHHHH
Q 017109 256 ATVLYLQGKE---------------NDSEALFLESIRILEE 281 (377)
Q Consensus 256 a~~~~~~g~~---------------~~A~~~~~~al~~~~~ 281 (377)
+.++...++- ++|...+.+|+..++.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7777777777 8999999999887543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.16 Score=46.51 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHH------
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQE-----AKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEA------ 191 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------ 191 (377)
.+.|..++......-.++-|+..|-++-.. .++. .....--...+.+-..-|+|++|++.|-.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 367777888888887888888887765432 1111 000011123345555567788777776432
Q ss_pred HHHHHHh--------------cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------------------H
Q 017109 192 IKILQES--------------FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG------------------R 239 (377)
Q Consensus 192 l~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------~ 239 (377)
+++..+. .+.++...-.++.++|..+..+-.+++|.++|.+.-.... .
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~ 846 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLAR 846 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHH
Confidence 3322221 1234566778999999999999999999999876532211 1
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHH-------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALF-------------------LESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------------------~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
...+++ ..+-.+|..+...|.-++|.+.+ .+++++.+... -+.........+.-
T Consensus 847 ~Lpe~s----~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~---l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 847 TLPEDS----ELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ---LPQVQTLIAKQAAQ 919 (1189)
T ss_pred hcCccc----chHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHH
Confidence 122222 23344555555555555555444 23444444432 22222233334445
Q ss_pred HHHhCChhHHHHHHHHH
Q 017109 301 YVKANRLTDAETVQRKI 317 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~a 317 (377)
+...++.-+|++..+++
T Consensus 920 ll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHhhcchHHHHHHhhhc
Confidence 55667777787777766
|
|
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.3 Score=42.17 Aligned_cols=195 Identities=9% Similarity=-0.057 Sum_probs=135.7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+-....+....-+.++....++..|...+.+..-.+.+. ........+...++.++.+.+..-.+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 344556777778999999999999999999887665543 234556778888899998888888888887777766654
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHHHHHhCChhHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCI-----RRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
..-+ ......-..++......|..+.|...+..++....-.++-+....+ .++...+..+ ...+.+.+.+++
T Consensus 346 y~ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 346 YSLD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred hccc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 3222 3345566778888999999999999999999876665532221110 0111111111 456778888888
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM---EAQELFERCLE 361 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 361 (377)
+++-.++.+.. .+....++.+.++..|-..|+.+ ++...|+++..
T Consensus 423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 88888887763 34456888899999999999875 44455555544
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0053 Score=33.12 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
.++..||.+-...++|++|..-|++++++.+++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999999999999999999988763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.21 Score=46.33 Aligned_cols=180 Identities=19% Similarity=0.123 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh-----cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 017109 138 KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK-----KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN 212 (377)
Q Consensus 138 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 212 (377)
+...|..+++.+.+. ....+...+|.+|..- .|.+.|+.+++.+.+...+.- ......+.+.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 356778888777654 3455666777776654 689999999999988322110 1112346788
Q ss_pred HHHHHHHcc-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHcCC
Q 017109 213 LGQFYLVQR-----KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG---KENDSEALFLESIRILEENGE 284 (377)
Q Consensus 213 la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 284 (377)
+|.+|.... ++..|..++.++.+.- ...+.+.+|.++.... +...|.++|..|.+.
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g----------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAELG----------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhcC----------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 999998853 6788999999887652 2456778888887765 567899999988764
Q ss_pred CCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-GSLMEAQELFERC 359 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 359 (377)
....+.+.++.+|.. .-+...|..++.++.+.- + +.+...++.++.-. +.++.+...+...
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-------N---PSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-------C---hhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 123446778887764 247788999999887752 1 33444444444332 6665555554443
Q ss_pred H
Q 017109 360 L 360 (377)
Q Consensus 360 l 360 (377)
.
T Consensus 424 a 424 (552)
T KOG1550|consen 424 A 424 (552)
T ss_pred H
Confidence 3
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.29 Score=42.47 Aligned_cols=156 Identities=12% Similarity=-0.008 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---------------------CCChhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG---------------------HGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~ 261 (377)
+|....++..++.++..+|+.+.|.+++++|+-..+.... ..+.....+.......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 5566789999999999999999999999999877663211 1123344566777788889
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 341 (377)
.|-+..|.++.+-.+.+.+. ++|.- +...+-....+.++++--++.++.......+. .........+..+.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~----~DP~g--~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPD----EDPLG--VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIAL 186 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCC----CCcch--hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHH
Confidence 99999999999988887322 13322 23444555566777776666666544321100 00012345566777
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHHHHhhC
Q 017109 342 TLQSTGSL---------------MEAQELFERCLEARKKLM 367 (377)
Q Consensus 342 ~~~~~g~~---------------~~A~~~~~~al~~~~~~~ 367 (377)
++...++. ++|...+.+|+...+.+.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 77777777 899999999998776543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.04 Score=41.50 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL---EDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
|+.|.+.++..... +|.....+++-|..+..+.++ .++..+++.++.-++....- +|....++.++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 45566666665554 344466777777777665443 33444444444333221110 2777889999999
Q ss_pred HHHHcC----ChhhHHHHHHHHHHHHH
Q 017109 258 VLYLQG----KENDSEALFLESIRILE 280 (377)
Q Consensus 258 ~~~~~g----~~~~A~~~~~~al~~~~ 280 (377)
++...+ +..+|..+|+++...++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 988765 34456666666665544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.48 Score=43.14 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
-..+.+-|.-+++..+|..+++.|...+....... .+...+.....++.||....+.+.|.+++++|-+..
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~--~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN--YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 34566778888899999999999999988765543 233457788899999999999999999999998763
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|........+..+....|+-++|+...........+
T Consensus 425 -~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 -RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 333556666777888899999999998887776554
|
|
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.21 Score=43.08 Aligned_cols=187 Identities=12% Similarity=-0.041 Sum_probs=132.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+-....+..+..+.++....++..|...+++..-.+.+. ........++..++.++...+....+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 344455667778888888888888888888877554332 334456778888888998888888888888888777665
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHHHcCChhhHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY-----ADTMYHLATVLYLQGKENDSEALF 272 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~ 272 (377)
.. .+...+..-..++......|..+.|...+..++....-.++-+.... +.++..-+..+ ...+.+.+.+++
T Consensus 346 y~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 346 YS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred hc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 42 23344566778899999999999999999999987754443321110 11111111111 556788889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++-..+.+.+ -+.....+.+.++..|-..|+.++=.
T Consensus 423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn 459 (482)
T KOG4322|consen 423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERN 459 (482)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHH
Confidence 99999888876 56667788888999999999986533
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.3 Score=40.10 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..-...+.-....|++.+|...+..++.. .+....+...++.+|...|+.+.|...+...-.-.. +.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-----~~ 201 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-----DK 201 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-----hh
Confidence 33455667788999999999999999987 566688899999999999999999888766322111 01
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
. .......-..+.+.....+....-+++ .. +|....+-+.++..+...|+.++|.+.+-..++.
T Consensus 202 ~--~~~l~a~i~ll~qaa~~~~~~~l~~~~-aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 202 A--AHGLQAQIELLEQAAATPEIQDLQRRL-AA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred H--HHHHHHHHHHHHHHhcCCCHHHHHHHH-Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 111111112222222222222222221 11 2666788899999999999999999988776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.61 Score=45.02 Aligned_cols=171 Identities=18% Similarity=0.095 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..+|..+|.+....|...+|++.|-++- +| ..|...-.+..+.|.|++-+.++.-+.+..++..-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id- 1169 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID- 1169 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch-
Confidence 4578889999999999999988887652 32 467777788888899999888887776554321100
Q ss_pred ChhHHHHH---------------------HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 245 NIDYADTM---------------------YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 245 ~~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
.....++ ...|.-++..|.|+.|.-+|.. ..-+..|+..+..
T Consensus 1170 -~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1170 -SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVY 1232 (1666)
T ss_pred -HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHH
Confidence 1111111 1122223333333333322221 1225567778888
Q ss_pred hCChhHHHHHHHHHHHHH--H---------------hccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 304 ANRLTDAETVQRKILHIM--E---------------SSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~--~---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.|+|..|.+..++|-... + +..|-+-.-.++-+..+...|...|-+++-+..++.++-+.+..
T Consensus 1233 LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 889988888777764321 0 11121111134556677888999999999998888887765543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.1 Score=33.26 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
...-|.-++...+.++|+..++++++.. .+.+....++..+..+|...|+|.+.+++.-+-+++.++...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3444555668889999999999999873 345667788999999999999999999999888888766543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0055 Score=31.95 Aligned_cols=31 Identities=29% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
++++.+|.++...|++++|...++++++.+|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3678899999999999999999999998544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0058 Score=52.94 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.-..+...+.-+.|+.|+..|.+|+++ +|..+..+.+.+.++...+++..|+.-+.++++. +|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cch
Confidence 334566778889999999999999998 7778888888889999999999999999999997 577
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...+|...|......+++.+|...|++...+.
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 78999999999999999999999999887774
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.9 Score=41.51 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++.+-|.-.+...+|..++++|...+...... ..+...+....+++.+|....+.|.|.+++++|-+.-
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 3455666777888899999999999999875432 1244557888999999999999999999999998774
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|...-....+..+....|.-++|+............
T Consensus 425 -~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 -RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 444455556667777789999999999888776544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.3 Score=44.46 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=56.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
++..+...|++.+|-+.|.+.=...+.. .-..-.-++..+.-+...|..++-....++-.+-..... .|.
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAl----EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---ePk--- 707 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRAL----EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---EPK--- 707 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHH----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---CcH---
Confidence 4555666666666666665432110000 000011123344445555555544444444333333221 121
Q ss_pred HHHHHHHHHHHccCHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYY------ERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
.-+..+...|+.++|+... +-++++.+++. ......+..++..+.....+.-|.+.|.+
T Consensus 708 ---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 708 ---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred ---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 2355666777777777653 33444444331 11223334444444444445545444443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.021 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.++..||.+....++|++|+.-|++++++.++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 47889999999999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0054 Score=50.73 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
..+.-.+..|.+++|++.+..++++ +|..+..+...+.++..+++...|+.-+..++++ +++.+
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa 182 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSA 182 (377)
T ss_pred HHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccc
Confidence 3455567788999999999999987 7888899999999999999999999999999987 44556
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.-|-..+.....+|++++|...+..+.++
T Consensus 183 ~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 183 KGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 77788888889999999999999988776
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.68 Score=37.95 Aligned_cols=189 Identities=9% Similarity=-0.007 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC---c-------hhHHHHHHHHHHHHHHcc--------------C
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE---D-------IRIGVAFHNLGQFYLVQR--------------K 222 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~ 222 (377)
+.+.+..++...|+..+|+.-+++=+..+....++. . ...+.=+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 345567889999999999999999888877665441 1 111222334444444322 1
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CC-C------------------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 223 LEDACTYYERALKIKGRVLG-HG-N------------------IDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~-~~-~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
|..|..+...-.+....... |+ . +.....+................++++.+|++.+...
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 23343333332333333210 11 0 0000001111111112233456688999999998887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
+ .......+...+|.-|...|++++|.++++.+....++. |. ..-...++..+..|+...|+.+..+.+.-+.
T Consensus 172 ~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-gW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 172 G--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE-GW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred c--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6 345566667789999999999999999999997766544 22 2335678888999999999998877665443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.69 Score=37.91 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC---C-------HhHHHHHHHHHHHHHHhc--------------C
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER---D-------PHVASACNNLAELYRVKK--------------A 180 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~ 180 (377)
+-+.+-.+++..|+..+|+.-+++=+.......+.. . ...+.-+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 345567889999999999999999988887775441 1 112222334455444332 1
Q ss_pred HhHHHHHHHHHHHHHHHhcC-CC-ch------------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 181 FDKAEPLYLEAIKILQESFG-PE-DI------------------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~-~~-~~------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
|..|-.+...--+..+.... |+ .+ .....+............-...++.+.+|++.+.+.
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 22333333222233333210 11 00 000000111111112233456688888888888765
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
... .........+|..|...|++++|..+++.+...+.+.+ .......++..+..|+...|+.+..+.+.-+
T Consensus 172 ~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg--W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 172 GQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG--WWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred ccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 432 55567778999999999999999999999988777654 4555667788889999999998876665443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.72 Score=37.98 Aligned_cols=161 Identities=15% Similarity=0.036 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
-..-+.-....|++.+|...+..++... +....+...++.+|...|+.+.|...+...-.-.. ..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hh
Confidence 3455667778899999999999999972 22257888999999999999999888876322211 11
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
..........++.+.....+....-.++-. .|.....-..+|..+...|++++|.+.+-..+.. ..+.
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~ 269 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLAA---------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGF 269 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccc
Confidence 111111112334444444443333333221 2333455678999999999999998887666554 3333
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+ ..+...+-.++...|.-+.+...+++
T Consensus 270 ~d---~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 270 ED---GEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cC---cHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 33 34555666777777755544444443
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.71 Score=38.45 Aligned_cols=131 Identities=13% Similarity=0.154 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 017109 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (377)
+-++-+.+.++-.++..|+ .....++.+.|..|.+.|+-+.|.+.+.+..+..-..+ ...+.......+|..|..
T Consensus 82 eki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D- 156 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLD- 156 (393)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhcc-
Confidence 3455556666666655555 66788999999999999999999999999887665554 445555556677777754
Q ss_pred CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 305 NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 305 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+--.+..+++-.+.++-++++......+|. |.......++.+|...|-.++..+.
T Consensus 157 --~~lV~~~iekak~liE~GgDWeRrNRlKvY~--Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 157 --HDLVTESIEKAKSLIEEGGDWERRNRLKVYQ--GLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred --HHHHHHHHHHHHHHHHhCCChhhhhhHHHHH--HHHHHHHHhHHHHHHHHHHHccccc
Confidence 4444455666666666655555544444444 3444556788888888877766543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=40.01 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=97.9
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHH
Q 017109 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA-TVL 259 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~ 259 (377)
++....++++.+.+.. .....++.++-..-.+..=...|...|.++-+.-.. + -.++..-| .-|
T Consensus 347 ~~~~~~~~~~ll~~~~-------~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~------~--hhVfVa~A~mEy 411 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIED-------IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT------R--HHVFVAAALMEY 411 (656)
T ss_pred hhhhHHHHHHHHhhhc-------cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC------c--chhhHHHHHHHH
Confidence 5556666666666522 222344555555555555566777777776554311 1 12222222 235
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 017109 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 339 (377)
...++..-|...|+-.++.+. +.+.... .....+...|+-..|..+|++++.. .... .....+|..+
T Consensus 412 ~cskD~~~AfrIFeLGLkkf~-----d~p~yv~---~YldfL~~lNdd~N~R~LFEr~l~s---~l~~--~ks~~Iw~r~ 478 (656)
T KOG1914|consen 412 YCSKDKETAFRIFELGLKKFG-----DSPEYVL---KYLDFLSHLNDDNNARALFERVLTS---VLSA--DKSKEIWDRM 478 (656)
T ss_pred HhcCChhHHHHHHHHHHHhcC-----CChHHHH---HHHHHHHHhCcchhHHHHHHHHHhc---cCCh--hhhHHHHHHH
Confidence 668999999999999888632 4444443 3345667789999999999998875 1111 1235677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
-..-..-|+....++.-++-...++
T Consensus 479 l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhcc
Confidence 7777788998888888777776666
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0087 Score=31.16 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+++.+|.++...|++++|+..++++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 67899999999999999999999998864
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.8 Score=37.51 Aligned_cols=136 Identities=12% Similarity=0.070 Sum_probs=86.6
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
+.-++-++-+.+.++-.+...|+ .....++.++|..|.+.++.+.+.+++.+.++-.-..+ -......+...+|.+
T Consensus 89 kkneeki~Elde~i~~~eedngE--~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~ 164 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGE--TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLI 164 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHh
Confidence 34455566666666665554444 56688999999999999999999999999887766654 334455555667777
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|..+.=.++. ++.+-.+.++-.+++......+| .|.......++.+|...+...+..+.+
T Consensus 165 y~d~~vV~e~---lE~~~~~iEkGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 165 YGDRKVVEES---LEVADDIIEKGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hccHHHHHHH---HHHHHHHHHhCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 7555444444 44444444444444333333343 344555667888888887776665443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.93 Score=38.26 Aligned_cols=165 Identities=18% Similarity=0.112 Sum_probs=108.2
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ----GKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
..+++..+...+..+-... .......++..|... .+..+|..+|+.+.+ .....+.+
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~ 113 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALF 113 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHH
Confidence 3455555555555544311 115566677776554 467888888885543 34466777
Q ss_pred HHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHHHH
Q 017109 170 NLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-------KLEDACTYYERALKIKG 238 (377)
Q Consensus 170 ~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~ 238 (377)
.||.+|.. ..+..+|..+|+++.+. + ++.-..+...++..|..-+ +...|...|.++....
T Consensus 114 ~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 114 NLGLMYANGRGVPLDLVKALKYYEKAAKL-----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred hHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 89998887 45899999999999886 2 2211345777888777642 2236777777766552
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC
Q 017109 239 RVLGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN 305 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (377)
...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 186 ---------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 ---------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred ---------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 35677888887765 34788999999999875 22 44566777 666555
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.1 Score=38.51 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 218 (377)
.+.-+.++++|++. +|.....+..+-.+.....+.++..+-+++++.. .+..+.+...|...-....
T Consensus 47 ~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHh
Confidence 34566777777765 3444445555555555666777777777777776 3445555555555545445
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 219 VQRKLEDACTYYERALKIKGRVLGHG----------NIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
..-.++.....|.+++.......... ......++..++......|..+.|+..++-.+++
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 55678899999999998876553332 1234566777888889999999999999999887
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.5 Score=39.17 Aligned_cols=181 Identities=14% Similarity=0.037 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL-------EDACTYYERALKIKG 238 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 238 (377)
.....+|+.++..|+|+-|...|+.+.+-+... ......+.+.-..|.+....+.. ++...+++.++..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 456779999999999999999999988865431 12334455666666666666643 477788888888776
Q ss_pred HhcC---CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHH--HHhCChhHHHH
Q 017109 239 RVLG---HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE-ENGEGDSMTCIRRLRYLAQTY--VKANRLTDAET 312 (377)
Q Consensus 239 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~ 312 (377)
+... ........+....+.++...|.+.+|...+-+.....- +.. .....+..+..+|.++ ...+....-..
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l--~~~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL--RPFGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh--hhHhhHHHHHHHHHhhcccccCCCCccch
Confidence 6311 11124456777788888899998888877766654421 110 0111344455556665 11101000000
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
. ....+.-+..-|.-|...|+...|..+|.+++.++..
T Consensus 365 r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 365 R---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred h---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0 1122334444568899999999999999999998874
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.96 Score=36.70 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+..++.+....|+|++...+.++++... ......=.+.++.+|-. .|....+...+......... ..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~---~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN---KGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc---cchh
Confidence 5678899999999999999999999871 11122233334444421 23333344333332222211 1011
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHHHh-----C-----ChhHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG---DSMTCIRRLRYLAQTYVKA-----N-----RLTDAETV 313 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 313 (377)
... .+..-|.. .=-++=...+..++.+......+ +....+..+...|..|.-. | -.+.|...
T Consensus 74 ~~~----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 KQV----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 111 11111110 01122334445555554443211 1112222233344444321 1 23789999
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhh
Q 017109 314 QRKILHIMESSKGWNSLDTVIAAEGLALTL-QSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 314 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
|++|+++......+.+|.......+.+..| .-.|+.++|....+++++-.-..
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999988899998777777777766 55899999999999988876543
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.26 Score=33.94 Aligned_cols=101 Identities=15% Similarity=0.068 Sum_probs=58.3
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ----RKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
.+.-++..|++-+|++..+..+....+ +......+..-|.++..+ .+.+-=..++.-+++.+.+...- .|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 456788999999999999999876332 222235566667666544 34443334444444443322111 25
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
..+..++.+|.-+.....|+++..-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566677777665555555555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.64 Score=42.93 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHH-----HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHH------
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKI-----LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERA------ 233 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------ 233 (377)
.+.+..++..-...-.++.|+..|-+.-.. .++... ...--...+.+-..-|+|++|++.|-.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~-----i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRT-----IHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhh-----hhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 345666677666666777777766554321 111100 0001122344444456777776665432
Q ss_pred HHHHHH------------h--cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 234 LKIKGR------------V--LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 234 l~~~~~------------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+++..+ . .+.++.....++.++|..+..+..+++|.++|.+.-
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222221 1 123344556788888888888888888888887653
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.4 Score=36.85 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 017109 183 KAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ 262 (377)
Q Consensus 183 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (377)
+-++-+.+.++-.++..| ......++.+.|..|.+.|+-+.|.+.+++..+-.-.++.. .+.......+|..|.
T Consensus 82 eki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~-- 155 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYL-- 155 (393)
T ss_pred HHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhc--
Confidence 334445555555555444 34557899999999999999999999999887665433222 444555566666664
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 263 GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
+.+--.+..+++-.+.++-+..+..+.. -..-|.......++.+|-.+|-.++..+.+.
T Consensus 156 -D~~lV~~~iekak~liE~GgDWeRrNRl--KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 156 -DHDLVTESIEKAKSLIEEGGDWERRNRL--KVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred -cHHHHHHHHHHHHHHHHhCCChhhhhhH--HHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 4444555566666666665433333333 3345667777889999999998888765443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2 Score=38.63 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhc
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR---KLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 241 (377)
...+...+.++...|+...|...-.++.++++.............++.++..-...- .++....++++.+.+..
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~--- 362 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED--- 362 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc---
Confidence 344455667777777766655555555555443321111112233333333322222 25556666666666542
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
....-++.++-..-.+..-...|...|.++.+.-. .+....+...+-. |...++..-|...|+-.+..+
T Consensus 363 ----~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 363 ----IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF 431 (656)
T ss_pred ----cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc
Confidence 22233444555555555556777777777765311 1111222222222 446789999999999988775
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. +.|. .-......+...++-..|..+|++++..
T Consensus 432 ~-----d~p~---yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 432 G-----DSPE---YVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred C-----CChH---HHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 2 2343 3334445667778888888888887764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2 Score=41.74 Aligned_cols=123 Identities=17% Similarity=0.105 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.+|..+|......|...+|++.|-++- .+..|.....+..+.|.|++-++++.-+.+..++....
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad-------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id-- 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD-------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID-- 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC-------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--
Confidence 678999999999999999999887642 23456777788888999999999988877665443211
Q ss_pred HHHHHHH---------------------HHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 288 MTCIRRL---------------------RYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 288 ~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
.....++ ...|.-++..|.|+.|.-+|.. ..-+..|+..+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHHH
Confidence 1111111 1223333344444444333332 34455677778888
Q ss_pred CCHHHHHHHHHHHHH
Q 017109 347 GSLMEAQELFERCLE 361 (377)
Q Consensus 347 g~~~~A~~~~~~al~ 361 (377)
|+|..|...-++|-.
T Consensus 1234 geyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHHHHHHHhhhccc
Confidence 888888877777644
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.38 Score=35.78 Aligned_cols=88 Identities=11% Similarity=-0.000 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
.....+..+..+-...++.+++...+.-..-+. |.....-..-|.+++..|++.+|+..++.+..-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------ 73 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEER------ 73 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence 345667777778888889999988887655553 777788888999999999999999999996542
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChh
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLT 308 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~ 308 (377)
.+....+.-.++.|+..+|+.+
T Consensus 74 --~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 --APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --CCCChHHHHHHHHHHHHcCChH
Confidence 2333334455788888888763
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.58 Score=32.32 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=58.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..++..|++-+|++..+..+.... ++......+..-|.++..+ .+.+-=..++.-+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 46678899999999999999887632 1222235556667766554 3444444555555555444321 144
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
..+..++.+|.-+.....|+++..-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4455666666555444444444444444443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.012 Score=51.02 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
-+-+.-....+.|+.|+..|.+++++ ++..+..+.+.+..+.+.+++..|+.-+.++++.. |..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chh
Confidence 34566677788999999999999998 45556778888999999999999999999999984 788
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
..+|..-|......+++.+|...|+....+.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 8899999999999999999999999887763
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.49 Score=35.22 Aligned_cols=87 Identities=15% Similarity=-0.072 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....+..+..+-...++.+++...+....-+ .|.....-..-|.++...|++.+|+..++....-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------ 73 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------ 73 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence 35566777788888889999998888766655 7888888889999999999999999999996553
Q ss_pred CCchhHHHHHHHHHHHHHHccCH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~ 223 (377)
.+....+--.++.|+..+|+.
T Consensus 74 --~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 --APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred --CCCChHHHHHHHHHHHHcCCh
Confidence 333345666778888887775
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=2 Score=37.07 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=97.3
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHG--NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
.++.++++.+|..+-+..+.... ..... +...+..++.+..+|...|+...-...+...+....-.. +....+..
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh--d~e~qavL 211 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH--DEEGQAVL 211 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC--cchhHHHH
Confidence 34456889999888777654421 11110 122356788888899999997777777766665543322 44556666
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+.+-+.|...+.|+.|.....++.-- .. ..+.+.+..++.+|.+..-+++|..|.+++-+|+...+
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 777888999999999888777664311 11 11224588889999999999999999999999988544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.2 Score=34.53 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
.....+.....+|..|. ..+.++++..+.+++++.. +++...+.++..|+.++..+|+++.|--
T Consensus 136 ~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 136 PELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 34445677888888776 6789999999999999973 3324457889999999999999998853
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=94.98 E-value=5.1 Score=41.26 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC--------------------
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA-------------------- 180 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 180 (377)
...+....+|..+...|.+.+|+..|.+|++..+.. .|.-..+.++..++.+..-.+.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 456778889999999999999999999999999887 6666777777766654332211
Q ss_pred ------------------------------------HhHHHHHHHHHHHHHHHhcC---C--CchhHHHHHHHHHHHHHH
Q 017109 181 ------------------------------------FDKAEPLYLEAIKILQESFG---P--EDIRIGVAFHNLGQFYLV 219 (377)
Q Consensus 181 ------------------------------------~~~A~~~~~~al~~~~~~~~---~--~~~~~~~~~~~la~~~~~ 219 (377)
...-.+.+++++..+.+... + .......+....+..+..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 11122345555555554421 0 112345566677777777
Q ss_pred cc--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 220 QR--------------------KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 220 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.. .-.++..++.+++...-.... ..+....+..+|.+|...|-..++--+++.++...
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~--~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLS--VEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCC--HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 677888888888876543222 25668899999999999999988888888877665
Q ss_pred H
Q 017109 280 E 280 (377)
Q Consensus 280 ~ 280 (377)
-
T Consensus 476 ~ 476 (1185)
T PF08626_consen 476 V 476 (1185)
T ss_pred c
Confidence 3
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.1 Score=38.74 Aligned_cols=133 Identities=22% Similarity=0.187 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQ-----GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-----AFDKAEPLYLEAI 192 (377)
Q Consensus 123 ~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al 192 (377)
......+|.+|..- .|.+.|+.+++.+.+...+. .......+...+|.+|.... ++..|..++.++.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~---a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA---ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH---HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 34556677776654 58999999999998731111 01113447788999998853 6778999999888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCh
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQR---KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ----GKE 265 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~ 265 (377)
+. ..+ .+.+.+|.++.... ++..|.++|..|... ....+...++.+|..- -+.
T Consensus 321 ~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 321 EL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred hc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCcCCCH
Confidence 76 232 57788888888765 567899999888765 2356777888877653 467
Q ss_pred hhHHHHHHHHHHH
Q 017109 266 NDSEALFLESIRI 278 (377)
Q Consensus 266 ~~A~~~~~~al~~ 278 (377)
..|..++.++.+.
T Consensus 381 ~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHHc
Confidence 8899999998875
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.1 Score=36.11 Aligned_cols=181 Identities=23% Similarity=0.208 Sum_probs=119.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
....+++..+...+.++-.. . . ......++.+|... .+..+|..+|+.+.+. .. ..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~------~-~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-------g~---~~ 110 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL------G-D---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-------GL---AE 110 (292)
T ss_pred ccccccHHHHHHHHHHhhhc------C-C---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-------cc---HH
Confidence 34567788888888877652 1 1 25666777777653 3577788888855443 12 45
Q ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-------ChhhHHHHHHHHHH
Q 017109 209 AFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-------KENDSEALFLESIR 277 (377)
Q Consensus 209 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~ 277 (377)
+.+.+|.+|.. ..++.+|..+|+++.+.- . +.-..+...++..|..-+ +...|...|.++-.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-----~--~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~ 183 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-----N--VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE 183 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----C--hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence 77889999887 458999999999998763 1 211344677777776642 22367777777765
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC------
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG------ 347 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g------ 347 (377)
.. ...+...+|.+|.. ..++.+|..+|.++.+.- + ......++ ++...|
T Consensus 184 ~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 184 LG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred hc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcCCCchhh
Confidence 42 33456778877764 347899999999987651 1 55666777 555555
Q ss_pred ---------CHHHHHHHHHHHHH
Q 017109 348 ---------SLMEAQELFERCLE 361 (377)
Q Consensus 348 ---------~~~~A~~~~~~al~ 361 (377)
+...|..++..+..
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHH
Confidence 66677777766544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.45 Score=27.99 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
++++.+|..+...|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46788999999999999999999999998
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.73 E-value=2 Score=35.33 Aligned_cols=136 Identities=18% Similarity=0.107 Sum_probs=85.0
Q ss_pred CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 180 AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 180 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
.-++-++-+.+.++-.+...| ......++.++|..|.+.++.+.+.+...+.+.-.-.++-. .+..-+...+|.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K--iDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK--IDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHhh
Confidence 334555556555555444432 34567899999999999999999999999988765443222 33444555666666
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
..+.-.++.+ +.+-.+.++-+ +....-..-...|...+...++.+|-.++...+..+.+.
T Consensus 166 ~d~~vV~e~l---E~~~~~iEkGg--DWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 166 GDRKVVEESL---EVADDIIEKGG--DWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred ccHHHHHHHH---HHHHHHHHhCC--CHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 5444344444 44444444433 333333333445677777889999998888877665443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.4 Score=34.27 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 017109 266 NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS 345 (377)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 345 (377)
++|...|-++-. ......+.....+|..|. ..+.++|+.++.++++...... .-.++++..|+.++..
T Consensus 123 ~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~----~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 123 QEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD----NFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHH
Confidence 556555544322 123345666778888887 5788999999999999864431 2236888999999999
Q ss_pred cCCHHHHHH
Q 017109 346 TGSLMEAQE 354 (377)
Q Consensus 346 ~g~~~~A~~ 354 (377)
+|+++.|.-
T Consensus 191 ~~~~e~AYi 199 (203)
T PF11207_consen 191 LKNYEQAYI 199 (203)
T ss_pred hcchhhhhh
Confidence 999998854
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.024 Score=47.09 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=73.8
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
.+..|.+++|++.+..++.+. |..+..+...+.++.+.++...|+.-+..++++- +....-+-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln--------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--------~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN--------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--------PDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhcccccccccC--------CchhhhcccccceeeeccCCchhhhhhhhhhccC--------cccccccch
Confidence 345677999999999999884 7778889999999999999999999999999873 333344556
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.+.....+|++.+|...+..+.++
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhc
Confidence 778888899999999999998876
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.095 Score=26.42 Aligned_cols=29 Identities=41% Similarity=0.685 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.++..+|.++..+|++++|...++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36788999999999999999999999875
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=94.20 E-value=3.9 Score=36.52 Aligned_cols=182 Identities=13% Similarity=-0.032 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH-------hHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF-------DKAEPLYLEAIKILQ 196 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 196 (377)
.....+|..++..|+|+-|...|+.+.+-+... ......+.+....|.+....+.. ++...+++.++..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 456779999999999999999999998765322 11233456666667666666643 377788888888777
Q ss_pred HhcC---CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHH--HHcCChhhHHH
Q 017109 197 ESFG---PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG-RVLGHGNIDYADTMYHLATVL--YLQGKENDSEA 270 (377)
Q Consensus 197 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~ 270 (377)
+... ........+....+.++...|.+.+|...+-+.....- +...+ ...+..+-..|.++ ........-..
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCccch
Confidence 7311 12234556777888888899998888877766655421 00000 01233344444444 11100000000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
.....+.-+..-|.-|...|+...|..+|.+++..+...
T Consensus 365 ---------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 365 ---------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 011222233445778899999999999999999987643
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.4 Score=28.20 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
+.++.+|..+...|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46788999999999999999999999998
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.083 Score=26.66 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.++..+|.++...|++++|...++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999999875
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.9 Score=32.79 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 187 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
.|+.|.++++....++ ......+.+|..+.. .++...|++.+..+-+. ..+.+..++|.++..
T Consensus 50 nF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~ 117 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWN 117 (248)
T ss_pred HHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhcc
Confidence 3444445444443222 224556666665542 45788888888887653 234566677777654
Q ss_pred cC-----C--hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH------------------------hCChhHH
Q 017109 262 QG-----K--ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK------------------------ANRLTDA 310 (377)
Q Consensus 262 ~g-----~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------------------------~g~~~~A 310 (377)
.. + ..+|++++.++-++ . ...+...|...|.. ..+.+.|
T Consensus 118 g~~~r~~dpd~~Ka~~y~traCdl-------~---~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka 187 (248)
T KOG4014|consen 118 GEKDRKADPDSEKAERYMTRACDL-------E---DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA 187 (248)
T ss_pred CcCCccCCCCcHHHHHHHHHhccC-------C---CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence 32 2 55777777776654 1 11223333333332 2344555
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhhCCCCC
Q 017109 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST----GSLMEAQELFERCLEARKKLMPQDH 371 (377)
Q Consensus 311 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~ 371 (377)
..+--++-++ ..+.+..+++++|..- .+.++|..+-.++.++.+++...+.
T Consensus 188 ~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~~~ 242 (248)
T KOG4014|consen 188 LQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKNDT 242 (248)
T ss_pred HHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5555554443 2256777888888643 4678999999999999988765443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=4.5 Score=36.44 Aligned_cols=185 Identities=12% Similarity=-0.004 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH-HHH--------HHhcCHhHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA-ELY--------RVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~ 193 (377)
.-.++.+|.++....+|..|-..+....+.. ...--.|..++ -++ ...|+-++|..+.+...+
T Consensus 303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des--------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~ 374 (546)
T KOG3783|consen 303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES--------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE 374 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh--------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence 3567788999999999999999988887762 22222222222 222 223466666666666555
Q ss_pred HHHHhcCCCchh----------------------HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 194 ILQESFGPEDIR----------------------IGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 194 ~~~~~~~~~~~~----------------------~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
..... +.+.|. .+..+..++..+..-. ...+.. ++..........+..+..
T Consensus 375 l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~ 449 (546)
T KOG3783|consen 375 LLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEG 449 (546)
T ss_pred HHHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHH
Confidence 54431 111110 0001233333322211 112222 222211111112334445
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR-LTDAETVQRKILHIM 321 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 321 (377)
--+..+|.++...|+...|..++...++.. .....+....+.+++.+|.++..+|. ..++..++.+|-+..
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 667788999999999999999999888652 22233566777889999999999999 999999999987764
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.1 Score=46.74 Aligned_cols=98 Identities=24% Similarity=0.276 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+++..|..+...|+...|+.++..|+... .........+|+.+....|-...|-.++.+++.+.- ..|
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep 676 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP 676 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc
Confidence 34455666778899999999999998652 122344567899999999999999999999999841 223
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..++.+|..+....+.+.|++.+++|++.-
T Consensus 677 ---l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 677 ---LTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred ---hHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 567889999999999999999999999874
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.3 Score=38.14 Aligned_cols=107 Identities=10% Similarity=-0.013 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh--
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES-- 323 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 323 (377)
..+-.++..+|.-|...|+++.|++.|-++...+... ...+..+.++-.+-...|+|..-..+..++......
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 3456788999999999999999999999988876543 356667778888888899998888877777655210
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
.....-+....+...++ ....+++..|.+++-.+
T Consensus 222 ~~~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence 00111121244444444 44555888888777543
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.6 Score=37.74 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV-- 240 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 240 (377)
..-.++..+|.-|...|+++.|++.|-++-+.+.+ .......+.++-.+-..+|+|..-..+..++.......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 45678899999999999999999999998887654 34557788888899999999998888888877662110
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
....-+....+.. |.+....++|..|..++-.+
T Consensus 223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 0000122233444 44455556888888877654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.5 Score=36.33 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=66.4
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+..-..+.+.++-.+|...++++.|+.+.+..+.+ .|....-+...|.+|.+.|.+..|..-++..++.
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--- 244 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--- 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---
Confidence 33445788888999999999999999999999988 5666677788999999999999999999999987
Q ss_pred hcCCCchhHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHN 212 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~ 212 (377)
.|++|....+...
T Consensus 245 --~P~dp~a~~ik~q 257 (269)
T PRK10941 245 --CPEDPISEMIRAQ 257 (269)
T ss_pred --CCCchhHHHHHHH
Confidence 4455544443333
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.6 Score=30.65 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-------TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+..+|....+.+++-.++-+|++|+.+.++.......+ .+....+||..+..+|+.+-.++|++-|-+..-.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45688889999999999999999999987763222111 34567789999999999999999999887766665
Q ss_pred CC
Q 017109 367 MP 368 (377)
Q Consensus 367 ~~ 368 (377)
.+
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.79 E-value=3.5 Score=34.47 Aligned_cols=112 Identities=10% Similarity=0.030 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
.....+...+|.+|.+.++|..|...+.-. ..-......+.......+..+|++|...++..+|..+..++--.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 345678889999999999999987766432 111000001113345677889999999999999999998875443332
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
.+...........|++.-..+++-+|...|-+..
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444445566788888888888776665544
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.75 E-value=4.2 Score=35.26 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=101.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
..++...++.+|...-...+.-..-.. ..-+-..+..++.+..+|...|+...-...+..-+....- +.+....+..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--rhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL--RHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--cCcchhHHHH
Confidence 334556888998888777664321110 0002234678888999999999977766666666554322 3345556777
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.+.+-..|...+.|+.|.....++.--- ...+...+..++.+|.+..-+++|..|.+++-+|+...++
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 8888899999999999988877654211 1112356788889999999999999999999999987554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.4 Score=29.53 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=24.9
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+|....+.+.+|..+...|++++|++.+-.++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6667788888888888888888888777776654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.63 E-value=4.8 Score=35.54 Aligned_cols=191 Identities=13% Similarity=0.011 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...+..-|.++..++++.+|.+.+.+..+-.... .....-.++.+.-...+-+++.+.- +..+...++..
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAffl~nld~M----e~~l~~l~~~~--- 75 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFFLNNLDLM----EKQLMELRQQF--- 75 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHHHhhHHHH----HHHHHHHHHhc---
Confidence 3455677899999999999999999988764321 0111113333333333334444443 33333333332
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC---C----HHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD---S----MTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
+.........|.+..+.+++++|++.+..-....+....+- + ......-...+.++...|++.++...+++.
T Consensus 76 -~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 76 -GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred -CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 23344556678888999999999988766554433322110 0 011112234678889999999999999998
Q ss_pred HHHHHhc-cCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhh
Q 017109 318 LHIMESS-KGWNSLDTVIAAEGLALTLQ----STGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 318 l~~~~~~-~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+...-+. ...+....-.+...+|+.|. .....+-+..+|+.++-..+++
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 8765332 22222222233334555553 2233444555555554444433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.58 E-value=4.3 Score=35.41 Aligned_cols=109 Identities=15% Similarity=0.024 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC------Hh----HHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD------PH----VASACNNLAELYRVKKAFDKAEPLYLEAI 192 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al 192 (377)
.++-..-|..++.+++|..|..-|..+++++.+..--.. .+ ...+...|..||..+++.+-|+.+..+.+
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 344445567778889999999999999998876421111 11 12345578999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.+ +|....-+...|.++....+|.+|...+.-+.-++.-
T Consensus 256 ~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl 294 (569)
T PF15015_consen 256 NL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL 294 (569)
T ss_pred hc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87 4555677788899999999999998888777666543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.1 Score=25.36 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357789999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.12 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.7 Score=39.46 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=75.3
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
++.....+..-+..+..+|+..+|..++..++...... ..-.+...+|.++.+.|...+|--++..|+.-.
T Consensus 209 ~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA--- 279 (886)
T KOG4507|consen 209 NTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH------NKDIALLSLATVLHRAGFSADAAVILHAALDDA--- 279 (886)
T ss_pred CchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc------cccchhhhHHHHHHHcccccchhheeehhccCC---
Confidence 33344333333444456899999999999999874332 123467889999999999999988887666554
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+....-++.++.++...|++......|..+.+.
T Consensus 280 -----~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 -----DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred -----ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 333444778888999999988888888877664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.2 Score=32.67 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
...+..+...-...++.+++...+...--+. |.....-..-|.+++..|++++|+..++...+-
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------- 73 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLIARGNYDEAARILRELLSS-------- 73 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------
Confidence 3445555555566889999888876654443 666777788899999999999999999987652
Q ss_pred CHHHHHHHHHHHHHHHHhCCh
Q 017109 287 SMTCIRRLRYLAQTYVKANRL 307 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~ 307 (377)
.+......-.++.|+..+|+.
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCCchHHHHHHHHHHHhcCCh
Confidence 112223334567777777775
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.08 E-value=6.9 Score=35.78 Aligned_cols=182 Identities=12% Similarity=0.017 Sum_probs=126.6
Q ss_pred cccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 115 VSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
..+..+.....|..-...-...|+++...-.|++++-- -......+...+......|+.+-|...+..+.++
T Consensus 289 vkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 289 VKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred cCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 34555666677777778888899999999999999865 3455667777888777889999999888888887
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 195 LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
..+ .. ..+...-+..-...|+++.|...+++...-. |....+-..-......+|..+.+.. +..
T Consensus 361 ~~k----~~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~ 424 (577)
T KOG1258|consen 361 HVK----KT---PIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNE 424 (577)
T ss_pred cCC----CC---cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHH
Confidence 433 22 3566667778888999999999999987765 5555555566667778888888775 233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHH
Q 017109 275 SIRILEENGEGDSMTCIRRLRYLAQT-YVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 275 al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 321 (377)
.+...... ..+.......+...+.. +.-.++.+.|...+.++.++.
T Consensus 425 l~s~~~~~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 425 LYSSIYEG-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred HHHHhccc-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 33222221 11222333444555554 344678888888888888764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.84 E-value=4.4 Score=38.57 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 188 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|.-|+.++++. +.+......++...|..++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 34445555544 33455667888999999999999999999999988764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.83 E-value=5.2 Score=35.97 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV-ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
......|+++++....... ++ -|.. ..-...++..+..+|-++.|+...+.- ..
T Consensus 269 k~av~~~d~~~v~~~i~~~-~l--------l~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~ 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NL--------LPNIPKDQGQSIARFLEKKGYPELALQFVTDP----------------DH 323 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HT--------GGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HH
T ss_pred HHHHHcCChhhhhhhhhhh-hh--------cccCChhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HH
Confidence 3446678888877766321 11 1111 223456667777778777766553221 12
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.+ .+..+.|+.+.|.+..++ ......|..||.....+|+++-|.++|+++-
T Consensus 324 rF---eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 324 RF---ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HH---HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred Hh---HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 22 233456666666554432 1223467777888888888877777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.3 Score=37.33 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
++..|..++.-.|+|..|++.++..--........-.+-...+++.+|.+|..+++|.+|+..|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567789999999999998876542211112222234456789999999999999999999999998776554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.9 Score=31.69 Aligned_cols=86 Identities=8% Similarity=-0.091 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....+..+...-...++.+++...+...--+ .|.....-..-|.++...|++++|+..++...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 3445555556666688999998887766555 6777778888899999999999999999887763
Q ss_pred CchhHHHHHHHHHHHHHHccCH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~ 223 (377)
.+......-.++.|+..+|+.
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCCh
Confidence 222234555667777777764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.57 E-value=6.8 Score=34.38 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG---HGNIDYADTMYHLATVLYLQGK---ENDSEALFLESIRIL 279 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 279 (377)
.+..++..|........|++|+.++-.|-+.+-.... +.-...+..-..+.++|+...+ .++|..-+..+-+-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3456677788888889999999888877666532210 0011223334456677777655 456766666665555
Q ss_pred HHcCC-----------CCCHHH---HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH-----
Q 017109 280 EENGE-----------GDSMTC---IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA----- 340 (377)
Q Consensus 280 ~~~~~-----------~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la----- 340 (377)
....+ +..|.. ...+..-|.+.+.+|+-++|.++++.+...+.+..-++.. ...+..+|
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~--lsllv~mGfeesd 319 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDET--LSLLVGMGFEESD 319 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchH--HHHHHHcCCCchH
Confidence 54433 233333 3344556889999999999999999999887665444332 22222221
Q ss_pred -H--HHHHcCCHHHHHHHHHH
Q 017109 341 -L--TLQSTGSLMEAQELFER 358 (377)
Q Consensus 341 -~--~~~~~g~~~~A~~~~~~ 358 (377)
+ +-...|+.+.|..++.+
T Consensus 320 aRlaLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 320 ARLALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHHHHHhccccHHHHHHHHHH
Confidence 1 12234777777777643
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.9 Score=35.48 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..+...+..|...|.+.+|+++.++++.+ +|.....+..+..++...|+--.+.+.|++.-+..+...|-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34556688899999999999999999987 8888889999999999999999999999998887776665443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.48 E-value=6.3 Score=33.82 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=93.8
Q ss_pred CHhHHHHHHHHHHHHHHhcC------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKA------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACT 228 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 228 (377)
+|....++..+.......-. .+.-+.++++|++. .+++..+...+... ..+..+.++..+
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~~L~l~~l~~---~~~~~~~~~l~~ 86 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSERLLLGYLEE---GEKVWDSEKLAK 86 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH---HHHhCCHHHHHH
Confidence 67777777776655444322 34555667777765 34555444444443 345556677677
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHH
Q 017109 229 YYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD----------SMTCIRRLRYLA 298 (377)
Q Consensus 229 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la 298 (377)
-+++++... ++.+..-..|...-......-.+++....|.+++.......... ......++..+.
T Consensus 87 ~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 87 KWEELLFKN-----PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 777777663 22343333343333333445567899999999988776654322 234556677788
Q ss_pred HHHHHhCChhHHHHHHHHHHHHH
Q 017109 299 QTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
......|..+.|+..++-.+++.
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHH
Confidence 88889999999999999998874
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=92.43 E-value=10 Score=39.14 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc----C----------------
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR----K---------------- 222 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~---------------- 222 (377)
...+....+|..+...|++.+|+..|..|+...+.. .|....+.++-.++.+..-.+ +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 346677789999999999999999999999998875 345555555555544332110 0
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhc---CCCCh--hHHHHHHHHHHHHHH
Q 017109 223 ------------------------------------LEDACTYYERALKIKGRVL---GHGNI--DYADTMYHLATVLYL 261 (377)
Q Consensus 223 ------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~--~~~~~~~~la~~~~~ 261 (377)
...=.+.+++++..+.+.. .+..| -...+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 1111234455555554432 11112 234566667777776
Q ss_pred cC--------------------ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 262 QG--------------------KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 262 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.. .-.++...+.+++....... +.......+..+|.+|...|-..++.=+++.++...
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 66 67778888888887644322 355677889999999999998877766666555443
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.19 E-value=9.8 Score=35.35 Aligned_cols=131 Identities=14% Similarity=0.063 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH--HHHHHhhCCCCCHhH-HHHHH-------------HHHHHHHHhcCHhHHHHHH--
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSA--LQEAKEGFGERDPHV-ASACN-------------NLAELYRVKKAFDKAEPLY-- 188 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~~~~~-~~~~~-------------~la~~~~~~g~~~~A~~~~-- 188 (377)
...+.++...|.-..|+++|... .+..++..+..++.. -.... ..+..+...|+.++|+...
T Consensus 649 ~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d 728 (1081)
T KOG1538|consen 649 HEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGD 728 (1081)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhc
Confidence 34567777788888888877643 334444333322221 11111 2345556666666666542
Q ss_pred ----HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 017109 189 ----LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264 (377)
Q Consensus 189 ----~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (377)
+-++++.++. +......+..++..+.....+.-|.+.|++.-+. -.+..++...++
T Consensus 729 ~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------------ksiVqlHve~~~ 788 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------------KSLVQLHVETQR 788 (1081)
T ss_pred ccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------------HHHhhheeeccc
Confidence 3334443333 1111233444455555555555555555443222 123455666777
Q ss_pred hhhHHHHHHHHHH
Q 017109 265 ENDSEALFLESIR 277 (377)
Q Consensus 265 ~~~A~~~~~~al~ 277 (377)
+++|..+.++--+
T Consensus 789 W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 789 WDEAFALAEKHPE 801 (1081)
T ss_pred chHhHhhhhhCcc
Confidence 7777766655433
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.9 Score=42.39 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=86.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 213 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
....+...+.|+.|+..|++....+ |....-..+.+..|.....+-.-..-.+.+.+|+..++... +.+....
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 553 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAPL 553 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCch
Confidence 4455666677777777777765554 22233456777777777655433333366667776666653 2223333
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHHHHHhhCC
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA-LTLQST-GSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 368 (377)
-|...|.+|..+|++++-+++|.-+++.+ +.||........+. +++... .+...|....--++.+.++...
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 46678889999999999999999999876 34565444333322 222221 2334555666666665554433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.6 Score=34.90 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..++..+...|+++.+...+++.+.. +|..-..+..+-..|...|+...|+..|++.-+....-.|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4567788899999999999999999999987 78888899999999999999999999999998865554454
Q ss_pred Cch
Q 017109 202 EDI 204 (377)
Q Consensus 202 ~~~ 204 (377)
+..
T Consensus 224 ~P~ 226 (280)
T COG3629 224 DPA 226 (280)
T ss_pred Ccc
Confidence 443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.07 E-value=6.2 Score=32.78 Aligned_cols=74 Identities=23% Similarity=0.143 Sum_probs=61.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
.....++..++..+...|+++.+...+++.+.. +|..-..+..+-..|...|+...|+..|++.-.....-.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edl 221 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEEL 221 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhc
Confidence 356788999999999999999999999999887 444457889999999999999999999999887654433
Q ss_pred CC
Q 017109 242 GH 243 (377)
Q Consensus 242 ~~ 243 (377)
+.
T Consensus 222 gi 223 (280)
T COG3629 222 GI 223 (280)
T ss_pred CC
Confidence 43
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.04 E-value=6.5 Score=32.96 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
..+.+...||.+|.+.+++..|-..+.-.-.- ......+.......+..+|++|...++..+|..+..++--.....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~-tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPLD-TGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc-cchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 45677889999999999998887765432110 000001223445667889999999999999999998876554333
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 327 WNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 327 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
.+..-....-...|+++-..+++-+|...|-+..
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234445556788888888877766665443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=91.94 E-value=8.1 Score=33.83 Aligned_cols=111 Identities=15% Similarity=0.029 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC------hh----HHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN------ID----YADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.+-..-|..++++++|..|..-|+.+++++.+...... .+ ...+...+..+|...++.+-|+....+.+-
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34445566778889999999999999998865322111 11 123456788999999999999999998887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
+ +|....-+..-|.++..+.+|.+|.+.+--+.-++.-..|
T Consensus 257 l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~ 297 (569)
T PF15015_consen 257 L--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG 297 (569)
T ss_pred c--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 3444455667888999999999998887776666554443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.88 E-value=14 Score=36.62 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=79.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
+...+.....|+.|+..|++....+ ++...--++.+.+|.....+-.-..-.+.+.+|+..+++..+ .+....
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 553 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPL 553 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCch
Confidence 4556667777788888877766542 223344677788888777665444444778888888877754 333345
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
-|...|.+|..+|++++-++++.-|++.+ +.||......
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 592 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLR 592 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHH
Confidence 68888999999999999999999999886 4456555443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.72 Score=25.89 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
+.++..|...|+.+.|.+.+++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.30 E-value=5.2 Score=30.36 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=89.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH--HH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI--GV 208 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~ 208 (377)
.-....|..++|+..|...-+. .....-.-+....+.+....|+...|...|..+-... ..|.. -.
T Consensus 66 L~lA~~~k~d~Alaaf~~lekt------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ 133 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKT------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDL 133 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHH
Confidence 3345567778887777655432 1112234566788999999999999999999876531 12222 23
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+...-+.++...|.|+.-.... +.+.++.+|....+.-.||..-.+.|++..|...|.+...
T Consensus 134 ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4556677788888887654433 3334566677788888999999999999999999998765
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=91.15 E-value=7.2 Score=31.71 Aligned_cols=184 Identities=7% Similarity=-0.027 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+..++.+....|+|++.+.+.++++.. +......=...++.+|-. .|....+...+.......+.. ..+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~---~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK---GNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc---chh
Confidence 456888999999999999999999986 122233344445555532 233334444433332221111 011
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHHHHHc-----C-----ChhhHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG--NI-DYADTMYHLATVLYLQ-----G-----KENDSEAL 271 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 271 (377)
. ...+..-|. ..=-++=.......+.+.....-+. ++ .....+-..|..|... | -.+.|...
T Consensus 74 ~----~~~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 K----QVKLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 1 111111111 0111222334444555544322111 11 1222233344444321 1 23688999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHhc
Q 017109 272 FLESIRILEENGEGDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~ 324 (377)
|++|+++.....++.+|.......+.+..|. -.|+.++|....++++......
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999767788888877777777664 5899999999999988776443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.12 E-value=8.6 Score=32.57 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=70.5
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 337 (377)
+....++.++|++++++..+.......+ .........+|+++...|+..++.+.+...-....+..+-...-....|.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 3445568999999999999888876533 35566677899999999999999999999888776665543322333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 017109 338 GLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 338 ~la~~~~~~g~~~~A~~~~~~ 358 (377)
.-+..|...|++.......-+
T Consensus 162 lssqYyk~~~d~a~yYr~~L~ 182 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRHALL 182 (380)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 445666777888765444333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.99 E-value=13 Score=34.22 Aligned_cols=179 Identities=9% Similarity=-0.043 Sum_probs=122.3
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
+..+.....+..........|+++...-.+++++--+. .....|...+......|+.+-|...+..+.++..
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 34455666777777888889999999999999887532 3346778888888888999999999988888863
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
+....+...-+.+....|+++.|...++....-. |....+-..-+.....+|+.+.+.. +....
T Consensus 363 -------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~ 426 (577)
T KOG1258|consen 363 -------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNELY 426 (577)
T ss_pred -------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHHHH
Confidence 4445566677788888999999999999987642 3333334445566677788887774 22222
Q ss_pred HHHHhccCCCCh-hHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 017109 319 HIMESSKGWNSL-DTVIAAEGLALT-LQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 363 (377)
.... .+..++ .....+...++. +.-.++.+.|...+.+++++.
T Consensus 427 s~~~--~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 427 SSIY--EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred HHhc--ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 2211 111122 123444455554 445688889999888887753
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.90 E-value=3.1 Score=36.33 Aligned_cols=117 Identities=15% Similarity=-0.000 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHHHhCC---hhHHHHHHHHHHHHHHh
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEG---DSMTCIRRLRYLAQTYVKANR---LTDAETVQRKILHIMES 323 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 323 (377)
..++..|++.+....|++|+.++-.|-+.+-..... .....+..-..+.+||+.+.+ .+.|..-+..+-+-+..
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 345556677777777888877777666554443210 011222333455677776654 45666666555555444
Q ss_pred ccC-----------CCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 324 SKG-----------WNSLD---TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 324 ~~~-----------~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.+| +..|. ....+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 433 34444 34556667899999999999999999998877664
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=5.7 Score=32.95 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.......++-.+|...++++.|+.+.+..+.+. |..+.-....|.+|.+.|.+..|..-++..++.++
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~--------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFD--------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 456678889999999999999999999999985 55556677899999999999999999999888754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.24 Score=38.97 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=50.5
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
...+.++.+.|.+.|.++++.. |+....++.+|....+.|+++.|...|++.+++.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456789999999999999985 566889999999999999999999999999996544
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=90.21 E-value=5 Score=28.32 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED-------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+..+|......+++-.++-+|++|+.+.++...... ........++|..+..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 457888899999999999999999999887632211 1134567899999999999999999999887765444
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=90.19 E-value=9 Score=31.23 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+..++.+....++|++...+..++++.... ......-.+.++.+|-. .|....+...+.. ++......+. .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~-----~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~--~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDS-----EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN--E 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--h
Confidence 345788888899999999999998774210 01112233444444432 3555556555554 2221111111 1
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHh-----CC-----hhHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS---MTCIRRLRYLAQTYVKA-----NR-----LTDAETV 313 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~ 313 (377)
.. ..+..-|. ..=-++-...+...+.+......+.. ......+-..|..|.-. |+ .+.|...
T Consensus 76 ~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 DH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 11111111 11123444566666666655533321 22222233344444322 22 4588999
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 017109 314 QRKILHIMESSKGWNSLDTVIAAEGLALTLQ-STGSLMEAQELFERCLEAR 363 (377)
Q Consensus 314 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 363 (377)
|+.|+++......+.||.......+.+..|. -.++.++|....+++++-.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999888788889977766777766654 5699999987777766654
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.11 E-value=8.2 Score=32.03 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
.+...+..|...|.+.+|+.+.++++.. +|..-..+..+-.++...|+--.+.+.|++.-+..+.-+|.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 3455677888889999999999988876 355566777788888889998888888888877776666643
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.1 Score=37.09 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.-...+.-....|+.++|...|+.|+.+ .|....++..+|......++.-+|-.+|-+|+.+
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3344555667889999999999999998 7888899999999999999999999999999987
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.92 E-value=33 Score=37.37 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-....+++|.+.|++....|+++.|....-.|.+. ....+....|.....+|+-..|+..+++.++....
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 45668899999999999999999999999888764 25678889999999999999999999999976543
Q ss_pred hc-CC--------CchhHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHH
Q 017109 198 SF-GP--------EDIRIGVAFHNLGQFYLVQRKL--EDACTYYERALKIKG 238 (377)
Q Consensus 198 ~~-~~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~ 238 (377)
.. ++ +......+...++......|++ ..-+.+|..+.++..
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 21 11 0111122344455555555653 234566777777653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.91 E-value=7.1 Score=29.66 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=97.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
|..|+..+.-+++-..|..++++.. .+..++|+.-|...-+. .-...| ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~lekt----g~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDLEKT----GYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHHHhc----CCCcch--HHH
Confidence 3345555555555556666655532 24455565555443332 222233 456
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY--ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.+..+.+....|+...|+..|.++-... ..|.. -.+...-+.++...|.|++-....+ ....+.+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCCCC
Confidence 7888999999999999999999865432 11222 2344556777888888876555443 3334456
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
+....+...||..-++.|++..|...|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777888999999999999999999998765
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.88 Score=39.81 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
.+...|.+++.-.|+|..|++.++..---.+.....-..-...+++.+|-+|+.+++|.+|++.|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566788899999999999998775421111111112344566788999999999999999999999987765543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=89.04 E-value=6.9 Score=28.30 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.....+.++.++....+ ..+.+.+++..++. ......-.+.+.|+..+.+.++|++++.+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45677888888877654 45566666665541 223455778899999999999999999999998886
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=89.01 E-value=7.8 Score=32.33 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
|..+|.+|..+ .|..+..++.+|.++...|+.-.|+-+|-+++-.. .|. ..+..++..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~-------~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR-------IPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS-------B---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcC-------CCc-HHHHHHHHHHHHH
Confidence 67899999998 34447899999999999999999999999998543 133 5677788777776
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.98 E-value=2.7 Score=37.78 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=72.2
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
.....|+++++....... ++... -| ..-...++..+.++|.++.|+...+.- ...+
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~-----i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rF 325 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPN-----IP--KDQGQSIARFLEKKGYPELALQFVTDP----------------DHRF 325 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhccc-----CC--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHh
Confidence 334457777766655311 11111 11 233566778888888888887655432 2223
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+..+.|+++.|.+..++. +. ...|..||...+.+|+++-|+++|+++-....-..-.......
T Consensus 326 ---eLAl~lg~L~~A~~~a~~~----------~~---~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 326 ---ELALQLGNLDIALEIAKEL----------DD---PEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp ---HHHHHCT-HHHHHHHCCCC----------ST---HHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred ---HHHHhcCCHHHHHHHHHhc----------Cc---HHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 3456778888887765432 11 2358899999999999999999998865442111000000013
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~ 353 (377)
.-+..++.+....|+..-|.
T Consensus 390 ~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHccCHHHHH
Confidence 44455555555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.59 E-value=1.1 Score=25.09 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 337 EGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 337 ~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..+|..|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5689999999999999999999885
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.3 Score=36.71 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+..-.+.+.-....|+.++|...|+.|+.+. |....++..+|......++.-+|-.+|-+++.+
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 4444556666778899999999999999996 667788899999999889999999999998876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.05 E-value=26 Score=33.78 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=27.6
Q ss_pred ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
....+......+....|..++..|++++|...|-+++..
T Consensus 359 ~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 359 SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 333444556677777788888888888888888777754
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=87.67 E-value=19 Score=31.77 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH--HHHHhcCHhHHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE--LYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 194 (377)
.......+...+..++|..|...+...... . +.... ...+..++. -+....++.+|.+.++..+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l--~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRR---L--PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C--Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666778889999999999999998764 2 11222 445555544 455677889999999987765
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.58 E-value=20 Score=32.96 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=79.0
Q ss_pred ccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH-
Q 017109 112 GSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLE- 190 (377)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~- 190 (377)
...+++.+|...-... +...+...++...+......++.. ++..+.+..+++......|....+...+..
T Consensus 57 ~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 57 GIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred cCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3346667777666665 788888888888888888888766 778888999999988887777666655554
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+....... . ........++.++......|+..++.....++.+..
T Consensus 128 a~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 128 AEWLSPDN-A-EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred HHhcCcch-H-HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 44331110 0 001111223347888888999999999999888876
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=87.33 E-value=9.6 Score=31.77 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 017109 142 AEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV 219 (377)
Q Consensus 142 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 219 (377)
|+.+|.+|..+ .|..+..++.+|.++...|+.-.|+-+|-+++-. ..|. ..+..++...+.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999998 7888999999999999999999999999999854 2332 4567777777766
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.30 E-value=17 Score=30.88 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=66.6
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
+....++.++|++++++..+.......+ ..........+.++...|+.+++.+.+.+.-+......+-. +..-..++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHH
Confidence 3345568999999999998887655443 34566778889999999999999999999988777765332 22333344
Q ss_pred HH-HHHHHHhCChhHHHHH
Q 017109 296 YL-AQTYVKANRLTDAETV 313 (377)
Q Consensus 296 ~l-a~~~~~~g~~~~A~~~ 313 (377)
.+ +..|...|++......
T Consensus 161 ~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 44 4556667777654333
|
|
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.24 E-value=3.2 Score=35.34 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 187 (377)
..+.-+...|+-.+.++++++|...|..|..++.+.+|..+.....+++..|..++..+++....-.
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456678889999999999999999999999999999988889999999999999998888766543
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=87.05 E-value=12 Score=28.75 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-------CHhHHHHHHHH
Q 017109 123 WRVFTDSGRDYFL-----QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-------AFDKAEPLYLE 190 (377)
Q Consensus 123 ~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~ 190 (377)
....+..|..++. .++...|++.+..+-+. ....+...+|.++..-. +..+|++++.+
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~tr 137 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTR 137 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHH
Confidence 3455555555432 35678888888777642 34556677777766532 25667777777
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHc------------------------cCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQ------------------------RKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+.++ .+ ..+.++|+..|..- .+.++|.++--+|-++
T Consensus 138 aCdl-------~~---~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel---------- 197 (248)
T KOG4014|consen 138 ACDL-------ED---GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL---------- 197 (248)
T ss_pred hccC-------CC---chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc----------
Confidence 7654 11 23444455444432 3445555555555443
Q ss_pred hHHHHHHHHHHHHHHc----CChhhHHHHHHHHHHHHHHcC
Q 017109 247 DYADTMYHLATVLYLQ----GKENDSEALFLESIRILEENG 283 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~ 283 (377)
..+.+..++++.|..- .+.++|..+-.++.++.++..
T Consensus 198 ~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 198 DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 2345666777776542 356788888888888876653
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.46 E-value=20 Score=32.01 Aligned_cols=139 Identities=16% Similarity=0.094 Sum_probs=89.9
Q ss_pred HhHHHHHHHHHHHHHHh-cCHhHHHHHHHHHHHHHHHhcC----CC--chhHHHHHHH----HHHHHHHccCHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVK-KAFDKAEPLYLEAIKILQESFG----PE--DIRIGVAFHN----LGQFYLVQRKLEDACTYY 230 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~----~~--~~~~~~~~~~----la~~~~~~g~~~~A~~~~ 230 (377)
....+++..+|..|... .+.-.|..++.++++....... +. .|..+.-+.. ....-.-.++.+ ..-
T Consensus 242 ~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~R 318 (615)
T KOG0508|consen 242 ESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMR 318 (615)
T ss_pred hhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHH
Confidence 34466677777776643 3567788899998887554100 00 1111111111 111111112221 122
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 231 ERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
-+++-+.+++.+++|++........|-+|..+|+++..++++.-|+.+.++...+-++.+...+...+.++..
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 3566677788899999887777778999999999999999999999999998777777777777777777653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=86.26 E-value=2.2 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
..+|..+-..+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46889999999999999999999876
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.19 E-value=28 Score=32.10 Aligned_cols=176 Identities=13% Similarity=0.041 Sum_probs=102.5
Q ss_pred cCHhHHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC----------
Q 017109 179 KAFDKAEPLYLEAIKILQESF----GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG---------- 244 (377)
Q Consensus 179 g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 244 (377)
..|++|...|.-+.....-.. -.++|.....+..++.+...+|+.+-|.+..++++-.......+.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 446777777776666532110 012566788999999999999999999999999988776543221
Q ss_pred ------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 245 ------NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 245 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
+....-+++..-..+.+.|-+..|.++++-.+++-+. .+|..+ .+.+-...+...+|.=-++.++..-
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~----eDPl~~--l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS----EDPLGI--LYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc----CCchhH--HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1112223333344556789999999999888876322 123222 1222222334444444444443332
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGS---LMEAQELFERCLEARK 364 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 364 (377)
..-.-..-++ ...-..+|..|..... ...|...+.+|+...+
T Consensus 406 ~~n~l~~~PN----~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 406 NMNKLSQLPN----FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hhccHhhcCC----chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2111111111 1223346677776665 6788889999988776
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.8 Score=34.30 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=50.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 132 DYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 132 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.....++.+.|.+.|.+++++ -|.....++.+|......|+++.|..-|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445678999999999999988 6888899999999999999999999999999987
|
|
| >COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.72 E-value=15 Score=28.52 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC-
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGE--GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN- 328 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 328 (377)
+...+......|++++|...++++.+...+... ...|. .+.-|.+--.+..|-+|...+.-...-. ...++
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe----l~~ag~~~~a~QEyvEA~~l~~~l~~~~--~ps~~E 105 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE----LYFAGFVTTALQEYVEATLLYSILKDGR--LPSPEE 105 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHhhcchHHHHHHHHHHHHHHhcCC--CCCHHH
Confidence 444556677889999999999988877655420 01111 1222333334445566655554322211 10100
Q ss_pred -ChhHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 017109 329 -SLDTVIAAEGLAL----------TLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 329 -~~~~~~~~~~la~----------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
..........+|+ .....|++++|...++-.-.++..+..-+.|..
T Consensus 106 L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~ 162 (204)
T COG2178 106 LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKA 162 (204)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 0001122222222 345779999999999999999888877777753
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=53 Score=35.76 Aligned_cols=241 Identities=11% Similarity=-0.003 Sum_probs=138.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHH--HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASA--CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 206 (377)
++.++...++|.+...+-.-+..+...+ .+++..... --.+++++....++.++-.+-.-+..+............
T Consensus 879 vantLNALSKWPd~~~C~~AA~aLA~rL--~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~ 956 (2710)
T PRK14707 879 VVIVLNALSKWPNVPVCAAAASALAERL--ADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLRE 956 (2710)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHH--hcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhh
Confidence 4556666667766666666666666665 234444333 345777788888887766665555556555532212222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
...-..++.++...+++.+...+-.-+..+...+..+..-.....-..++.++....++.++-.+-.-+..+..... .
T Consensus 957 Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ 1034 (2710)
T PRK14707 957 ALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--N 1034 (2710)
T ss_pred hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--c
Confidence 23344577788888888877776666666655442221111112234567777777888776666666666665543 2
Q ss_pred CHHH--HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 287 SMTC--IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 287 ~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+.. ...-..++.++....++.+.-.+-.-+..+...............-..++.++...-++.+.-.+-..++.+..
T Consensus 1035 ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~ 1114 (2710)
T PRK14707 1035 DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAK 1114 (2710)
T ss_pred CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 2222 22234677788888888776666555555544332221111223334566677777777777777777777777
Q ss_pred hhCCCCCCc
Q 017109 365 KLMPQDHIQ 373 (377)
Q Consensus 365 ~~~~~~~~~ 373 (377)
.+-+..++.
T Consensus 1115 rL~~~~~l~ 1123 (2710)
T PRK14707 1115 RLTDDAGLR 1123 (2710)
T ss_pred Hhccccchh
Confidence 665544443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=85.57 E-value=2.5 Score=22.02 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
..++..+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56888999999999999999999876
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=67 Score=35.09 Aligned_cols=244 Identities=9% Similarity=-0.022 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHH--HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASA--CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.+++++...++|.+...+-.-+..+...+ .+++..... -..+++++....++.++-.+-.-+..+...+.+.....
T Consensus 962 ~lsNtLNALSKWPd~~~c~~AA~aLA~rL--~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~ 1039 (2710)
T PRK14707 962 NLPQVLNALSKWPDVPAGGEVVDALAERL--VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLC 1039 (2710)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHH--hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhh
Confidence 34566666677776666666665555554 223332222 34567777788888776666666666666553211111
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
....-..++.++....++.+...+-.-+..+...+.....-.....-..++.++....++.+.-.+-+.++.+.......
T Consensus 1040 ~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~ 1119 (2710)
T PRK14707 1040 KALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDD 1119 (2710)
T ss_pred hhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccc
Confidence 22233457777777777776666655555555443322111122223456777777778888777777777777777544
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+........++.+.....++.....+=.-+..+...............-..++..+-...++.+.-.+-+-++.+...
T Consensus 1120 ~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~r 1199 (2710)
T PRK14707 1120 AGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAER 1199 (2710)
T ss_pred cchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHh
Confidence 44444444455666666666665544444434444333322211112222334555555555555555555555555555
Q ss_pred hCCCCCCc
Q 017109 366 LMPQDHIQ 373 (377)
Q Consensus 366 ~~~~~~~~ 373 (377)
.-...+|.
T Consensus 1200 lG~a~~P~ 1207 (2710)
T PRK14707 1200 AGSAELPW 1207 (2710)
T ss_pred hcCCCCCc
Confidence 44444543
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=83.90 E-value=14 Score=26.63 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=57.3
Q ss_pred CChhhHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 017109 263 GKENDSEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 341 (377)
+.-..-..++++++..+... .-.+++....++...+... +++.+.|...... ..|. ..+..+...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~---~IG~---~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSK---GIGT---KLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHH---TTST---TBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHc---CccH---HHHHHHHHHHH
Confidence 45556677888888887553 2234556666665555432 2777777765432 2232 33788999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 017109 342 TLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 342 ~~~~~g~~~~A~~~~~~al 360 (377)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998865
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [] | Back alignment and domain information |
|---|
Probab=83.81 E-value=23 Score=32.48 Aligned_cols=71 Identities=10% Similarity=-0.085 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVK--ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 290 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
...++.+||.+-.- ...-..++.+|.+++...+..++..| ..-|..+|-.+.+.+++.+|+..+.++-+..
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556655432 23345679999999999988887655 4667788999999999999999888776543
|
; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A. |
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.56 E-value=3.9 Score=34.84 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
..-+...|.-.+.++++++|...|..|..++...+|..+.....+++..|..++..++.....-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456678889999999999999999999999999999888999999999999988877665543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.36 E-value=8.8 Score=27.78 Aligned_cols=67 Identities=12% Similarity=0.023 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCh---hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRL---TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...+.++++.++....+. .+.+.+++..++. .......++.+.|+.-+.+.|+|+++..+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344567788888766544 4455555554430 111224678888999999999999999999988874
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.01 E-value=28 Score=29.59 Aligned_cols=59 Identities=22% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
.+-...++..+..+-++....++++ ++.-+.++..++.--. .-..+|+..++++++..+
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE 247 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH
Confidence 3344445666677777777888877 6677777777665432 346678888888877643
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.38 E-value=35 Score=30.19 Aligned_cols=140 Identities=11% Similarity=-0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV--LYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
.-....+...+..++|..|...+...... ..+. .. ...+..++.. +...-++.+|.+.++..+......
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~--~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l--- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGR--EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL--- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCch--hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---
Confidence 45566777888999999999999998764 1111 21 3445555444 456778889999999877642210
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
......+..+..+. ++...+.....................+..-|.=-...|+|+.|...+=+++++.-+
T Consensus 203 --~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 --NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred --HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00011111122221 111122222221111100001222333334444445689999999999888887654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=82.19 E-value=2.8 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999988654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=82.13 E-value=16 Score=26.24 Aligned_cols=86 Identities=13% Similarity=0.213 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEG-FGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
|.-..-...+++++...... .-.+++....++...+.... .+.+.|...... ..| ...+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---Ccc---HHHHHHHHHHHH
Confidence 55566677888888876432 11334556666665555332 777777765543 112 334678899999
Q ss_pred HHHHccCHHHHHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al 234 (377)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.88 E-value=12 Score=33.97 Aligned_cols=99 Identities=16% Similarity=0.047 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~ 198 (377)
.++....-|.-.+..+....++..|.+++.. .+.....+.+.+.+++..+ +.-.|+.-...++.+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---- 440 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---- 440 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----
Confidence 3444445555555566677888888888866 5677778888888887754 444455555555554
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
++....+++.|+.++...+++.+|+++...+...
T Consensus 441 ----n~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 441 ----NPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred ----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 5667789999999999999999999987665443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.29 E-value=30 Score=28.70 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE-DACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..+...|++..|.+...-.++.+.+...+.+ ......+..+....+.-+ +-..+.++++... +. +......+..
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gdp~L 92 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGDPEL 92 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--HHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCCHHH
Confidence 3444444455555554444444444322111 122344555554443322 3556777777777 22 3333556788
Q ss_pred HHHHHHHHHHcCChhhHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+..+|..+.+.|++.+|..++-.
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 88999999999998888877654
|
; PDB: 3LKU_E 2WPV_G. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.66 E-value=7.2 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
+..+...|.-+...|++++|+.+|+++++...++..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556667778899999999999999998877543
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.23 E-value=13 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+..+...|.-+-..|++++|+.+|+++++...+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4556677777888999999999999999987654
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 377 | ||||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 6e-13 | ||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 2e-07 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 2e-12 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 4e-12 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 3e-07 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-05 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 7e-04 |
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 9e-45
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 5/235 (2%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y Q K +A L AL ++ G+ P VA+ NNLA LY + + +AEPL A+
Sbjct: 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I ++ G + + +NL Q K E+ YY+RAL+I LG + + A T
Sbjct: 139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEEN--GEGDSMTCIRRLRYLAQTYVKANRLTDA 310
+LA+ QGK +E L+ E + E G D + + + D
Sbjct: 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN-KPIWMHAEEREECKGKQKDG 257
Query: 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365
+ + +S + L + G A+ L E + +RK+
Sbjct: 258 TSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 5e-43
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 5/241 (2%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ ++ G P VA+ N LA +YR + + A L +A+
Sbjct: 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
I +++ G + + +NL Y + K ++A +RAL+I+ +VLG + D A +
Sbjct: 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAE 311
+LA + QGK + E + ++ I + G D + LA Y+K + AE
Sbjct: 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKFKQAE 215
Query: 312 TVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370
T+ ++IL E G + + G + E K D
Sbjct: 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE--YGGWYKACKVD 273
Query: 371 H 371
Sbjct: 274 S 274
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-40
Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 10/241 (4%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ + E L+ G P +NL Y + ++ A PL +A+
Sbjct: 2 HHHHHHSSGRENLYFQGG-------GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQAL 54
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ L+++ G + + + L Y Q K +DA AL I+ + LG + A T+
Sbjct: 55 EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAE 311
+LA + +GK ++E L ++ I E+ G+ ++L LA + + E
Sbjct: 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV-AKQLNNLALLCQNQGKYEEVE 173
Query: 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL-EARKKLMPQD 370
++ L I ++ G + + LA G +A+ L++ L A ++
Sbjct: 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233
Query: 371 H 371
Sbjct: 234 D 234
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 4e-19
Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 42/187 (22%)
Query: 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247
+ + G E HNL Y Q + E A ++AL+ + GH + D
Sbjct: 8 SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 67
Query: 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL 307
A + LA V Q +
Sbjct: 68 VATMLNILALVYRDQN------------------------------------------KY 85
Query: 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367
DA + L I E + G + LA+ G EA+ L +R LE R+K++
Sbjct: 86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145
Query: 368 PQDHIQV 374
+DH V
Sbjct: 146 GKDHPDV 152
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 3e-44
Identities = 60/234 (25%), Positives = 92/234 (39%), Gaps = 5/234 (2%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y Q K EA L AL ++ G+ P VA+ NNLA LY + + +AEPL A+
Sbjct: 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I ++ G + +NL Q K E+ YY RAL+I LG + + A T
Sbjct: 113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEEN--GEGDSMTCIRRLRYLAQTYVKANRLTDA 310
+LA+ QGK D+E L+ E + E G + + + ++ D+
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDN-KPIWMHAEEREESKDKRRDS 231
Query: 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364
+ +S L + G L A L + RK
Sbjct: 232 APYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 7e-43
Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 5/238 (2%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
A L AL++ ++ G P VA+ N LA +YR + + +A L +A+ I
Sbjct: 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR 73
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
+++ G + + +NL Y + K ++A +RAL+I+ +VLG + D A + +L
Sbjct: 74 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL 133
Query: 256 ATVLYLQGKENDSEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314
A + QGK + E + ++ I G D + LA Y+K + DAET+
Sbjct: 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQGKYQDAETLY 192
Query: 315 RKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDH 371
++IL E G + D +S ++ E K D
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS--WYKACKVDS 248
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 9e-31
Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 3/205 (1%)
Query: 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACT 228
++ A PL +A++ L+++ G + + + L Y Q K ++A
Sbjct: 5 HHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAH 64
Query: 229 YYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN-GEGDS 287
AL I+ + LG + A T+ +LA + +GK ++E L ++ I E+ G+
Sbjct: 65 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124
Query: 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG 347
++L LA + + E R+ L I + G + + LA G
Sbjct: 125 DV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 348 SLMEAQELFERCL-EARKKLMPQDH 371
+A+ L++ L A +K +
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVN 208
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 42/164 (25%)
Query: 211 HNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270
H+ A ++AL+ + GH + D A + LA V Q
Sbjct: 5 HHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN------- 57
Query: 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330
+ +A + L I E + G +
Sbjct: 58 -----------------------------------KYKEAAHLLNDALAIREKTLGKDHP 82
Query: 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374
LA+ G EA+ L +R LE R+K++ + H V
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 35/240 (14%), Positives = 77/240 (32%), Gaps = 15/240 (6%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y+ + + L AL + + +A Y K +DKA P A+
Sbjct: 151 YYHMKQTHVSMYHILQALDIYQN-HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
++ + D I ++ N+ Y + A ++++A K+ +
Sbjct: 210 ELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE---KVPDLLPKVL 264
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+ L+ L G+ + E + + +L Y + T E
Sbjct: 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE---LFLFLQAVYKE----TVDER 317
Query: 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372
+L E A A +S+ +A + + L+A++ ++ + +
Sbjct: 318 KIHDLLSYFEKKNLHA--YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 5e-16
Identities = 41/252 (16%), Positives = 90/252 (35%), Gaps = 14/252 (5%)
Query: 132 DYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLY--- 188
Q + +AE L Q+ ++ E D + + + +++ + + Y
Sbjct: 21 KMIRQFSVPDAEILKAEVEQDIQQM--EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNR 78
Query: 189 ---LEAIKILQESFGPEDIRIGVAFH-NLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244
E ++ ++ + G + Q++ +A YY A K V
Sbjct: 79 PTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD- 137
Query: 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304
I+ A+ + +A Y + + S L+++ I + + S+ I+ L +A Y
Sbjct: 138 -IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDF 195
Query: 305 NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364
A L + + N I+ +A + +G A E F++ + +
Sbjct: 196 KHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253
Query: 365 KLMPQDHIQVCF 376
+ +P +V F
Sbjct: 254 EKVPDLLPKVLF 265
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 31/243 (12%), Positives = 76/243 (31%), Gaps = 14/243 (5%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
Y+ + + A + KE + + + A + K ++ A +
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKE-HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQ 208
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A + + + +G +N+G Q + EDA Y++RA+ +
Sbjct: 209 KAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--PSLP 264
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+ + + Y GK + + + + ++ G+ +
Sbjct: 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-------VIYLSEFEFLKSLYLSGP 317
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369
E + +ES + D A +A + +A F + + R+ +
Sbjct: 318 DEEAIQGFFDFLESKMLYA--DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGG 375
Query: 370 DHI 372
+
Sbjct: 376 VSL 378
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-22
Identities = 45/249 (18%), Positives = 73/249 (29%), Gaps = 11/249 (4%)
Query: 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK 178
++ L A + L G+R A NL + +
Sbjct: 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA-LGDR-AAQGRAFGNLGNTHYLL 200
Query: 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238
F A + + + I +E FG + A+ NLG Y+ + E A YY++ L +
Sbjct: 201 GNFRDAVIAHEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258
Query: 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLA 298
++ A + Y L L + L+ + I +E + R L
Sbjct: 259 QLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG--RACWSLG 314
Query: 299 QTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG-SLMEAQELFE 357
Y A K L I + T A L+ G S +
Sbjct: 315 NAYTALGNHDQAMHFAEKHLEISREVGDKSGELT--ARLNLSDLQMVLGLSYSTNNSIMS 372
Query: 358 RCLEARKKL 366
E L
Sbjct: 373 ENTEIDSSL 381
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 32/257 (12%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G G F +A+Q E +++ + L Y + KA +
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + + A NLG V ++A +R L I + A
Sbjct: 72 HDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE--A 127
Query: 250 DTMYHLATVLYLQGKENDS------------------EAL--FLESIRILEENGEGDSMT 289
+Y+L V + +GK A+ + E++ ++ G+ +
Sbjct: 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ- 186
Query: 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSL 349
R L T+ DA + L I + + A L G
Sbjct: 187 -GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEF 243
Query: 350 MEAQELFERCLEARKKL 366
A E +++ L ++L
Sbjct: 244 ETASEYYKKTLLLARQL 260
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 11/129 (8%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y L +A L L A+E +R AC +L Y D+A
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLAIAQE-LNDR-IGEGRACWSLGNAYTALGNHDQAMHFAE 331
Query: 190 EAIKILQESFGPEDI-----RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG-- 242
+ ++I +E + LG Y + T + +L LG
Sbjct: 332 KHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRR 391
Query: 243 --HGNIDYA 249
N++
Sbjct: 392 HSMENMELM 400
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 19/190 (10%), Positives = 45/190 (23%), Gaps = 33/190 (17%)
Query: 200 GPEDIR-IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV 258
GP + + G+ +++E A+++ L + L
Sbjct: 1 GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----TLSAIYSQLGNA 56
Query: 259 LYLQGKENDSEALFLESIRILEE----NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314
+ + + + GE + L T +A
Sbjct: 57 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA------SGNLGNTLKVLGNFDEAIVCC 110
Query: 315 RKILHIMESSKG--------------WNSL----DTVIAAEGLALTLQSTGSLMEAQELF 356
++ L I +++ + + +L A + +
Sbjct: 111 QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170
Query: 357 ERCLEARKKL 366
E L L
Sbjct: 171 EENLSLVTAL 180
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 6e-22
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 5/155 (3%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y + EA F + Q+A++ G+ A + + + R+ +D A +L
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQK-SGDH-TAEHRALHQVGMVERMAGNWDAARRCFL 90
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
E ++L + + + + L L A YE++L + I A
Sbjct: 91 EERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI--A 147
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
L + + +++ +L + I E +
Sbjct: 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-19
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 5/135 (3%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + G A + FL + E ++ +A + A Y
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYE 131
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+++ Q++ + + I AF LG ++ L +A ++ RA I + +
Sbjct: 132 KSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAV--N 187
Query: 250 DTMYHLATVLYLQGK 264
+ M L + +
Sbjct: 188 ELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-19
Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 7/182 (3%)
Query: 141 EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200
EA L+ Q + A L +Y FD+A + + Q+S
Sbjct: 4 EAHDYALAERQAQAL-LAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-- 59
Query: 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY 260
+ A H +G + + A + ++ L + + Y +ATV
Sbjct: 60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVAL 118
Query: 261 LQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320
G + + +S+ ++ + ++ C R L + L +A+ + I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACA--FRGLGDLAQQEKNLLEAQQHWLRARDI 176
Query: 321 ME 322
Sbjct: 177 FA 178
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 4e-21
Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 12/229 (5%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDP---HVASACNNLAELYRVKKAFDKAEPLYLEAI 192
K++EA + A + K F + P AS A ++ K ++A+ YL+
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ + AF G +++ +A Y E+A + + +G D A
Sbjct: 64 EAHANNRSLFH--AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY---VENGTPDTAAMA 118
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
A L + + L+ ++ + E + + ++ V+ + +A
Sbjct: 119 LDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAEL--IGKASRLLVRQQKFDEAAA 176
Query: 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+K + + + + + L + AQ+
Sbjct: 177 SLQKEKSMYKEMENYPTCYK--KCIAQVLVQLHRADYVAAQKCVRESYS 223
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 3e-12
Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 16/179 (8%)
Query: 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAE 185
+ + + +L +A+ +L + H A A + + + +A
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL--FHAAKAFEQAGMMLKDLQRMPEAV 96
Query: 186 PLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245
+A + E+ P+ +A G+ L A Y++A +
Sbjct: 97 QYIEKASVMYVENGTPD--TAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENEERLRQ 153
Query: 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304
A+ + + +L Q K +++ A + + +E + +
Sbjct: 154 A--AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN---------YPTCYKKCIAQ 201
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-10
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 7/160 (4%)
Query: 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK 183
+ F +G ++ EA + A E G D A A + +L K
Sbjct: 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-GTPDT-AAMALDRAGKLMEPLD-LSK 133
Query: 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243
A LY +A + + + + Q+K ++A ++ + + +
Sbjct: 134 AVHLYQQAAAVFENEERLRQA--AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191
Query: 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283
V + ++ ES I +G
Sbjct: 192 PTC--YKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSG 229
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-21
Identities = 42/254 (16%), Positives = 85/254 (33%), Gaps = 29/254 (11%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G G F +A+Q E +++ + L Y ++KA +
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + + + NLG V + ++A ER L + ++ +
Sbjct: 111 HDLTLAKSMNDRLG--EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE--G 166
Query: 250 DTMYHLATVLYLQGK---------------ENDSEAL--FLESIRILEENGEGDSMTCIR 292
+Y+L V + +GK E + A+ + E+++++ + G+ + R
Sbjct: 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ--GR 224
Query: 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA 352
L TY A ++ L I + A L + G +A
Sbjct: 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSHIFLGQFEDA 282
Query: 353 QELFERCLEARKKL 366
E ++R L +L
Sbjct: 283 AEHYKRTLALAVEL 296
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 25/246 (10%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
G Q+ + + E + AI+
Sbjct: 21 LGSGGGGTNSHDGNSQQGSGS--DGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG 78
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
E + + + LG Y A Y++ L + + A + +L
Sbjct: 79 TE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSGNL 132
Query: 256 ATVLYLQGKENDSEALFLESIRILEE----NGEGDSMTCI-----------RRLRYLAQT 300
L + G+ +++ + + + EG ++ + +
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192
Query: 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360
LT A ++ L +M + A L T G A E + L
Sbjct: 193 DDVKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250
Query: 361 EARKKL 366
++
Sbjct: 251 RIAREF 256
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 9e-19
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 16/190 (8%)
Query: 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194
++ L A + + L+ ++ G+R AC NL Y + F A + E ++I
Sbjct: 195 VKEALTRAVEFYQENLKLMRD-LGDR-GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252
Query: 195 LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254
+E FG + A NLG ++ + EDA +Y+R L + LG A + Y
Sbjct: 253 ARE-FG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA-VELGE-REVEAQSCYS 308
Query: 255 LATVLYLQGKENDSEALFLESIRILEENG----EGDSMTCIRRLRYLAQTYVKANRLTDA 310
L L + N + + I +E G E + L + A
Sbjct: 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA------CWSLGNAHSAIGGHERA 362
Query: 311 ETVQRKILHI 320
+ L +
Sbjct: 363 LKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + G+ +A + + L A E GER A +C +L Y + F+ A +
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAVE-LGER-EVEAQSCYSLGNTYTLLHEFNTAIEYHN 327
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
+ I QE G + I A +LG + E A Y E+ L++
Sbjct: 328 RHLAIAQE-LG-DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 27/167 (16%), Positives = 47/167 (28%), Gaps = 8/167 (4%)
Query: 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259
GP ++ L ++ + G ++ + L
Sbjct: 1 GPLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSM--CLELALEGERL 58
Query: 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319
G A F +I+ E+ S L Y A + L
Sbjct: 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAI----YSQLGNAYFYLGDYNKAMQYHKHDLT 114
Query: 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366
+ +S + L ++ L TL+ G EA ER L ++L
Sbjct: 115 LAKSMN--DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-20
Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 8/205 (3%)
Query: 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK 178
++ L A L+ L G+R A NL + +
Sbjct: 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA-LGDR-AAQGRAFGNLGNTHYLL 196
Query: 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238
F A + + + I +E FG + A+ NLG Y+ + E A YY++ L +
Sbjct: 197 GNFRDAVIAHEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254
Query: 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLA 298
++ A + Y L L + L+ + I +E + L
Sbjct: 255 QLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA--CWSLG 310
Query: 299 QTYVKANRLTDAETVQRKILHIMES 323
Y A K L I
Sbjct: 311 NAYTALGNHDQAMHFAEKHLEISRE 335
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-20
Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 32/257 (12%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G G F +A+Q E +++ + L Y + KA +
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + + A NLG V ++A +R L I + A
Sbjct: 68 HDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE--A 123
Query: 250 DTMYHLATVLYLQGKENDS------------------EAL--FLESIRILEENGEGDSMT 289
+Y+L V + +GK A+ + E++ ++ G+ +
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ- 182
Query: 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSL 349
R L T+ DA + L I + + A L G
Sbjct: 183 -GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEF 239
Query: 350 MEAQELFERCLEARKKL 366
A E +++ L ++L
Sbjct: 240 ETASEYYKKTLLLARQL 256
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 6/155 (3%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G ++L G +A L AKE FG++ A +NL Y F+ A Y
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKE-FGDK-AAERRAYSNLGNAYIFLGEFETASEYYK 247
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + + ++ + ++LG Y + + E A Y+ + L I +
Sbjct: 248 KTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE--G 303
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
+ L G + + + + I E G+
Sbjct: 304 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 18/178 (10%), Positives = 41/178 (23%), Gaps = 32/178 (17%)
Query: 211 HNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270
G+ +++E A+++ L + L + +
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----TLSAIYSQLGNAYFYLHDYAKALE 64
Query: 271 LFLESIRILEE----NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326
+ + GE + L T +A ++ L I
Sbjct: 65 YHHHDLTLARTIGDQLGEAKA------SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118
Query: 327 --------------WNSL----DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366
+++ + +L A +L+E L L
Sbjct: 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-19
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 6/154 (3%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G ++L G +A L AKE FG++ A +NL Y F+ A Y
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRLLIAKE-FGDK-AAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + + ++ + ++LG Y + + E A Y+ + L I +
Sbjct: 74 KTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE--G 129
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENG 283
+ L G + + + + I E G
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 7e-15
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Query: 156 GFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215
G G R A NL + + F A + + + I +E +A+ NLG
Sbjct: 1 GPGSR-AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGN 57
Query: 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275
Y+ + E A YY++ L + ++ A + Y L L + L+
Sbjct: 58 AYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 276 IRILEENGE 284
+ I +E +
Sbjct: 116 LAIAQELKD 124
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-08
Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 6/161 (3%)
Query: 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKE 265
G AF NLG + + DA +E+ L I +L G+
Sbjct: 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAYIFLGEF 65
Query: 266 NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325
+ + +++ + + + L TY A K L I + K
Sbjct: 66 ETASEYYKKTLLLARQLKDRAVEAQS--CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
Query: 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366
+ + A L + G+ +A E+ LE +++
Sbjct: 124 --DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 3e-19
Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 9/228 (3%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
G EAE+L AL+E G A + L E+ K ++ L +
Sbjct: 24 AINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
++ ++ + + Q L+ A E+A ++ + +
Sbjct: 81 QMARQHDVWHYALW--SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
A +L+ + +++EA I +L ++ L L Q + L +A +
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---QLQCLAMLIQCSLARGDLDNARS 195
Query: 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360
++ +++ + ++S A + + Q TG A
Sbjct: 196 QLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 8e-18
Identities = 39/232 (16%), Positives = 71/232 (30%), Gaps = 10/232 (4%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
F QG L A + A Q E E+ P A+L D+AE
Sbjct: 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
I++L + ++ L Q L + L++A + R + G H + +
Sbjct: 160 SGIEVLSSYQPQQQLQC---LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW-IS 215
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+ + G + + + + N + R +A+ +
Sbjct: 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF----LQGQWRNIARAQILLGEFEP 271
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
AE V ++ S + D L G +AQ + L+
Sbjct: 272 AEIVLEELNENARSLRLM--SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 8e-17
Identities = 25/237 (10%), Positives = 62/237 (26%), Gaps = 10/237 (4%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +G+L + L Q A++ + + + +E+ + A
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQE 117
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A +++ E + Q +L++A +++ +
Sbjct: 118 KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS---YQPQQQL 174
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+ L +G +++ + +L +
Sbjct: 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK-VRVIYWQMTGDKAA 233
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366
A L + N+ +A G A+ + E E + L
Sbjct: 234 AANW----LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 286
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 2e-15
Identities = 34/208 (16%), Positives = 73/208 (35%), Gaps = 9/208 (4%)
Query: 158 GERDPHVASACNNL-AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216
R+ + + N L A++ D+AE L A++ L + I VA LG+
Sbjct: 6 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI---VATSVLGEV 62
Query: 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276
+ +L + ++ ++ + ++ + + +L+ QG + ++
Sbjct: 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWS--LIQQSEILFAQGFLQTAWETQEKAF 120
Query: 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAA 336
+++ E +R AQ RL +AE R + ++ S + +
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS---YQPQQQLQCL 177
Query: 337 EGLALTLQSTGSLMEAQELFERCLEARK 364
L + G L A+ R
Sbjct: 178 AMLIQCSLARGDLDNARSQLNRLENLLG 205
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ + G A A + L+ + + + N+A + F+ AE + E
Sbjct: 225 WQMTGDKAAAA----NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
+ + D+ L Q Y + DA ALK+
Sbjct: 281 ENARSLRLMSDL--NRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 42/233 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ G AE+ + ++P L+ ++ + D++
Sbjct: 6 AHREYQAGDFEAAERHCMQLW--------RQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
AIK P A+ NLG Y + +L++A +Y AL++K D+
Sbjct: 58 LAIKQ-----NPLLAE---AYSNLGNVYKERGQLQEAIEHYRHALRLKP--------DFI 101
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
D +LA L G + ++ +++ + L RL +
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV--------RSDLGNLLKALGRLEE 153
Query: 310 AETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
A+ K + + W++ L + G + A FE+ +
Sbjct: 154 AKACYLKAIETQPNFAVAWSN---------LGCVFNAQGEIWLAIHHFEKAVT 197
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 4e-17
Identities = 42/233 (18%), Positives = 88/233 (37%), Gaps = 42/233 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + A + ++SAL + +P + ++L L + ++A+ YL
Sbjct: 108 AAALVAAGDMEGAVQAYVSAL--------QYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+AI+ P VA+ NLG + Q ++ A ++E+A+ + ++
Sbjct: 160 KAIET-----QPNFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--------NFL 203
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
D +L VL + + A +L ++ + + LA Y + +
Sbjct: 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV--------HGNLACVYYEQGLIDL 255
Query: 310 AETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
A R+ + + + + LA L+ GS+ EA++ + L
Sbjct: 256 AIDTYRRAIELQPHFPDAYCN---------LANALKEKGSVAEAEDCYNTALR 299
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y+ QG + A + A+ E PH A NLA + K + +AE Y A+
Sbjct: 247 YYEQGLIDLAIDTYRRAI--------ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
++ P + +NL Q +E+A Y +AL++ ++A
Sbjct: 299 RL-----CPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFP--------EFAAAH 342
Query: 253 YHLATVLYLQGKENDSEALFLESIRI 278
+LA+VL QGK ++ + E+IRI
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRI 368
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+G +AEAE + +AL P A + NNLA + R + ++A LY
Sbjct: 278 ANALKEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+++ PE A NL Q KL++A +Y+ A++I +A
Sbjct: 330 KALEV-----FPEFAA---AHSNLASVLQQQGKLQEALMHYKEAIRISP--------TFA 373
Query: 250 DTMYHLATVLYLQG 263
D ++ L
Sbjct: 374 DAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 34/193 (17%)
Query: 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTY 229
LA F+ AE ++ + P++ L + R+L+ + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQ-----EPDNTG---VLLLLSSIHFQCRRLDRSAHF 55
Query: 230 YERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289
A+K N A+ +L V +G+ ++ + ++R+ + +G
Sbjct: 56 STLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG---- 103
Query: 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGS 348
LA V A + A L + + L L++ G
Sbjct: 104 ----YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD---------LGNLLKALGR 150
Query: 349 LMEAQELFERCLE 361
L EA+ + + +E
Sbjct: 151 LEEAKACYLKAIE 163
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 33/159 (20%)
Query: 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263
+ + + G F E A + + + D + L+++ +
Sbjct: 3 MELAHREYQAGDF-------EAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCR 47
Query: 264 KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM-E 322
+ + S +I+ E L Y + +L +A R L + +
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEA--------YSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 323 SSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
G+ + LA L + G + A + + L+
Sbjct: 100 FIDGYIN---------LAAALVAAGDMEGAVQAYVSALQ 129
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 31/219 (14%), Positives = 66/219 (30%), Gaps = 35/219 (15%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQ------EA--KEGFGERDPHVASACNNLAELYRVKKAF 181
G+ +A F + E + + LA Y+ + +
Sbjct: 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70
Query: 182 DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241
DKA Y E ++ P ++ + + + + +DA YE+ L++
Sbjct: 71 DKAYLFYKELLQK-----APNNVD---CLEACAEMQVCRGQEKDALRMYEKILQL----- 117
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEAL--FLESIRILEENGEGDSMTCIRRLRYLAQ 299
D L YL E + + L + + +
Sbjct: 118 ---EADNLAANIFLGNYYYLTA-EQEKKKLETDYKKLSSPTKMQYA--------RYRDGL 165
Query: 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338
+ + R A +K++ S++ +LD ++ E
Sbjct: 166 SKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEK 204
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 6e-09
Identities = 23/206 (11%), Positives = 53/206 (25%), Gaps = 33/206 (16%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKI--------LQESFGPEDIRIGVAFHNLGQF 216
+A + + I + + L
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276
Y R + A +Y+ L+ + D + A + +G+E D+ ++ + +
Sbjct: 64 YKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
Query: 277 RILEENGEGDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335
++ +N +L Y A + K L A
Sbjct: 116 QLEADNLAA--------NIFLGNYYYLTAEQEKKKLETDYKKLSSPT--------KMQYA 159
Query: 336 AEGLALTLQSTGSLMEAQELFERCLE 361
L+ T +A+ ++ +
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 34/233 (14%), Positives = 79/233 (33%), Gaps = 34/233 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G FL+ A + A+ E P ++ +A + + + +
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAI--------ELFPR-VNSYIYMALIMADRNDSTEYYNYFD 294
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+K+ + +++ GQ + + + A +++A ++ + +
Sbjct: 295 KALKL-----DSNNSS---VYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENI 338
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
LA + Y + K +D E LF E+ R E E + A+ N
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV--------PNFFAEILTDKNDFDK 390
Query: 310 AETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
A + + + + + ++ L + + +EA L E+ +
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 33/164 (20%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ + K + E LF A + P N AE+ K FDKA Y
Sbjct: 345 ACLAYRENKFDDCETLFSEAK--------RKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQR---------KLEDACTYYERALKIKGRV 240
AI++ + + + +A E+A K+
Sbjct: 397 LAIEL-----ENKLDG---IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL---- 444
Query: 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
+ LA + Q +++ LF ES + E
Sbjct: 445 ----DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 34/260 (13%), Positives = 80/260 (30%), Gaps = 47/260 (18%)
Query: 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187
S +F K + + + KE + + + ++F KA L
Sbjct: 162 TSMASFFGIFKPELTFANYDESNEADKE---LMNGLSNLYKRSPESYDKADESFTKAARL 218
Query: 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI- 246
+ E + E ++ ++ + G F ++ A ++A+++ RV + +
Sbjct: 219 FEEQLDKNNED-EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMA 277
Query: 247 ------------------------DYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282
+ + YH + ++ + + F ++ + EN
Sbjct: 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
Query: 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLAL 341
LA + N+ D ET+ + E+ + N A
Sbjct: 338 IFP--------YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF---------FAE 380
Query: 342 TLQSTGSLMEAQELFERCLE 361
L +A + ++ +E
Sbjct: 381 ILTDKNDFDKALKQYDLAIE 400
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 8e-08
Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 17/205 (8%)
Query: 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR 221
A A + + K +D A Y A+++ ++ V + NL Y+
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---------VFYSNLSACYVSVG 53
Query: 222 KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281
L+ +AL++K DY+ + A+ GK D+ +
Sbjct: 54 DLKKVVEMSTKALELKP--------DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105
Query: 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341
N R L A + +K + +K + +
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165
Query: 342 TLQSTGSLMEAQELFERCLEARKKL 366
+ ++ EA K+L
Sbjct: 166 SFFGIFKPELTFANYDESNEADKEL 190
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 34/244 (13%), Positives = 61/244 (25%), Gaps = 36/244 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +F K +A K + AL E +NL+ Y K +
Sbjct: 13 GNQFFRNKKYDDAIKYYNWAL--------ELKED-PVFYSNLSACYVSVGDLKKVVEMST 63
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+++ P+ + K DA G+ + A
Sbjct: 64 KALEL-----KPDYSK---VLLRRASANEGLGKFADAMFDLSVLSLN-------GDFNDA 108
Query: 250 DTMYHLATVLYLQGKENDSEAL--FLESIRILEENGEGDSMTCIRRLRYLA-----QTYV 302
L L Q E + E + + L ++
Sbjct: 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168
Query: 303 KANRLTDA-ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+ E G ++L ++ S +A LFE L+
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNL----YKRSPESYDKADESFTKAARLFEEQLD 224
Query: 362 ARKK 365
+
Sbjct: 225 KNNE 228
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 4e-17
Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 41/240 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +FL+ L +A+ L ++ P ++ LA K+ + +
Sbjct: 250 GIFHFLKNNLLDAQVLLQESI--------NLHPT-PNSYIFLALTLADKENSQEFFKFFQ 300
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+ + PE +++ GQ Y + + ++A +++A + N +
Sbjct: 301 KAVDL-----NPEYP---PTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENV 344
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
LA +LY QGK +SEA F E+ E + A+
Sbjct: 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV--------PTFFAEILTDRGDFDT 396
Query: 310 AETVQRKILHIM-ESSKGWNSL-------DTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
A + K + + T A +L + E
Sbjct: 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-11
Identities = 30/255 (11%), Positives = 61/255 (23%), Gaps = 57/255 (22%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
A L ALQ K+ +Y +
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYS-------------ATDEGYLVANDLLTKSTDMYHSLL 229
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI------ 246
P +A G F+ ++ L DA + ++ + + +
Sbjct: 230 SANTVD-DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLAD 288
Query: 247 -------------------DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287
+Y T YH + ++ +++ F ++ + EN
Sbjct: 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-- 346
Query: 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQST 346
LA K + T++E + + A L
Sbjct: 347 ------YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF---------FAEILTDR 391
Query: 347 GSLMEAQELFERCLE 361
G A + ++
Sbjct: 392 GDFDTAIKQYDIAKR 406
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 21/161 (13%)
Query: 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196
G E + + A N + K F++A Y AI++
Sbjct: 1 GSHMNGEPDIAQLKGLSPS----QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-- 54
Query: 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256
P + V + N+ Y+ LE + +AL+IK D++ + A
Sbjct: 55 ---DPNEP---VFYSNISACYISTGDLEKVIEFTTKALEIKP--------DHSKALLRRA 100
Query: 257 TVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297
+ G D+ + + + + R
Sbjct: 101 SANESLGNFTDAMFDL-SVLSLNGDFDGASIEPMLERNLNK 140
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 38/239 (15%), Positives = 65/239 (27%), Gaps = 32/239 (13%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +F EA K + A+ E DP+ +N++ Y +K
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAI--------ELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A++I P+ + A DA L + G+ D A
Sbjct: 84 KALEIK-----PDHSK---ALLRRASANESLGNFTDAMFDLS-VLSLN------GDFDGA 128
Query: 250 DTMYHLATVLYLQGKENDSEAL---FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306
L L Q + +E L ++L N S I + ++
Sbjct: 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188
Query: 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365
A + L + S+ L +ST R+
Sbjct: 189 YDTAYALLSDALQRLYSATD------EGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 32/121 (26%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL----------------YR 176
+G A K + A + + L
Sbjct: 388 LTDRGDFDTAIKQYDIAK--------RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439
Query: 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
++ F+ A L +A ++ P + A L Q L K+++A +E + +
Sbjct: 440 DEEKFNAAIKLLTKACEL-----DPRSEQ---AKIGLAQLKLQMEKIDEAIELFEDSAIL 491
Query: 237 K 237
Sbjct: 492 A 492
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 4e-16
Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 32/247 (12%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
QG + EA +L+ AL E P A+A +NLA + + + +A Y
Sbjct: 16 ANIKREQGNIEEAVRLYRKAL--------EVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
EAI+I P A+ N+G + ++ A Y RA++I +A
Sbjct: 68 EAIRI-----SPTFAD---AYSNMGNTLKEMQDVQGALQCYTRAIQINP--------AFA 111
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
D +LA++ G ++ A + ++++ + + LA TD
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD--------AYCNLAHCLQIVCDWTD 163
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369
+ +K++ I+ N L +V + L A+ CL+ L
Sbjct: 164 YDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKP 223
Query: 370 DHIQVCF 376
+
Sbjct: 224 PYEHPKD 230
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 7e-15
Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 32/201 (15%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
P A + NNLA + R + ++A LY +A+++ E A NL Q
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--------AAHSNLASVLQQQ 56
Query: 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280
KL++A +Y+ A++I +AD ++ L + + +I+I
Sbjct: 57 GKLQEALMHYKEAIRISP--------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA 340
+ LA + + + +A R L + D A LA
Sbjct: 109 AFADA--------HSNLASIHKDSGNIPEAIASYRTALKLKP--------DFPDAYCNLA 152
Query: 341 LTLQSTGSLMEAQELFERCLE 361
LQ + E ++ +
Sbjct: 153 HCLQIVCDWTDYDERMKKLVS 173
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 6e-10
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 24/155 (15%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
+ +NL Q +E+A Y +AL++ ++A +LA+VL QGK ++
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFP--------EFAAAHSNLASVLQQQGKLQEA 62
Query: 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328
+ E+IRI + + T + + A + + I
Sbjct: 63 LMHYKEAIRISPTFADA--------YSNMGNTLKEMQDVQGALQCYTRAIQINP------ 108
Query: 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363
A LA + +G++ EA + L+ +
Sbjct: 109 --AFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 6e-16
Identities = 37/235 (15%), Positives = 65/235 (27%), Gaps = 44/235 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y +G +A+ AL E DP A A LA +++ + A+ Y
Sbjct: 44 GLGYLQRGNTEQAKVPLRKAL--------EIDPSSADAHAALAVVFQTEMEPKLADEEYR 95
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+ + R +N G F Q++ E+A A + + +
Sbjct: 96 KALAS-----DSRNAR---VLNNYGGFLYEQKRYEEAYQRLLEASQDT------LYPERS 141
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+L V K ++ F +S+R+ +A K
Sbjct: 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV--------ALEMADLLYKEREYVP 193
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLAL---TLQSTGSLMEAQELFERCLE 361
A + A L L + A +
Sbjct: 194 ARQYYDLFAQGGGQN-----------ARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 8e-13
Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 22/149 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + Q + EA + L A Q+ P + NL + K +A+ +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTL------YPERSRVFENLGLVSLQMKKPAQAKEYFE 165
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+++++ + + +R+ A YY+ + G A
Sbjct: 166 KSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG--------QNA 209
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRI 278
++ + + + + + L+ R+
Sbjct: 210 RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 28/203 (13%), Positives = 61/203 (30%), Gaps = 30/203 (14%)
Query: 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218
+ A L Y + ++A+ +A++I P A L +
Sbjct: 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSAD---AHAALAVVFQ 82
Query: 219 VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+ + + A Y +AL A + + LY Q + ++ LE+ +
Sbjct: 83 TEMEPKLADEEYRKALASDS--------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQD 134
Query: 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338
L ++ + A+ K L + N + A
Sbjct: 135 TLYPERSRVFE------NLGLVSLQMKKPAQAKEYFEKSLRL-------NR-NQPSVALE 180
Query: 339 LALTLQSTGSLMEAQELFERCLE 361
+A L + A++ ++ +
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQ 203
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 16/108 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G K A+A++ F +L + + S +A+L ++ + A Y
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSL--------RLNRNQPSVALEMADLLYKEREYVPARQYYD 199
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+ ++ + + V + A +Y + ++
Sbjct: 200 LFAQGGGQN--AR------SLLLGIRLAKVFEDRDTAASYGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 39/196 (19%)
Query: 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACT 228
++ + R D+ L+ K E+ A+ LG YL + E A
Sbjct: 10 HSSGLVPRGSHMGDQN---PLKTDKGRDEARD--------AYIQLGLGYLQRGNTEQAKV 58
Query: 229 YYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM 288
+AL+I AD LA V + + ++ + +++ N
Sbjct: 59 PLRKALEIDP--------SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---- 106
Query: 289 TCIRRLRY-LAQTYVKANRLTDAETVQRKILHIMESSKGWNSL--DTVIAAEGLALTLQS 345
+ + R +A + ++L + E L L
Sbjct: 107 -----VLNNYGGFLYEQKRYEEAYQRLLEASQ--------DTLYPERSRVFENLGLVSLQ 153
Query: 346 TGSLMEAQELFERCLE 361
+A+E FE+ L
Sbjct: 154 MKKPAQAKEYFEKSLR 169
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 6e-16
Identities = 34/232 (14%), Positives = 78/232 (33%), Gaps = 36/232 (15%)
Query: 133 YFLQGKLAE-AEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEA 191
Y + G E A + A + A + V+ D+A Y A
Sbjct: 100 YLMVGHKNEHARRYLSKATT--------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151
Query: 192 IKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251
++++ + +G Y + + A ++ +AL I +
Sbjct: 152 AQLMKGCH--------LPMLYIGLEYGLTNNSKLAERFFSQALSIAP--------EDPFV 195
Query: 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY-LAQTYVKANRLTDA 310
M+ + V + G+ +E FL+++ ++ G ++ L L K + +A
Sbjct: 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255
Query: 311 ETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
R+ L ++ +++ +++ + G+ A + F L
Sbjct: 256 LDYHRQALVLIPQNASTYSA---------IGYIHSLMGNFENAVDYFHTALG 298
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 17/150 (11%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +Y L AE+ F AL P + + + + AE +L
Sbjct: 166 GLEYGLTNNSKLAERFFSQAL--------SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217
Query: 190 EAIKILQESFG-PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248
+A++ ++ + +NLG +K +A Y+ +AL +
Sbjct: 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--------QN 269
Query: 249 ADTMYHLATVLYLQGKENDSEALFLESIRI 278
A T + + L G ++ F ++ +
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGL 299
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 19/140 (13%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGE-RDPHVASACNNLAELYRVKKAFDKAEPLYLEA 191
F G+ AEK FL AL++ K E NNL + R K + +A + +A
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Query: 192 IKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251
+ + P++ + +G + + E+A Y+ AL ++ D +
Sbjct: 263 LVL-----IPQNAS---TYSAIGYIHSLMGNFENAVDYFHTALGLRR--------DDTFS 306
Query: 252 MYHLATVLYLQGKENDSEAL 271
+ L + + DSEA
Sbjct: 307 VTMLGHCIEMYIG--DSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 34/260 (13%), Positives = 70/260 (26%), Gaps = 52/260 (20%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
++ KL + E+DP AS ++ L
Sbjct: 29 AERHYYNCDFKMCYKLTSVVM--------EKDPFHASCLPVHIGTLVELNKANELFYLSH 80
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRV------LG 242
+ + + + V++ +G +YL+ K E A Y +A ++ G
Sbjct: 81 KLVDLYPSNP--------VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYG 132
Query: 243 H-----GNID---------------YADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282
H D M ++ L +E F +++ I E+
Sbjct: 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Query: 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAA-EGLAL 341
+ + + AE L +++ ++D L
Sbjct: 193 PFV--------MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 342 TLQSTGSLMEAQELFERCLE 361
+ EA + + L
Sbjct: 245 VCRKLKKYAEALDYHRQALV 264
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G K AEA AL P AS + + ++ + F+ A +
Sbjct: 243 GHVCRKLKKYAEALDYHRQAL--------VLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYE 231
A+ + +D + LG + +A +
Sbjct: 295 TALGL-----RRDDT---FSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 16/95 (16%)
Query: 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243
+E + E++ LQE+ +L + + + ++
Sbjct: 7 SETVIPESVDGLQENLD--------VVVSLAERHYYNCDFKMCYKLTSVVMEKDP----- 53
Query: 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+A + L K N+ L + + +
Sbjct: 54 ---FHASCLPVHIGTLVELNKANELFYLSHKLVDL 85
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-15
Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 41/237 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+Y +A AL + DP A AE+Y+ K DKA+ +
Sbjct: 15 AMEYMRGQDYRQATASIEDAL--------KSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRVLGHGNIDY 248
+A+ I P+ +N G F + + ++ Y+++AL
Sbjct: 67 QALSI-----KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALADP------TYPTP 112
Query: 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLT 308
+ QG+ +EA S+ + + LA+T + A +L
Sbjct: 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA--------FKELARTKMLAGQLG 164
Query: 309 DAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365
DA+ +K +E V+ A+ L L + +L AQ +E + +
Sbjct: 165 DADYYFKKYQSRVE----------VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 31/214 (14%)
Query: 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218
E+ V++ LA Y + + +A +A+K P++ A+ + Y
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKNEL---AWLVRAEIYQ 53
Query: 219 VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ-GKENDSEALFLESIR 277
+ + A + +AL IK D A+ + L + + +S A F +++
Sbjct: 54 YLKVNDKAQESFRQALSIKP--------DSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105
Query: 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337
+ K + AE ++ L A +
Sbjct: 106 DPTYPTPYIANL------NKGICSAKQGQFGLAEAYLKRSLAA-------QP-QFPPAFK 151
Query: 338 GLALTLQSTGSLMEAQELFERCLEARKKLMPQDH 371
LA T G L +A F++ + L D
Sbjct: 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 29/129 (22%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
QG+ AE +L P A LA + A+ + + +
Sbjct: 126 QGQFGLAEAYLKRSL--------AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
+ + +L + + + L +A YE +++ ++ +
Sbjct: 178 EV----------LQADDLLLGWKIAKALGNAQAAYEYEAQLQ--------ANFPYSEELQ 219
Query: 256 ATVLYLQGK 264
L G+
Sbjct: 220 T---VLTGQ 225
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 7e-15
Identities = 27/242 (11%), Positives = 71/242 (29%), Gaps = 40/242 (16%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
F++ + + + L E DP+ +K +
Sbjct: 312 ADTLFVRSRFIDVLAITTKIL--------EIDPYNLDVYPLHLASLHESGEKNKLYLISN 363
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + E V + +G +YL K+ +A Y+ ++ + +
Sbjct: 364 DLVDRHPEKA--------VTWLAVGIYYLCVNKISEARRYFSKSSTMDP--------QFG 407
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
A ++G+ + + + + + R+ + +L +++ +
Sbjct: 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP--------YLFLGMQHMQLGNILL 459
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369
A + + D ++ E L + + + A F+ L KK
Sbjct: 460 ANEYLQSSYAL-------FQYDPLLLNE-LGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511
Query: 370 DH 371
+
Sbjct: 512 EK 513
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 8e-14
Identities = 23/229 (10%), Positives = 58/229 (25%), Gaps = 33/229 (14%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
G+ + + + +R P A + Y +A + ++
Sbjct: 349 LHESGEKNKLYLISNDLV--------DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ FGP A+ + ++ + + A + Y A ++
Sbjct: 401 T-MDPQFGP-------AWIGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPY 444
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
L G + S + + + L L + + A
Sbjct: 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLL--------LNELGVVAFNKSDMQTAIN 496
Query: 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+ L +++ ++ L + A + + L
Sbjct: 497 HFQNALLLVKKTQSNEK-PWAATWANLGHAYRKLKMYDAAIDALNQGLL 544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 20/188 (10%), Positives = 52/188 (27%), Gaps = 25/188 (13%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ ++G+ +A + +A + L + A +
Sbjct: 417 FAIEGEHDQAISAYTTAAR--------LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ D + + LG + ++ A +++ AL + + +A T
Sbjct: 469 AL-----FQYDP---LLLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQSNEKPWAATW 519
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+L + + + + + + +A Y+ A T
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV--------HTAIALVYLHKKIPGLAIT 571
Query: 313 VQRKILHI 320
+ L I
Sbjct: 572 HLHESLAI 579
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 5e-12
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 17/127 (13%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
F + + A F +AL + + A+ NL YR K +D A + +
Sbjct: 485 AFNKSDMQTAINHFQNAL-LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ D + YL ++ A T+ +L I + +
Sbjct: 544 LL-----STNDAN---VHTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMAS 587
Query: 253 YHLATVL 259
L L
Sbjct: 588 DLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 39/240 (16%), Positives = 65/240 (27%), Gaps = 38/240 (15%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFG--------ERDPHVASACNNLAELYRVKKAF 181
+ Y G A A+ L + + A N L E +K
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE 183
Query: 182 DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241
A L ++ I E+ + GQ Y + A Y+ AL +
Sbjct: 184 KNANKLLMQDGGIKLEAS---------MCYLRGQVYTNLSNFDRAKECYKEALMV----- 229
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301
+ + L + L E L L +E+ + +L
Sbjct: 230 ---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK----T 282
Query: 302 VKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+ L AE I + +SS A TL ++ + + LE
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLC---------KADTLFVRSRFIDVLAITTKILE 333
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 24/179 (13%), Positives = 45/179 (25%), Gaps = 47/179 (26%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQ------EAKEGFG------------------------E 159
G+ Y A++ + AL EA + E
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV 219
+ S + +AE YL +I L++S V
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAE-DYLSSINGLEKSS--------DLLLCKADTLFV 317
Query: 220 QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+ + D + L+I D L+ G++N + + +
Sbjct: 318 RSRFIDVLAITTKILEIDP--------YNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 9e-15
Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 20/246 (8%)
Query: 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG-ERDPHVASACNNLAELYRV 177
K + L+G+ A + A + ++ + + N A +Y
Sbjct: 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH 106
Query: 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL--VQRKLEDACTYYERALK 235
+ + + ++ P I G L + E A +E+AL+
Sbjct: 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166
Query: 236 IKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295
K + LA Y S+ + + N + + +
Sbjct: 167 KKP--------KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLAL 217
Query: 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQEL 355
L + + + E + + L A + +A EL
Sbjct: 218 KLHKMREEGEEEGEGEKLVEEALEKAP--------GVTDVLRSAAKFYRRKDEPDKAIEL 269
Query: 356 FERCLE 361
++ LE
Sbjct: 270 LKKALE 275
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 2e-12
Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 65/263 (24%)
Query: 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV 177
V + + Y + + +A +L AL E P+ A + YR
Sbjct: 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL--------EYIPNNAYLHCQIGCCYRA 293
Query: 178 K------------KAFDKAEPLYLEAIKILQE--SFGPEDIRIGVAFHNLGQFYLVQRKL 223
K K L A+ L++ R L + + +
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR---VCSILASLHALADQY 350
Query: 224 EDACTYYERALKIKGRVLGHGNIDYADTM---YHLATVLYLQGKENDSEAL--FLESIRI 278
E+A Y+++ + Q K D +A+ F+E ++I
Sbjct: 351 EEAEYYFQKEFSK--------ELTPVAKQLLHLRYGNFQLYQMKCED-KAIHHFIEGVKI 401
Query: 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338
+++ E + M +L+ +A+ + N D+E A
Sbjct: 402 NQKSREKEKM--KDKLQKIAKMRLSKNG-ADSE-----------------------ALHV 435
Query: 339 LALTLQSTGSLMEAQELFERCLE 361
LA + + +A E ER LE
Sbjct: 436 LAFLQELNEKMQQADEDSERGLE 458
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-11
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 26/167 (15%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ + KL E ++ L++A E + ++ C+ LA L+ + +++AE + +
Sbjct: 306 MYGKRKLLELIGHAVAHLKKADE----ANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLED-ACTYYERALKIKGRVLGHGNI----- 246
+ + G F L Q K ED A ++ +KI + +
Sbjct: 362 SK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 247 -----------DYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282
++ ++ LA + L K ++ +
Sbjct: 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 3e-11
Identities = 37/230 (16%), Positives = 74/230 (32%), Gaps = 20/230 (8%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
+ L + E + + A+ CN LA L +K + A +A +++
Sbjct: 28 ENSLDDFEDKVFYRTEF------QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 196 QESFGPE-DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254
Q+ + +IR V + N Y +L D Y ++ + + I+ +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 255 LATVLYLQGKENDSEAL--FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
G + A F +++ +N E L + +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPE-----FTSGLAIASYRLDNWPPSQNAID 196
Query: 313 VQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
R+ + + ++ L A L + E ++L E LE
Sbjct: 197 PLRQAIRLNPDNQYLKVLL-----ALKLHKMREEGEEEGEGEKLVEEALE 241
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 1e-10
Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 41/201 (20%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA----ELYRVKKAFDKAEPLYLEA 191
A A+ +P LA ++ + + E L EA
Sbjct: 188 WPPSQNAIDPLRQAI--------RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239
Query: 192 IKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251
++ P + +FY + + + A ++AL+ + A
Sbjct: 240 LEK-----APGVTD---VLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYL 283
Query: 252 MYHLATVLYLQGKENDSEA------------LFLESIRILEENGEGDSMTCIRRLRYLAQ 299
+ + + + L ++ L++ E + R LA
Sbjct: 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILAS 342
Query: 300 TYVKANRLTDAETVQRKILHI 320
+ A++ +AE +K
Sbjct: 343 LHALADQYEEAEYYFQKEFSK 363
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 1e-14
Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 24/150 (16%)
Query: 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194
+ +A+ P A LA+ E + +
Sbjct: 1 MTADGPRELLQLRAAV--------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL 52
Query: 195 LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254
P A LG+ Q++ +A ++A ++
Sbjct: 53 -----HPGHPE---AVARLGRVRWTQQRHAEAAVLLQQASDAAP--------EHPGIALW 96
Query: 255 LATVLYLQGKENDSEALFLESIRILEENGE 284
L L G+ + A + + ++L E
Sbjct: 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 20/153 (13%), Positives = 33/153 (21%), Gaps = 24/153 (15%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G E L P A L + ++ +A L
Sbjct: 30 ADAELGMGDTTAGEMAVQRGL--------ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A PE LG + E A Y RA ++ +
Sbjct: 82 QASDA-----APEHPG---IALWLGHALEDAGQAEAAAAAYTRAHQLLP--------EEP 125
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEEN 282
L + L + + +
Sbjct: 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-14
Identities = 32/237 (13%), Positives = 62/237 (26%), Gaps = 44/237 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEP--- 186
F AEA ++F + + N A Y +D A+
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLE--------AKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246
Y + F G+ + + + A Y+ A+ +
Sbjct: 62 TYFSKVNA--------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DT 105
Query: 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306
D + + Y +G + + IR + + L Q Y
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV--------FYELGQAYYYNKE 157
Query: 307 LTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALT-LQSTGSLMEAQELFERCLE 361
A++ K+L + G+ A A+ +E+ +E
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWR-------ARANAAQDPDTKQGLAKPYYEKLIE 207
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 5e-14
Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 27/194 (13%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G+ +G+ + A + + +A+ +RD + + K F A
Sbjct: 81 GKILMKKGQDSLAIQQYQAAV--------DRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ I+ D + F+ LGQ Y ++ A + + + L++K +
Sbjct: 133 KQIRP-----TTTDPK---VFYELGQAYYYNKEYVKADSSFVKVLELKP--------NIY 176
Query: 250 DTMYHLATVLYLQGKENDSE---ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306
A Q + + + I + G I Y+A Y
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236
Query: 307 LTDAETVQRKILHI 320
A+ + IL +
Sbjct: 237 KVKADAAWKNILAL 250
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 19/138 (13%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK---AEP 186
G+ Y+ + +A+ F+ L E P++ A + K A+P
Sbjct: 149 GQAYYYNKEYVKADSSFVKVL--------ELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200
Query: 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246
Y + I++ + A + +Y + R A ++ L + +
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DP 252
Query: 247 DYADTMYHLATVLYLQGK 264
+ L L
Sbjct: 253 TNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 16/201 (7%), Positives = 45/201 (22%), Gaps = 37/201 (18%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
A+ + +A ++ + ++ Y K +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSP---YIYNRRAVCYYELAKYD 54
Query: 225 DACTY---YERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281
A Y + + + +L +G+++ + + ++
Sbjct: 55 LAQKDIETYFSKVNA--------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106
Query: 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLA 340
+ + + A K + K + L
Sbjct: 107 RLDM--------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE---------LG 149
Query: 341 LTLQSTGSLMEAQELFERCLE 361
++A F + LE
Sbjct: 150 QAYYYNKEYVKADSSFVKVLE 170
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 1e-13
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 24/143 (16%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
G + +L +L P L Y + +D A PL ++ +
Sbjct: 55 TGAVDRGTELLERSL--------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA- 105
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
P + LG + ++A ++ AL ++ + +
Sbjct: 106 ----NPINF---NVRFRLGVALDNLGRFDEAIDSFKIALGLRP--------NEGKVHRAI 150
Query: 256 ATVLYLQGKENDSEALFLESIRI 278
A G+ ++ F ++ +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANEL 173
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 2e-13
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 24/149 (16%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + G+ ++A L + D +L Y A D+ L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVY--------DADAFDVDVALHLGIAYVKTGAVDRGTELLE 66
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
++ P+++ LG Y+ +K + A + + N
Sbjct: 67 RSLAD-----APDNV---KVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINF 110
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRI 278
+ + L L G+ +++ F ++ +
Sbjct: 111 NVRFRLGVALDNLGRFDEAIDSFKIALGL 139
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 6e-11
Identities = 26/204 (12%), Positives = 50/204 (24%), Gaps = 38/204 (18%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
D + + + +A L + D+ +LG Y+
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA-----DAFDVD---VALHLGIAYVKT 55
Query: 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280
++ ER+L D L K + + L ++
Sbjct: 56 GAVDRGTELLERSLADAP--------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 281 ENGEGDSMTCIRRLRY--LAQTYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAE 337
N L R +A + L + K +
Sbjct: 108 INFNV----------RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA-------- 149
Query: 338 GLALTLQSTGSLMEAQELFERCLE 361
+A + + G EA F++ E
Sbjct: 150 -IAFSYEQMGRHEEALPHFKKANE 172
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-08
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 16/105 (15%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y K A L + E +P + L FD+A + A+
Sbjct: 86 YVQVQKYDLAVPLLIKVA--------EANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+ P + + + Y + E+A ++++A ++
Sbjct: 138 GL-----RPNEGK---VHRAIAFSYEQMGRHEEALPHFKKANELD 174
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 3e-13
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 24/146 (16%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y+ QG EA + + AL E DP A A NL Y + +D+A Y +A+
Sbjct: 11 YYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
++ P A++NLG Y Q ++A YY++AL++ A+
Sbjct: 63 EL-----DPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDP--------RSAEAW 106
Query: 253 YHLATVLYLQGKENDSEALFLESIRI 278
Y+L Y QG +++ + +++ +
Sbjct: 107 YNLGNAYYKQGDYDEAIEYYQKALEL 132
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 5e-10
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
A A NL Y + +D+A Y +A+++ P A++NLG Y Q +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA---EAWYNLGNAYYKQGDYD 52
Query: 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+A YY++AL++ A+ Y+L Y QG +++ + +++ +
Sbjct: 53 EAIEYYQKALELDP--------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 4e-08
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
QG EA + + AL E DP A A NL Y + +D+A Y +A+++
Sbjct: 48 QGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL- 98
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
P A++NLG Y Q ++A YY++AL++
Sbjct: 99 ----DPRSA---EAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 6e-13
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 24/149 (16%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +A + F A++E + A N A L ++A Y
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYD 81
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+++ A++ G Y+V+ ++A +E+AL+ ++
Sbjct: 82 KALEL-----DSSAAT---AYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENG 125
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRI 278
D Y L TVL + + ++ +
Sbjct: 126 DLFYMLGTVLVKLEQPKLALPYLQRAVEL 154
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 9e-13
Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 24/146 (16%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+L A + AL E D A+A +Y VK+ + +A+ ++ +A+
Sbjct: 67 LSSVNELERALAFYDKAL--------ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ G E+ F+ LG + + + A Y +RA+++ + +
Sbjct: 119 RA-----GMENG---DLFYMLGTVLVKLEQPKLALPYLQRAVELNE--------NDTEAR 162
Query: 253 YHLATVLYLQGKENDSEALFLESIRI 278
+ L +G +++ + F
Sbjct: 163 FQFGMCLANEGMLDEALSQFAAVTEQ 188
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 24/146 (16%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y ++ EA+ +F AL L + + A P A+
Sbjct: 101 YVVKEMYKEAKDMFEKAL--------RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
++ D A G + L++A + + + +AD
Sbjct: 153 EL-----NENDTE---ARFQFGMCLANEGMLDEALSQFAAVTEQDP--------GHADAF 196
Query: 253 YHLATVLYLQGKENDSEALFLESIRI 278
Y+ + + + ++I I
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAIDI 222
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 7e-11
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 24/132 (18%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ A A+ E + + A + D+A +
Sbjct: 135 LVKLEQPKLALPYLQRAV--------ELNENDTEARFQFGMCLANEGMLDEALSQFAAVT 186
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ P AF+N G Y + E A ++A+ I+ D+ +
Sbjct: 187 EQ-----DPGHAD---AFYNAGVTYAYKENREKALEMLDKAIDIQP--------DHMLAL 230
Query: 253 YHLATVLYLQGK 264
+ + +
Sbjct: 231 HAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 6e-09
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 46/228 (20%)
Query: 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKI 194
+ + + P + + + ++KA + +AI+
Sbjct: 1 MGSSHHHHHHSS--------GLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE 52
Query: 195 LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254
ED + + N +LE A +Y++AL++ A Y
Sbjct: 53 -----NKEDA---IPYINFANLLSSVNELERALAFYDKALELDS--------SAATAYYG 96
Query: 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314
V ++ +++ +F +++R ENG+ M L VK + A
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM--------LGTVLVKLEQPKLALPYL 148
Query: 315 RKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
++ + + ++ + L + G L EA F E
Sbjct: 149 QRAVELNENDTEARFQ---------FGMCLANEGMLDEALSQFAAVTE 187
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 5e-12
Identities = 42/243 (17%), Positives = 68/243 (27%), Gaps = 50/243 (20%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +G L +A+ +DP A A L + A
Sbjct: 72 GLKRLKEGDLPVTILFMEAAIL--------QDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+++ P ++ A L Y +DAC + +K N Y
Sbjct: 124 RCLEL-----QPNNL---KALMALAVSYTNTSHQQDACEALKNWIKQ--------NPKYK 167
Query: 250 DTMYHLATVLYLQGKENDSE----------ALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
+ + L + + S L+LE+ + + D T L
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG------LGV 221
Query: 300 TYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358
+ + A L + E WN L TL + EA E + R
Sbjct: 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNR---------LGATLANGDRSEEAVEAYTR 272
Query: 359 CLE 361
LE
Sbjct: 273 ALE 275
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 30/147 (20%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
L ++L+L A + D L L+ + F++A + A+ +
Sbjct: 190 SSVLEGVKELYLEAAHQ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV- 242
Query: 196 QESFGPEDI----RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251
PED R+G N + E+A Y RAL+I+ + +
Sbjct: 243 ----RPEDYSLWNRLGATLANGD-------RSEEAVEAYTRALEIQP--------GFIRS 283
Query: 252 MYHLATVLYLQGKENDSEALFLESIRI 278
Y+L G ++ + FL ++ +
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSL 310
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 23/228 (10%), Positives = 57/228 (25%), Gaps = 26/228 (11%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
+ A+ S + + E + + + + + +E Y +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
+ + G L + L + E A+ + A+ L
Sbjct: 62 FKDW--------PGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFL 105
Query: 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315
E + + + N + L LA +Y + DA +
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKA--------LMALAVSYTNTSHQQDACEALK 157
Query: 316 KILHIM-ESSKGWNSLDTVIAAEG-LALTLQSTGSLMEAQELFERCLE 361
+ + + ++ + + L +EL+
Sbjct: 158 NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
+ EA + + AL E P + NL A+ +A +L A+ +
Sbjct: 260 GDRSEEAVEAYTRAL--------EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311
Query: 196 QESFGPEDIRIGVAFHNLGQFY------LVQRKLEDAC-----TYYERALKIK 237
++S + + N+ + Q +L A RA +
Sbjct: 312 RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLD 364
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 7e-12
Identities = 39/243 (16%), Positives = 67/243 (27%), Gaps = 45/243 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +G L A LF +A+Q +DP A L + A
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQ--------QDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK----------GR 239
+++ P++ A L + + AC L+
Sbjct: 123 RCLEL-----KPDN---QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174
Query: 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
G + + + L + + LFL ++R+ + + D L
Sbjct: 175 GAGGAGLGPS---KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG------LGV 225
Query: 300 TYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358
+ + A L + WN L TL + EA + R
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNK---------LGATLANGNQSEEAVAAYRR 276
Query: 359 CLE 361
LE
Sbjct: 277 ALE 279
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 7e-09
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 19/150 (12%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ L G+ +A F +AL P+ N L ++A Y A+
Sbjct: 227 FNLSGEYDKAVDCFTAAL--------SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK---GRVLGHGNIDYA 249
++ P IR + +NLG + +A ++ AL ++ G G
Sbjct: 279 EL-----QPGYIR---SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRIL 279
+ L L + G+ + A + L
Sbjct: 331 NIWSTLRLALSMLGQSDAYGAADARDLSTL 360
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 28/223 (12%)
Query: 147 LSALQEAKEGFGERDPHVASACNNLAELYRVKKAF-DKAEPLYLEAIKILQESFGPEDIR 205
SA++ + + + + AE + + D Y + + +E+ +
Sbjct: 7 KSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP- 65
Query: 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKE 265
G L + L +A +E A++ + + + +L T +E
Sbjct: 66 ---QPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQE 114
Query: 266 NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM-ESS 324
+ + + + +N L LA ++ + A + R L +
Sbjct: 115 LLAISALRRCLELKPDNQTA--------LMALAVSFTNESLQRQACEILRDWLRYTPAYA 166
Query: 325 KGWNSLDTVIAAEGLALTLQSTGSLM------EAQELFERCLE 361
+ GL + + GSL+ E +ELF +
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 29/157 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + G+ A LF AL + +P A LA + A
Sbjct: 12 GVQLYALGRYDAALTLFERAL--------KENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 190 EAIKILQESFGPEDIR----IGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVL 241
+ P + + A+ L + + LE A + + A ++
Sbjct: 64 TLVAR-----TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--- 115
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
YA V L G+ + +EA +++ +
Sbjct: 116 -----RYAPLHLQRGLVYALLGERDKAEASLKQALAL 147
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 25/135 (18%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
+G L +A + A +P A +Y + DKAE +A+ +
Sbjct: 97 KGYLEQALSVLKDAE--------RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
L + YL +L++A Y +AL+ D
Sbjct: 149 DTP---------EIRSALAELYLSMGRLDEALAQYAKALEQAP--------KDLDLRVRY 191
Query: 256 ATVLYLQGKENDSEA 270
A+ L L+GK ++
Sbjct: 192 ASALLLKGKAEEAAR 206
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 32/200 (16%)
Query: 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDA 226
L +D A L+ A+K P+D A + L + L + A
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKE-----NPQDP---EALYWLARTQLKLGLVNPA 58
Query: 227 CTYYERALKIK-GRVLGHGN--IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283
+ + + G+ Y +G + ++ ++ R+
Sbjct: 59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 284 EGDSMTCIRRLRY--LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341
+ Y AE ++ L + ++ + ++ LA
Sbjct: 119 PL----------HLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA---------LAE 159
Query: 342 TLQSTGSLMEAQELFERCLE 361
S G L EA + + LE
Sbjct: 160 LYLSMGRLDEALAQYAKALE 179
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-07
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
G+ +AE AL + + LAELY D+A Y +A++
Sbjct: 131 LGERDKAEASLKQAL--------ALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQ- 180
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
P+D+ L++ K E+A
Sbjct: 181 ----APKDLD---LRVRYASALLLKGKAEEAARAAALEHHHH 215
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 18/138 (13%), Positives = 40/138 (28%), Gaps = 21/138 (15%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + + GK +A+K+F + D + A L + +++A Y
Sbjct: 25 GFNQYQAGKWDDAQKIFQALC--------MLDHYDARYFLGLGACRQSLGLYEQALQSYS 76
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + R + + +L L+ A + + A + +
Sbjct: 77 YGALM-----DINEPR---FPFHAAECHLQLGDLDGAESGFYSARALAA-----AQPAHE 123
Query: 250 DTMYHLATVLYLQGKEND 267
+L D
Sbjct: 124 ALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 20/146 (13%), Positives = 36/146 (24%), Gaps = 22/146 (15%)
Query: 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218
L +D A+ ++ + D R F LG
Sbjct: 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDAR---YFLGLGACRQ 63
Query: 219 VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
E A Y + +I+ +H A G + +E+ F + +
Sbjct: 64 SLGLYEQALQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Query: 279 LEENGEGDSMTCIRRLRYLAQTYVKA 304
L A ++A
Sbjct: 116 AAAQPA------HEALAARAGAMLEA 135
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 47/243 (19%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G+ G+LA+A F +A+ + DP A A ++ A P
Sbjct: 10 GKKLLAAGQLADALSQFHAAV--------DGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI----------KGR 239
+ I + + A G L Q KL++A +++ LK + +
Sbjct: 62 KVIAL-----KMDFTA---ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113
Query: 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
++ D + A + + + + + + E +R LR A+
Sbjct: 114 LV---KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE------LRELR--AE 162
Query: 300 TYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358
++K A + + + ++++ + ++ G +
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYK---------ISTLYYQLGDHELSLSEVRE 213
Query: 359 CLE 361
CL+
Sbjct: 214 CLK 216
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 27/240 (11%), Positives = 66/240 (27%), Gaps = 35/240 (14%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ GK A + +A L + D+AE + + +
Sbjct: 47 FLAMGKSKAALPDLTKVI--------ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98
Query: 193 KI-------LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245
K + + A T+ ++ L++
Sbjct: 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------C 150
Query: 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN 305
+ A+ A +G+ + + + ++ +N E ++ Y +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA--------FYKISTLYYQLG 202
Query: 306 RLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGL---ALTLQSTGSLMEAQELFERCLE 361
+ + R+ L + + + + V L A L G +A +E ++
Sbjct: 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 31/243 (12%), Positives = 65/243 (26%), Gaps = 34/243 (13%)
Query: 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK 183
+ D F A L E A AE + + K
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKIL--------EVCVWDAELRELRAECFIKEGEPRK 172
Query: 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR---- 239
A A K+ ++ AF+ + Y E + + LK+
Sbjct: 173 AISDLKAASKL-----KSDNTE---AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224
Query: 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
+ + + + A L G+ D+ + + ++ E + +
Sbjct: 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS----KERICH 280
Query: 300 TYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358
+ K + +A + ++L + ++ A EA + +E
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKD---------RAEAYLIEEMYDEAIQDYEA 331
Query: 359 CLE 361
E
Sbjct: 332 AQE 334
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 31/204 (15%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
L + A + A+ P++ +A++ +L K +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDNY---IAYYRRATVFLAMGKSK 54
Query: 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI------ 278
A + + +K D+ +L QGK +++E F + ++
Sbjct: 55 AALPDLTKVIALKM--------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106
Query: 279 -LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337
E + ++RLR A T A T KIL + + E
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRE 158
Query: 338 GLALTLQSTGSLMEAQELFERCLE 361
A G +A + +
Sbjct: 159 LRAECFIKEGEPRKAISDLKAASK 182
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 18/163 (11%), Positives = 46/163 (28%), Gaps = 24/163 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL-- 187
Y+ G + L + D + ++ ++ K + AE L
Sbjct: 195 STLYYQLGDHELSLSEVRECL--------KLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246
Query: 188 ---YLEAIKILQE--SFGPEDIRIGV-AFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241
Y +A + P V + + + K +A L++
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM----- 301
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
D + + A ++ +++ + + E + +
Sbjct: 302 ---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-11
Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 20/143 (13%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
+ L+ +++ D A LY A + +A+ I
Sbjct: 18 TLQQEVI----LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI- 72
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
P+ F+ LG + + A ++ L++ Y +
Sbjct: 73 ----RPDMPE---VFNYLGIYLTQAGNFDAAYEAFDSVLELDP--------TYNYAHLNR 117
Query: 256 ATVLYLQGKENDSEALFLESIRI 278
LY G++ ++ L +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQD 140
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 32/233 (13%), Positives = 58/233 (24%), Gaps = 40/233 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y G A A F AL P + N L FD A +
Sbjct: 50 GVLYDSLGLRALARNDFSQAL--------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+++ P A N G + + A + + +
Sbjct: 102 SVLEL-----DPTYN---YAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDP 145
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
L ++ E L + ++ G ++ + + + +
Sbjct: 146 FRSLWLYLAEQKLDEKQAKEVLK-QHFEKSDKEQWGWNI-----VEFYLGNISEQTLMER 199
Query: 310 AETVQRKILHIMES-SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+ + E S+ L S G L A LF+ +
Sbjct: 200 LKADATDNTSLAEHLSETNFY---------LGKYYLSLGDLDSATALFKLAVA 243
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 22/149 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + G+ A+ L+ + DP+ L L K +A+ +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFY--------QDDPNDPFRSLWLY-LAEQKLDEKQAKEVLK 168
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ + + E + LG Q +E + +
Sbjct: 169 QHFEKSDK----EQWGWNIVEFYLGNISE-QTLMERLKADATDNTSL--------AEHLS 215
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRI 278
+T ++L G + + ALF ++
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN 244
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 10/97 (10%), Positives = 24/97 (24%), Gaps = 16/97 (16%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
Q + + H++ L + Y D A L+ A+
Sbjct: 194 QTLMERLKADATDNT--------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN- 244
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232
++ V + + +D ++
Sbjct: 245 -------NVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 20/156 (12%), Positives = 34/156 (21%), Gaps = 23/156 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G LAEA F + Q P A +L + A
Sbjct: 28 GLSMLKLANLAEAALAFEAVCQ--------AAPEREEAWRSLGLTQAENEKDGLAIIALN 79
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK-------GRVLG 242
A + P+DI L + + A L + L
Sbjct: 80 HARML-----DPKDI---AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+ + + L ++ +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-09
Identities = 25/215 (11%), Positives = 47/215 (21%), Gaps = 37/215 (17%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
+A + + PE A+ +LG K
Sbjct: 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA-----APEREE---AWRSLGLTQAENEKDG 72
Query: 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI------ 278
A A + LA + N + A +
Sbjct: 73 LAIIALNHARMLDP--------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 124
Query: 279 -LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAA 336
N + D ++ + N + T+ L + ++
Sbjct: 125 LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA-------- 176
Query: 337 EGLALTLQSTGSLMEAQELFERCLEARKKLMPQDH 371
L + + + A R +E L P D
Sbjct: 177 -SLGVLYNLSNNYDSAAANLRRAVE----LRPDDA 206
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 20/160 (12%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y L A A+ E P A N L +A Y A+
Sbjct: 182 YNLSNNYDSAAANLRRAV--------ELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK---GRVLGHGNIDYA 249
I P +R +N+ Y + + A RA+ ++ G + +
Sbjct: 234 DI-----NPGYVR---VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285
Query: 250 DTMYH-LATVLYLQGKENDSEALFLESIRILEENGEGDSM 288
+M+ +L + + + E + +++ + SM
Sbjct: 286 RSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSM 325
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 6e-11
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
QG EA + + AL E DP+ A A NL Y + +D+A Y +A+++
Sbjct: 22 QGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL- 72
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
P + A++NLG Y Q ++A YY++AL++ + A+ +L
Sbjct: 73 ----DPNNA---EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAKQNL 117
Query: 256 ATVLYLQG 263
QG
Sbjct: 118 GNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 5e-10
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR 221
+ A A NL Y + +D+A Y +A+++ P + A++NLG Y Q
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYKQG 57
Query: 222 KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
++A YY++AL++ + A+ Y+L Y QG +++ + +++ +
Sbjct: 58 DYDEAIEYYQKALELDP--------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-11
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + Q +A + A+ E DP + NN A +Y +K F +
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAI--------ELDPSNITFYNNKAAVYFEEKKFAECVQFCE 66
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+A+++ + I A G + Q L A ++ R+L
Sbjct: 67 KAVEV-GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218
A A +L +K F+KA Y +AI++ P +I ++N Y
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI---TFYNNKAAVYF 53
Query: 219 VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264
++K + + E+A+++ R A M Q
Sbjct: 54 EEKKFAECVQFCEKAVEVG-RETRADYKLIAKAMSRAGNAFQKQND 98
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-10
Identities = 15/146 (10%), Positives = 39/146 (26%), Gaps = 25/146 (17%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ +G+ A A+ E+ + + +++ + + I
Sbjct: 48 EYEKGEYETAISTLNDAV--------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTI 99
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ Q+S + H R E E + N + A+
Sbjct: 100 EYYQKS---------LTEHRTADILTKLRNAEKELKKAEAEAYV--------NPEKAEEA 142
Query: 253 YHLATVLYLQGKENDSEALFLESIRI 278
+ + ++ + E I+
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKR 168
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 16/108 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G++YF + A K + + +R P A +N A +F +A
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMI--------KRAPEDARGYSNRAAALAKLMSFPEAIADCN 197
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+AI+ P +R A+ + ++ A + A
Sbjct: 198 KAIEK-----DPNFVR---AYIRKATAQIAVKEYASALETLDAARTKD 237
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 27/175 (15%), Positives = 43/175 (24%), Gaps = 30/175 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ K + +P A + Y K + A Y
Sbjct: 112 ADILTKLRNAEKELKKAEAEA--------YVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
E IK PED R + N +A +A++ ++
Sbjct: 164 EMIKR-----APEDAR---GYSNRAAALAKLMSFPEAIADCNKAIEKDP--------NFV 207
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304
AT + + + E G S R + Q Y KA
Sbjct: 208 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS------AREIDQLYYKA 256
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 16/149 (10%), Positives = 36/149 (24%), Gaps = 25/149 (16%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ + G + E + + A++ + +K
Sbjct: 79 SKSFARIGNAYHKLGDLKKTI--------EYYQKSLTE-HRTADILTKLRNAEKELKKAE 129
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ PE G+ Y + +A Y +K + A
Sbjct: 130 AEAYV-----NPEKAE---EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--------EDA 173
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRI 278
+ A L ++ A ++I
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAIEK 202
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 6e-06
Identities = 17/150 (11%), Positives = 42/150 (28%), Gaps = 21/150 (14%)
Query: 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR 221
+A + + FD+A Y +A ++ ++ +N +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI---------TYLNNRAAAEYEKG 52
Query: 222 KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI--- 278
+ E A + A++ + ++ G ++I
Sbjct: 53 EYETAISTLNDAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104
Query: 279 -LEENGEGDSMTCIRRLRYLAQTYVKANRL 307
L E+ D +T +R + +
Sbjct: 105 SLTEHRTADILTKLRNAEKELKKAEAEAYV 134
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-10
Identities = 30/229 (13%), Positives = 71/229 (31%), Gaps = 15/229 (6%)
Query: 139 LAEAEKLFLSALQEAKEGFGERDPH---VASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
L AEK + + K G A C A +YR++K + A +L+A
Sbjct: 8 LKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ 67
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
+++ ++ G + + + +A E A++I A+ + L
Sbjct: 68 KKAGNEDE--AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG--ANFKFEL 123
Query: 256 ATVLYLQGKEND-SEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314
+L + + + + + + + A + +A +
Sbjct: 124 GEILENDLHDYAKAIDCYELAGEWYAQ--DQSVALSNKCFIKCADLKALDGQYIEASDIY 181
Query: 315 RKILHIMESSKG--WNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
K++ ++ W+ D + L + + A +
Sbjct: 182 SKLIKSSMGNRLSQWSLKDYFLKK---GLCQLAATDAVAAARTLQEGQS 227
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 7e-09
Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 16/177 (9%)
Query: 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAE 185
+ Y L+ +L A FL A + ++ G D + + ++ A
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAA-DYQKKAGNED-EAGNTYVEAYKCFKSGGNSVNAV 97
Query: 186 PLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK-LEDACTYYERALKIKGRVLGHG 244
AI+I R LG+ A YE A +
Sbjct: 98 DSLENAIQIFTHRGQFR--RGANFKFELGEILENDLHDYAKAIDCYELAGEWYA--QDQS 153
Query: 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301
A + L G+ ++E+ I + + S R ++ + Y
Sbjct: 154 VALSNKCFIKCADLKALDGQ-------YIEASDIYSKLIK--SSMGNRLSQWSLKDY 201
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 2e-10
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
D++ +G++ EAE F D + LA +Y++K+ F +A LY
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYA 94
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
A + G D + GQ L + A +E ++
Sbjct: 95 VAFAL-----GKNDYT---PVFHTGQCQLRLKAPLKAKECFELVIQHS 134
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-07
Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 26/144 (18%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
+ + A + K ++AE + ++ L Y ++
Sbjct: 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVD---YIMGLAAIYQIK 83
Query: 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280
+ + A Y A + + ++H ++ F I+
Sbjct: 84 EQFQQAADLYAVAFAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Query: 281 ENGEGDSMTCIRRLRYLAQTYVKA 304
+ +L+ AQ+Y+ A
Sbjct: 136 DE----------KLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 13/153 (8%), Positives = 49/153 (32%), Gaps = 25/153 (16%)
Query: 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFG--PEDIRIGVAFHNLGQFYLVQRKLEDAC 227
N+ E + A A + + L++ + + ++ + + ++E+A
Sbjct: 4 NITENESISTAVIDA----INSGATLKDINAIPDDMMD---DIYSYAYDFYNKGRIEEAE 56
Query: 228 TYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287
++ + D + LA + ++ + + L+ + + + +
Sbjct: 57 VFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP-- 106
Query: 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320
+ + Q ++ A+ ++
Sbjct: 107 ------VFHTGQCQLRLKAPLKAKECFELVIQH 133
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 37/240 (15%), Positives = 77/240 (32%), Gaps = 41/240 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G+ G+LA+A F +A+ + DP A A ++ A P
Sbjct: 33 GKKLLAAGQLADALSQFHAAV--------DGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK-------GRVLG 242
+ I++ + A G L Q KL++A +++ LK
Sbjct: 85 KVIQL-----KMDFTA---ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Query: 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV 302
D + A + G + A + + + + E +R LR A+ ++
Sbjct: 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE------LRELR--AECFI 188
Query: 303 KANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
K A + + + ++++ + ++ G + CL+
Sbjct: 189 KEGEPRKAISDLKAASKLKNDNTEAFYK---------ISTLYYQLGDHELSLSEVRECLK 239
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 35/249 (14%), Positives = 67/249 (26%), Gaps = 42/249 (16%)
Query: 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAE 185
+ F G A L E A AE + + KA
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKIL--------EVCVWDAELRELRAECFIKEGEPRKAI 197
Query: 186 PLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245
A K+ ++ AF+ + Y E + + LK+ +
Sbjct: 198 SDLKAASKL-----KNDNTE---AFYKISTLYYQLGDHELSLSEVRECLKL--------D 241
Query: 246 IDYADTMYHLATVLYLQGKENDSEALF-----LESIRILEENGEGD---SMTCIRRLRYL 297
D+ H V L +E L ++ E + + + +R +
Sbjct: 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI 301
Query: 298 AQTYVKANRLTDAETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356
+ K + +A V ++L + ++ A EA + +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK---------DRAEAYLIEEMYDEAIQDY 352
Query: 357 ERCLEARKK 365
E E +
Sbjct: 353 ETAQEHNEN 361
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 43/236 (18%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+ G E L+ ++ + + L + A + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE------------KHLELGKKLLAAGQLADALSQFHAAV 53
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
P++ +A++ +L K + A + +++K D+
Sbjct: 54 DG-----DPDNY---IAYYRRATVFLAMGKSKAALPDLTKVIQLKM--------DFTAAR 97
Query: 253 YHLATVLYLQGKENDSEALFLESIRI-------LEENGEGDSMTCIRRLRYLAQTYVKAN 305
+L QGK +++E F + ++ E + ++RLR A +
Sbjct: 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157
Query: 306 RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
T A KIL + + E A G +A + +
Sbjct: 158 DYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-10
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 16/108 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G LAEA F + Q ++P A +L + A
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQ--------KEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
A + P+DI L + + A L +
Sbjct: 76 HARML-----DPKDIA---VHAALAVSHTNEHNANAALASLRAWLLSQ 115
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 16/109 (14%)
Query: 212 NLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL 271
G L L +A +E + + + L K+ +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIA 73
Query: 272 FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320
+ + ++ LA ++ + A R L
Sbjct: 74 LNHARMLDPKDIAV--------HAALAVSHTNEHNANAALASLRAWLLS 114
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 14/233 (6%), Positives = 47/233 (20%), Gaps = 42/233 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + + A P A + + + + P+
Sbjct: 181 GGGKQALETVQRLLPVLCQAH--------GLTPQQVVAIASNGGGKQALETVQRLLPVLC 232
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A + P+ + VA + G ++ +A +
Sbjct: 233 QAHGL-----TPQQV---VAIASNGGGKQALETVQRLLPVLCQAHGLTP--------QQV 276
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+ + + ++ + + + +
Sbjct: 277 VAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA--------IASNGGGKQALETVQR 328
Query: 310 AETVQRKILHIM-ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
V + + + S Q+ ++ + +
Sbjct: 329 LLPVLCQAHGLTPQQVVAIAS---------HDGGKQALETVQRLLPVLCQAHG 372
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 17/244 (6%), Positives = 51/244 (20%), Gaps = 44/244 (18%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ + A P A + + + + P+
Sbjct: 283 SGGKQALETVQRLLPVLCQAH--------GLTPQQVVAIASNGGGKQALETVQRLLPVLC 334
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A + P+ + VA + ++ +A + +
Sbjct: 335 QAHGL-----TPQQV---VAIASHDGGKQALETVQRLLPVLCQAHGL--------TPEQV 378
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+ + ++ + E + +
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA--------IASHDGGKQALETVQR 430
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369
V + + + V+A + S++ + L +
Sbjct: 431 LLPVLCQAHGL--------TPQQVVAIASNGGGRPALESIVAQLSRPDPALA----ALTN 478
Query: 370 DHIQ 373
DH+
Sbjct: 479 DHLV 482
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 18/226 (7%), Positives = 51/226 (22%), Gaps = 35/226 (15%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
EA + +AL A P A + + + + P+ +A +
Sbjct: 46 GVTAVEAVHAWRNALTGAP---LNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL- 101
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
P+ + VA + ++ +A + + +
Sbjct: 102 ----TPQQV---VAIASHDGGKQALETVQRLLPVLCQAHGL--------TPEQVVAIASH 146
Query: 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315
+ ++ + E + + V
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVA--------IASNGGGKQALETVQRLLPVLC 198
Query: 316 KILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
+ + + V+A Q+ ++ + +
Sbjct: 199 QAHGL--------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-09
Identities = 20/177 (11%), Positives = 44/177 (24%), Gaps = 5/177 (2%)
Query: 108 KIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASA 167
+ + L + G
Sbjct: 100 NELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQNLYI 157
Query: 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDAC 227
N +A +Y K L+ + +K L+ E+ + V +N + + + E++
Sbjct: 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV-RYNHAKALYLDSRYEESL 216
Query: 228 TYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
+A++I R+ + Y L E + + E
Sbjct: 217 YQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 3e-09
Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK-AEPLYLEAIK 193
+Q ++ + + L A A + V + AE L +A+K
Sbjct: 80 VQEEMEKTLQQMEEVLGS--------AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131
Query: 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253
+ PE + A++ LG+ Y + + A T + AL ++
Sbjct: 132 L-----EPELVE---AWNQLGEVYWKKGDVTSAHTCFSGALTHC---------KNKVSLQ 174
Query: 254 HLATVLYLQGKENDSEAL--FLESIRILEE 281
+L+ VL ++ E ++S+R +
Sbjct: 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 30/192 (15%), Positives = 68/192 (35%), Gaps = 32/192 (16%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL--YLE 190
Y+ +G + A F AL + + NL+ + R + E ++
Sbjct: 147 YWKKGDVTSAHTCFSGAL--------THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Query: 191 AIKILQESFGPEDIRIGVAFHNLGQFYLV--------QRKLEDACTYYERALKIKGRVLG 242
+++ + + D+ G +++ LG YL + + A + Y +A K+ +
Sbjct: 198 SVRQAKLAVQ-MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK--- 253
Query: 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE-----GDSMTCIRRLRYL 297
D + AT+ + ++ F ++ + E + + RL L
Sbjct: 254 --ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311
Query: 298 AQTY--VKANRL 307
++ K +L
Sbjct: 312 LESKGKTKPKKL 323
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 7e-06
Identities = 15/151 (9%), Positives = 38/151 (25%), Gaps = 29/151 (19%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY--------RVKKAF 181
+ ++ + A+Q D + L Y + K
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237
Query: 182 DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241
+A Y +A K+ +++ D N + + +A + +A +
Sbjct: 238 QQALSAYAQAEKVDRKASSNPD-----LHLNRATLHKYEESYGEALEGFSQAAALDP--- 289
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEALF 272
+ + +L +
Sbjct: 290 -----AWPEPQQREQQLLEFLSRLTSLLESK 315
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 3e-09
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 17/128 (13%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y + + EAEK F ++ RD H+A A LY + +D A
Sbjct: 44 GCMYTILKNMTEAEKAFTRSI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95
Query: 190 EAIKILQESFGPEDIRIGV--------AFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241
EA+ L+ + + +G+ +N+ Y + + + A A +K
Sbjct: 96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK-SEP 154
Query: 242 GHGNIDYA 249
H ID A
Sbjct: 155 RHSKIDKA 162
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 27/157 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + A F + + C N+ +Y + K +AE +
Sbjct: 13 GVLAADKKDWKGALDAFSAV-----------QDPHSRICFNIGCMYTILKNMTEAEKAFT 61
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK-------IKGRVLG 242
+I D + VA+ G Y K + A + AL I ++LG
Sbjct: 62 RSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113
Query: 243 -HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+ + +Y++A + + + +E + +
Sbjct: 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 19/118 (16%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
A + N L KK + A + R N+G Y + + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--------DPHSR---ICFNIGCMYTILKNMT 54
Query: 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282
+A + R++ + A + + Y K + + E++ L N
Sbjct: 55 EAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 28/132 (21%)
Query: 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194
+ G A+A + A+ G + +A L +R + KAE + +K
Sbjct: 2 VLGLEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56
Query: 195 LQESFGPEDIRI----GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250
P + + +NLG+ YE+ +++ +++ + D
Sbjct: 57 -----FPNHQALRVFYAMVLYNLGR--------------YEQGVELLLKIIAETSDDETI 97
Query: 251 TMYHLATVLYLQ 262
Y A + Y
Sbjct: 98 QSYKQAILFYAD 109
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240
+A P Y +AI G + + + LG + + A +K
Sbjct: 6 EAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-- 58
Query: 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
++ A VLY G+ L L+ I ++
Sbjct: 59 ------NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-08
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G D + + A K + A E DP + N A +Y K ++K L
Sbjct: 11 GNDAYKKKDFDTALKHYDKAK--------ELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
+AI+ + + +I A+ +G Y + K +DA +Y ++L
Sbjct: 63 KAIE-VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 15/143 (10%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
A L KK FD A Y +A ++ P ++ N Y +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM---TYITNQAAVYFEKGDYN 55
Query: 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
E+A+++ GR A + + + K D+ + +S L E+
Sbjct: 56 KCRELCEKAIEV-GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS---LAEHRT 111
Query: 285 GDSMTCIRRLRYLAQTYVKANRL 307
D + ++ + + + RL
Sbjct: 112 PDVL---KKCQQAEKILKEQERL 131
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 49.3 bits (119), Expect = 4e-08
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
A A NL Y + +D+A Y +A+++ P + A++NLG Y Q +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA---EAWYNLGNAYYKQGDYD 60
Query: 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263
+A YY++AL++ + A+ +L QG
Sbjct: 61 EAIEYYQKALELDP--------NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
A++NLG Y Q ++A YY++AL++ + A+ Y+L Y QG +++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAWYNLGNAYYKQGDYDEA 62
Query: 269 EALFLESIRI 278
+ +++ +
Sbjct: 63 IEYYQKALEL 72
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 8e-08
Identities = 50/328 (15%), Positives = 109/328 (33%), Gaps = 61/328 (18%)
Query: 82 PVLAEDISIESTSQNDTEGE--NAFGLRKIEDGSVVSNIHTSKWRVFT------DSGRDY 133
V + +++ D + + +I+ + + + R+F +
Sbjct: 23 SVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 134 FLQGKLAEAEKLFLSALQ-EAKEGFGERDPHVASACNNLAELYRVKKAFDKA----EPLY 188
F++ L K +S ++ E ++ ++ + LY + F K Y
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--QRD--RLYNDNQVFAKYNVSRLQPY 137
Query: 189 LEAIKILQESFGPEDIRIGVAFHNLGQF---YLVQRKLEDACTYYERALKIKGRV----L 241
L+ + L E P V + ++ D C Y+ K+ ++ L
Sbjct: 138 LKLRQALLE-LRPAK---NVLIDGVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWLNL 189
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301
+ N + L +LY S + +I++ + + LR L ++
Sbjct: 190 KNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-------AELRRLLKSK 241
Query: 302 VKANRLT------DAETVQR-----KILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350
N L +A+ KIL ++ D + AA ++L +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 351 ---EAQELFERCLEARKKLMPQDHIQVC 375
E + L + L+ R + +P+ +V
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPR---EVL 323
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 75/457 (16%), Positives = 125/457 (27%), Gaps = 177/457 (38%)
Query: 36 VSCKMKFSHQYGSAAGGYAW----RTNQNDSRLWILLFAPASLIYGITPNPVLAEDIS-- 89
V CKM F W N ++ L +L L+Y I PN D S
Sbjct: 176 VQCKMDF---------KIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSN 222
Query: 90 ----IESTSQ---------------------NDTEGENAFGLR-KI----EDGSV---VS 116
I S + + NAF L KI V +S
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL----- 171
T+ + D E + L L L + P N
Sbjct: 283 AATTT--HISLDHHSMTLTP---DEVKSLLLKYLDCRPQDL----PREVLTTNPRRLSII 333
Query: 172 AELYR--------------------VKKAFDKAEP-----LYLE-AIKILQESFGPEDIR 205
AE R ++ + + EP ++ ++ F P
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV------F-PPSAH 386
Query: 206 I--GV------------------AFHNLGQFYLVQRKL-EDACTYYERALKIKGRVLG-- 242
I + H LV+++ E + L++K ++
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 243 --HGNI-----------------DYADT------MYHLATVLYLQGKENDSEALFLESIR 277
H +I Y D +HL + + + + +FL R
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFL-DFR 501
Query: 278 ILEE---------NGEGDSMTCIRRLR-YLAQTYVKAN------RLTDAETVQRKILHIM 321
LE+ N G + +++L+ Y + Y+ N + KI +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358
SK D + +AL + EA + +R
Sbjct: 560 ICSK---YTDLL----RIALMAEDEAIFEEAHKQVQR 589
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
DP LA+ + +A L+ E ++ P+ + +++LG+ Y
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDYVG---TYYHLGKLYERL 54
Query: 221 RKLEDACTYYERALKIK 237
+ +DA Y + +++
Sbjct: 55 DRTDDAIDTYAQGIEVA 71
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-07
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
+ L Q +L A +E ++ + DY T YHL + + +D+
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDA 60
Query: 269 EALFLESIRILEENGE 284
+ + I + E G
Sbjct: 61 IDTYAQGIEVAREEGT 76
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 4e-04
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+++ + A LF + E DP +L +LY D A Y
Sbjct: 14 AQEHLKHDNASRALALFEELV--------ETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
+ I++ +E + L L LE
Sbjct: 66 QGIEVAREEGTQK------DLSELQDAKLKAEGLE 94
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-07
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 14/106 (13%)
Query: 150 LQEAKEGFG---ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206
+Q E + L + Y + FD A P A+ D
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTY 52
Query: 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
VA+ LG+ Q A +E L G+ +
Sbjct: 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS---RGDQQVVKEL 95
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 190 EAIKILQE--SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247
+ L+ + G ++ + LG+ Y + + A + AL
Sbjct: 3 AITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------T 51
Query: 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
Y+ L L QG + + + + G+
Sbjct: 52 YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 5e-07
Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 22/150 (14%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
+L A K + D + L + A ++ E
Sbjct: 140 LLKLDRLDLARKELKKMQDQD------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ + + ++ Q + E A + AL + + +T+
Sbjct: 194 DKCSPTL--------LLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETL 237
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEEN 282
+L + GK + +L ++ +
Sbjct: 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-07
Identities = 21/168 (12%), Positives = 42/168 (25%), Gaps = 30/168 (17%)
Query: 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196
G L E +LA ++ A ++ +
Sbjct: 1 GPLGSGGGTIAMLN--------EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-- 50
Query: 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256
D F LG + + A Y + +I +H A
Sbjct: 51 ------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--------DIXEPRFPFHAA 96
Query: 257 TVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304
L G+ ++E+ + ++ E L + ++A
Sbjct: 97 ECLLQXGELAEAESGLFLAQELIANXPE------FXELSTRVSSMLEA 138
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 3e-06
Identities = 10/149 (6%), Positives = 31/149 (20%), Gaps = 24/149 (16%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ + A P A + + + + P+
Sbjct: 267 IGGKQALETVQRLLPVLCQAH--------GLTPDQVVAIASHGGGKQALETVQRLLPVLC 318
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A + P+ + VA + ++ +A + D
Sbjct: 319 QAHGL-----TPDQV---VAIASHDGGKQALETVQRLLPVLCQAHGLTP--------DQV 362
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRI 278
+ + ++ +
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGL 391
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 7e-05
Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 19/143 (13%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
EA +AL A P A + + + + P+ +A +
Sbjct: 166 GVTAMEAVHASRNALTGAPLNL---TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL- 221
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
P + VA + ++ +A + D +
Sbjct: 222 ----TPAQV---VAIASHDGGKQALETMQRLLPVLCQAHGL--------PPDQVVAIASN 266
Query: 256 ATVLYLQGKENDSEALFLESIRI 278
+ ++ +
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGL 289
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 8e-06
Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 1/149 (0%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
+G E KL L++ + F + + +V + +E+ +A+++A +
Sbjct: 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY 381
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
+ + + ++G+A G +E +A I G + D
Sbjct: 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441
Query: 256 ATVLYLQGKENDSEALFLESIRILEENGE 284
+E ++ +R N +
Sbjct: 442 MQTEMELRMFRQNEFMY-HKMREAALNNQ 469
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 14/108 (12%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + G E+ LF A+ + DP + + + +++A Y
Sbjct: 13 GVLQYDAGNYTESIDLFEKAI--------QLDPEESKYWLMKGKALYNLERYEEAVDCYN 64
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
I ++++ + + + E E K++
Sbjct: 65 YVINVIEDEYNKD------VWAAKADALRYIEGKEVEAEIAEARAKLE 106
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 14/118 (11%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
L + ++ L+ +AI++ PE+ + + G+
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEESK---YWLMKGKALYNL 53
Query: 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+ E+A Y + + + D A L + + ++
Sbjct: 54 ERYEEAVDCYNYVINVI------EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 2e-05
Identities = 10/100 (10%), Positives = 35/100 (35%)
Query: 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196
+E ++ + ++ F + + ++ + + ++ A + IK
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371
Query: 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
+ + + + + LG+ Y+ ++A+ I
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 9e-05
Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 184 AEPLYLEAIKILQES--FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241
++ ++ LQ+ P++ + LG++YL Q ++ Y +AL+++G
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSE---QWALLGEYYLWQNDYSNSLLAYRQALQLRG--- 75
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSE---ALFLESIRILEENGEGDSMTCIRRLRYLA 298
+ A+ LATVLY Q ++ + A+ +++ + L LA
Sbjct: 76 -----ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA--------LMLLA 122
Query: 299 QTYVKANRLTDAETVQRKIL 318
A + +K++
Sbjct: 123 SDAFMQANYAQAIELWQKVM 142
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 16/107 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + A + A+ E +P A N A Y + A
Sbjct: 19 GNEQMKVENFEAAVHFYGKAI--------ELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
AI I P + A+ +G K +A YY++AL++
Sbjct: 71 RAICI-----DPAYSK---AYGRMGLALSSLNKHVEAVAYYKKALEL 109
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 1e-04
Identities = 14/117 (11%), Positives = 32/117 (27%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
K + + + + E + + + + + ++A ++
Sbjct: 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY 359
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+ F GV +G+ L Q A A I G + D +
Sbjct: 360 RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
+++ A VK D++ I L+ S+ + + LG+ Y ++
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMSW--------LNYVLLGKVYEMK 323
Query: 221 RKLEDACTYYERALKIK 237
+A Y A ++
Sbjct: 324 GMNREAADAYLTAFNLR 340
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 3e-04
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACT 228
+ EL + A E ++ A++ +G Y + A
Sbjct: 5 KTIKELINQGD-IENALQALEEFLQTEPVGKD-------EAYYLMGNAYRKLGDWQKALN 56
Query: 229 YYERALKIK 237
Y+ A+++
Sbjct: 57 NYQSAIELN 65
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 42/146 (28%)
Query: 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYR----VKKAFDKAEPLYLEAIKI 194
+A + F A C L LY K KA Y +A
Sbjct: 130 FKKAVEYFTKA---CDLND-------GDGCTILGSLYDAGRGTPKDLKKALASYDKACD- 178
Query: 195 LQESFGPEDIRIGVAFHNLGQFYL----VQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250
+ N G Y + ++A Y +A + L +
Sbjct: 179 -LKD--------SPGCFNAGNMYHHGEGATKNFKEALARYSKACE-----LEN-----GG 219
Query: 251 TMYHLATVLYLQGK---ENDSEALFL 273
++L + G+ N+ +A+
Sbjct: 220 GCFNLG-AMQYNGEGVTRNEKQAIEN 244
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 42/146 (28%)
Query: 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYR----VKKAFDKAEPLYLEAIKI 194
+A + + A + A C +L +Y V + F KA + +A
Sbjct: 94 TNKALQYYSKA---CDLKY-------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD- 142
Query: 195 LQESFGPEDIRIGVAFHNLGQFYL----VQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250
G LG Y + L+ A Y++A ++ +
Sbjct: 143 -LND--------GDGCTILGSLYDAGRGTPKDLKKALASYDKA----------CDLKDSP 183
Query: 251 TMYHLATVLYLQG---KENDSEALFL 273
++ +Y G +N EAL
Sbjct: 184 GCFNAG-NMYHHGEGATKNFKEALAR 208
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187
+ D GK +A +LFLS L+ G + +A L E Y + F AE
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNG-----VYTPNALYWLGESYYATRNFQLAEAQ 61
Query: 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235
+ + + P + LG + K +A ++
Sbjct: 62 FRDLVSRY-----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 4e-04
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL 223
+L ++ R + +AE Y A +++ + G ++ L +
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN--------GQPYNQLAILASSKGDH 202
Query: 224 EDACTYYERALKIK 237
YY R++ +K
Sbjct: 203 LTTIFYYCRSIAVK 216
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 42/146 (28%)
Query: 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYR----VKKAFDKAEPLYLEAIKI 194
AE+ K F A A++G S ++ + Y V + + A Y +A +
Sbjct: 131 KAESVKWFRLA---AEQGR-------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE- 179
Query: 195 LQESFGPEDIRIGVAFHNLGQFYL----VQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250
Q + + + LG Y V+R + +Y ++ G
Sbjct: 180 -QGN--------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-----SGD-----EL 220
Query: 251 TMYHLATVLYLQG---KENDSEALFL 273
HLA +Y G ++ +++ L
Sbjct: 221 GQLHLA-DMYYFGIGVTQDYTQSRVL 245
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 24/140 (17%), Positives = 40/140 (28%), Gaps = 37/140 (26%)
Query: 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199
E + A+ G A LA+ + + KAE +A Q
Sbjct: 3 TEPGSQYQQQ---AEAGD-------RRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGD- 49
Query: 200 GPEDIRIGVAFHNLGQFYL---VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256
G A L Q + Q A E+A++ G+ LA
Sbjct: 50 -------GDALALLAQLKIRNPQQADYPQARQLAEKAVE-------AGS---KSGEIVLA 92
Query: 257 TVLYLQG---KENDSEALFL 273
+ + + + A+ L
Sbjct: 93 -RVLVNRQAGATDVAHAITL 111
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.97 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.95 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.95 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.95 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.94 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.94 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.92 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.91 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.91 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.9 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.89 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.88 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.88 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.87 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.87 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.84 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.84 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.84 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.84 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.84 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.83 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.83 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.81 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.81 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.8 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.78 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.78 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.77 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.77 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.76 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.74 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.74 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.72 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.69 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.67 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.64 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.58 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.54 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.49 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.46 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.46 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.45 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.45 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.43 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.41 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.41 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.38 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.36 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.35 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.3 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.29 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.24 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.23 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.19 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.17 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.16 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.11 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.02 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.99 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.97 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.97 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.97 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.93 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.88 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.85 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.64 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.62 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.49 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.48 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.47 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.47 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.46 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.26 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.16 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.16 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.13 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.03 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.01 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.93 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.84 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.79 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.59 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.13 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.88 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.87 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.81 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 96.15 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.9 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.86 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.85 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.32 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.27 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.11 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.93 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.79 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.68 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.45 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.15 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 93.77 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 93.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.1 | |
| 3ubw_A | 261 | 14-3-3E, 14-3-3 protein epsilon; adapter protein, | 93.05 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 92.79 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.59 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 92.45 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.9 | |
| 2npm_A | 260 | 14-3-3 domain containing protein; cell regulator p | 90.71 | |
| 3uzd_A | 248 | 14-3-3 protein gamma; structural genomics, SGC, st | 90.44 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.37 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.3 | |
| 2o8p_A | 227 | 14-3-3 domain containing protein; signaling protei | 89.2 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 88.64 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.2 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.27 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.16 | |
| 3re2_A | 472 | Predicted protein; menin, multiple endocrine neopl | 86.09 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.95 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.76 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 83.36 | |
| 3efz_A | 268 | 14-3-3 protein; 14-3-3, cell regulation, structura | 82.11 | |
| 3u84_A | 550 | Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik | 82.01 | |
| 3iqu_A | 236 | 14-3-3 protein sigma; signal transuction, nucleus, | 81.54 | |
| 2vkj_A | 106 | TM1634; membrane protein, TPR motif joint center f | 80.6 | |
| 4gq4_A | 489 | Menin; tumor suppressor, nucleus, transcription-tr | 80.48 |
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-27 Score=197.58 Aligned_cols=251 Identities=24% Similarity=0.332 Sum_probs=228.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
..++++|..+.++..+|.++...|++++|+.++++++++.....+++.+....++..+|.++...|++++|+.++++++.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45668889999999999999999999999999999999988886667889999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
..++..+++.+....++..+|.++...|++++|+.++++++++..+..+.+++....++..+|.++...|++++|+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99888777788889999999999999999999999999999999888777788899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc----------------------------
Q 017109 274 ESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK---------------------------- 325 (377)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 325 (377)
+++++.....+++.+....++..+|.++...|++++|+.+++++++......
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 9999998887677888899999999999999999999999999998754421
Q ss_pred -------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 326 -------------GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 326 -------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
...++....++..+|.+|...|++++|..++++++++.+
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 114577889999999999999999999999999999764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-26 Score=188.40 Aligned_cols=229 Identities=24% Similarity=0.304 Sum_probs=211.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|++++|+.+++++++..++..+.+++....++..+|.++...|++++|+.++++++++.++..+++++....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 56799999999999999999998877889999999999999999999999999999999999988778889999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
|.++...|++++|+.++++++.+.++..+++++....++.++|.++...|++++|+.++++++++.....+++.+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999998888888999999999999999999999999999999999888877788889999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc-----------------------------------------CCCChhH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSK-----------------------------------------GWNSLDT 332 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------------------------------~~~~~~~ 332 (377)
+..+|.++...|++++|+.++++++++..... +..++..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999999999854422 1256778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
..++..+|.++...|++++|..++++++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-25 Score=192.13 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=225.9
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC-CHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER-DPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l 171 (377)
...|++++|...+.+++......+ +.+..+.++..+|.++...|++++|+.++++++++.++. ++ .+..+.++.++
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVK-DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH--EAYNIRLLQCHSLF 190 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--STTHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 457999999999999998766553 667788999999999999999999999999999998876 33 56788999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.+|...|++++|+.++++++++.++. ++.+..+.++.++|.+|..+|++++|+.++++++++.+..... +....+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~ 266 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--PSLPQA 266 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc--hhHHHH
Confidence 999999999999999999999998876 3567788899999999999999999999999999998765432 667889
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+.++|.++...|++++|+.++++++++.+..+ .+.....+..+|.++...|++ ..+++++...++. ...+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~ 337 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---DVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYAD 337 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHH
Confidence 99999999999999999999999999988875 333334467799999999995 4455555555554 33466
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
...++..+|.+|...|++++|..++++++++.+++.+.++.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~e~l 378 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSL 378 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSCCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhccchh
Confidence 68889999999999999999999999999999998876653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-24 Score=189.54 Aligned_cols=264 Identities=17% Similarity=0.155 Sum_probs=232.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++......+ +.+..+.++..+|.++...|++++|+.++++++++.... .+.+....++..+
T Consensus 57 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 133 (406)
T 3sf4_A 57 YFYLHDYAKALEYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNL 133 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHH
Confidence 3456888999998888887665543 567788999999999999999999999999999998877 4556678899999
Q ss_pred HHHHHHhcC--------------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 172 AELYRVKKA--------------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 172 a~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
|.++...|+ +++|+.++++++.+..+. .+.+....++..+|.++...|++++|+.+++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999 999999999999998876 3567778899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++++..... +.+....++.++|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+
T Consensus 212 ~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 212 QRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9999987643 2356677999999999999999999999999999988865 56667888999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.++++++++...... .+....++..+|.++...|++++|..++++++++.++.
T Consensus 288 ~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 288 DYHLKHLAIAQELND--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999877633 35568899999999999999999999999999998775
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-24 Score=189.39 Aligned_cols=262 Identities=21% Similarity=0.219 Sum_probs=229.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... .+....+.++..+|.++...|++++|+.++++++++.+.. .+.+....++..+
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 132 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGT---EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNL 132 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcc---cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHH
Confidence 3457899999999999887632 2344456899999999999999999999999999998887 5668889999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK-----------------LEDACTYYERAL 234 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al 234 (377)
|.++...|++++|+.++++++++..... +.+....++..+|.++...|+ +++|+.++++++
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988763 467778899999999999999 999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
++...... .+....++..+|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+.++
T Consensus 211 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 211 KLMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 98877633 367788999999999999999999999999999988865 55667778999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++++.+..... +......++..+|.++...|++++|..++++++++.++.
T Consensus 287 ~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 287 KRTLALAVELG--EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 99999987652 234557889999999999999999999999999988775
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=191.14 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=232.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++......+ +.+....++..+|.++...|++++|+.++++++++.... .+.+....++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 172 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNL 172 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHH
Confidence 3457999999999999887765553 567889999999999999999999999999999998887 5567889999999
Q ss_pred HHHHHHhcC-----------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017109 172 AELYRVKKA-----------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 172 a~~~~~~g~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 234 (377)
|.++...|+ +++|+.++++++++..... +.+....++..+|.++...|++++|+.++++++
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999 9999999999999888762 457778899999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
++...... ......++..+|.++...|++++|+.++++++.+.+... +......++..+|.++...|++++|+.++
T Consensus 251 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 251 RIAREFGD--RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG--EREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHTC--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCC--cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99876532 255677899999999999999999999999999988864 55667788999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++++.+..... +.+....++..+|.++...|++++|..++++++++.+++
T Consensus 327 ~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 327 NRHLAIAQELG--DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHCC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 99999987763 235567899999999999999999999999999986553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-24 Score=187.16 Aligned_cols=262 Identities=20% Similarity=0.213 Sum_probs=230.3
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... .+....+.++..+|.++...|++++|+.++++++.+.... .+.+....++..+
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 93 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNL 93 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHH
Confidence 4457899999999999887632 2444467899999999999999999999999999998877 5567889999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC--------------------HHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK--------------------LEDACTYYE 231 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 231 (377)
|.++...|++++|+.++++++++.++.. +.+....++..+|.++...|+ +++|+.+++
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999988763 456678899999999999999 999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++.+..... +.+....++.++|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+
T Consensus 172 ~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 172 ENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999987653 3377788999999999999999999999999999988865 56677788999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.++++++.+..... +.+....++..+|.++...|++++|..++++++++.++.
T Consensus 248 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 248 EYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 99999999987653 334557899999999999999999999999999988775
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-24 Score=184.83 Aligned_cols=263 Identities=17% Similarity=0.159 Sum_probs=226.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+++......+ +.+..+.++..+|.++...|++++|+..+++++++.... ++.+....++..+|
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 54 FYLHDYAKALEYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLG 130 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 346888888888888877655443 567788999999999999999999999999999998876 45566788999999
Q ss_pred HHHHHhcC--------------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 173 ELYRVKKA--------------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 173 ~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
.++...|+ +++|+.++++++.+.+... +.+....++..+|.++...|++++|+.++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999 9999999999999888763 4667788999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 233 ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
++++...... .+....++..+|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|..
T Consensus 209 a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 209 RLLIAKEFGD--KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999876532 256677999999999999999999999999999988864 566778889999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++++++.+...... .+....++..+|.++...|++++|..++++++++.+++
T Consensus 285 ~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 285 YHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999876633 34557789999999999999999999999999987653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-23 Score=179.91 Aligned_cols=263 Identities=20% Similarity=0.207 Sum_probs=229.8
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... .+......++..+|.++...|++++|+.+++++++..... ++.+....++..+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 89 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNL 89 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHH
Confidence 3457999999999999887632 2444557899999999999999999999999999998887 5667789999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC--------------------HHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK--------------------LEDACTYYE 231 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 231 (377)
|.++...|++++|+.++++++++.++. ++.+....++..+|.++...|+ +++|+.+++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999998875 3456677899999999999999 999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++.+...... .+....++..+|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+
T Consensus 168 ~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 168 ENLSLVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998876633 366788999999999999999999999999999988865 55667778999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
.++++++.+..... +.+....++..+|.++...|++++|..++++++++.+...
T Consensus 244 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 244 EYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 99999999987653 3455678899999999999999999999999999887753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-24 Score=177.97 Aligned_cols=229 Identities=28% Similarity=0.308 Sum_probs=206.4
Q ss_pred cccCCChhhhhhhhhhhhcccccc-ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVV-SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
....|++++|...+.+++...... ++++|..+.++..+|.++...|++++|+.+++++++..++..+++++....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345688888999999988876543 4466888999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+|.++...|++++|+.++++++++.++..+++++....++.++|.++...|++++|+.++++++++.....+++++....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999998888888899999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-----------------------------------------CCCHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGE-----------------------------------------GDSMT 289 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------------------~~~~~ 289 (377)
++..+|.++...|++++|+.++++++++.+.... .+++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999998655321 24577
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...++..+|.+|..+|++++|+.++++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999864
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-24 Score=186.37 Aligned_cols=243 Identities=18% Similarity=0.099 Sum_probs=207.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....++..|..+...|++++|+.++++++++.... ++.+..+.++..+|.+|...|++++|+.++++++++.++..
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~- 175 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP- 175 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-
Confidence 344567889999999999999999999999987766 55678899999999999999999999999999999988752
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
...+..+.++.++|.++...|++++|+.++++++++.++... .+....++.++|.++...|++++|+.++++++++.+
T Consensus 176 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 124567889999999999999999999999999999876532 256788999999999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC---------------------------------
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW--------------------------------- 327 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------- 327 (377)
... .+....++..+|.++..+|++++|+.++++++++......+
T Consensus 254 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 254 EKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred hhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 764 33447889999999999999999999999999875432211
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDH 371 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 371 (377)
..+.....+..+|.+|...|++++|..++++++++.+++...++
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 374 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccch
Confidence 22345567788999999999999999999999999988776544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=175.70 Aligned_cols=198 Identities=20% Similarity=0.122 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++++ .
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~- 69 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----T- 69 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-
Confidence 4467899999999999999999999999976 7888999999999999999999999999999998 3
Q ss_pred CchhHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQ-----------RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
|....++.++|.++... |++++|+..+++++++. |....++.++|.++...|++++|+.
T Consensus 70 --P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 70 --PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp --TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHHHH
Confidence 33467899999999999 99999999999999984 6677899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 350 (377)
.+++++++. ....++.++|.++...|++++|+..|+++++.. |....++..+|.++...|+++
T Consensus 140 ~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 140 SLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--------PKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHH
Confidence 999999983 224567899999999999999999999999873 455788999999999999999
Q ss_pred HHHHHHHHHH
Q 017109 351 EAQELFERCL 360 (377)
Q Consensus 351 ~A~~~~~~al 360 (377)
+|+..++++-
T Consensus 203 ~A~~~~~~~~ 212 (217)
T 2pl2_A 203 EAARAAALEH 212 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=183.15 Aligned_cols=242 Identities=16% Similarity=0.050 Sum_probs=191.8
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..|++++++ .|....++..+
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 139 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMAL 139 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Confidence 455799999999999888643 345688999999999999999999999999988 67778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh--
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDI--RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-- 247 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 247 (377)
|.++...|++++|+.++++++++.......... .....+..+|.++...|++++|+.++++++... |.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~ 211 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--------GDMI 211 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--------CSSC
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--------cCcc
Confidence 999999999999999999999974432111000 123455667999999999999999999999984 33
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
...++..+|.++...|++++|+.++++++++. +....++..+|.++...|++++|+.+|++++++.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 277 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ------ 277 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Confidence 56789999999999999999999999999872 2234578999999999999999999999999873
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
|....++..+|.++...|++++|..++++++++.++..++.++
T Consensus 278 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 320 (365)
T 4eqf_A 278 --PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV 320 (365)
T ss_dssp --TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCccc
Confidence 4447899999999999999999999999999999987776554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-22 Score=174.49 Aligned_cols=225 Identities=16% Similarity=0.077 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..++.+|..+...|++++|+.++++++++.+.. ++.+..+.++..+|.+|...|++++|+.++++++++.++. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 180 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN 180 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence 355669999999999999999999999987766 5566789999999999999999999999999999998876 2236
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+..+.++.++|.++...|++++|+.++++++++.++.. +.+..+.++.++|.++...|++++|+.++++++++.+...
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 77789999999999999999999999999999987653 3467788999999999999999999999999999988865
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS---LMEAQELFER 358 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 358 (377)
+.+....++.++|.++..+|++++|..++++++++...... +.....+..++.++...|+ +++|+.++++
T Consensus 259 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 259 --ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD---VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp --CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33566888999999999999999999999999999877633 3334446789999999999 5555554443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-22 Score=166.95 Aligned_cols=209 Identities=22% Similarity=0.288 Sum_probs=195.0
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 157 FGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 157 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.++++|....++..+|.++...|++++|+.++++++++..+..+++.+....++..+|.++...|++++|+.++++++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999988877778888999999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 237 KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
..+..+.+++....++..+|.++...|++++|+.++++++++.....+.+.+....++..+|.++...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 98887777788999999999999999999999999999999988875567888899999999999999999999999999
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 317 ILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 317 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+++..+...+.+++....++..+|.++...|++++|..++++++++.++
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999988888888888999999999999999999999999999998665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-22 Score=162.79 Aligned_cols=219 Identities=16% Similarity=0.094 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|.++...|++++|+.+++++++. . ....++..+|.++...|++++|+.+++++++..... .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 45688999999999999999999999999987 2 446789999999999999999999999999987654 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------------HhcCCCChhHHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG-------------------RVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
++.+....++..+|.++...|++++|+.++++++.+.. +.. ...|....++..+|.++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHH
Confidence 34555578999999999999999999999999998421 000 0247778899999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 341 (377)
.|++++|+.+++++++..+ ....++..+|.++...|++++|+.+++++++.. |....++..+|.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~ 215 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP--------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKAT 215 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------HHHHHHHHHHHH
Confidence 9999999999999998722 224668899999999999999999999999873 344788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 342 TLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 342 ~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++...|++++|..++++++++.++.
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhh
Confidence 9999999999999999999998654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-22 Score=173.28 Aligned_cols=248 Identities=13% Similarity=0.049 Sum_probs=205.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l 138 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMAL 138 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Confidence 456799999999999888643 345678999999999999999999999999987 56678899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-----------------------------------------Cchh--HHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGP-----------------------------------------EDIR--IGV 208 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------------------~~~~--~~~ 208 (377)
|.++...|++++|+..+++++......... ..|. ...
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 999999999999999999887642211000 0111 357
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM 288 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (377)
++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++++. +
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~ 282 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------P 282 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Confidence 88999999999999999999999999884 5557789999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC---CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 289 TCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW---NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
....++..+|.++...|++++|+.++++++++.....++ .++....++..+|.++...|++++|..+++++++..++
T Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 234668899999999999999999999999987655222 12334788999999999999999999999999999998
Q ss_pred hCCCC
Q 017109 366 LMPQD 370 (377)
Q Consensus 366 ~~~~~ 370 (377)
.++.+
T Consensus 363 ~~~~~ 367 (368)
T 1fch_A 363 MFGLP 367 (368)
T ss_dssp HTTCC
T ss_pred hcCCC
Confidence 87753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=175.00 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=132.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|+++++......++.. .|....++..+|.++...|++++|+..|+++++. .|....++..+|.+
T Consensus 46 ~~~~~~a~~~~~~a~~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQ-------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAA 110 (388)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHH
Confidence 45556665555555432 2344566777777777777777777777777765 45555566666666
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCc-------------------------------hhHHHHHHHHHHHHHHccCH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPED-------------------------------IRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~ 223 (377)
+...|++++|+..++++++. .|+. |....++..+|.++...|++
T Consensus 111 ~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQY-----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654 1211 11123444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 224 EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 224 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
++|+..+++++... |....++..+|.++...|++++|+..+++++.+ .|....++..+|.++..
T Consensus 186 ~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 186 WLAIHHFEKAVTLD--------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHH
Confidence 44444444444431 333445555555555555555555555555554 11223456677777777
Q ss_pred hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 304 ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.|++++|+..++++++. .|....++..+|.++...|++++|...+++++++
T Consensus 250 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp TTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777664 2333566777788888888888888888777764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=174.95 Aligned_cols=201 Identities=23% Similarity=0.270 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..++++++. .
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~- 199 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----D- 199 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----C-
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-
Confidence 3445566666677777777777777777665 5666778888888888888888888888888886 3
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|....++..+|.++...|++++|+..+++++... |....++.++|.++...|++++|+..++++++.
T Consensus 200 --p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 266 (388)
T 1w3b_A 200 --PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--- 266 (388)
T ss_dssp --TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 3345789999999999999999999999999884 566788999999999999999999999999985
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. |....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|...++++++
T Consensus 267 --~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 267 --Q---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp --C---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred --C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2233568899999999999999999999999873 34478899999999999999999999999987
Q ss_pred H
Q 017109 362 A 362 (377)
Q Consensus 362 ~ 362 (377)
+
T Consensus 334 ~ 334 (388)
T 1w3b_A 334 V 334 (388)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=172.30 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=196.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
...|++++|...+.+.+... |....++..+|.++...| ++++|+.+++++++. .|....++..+
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l 131 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLY-------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAY 131 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHH
Confidence 45688888888888877543 334578999999999999 999999999999976 56677889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..++++++. .++. ..++..+|.++...|++++|+.+++++++.. |....+
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~ 195 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQL-----MKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSIA--------PEDPFV 195 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-----TTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh-----cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCChHH
Confidence 99999999999999999999998 2332 3567789999999999999999999998874 555788
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDS-MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
+..+|.++...|++++|+.+++++++..+..+.... +....++..+|.++...|++++|+.+++++++.. |
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~ 267 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------P 267 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------c
Confidence 999999999999999999999999998766543221 3345678899999999999999999999999873 3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
....++..+|.++...|++++|..++++++++
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 34678999999999999999999999999873
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=168.38 Aligned_cols=237 Identities=11% Similarity=0.091 Sum_probs=195.8
Q ss_pred hcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.....|++++|...+.+++...+ ....++..+|.++...|++++|+..++++++. +++......++..
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKY-------NSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNATKAKSADFEY 79 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC-------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTTTCCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCchhHHHHHHHH
Confidence 34567999999999999886543 22357889999999999999999999999873 1222334788999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+|.++...|++++|+.+++++++. .|+. ..++..+|.++...|++++|+.+++++++.. |....
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~ 143 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDR-----DTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--------TTDPK 143 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--------CCCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--------CCcHH
Confidence 999999999999999999999997 3333 4789999999999999999999999998772 56678
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC---hhHHHHHHHHHHHHHHhccCC
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR---LTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~ 327 (377)
++..+|......+++++|+..+++++++.+ ....++..+|.++...|+ +++|+..++++++........
T Consensus 144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 144 VFYELGQAYYYNKEYVKADSSFVKVLELKP--------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 899999555556799999999999998732 224567889999999999 999999999999998665433
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.......++..+|.+|...|++++|..++++++++.
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 223346889999999999999999999999999864
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=174.18 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=190.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH--hHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP--HVASACN 169 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~ 169 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++........... .....+.
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQ-------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------
T ss_pred HHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 345799999999999888653 3446789999999999999999999999999973221000000 0133445
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.+|.++...|++++|+.+++++++. .|+.. ...++..+|.++...|++++|+.+++++++.. |...
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~ 247 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQ-----NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDY 247 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHH-----SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHh-----CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCH
Confidence 5699999999999999999999998 33310 25688999999999999999999999999884 5567
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.++..+|.++...|++++|+.++++++++. |....++..+|.++...|++++|+.+|++++++.....++.+
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcc
Confidence 789999999999999999999999999872 223567889999999999999999999999999877655433
Q ss_pred hh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 330 LD----TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 330 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
+. ...++..++.++...|+.+.+....++.++...+.++.+
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~ 364 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLD 364 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTTCC
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcCCC
Confidence 22 357889999999999999999999988877776666543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=170.08 Aligned_cols=239 Identities=16% Similarity=0.136 Sum_probs=187.1
Q ss_pred CCChhhhhh-hhhhhhccccccccchh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 95 QNDTEGENA-FGLRKIEDGSVVSNIHT-SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 95 ~~~~~~a~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
.|++++|.. .+.+++.... +.| .....++.+|..+...|++++|+..++++++. .|....++..+|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 105 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEE----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLG 105 (368)
T ss_dssp --------CHHHHCCCCCCS----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCC----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 366677666 5555554322 222 23566889999999999999999999999986 667788999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC---------
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH--------- 243 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------- 243 (377)
.++...|++++|+.+++++++. .|+ ...++..+|.++...|++++|+..+++++.........
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLEL-----KPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHHCcCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 9999999999999999999997 333 35789999999999999999999999887643211000
Q ss_pred --------------------------------CChh--HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 244 --------------------------------GNID--YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 244 --------------------------------~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
..|. ...++..+|.++...|++++|+.++++++++. +.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~ 249 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PN 249 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cC
Confidence 0122 46788999999999999999999999999872 22
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
...++..+|.++...|++++|+.++++++++. |....++..+|.++...|++++|..++++++++.+...++
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 24568899999999999999999999999873 4447889999999999999999999999999998876443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-21 Score=160.05 Aligned_cols=247 Identities=12% Similarity=0.054 Sum_probs=196.2
Q ss_pred cCCChhhhhhhhhhhhcccc----ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGS----VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
+.|++++|..+..++..... ...++.......+...|.+|...|++++|+..|.+++++..+. .+....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 45667777766665554322 1145667777888889999999999999999999999998876 44556788999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
++|.+|..+|++++|+.++++++++..... +....+.++.++|.+|.. |++++|+.+|++++++...... .....
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~--~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER--LRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC--hhHHH
Confidence 999999999999999999999999987652 344567899999999999 9999999999999999865321 24457
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.++.++|.++..+|++++|+.++++++++.+... ..+.....+..+|.++..+|++++|+.+|++++ +..... .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~---~ 229 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS---G 229 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST---T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC---C
Confidence 8899999999999999999999999999988865 344556678899999999999999999999999 533221 1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHH
Q 017109 330 LDTVIAAEGLALTLQSTGSLMEAQE 354 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~A~~ 354 (377)
......+..++..+ ..|+.+.+..
T Consensus 230 ~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 230 SEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 22345566667666 5677665555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=168.68 Aligned_cols=235 Identities=12% Similarity=0.004 Sum_probs=198.1
Q ss_pred hhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
......|++++|...+.+.+...+ ....++..++.++...|++++|+..++++++. .|....++.
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 94 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWF 94 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHH
Confidence 345567999999999888875432 33456777889999999999999999999987 667778999
Q ss_pred HHHHHHHHhc-CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 170 NLAELYRVKK-AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 170 ~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
.+|.++...| ++++|+.+++++++. .++ ...++..+|.++...|++++|+..++++++.. |..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~ 158 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTL-----EKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGC 158 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTT-----CTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------ccc
Confidence 9999999999 999999999999986 233 34679999999999999999999999999885 444
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
..++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.+++++++......+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIA--------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence 5667889999999999999999999998862 22346688999999999999999999999999876654432
Q ss_pred C-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 329 S-LDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 329 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
. +....++..+|.++...|++++|..++++++++.
T Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 2 3346789999999999999999999999999863
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=163.10 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=181.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+..+...|.+|...|++++|+..|++++++..+. .+.+..+.++.++|.+|..+|++++|+.++++++++....
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 44456677788999999999999999999999998776 4445678999999999999999999999999999998775
Q ss_pred cCCCchhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
. +....+.++.++|.+|... |++++|+.+|++++++...... ......++.++|.++..+|++++|+.+|+++++
T Consensus 111 g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 111 G--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--VALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp T--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 3445678999999999996 9999999999999999864321 133467899999999999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH--HcCCHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ--STGSLMEAQEL 355 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~ 355 (377)
+.+.... .......++.++|.++..+|++++|+.+|++++++...... ......+..++..+. ..+++++|+..
T Consensus 187 ~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 187 SSMGNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp TTSSCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHhcCCc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7543321 01234456889999999999999999999999887544321 111345556666665 45778888888
Q ss_pred HHHHHH
Q 017109 356 FERCLE 361 (377)
Q Consensus 356 ~~~al~ 361 (377)
|++++.
T Consensus 263 ~~~~~~ 268 (292)
T 1qqe_A 263 FDNFMR 268 (292)
T ss_dssp HTTSSC
T ss_pred hccCCc
Confidence 766544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=163.99 Aligned_cols=262 Identities=13% Similarity=0.011 Sum_probs=197.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHH--HHHHHcCCHHHHH---------HHHHHHHHHHHhhCCCC
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSG--RDYFLQGKLAEAE---------KLFLSALQEAKEGFGER 160 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~---------~~~~~al~~~~~~~~~~ 160 (377)
.....++++|..+..+..........+.. . ..++.+- +.....+.+..+. ..+++.-...... +
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~-~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---~ 96 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQD-L-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---T 96 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHH-H-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---H
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHH-H-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---c
Confidence 34577888888777765554444433222 2 2333322 2222223333222 3333322111110 1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+......++..|..+...|++++|+.++++++++.... ++.+..+.++..+|.+|...|++++|+.++++++++..+.
T Consensus 97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 12234467789999999999999999999999987765 3567788999999999999999999999999999998754
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.+ ..+..+.++.++|.++...|++++|+.++++++++.+..+ +......++.++|.+|..+|++++|+.++++++++
T Consensus 175 ~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 175 PL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32 1245788999999999999999999999999999998875 55677888999999999999999999999999998
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.+... ++....++..+|.++...|++++|..++++++++.++.
T Consensus 252 ~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 252 SREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 87653 34558899999999999999999999999999986554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=160.86 Aligned_cols=249 Identities=11% Similarity=0.006 Sum_probs=201.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l 95 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAAL 95 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHH
Confidence 345688888888888877543 335678889999999999999999999999987 56667889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcC-----------------------------------------CCchhHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFG-----------------------------------------PEDIRIGVAF 210 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------------------~~~~~~~~~~ 210 (377)
|.++...|++++|+..++++++....... ...+....++
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 99999999999999999888764211000 0012235678
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHH
Q 017109 211 HNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTC 290 (377)
Q Consensus 211 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 290 (377)
..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+++++++.. +..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~ 239 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--------PGY 239 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCC
Confidence 899999999999999999999999874 5556789999999999999999999999999862 123
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 291 IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD----TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
..++..+|.++...|++++|+.++++++.......+..... ...++..++.++...|++++|...++++++..++.
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 45678999999999999999999999999875432222111 57889999999999999999999999999999988
Q ss_pred CCCCC
Q 017109 367 MPQDH 371 (377)
Q Consensus 367 ~~~~~ 371 (377)
++.+.
T Consensus 320 ~~~~~ 324 (327)
T 3cv0_A 320 FGLQS 324 (327)
T ss_dssp TTSSC
T ss_pred hhHHH
Confidence 77554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-21 Score=149.13 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...+|+.+|.++...|++++|+..|++++++ +|....++..+|.++...|++++|+..+.+++.. .+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DT 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cc
Confidence 4578999999999999999999999999998 7888899999999999999999999999999887 33
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
+. ..++..+|.++...++++.|...+.+++... |....++..+|.++...|++++|+..|++++++
T Consensus 71 ~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 71 TS---AEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 33 5788999999999999999999999999884 666788999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 22335678999999999999999999999999873
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-21 Score=175.29 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=181.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|....++..+|.+|...|++++|+..|+++++. .|....++..++.+|...|++++|+..++++++.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 436 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL----- 436 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 445678889999999999999999999999987 5667788999999999999999999999999876
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.+++ ..++..+|.+|...|++++|+.+|+++++.. +....++..+|.++...|++++|+.+++++++..
T Consensus 437 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 437 FQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp TTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Cccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 2333 4688899999999999999999999998873 4456789999999999999999999999999987
Q ss_pred HHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 280 EENGEGDSMT-CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 280 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
++.+ ..+. ...++..+|.++...|++++|++.++++++.. |....++..++.+|...|++++|..++++
T Consensus 506 ~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 506 KKTQ--SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHSC--CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccc--cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7653 2233 36678999999999999999999999999873 33468899999999999999999999999
Q ss_pred HHHHH
Q 017109 359 CLEAR 363 (377)
Q Consensus 359 al~~~ 363 (377)
++++.
T Consensus 576 ~l~~~ 580 (597)
T 2xpi_A 576 SLAIS 580 (597)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99863
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-21 Score=155.29 Aligned_cols=205 Identities=16% Similarity=0.083 Sum_probs=178.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+.++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~ 101 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----D 101 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----C
Confidence 34789999999999999999999999999987 5666889999999999999999999999999987 3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++ ...++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++..
T Consensus 102 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 171 (252)
T 2ho1_A 102 SR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN- 171 (252)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred cC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 33 357899999999999999999999999887 12246678899999999999999999999999999862
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
+. ...++..+|.++...|++++|+.+++++++.. +....++..++.++...|++++|..++++++
T Consensus 172 ----~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 172 ----RN---QPSVALEMADLLYKEREYVPARQYYDLFAQGG--------GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp ----SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 12 24567899999999999999999999988642 2336778899999999999999999999998
Q ss_pred HHH
Q 017109 361 EAR 363 (377)
Q Consensus 361 ~~~ 363 (377)
+..
T Consensus 237 ~~~ 239 (252)
T 2ho1_A 237 RLY 239 (252)
T ss_dssp HHC
T ss_pred HHC
Confidence 853
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=159.13 Aligned_cols=203 Identities=16% Similarity=0.179 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~ 87 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL-----D 87 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Confidence 45678899999999999999999999999975 5667889999999999999999999999999987 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+ ....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.+++++++..+
T Consensus 88 ~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 88 S---SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred C---cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 2 335789999999999999999999999999874 44467889999999999999999999999998722
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|..++++++
T Consensus 157 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 157 --------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp --------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 223467899999999999999999999998873 3336789999999999999999999999999
Q ss_pred HHH
Q 017109 361 EAR 363 (377)
Q Consensus 361 ~~~ 363 (377)
++.
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 853
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-20 Score=148.97 Aligned_cols=208 Identities=20% Similarity=0.132 Sum_probs=178.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 71 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--- 71 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Confidence 34567789999999999999999999999999987 5666789999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.++. ..++..+|.++... |++++|+.+++++++ .+..+....++..+|.++...|++++|+.++++++
T Consensus 72 --~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 72 --KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp --CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333 56889999999999 999999999999987 12346667889999999999999999999999998
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+..+ + ...++..+|.++...|++++|..+++++++... . .....+..++.++...|+.++|..++
T Consensus 141 ~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 141 AAQP-----Q---FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE----V---LQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHST-----T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----S---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCC-----C---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8622 2 245678999999999999999999999998752 0 22566788899999999999999999
Q ss_pred HHHHHH
Q 017109 357 ERCLEA 362 (377)
Q Consensus 357 ~~al~~ 362 (377)
+.+...
T Consensus 206 ~~~~~~ 211 (225)
T 2vq2_A 206 AQLQAN 211 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=159.47 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=185.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHhh-C--CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEG-F--GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFH 211 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 211 (377)
..|++++|.++++++.+..... + +++.......+...|.+|...|++++|+.++.+++++..+.. +....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 4578899999999998876531 2 234445567788889999999999999999999999988763 4556788999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 017109 212 NLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCI 291 (377)
Q Consensus 212 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (377)
++|.+|..+|++++|+.+|++++++...... ......++.++|.+|.. |++++|+.+|++++++.+..+ +.....
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGT--PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHH
Confidence 9999999999999999999999999865432 24567889999999999 999999999999999988764 445567
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++.++|.++..+|++++|+.+|++++.+...... .+....++..++.++..+|++++|..++++++ +.+.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 88999999999999999999999999999876532 23446688899999999999999999999998 5443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-21 Score=147.91 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+.++.++|.+|..+|++++|+..|++++++ .|+ ...++..+|.++...|++++|+..+.+++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------ 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 3678999999999999999999999999998 333 46789999999999999999999999998874
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
+....++..+|.++...++++.|...+.+++++. +....++..+|.++..+|++++|++.|++++++.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-- 137 (184)
T 3vtx_A 70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-- 137 (184)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--
Confidence 5567788999999999999999999999999872 2234567889999999999999999999999873
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|....++..+|.+|..+|++++|+.+|++++++.++
T Consensus 138 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 138 ------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred ------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 455789999999999999999999999999997664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-21 Score=165.11 Aligned_cols=202 Identities=9% Similarity=-0.056 Sum_probs=177.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA-FDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 196 (377)
-.|....++..+|.++...|++++|+..+++++++ +|....++.++|.++...|+ +++|+..+++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 45677899999999999999999999999999998 88889999999999999997 99999999999998
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+|....+++++|.++..+|++++|+..|++++++. |....++.++|.++...|++++|+.++++++
T Consensus 162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34446899999999999999999999999999984 7778899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHH-----HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC--C
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDA-----ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG--S 348 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 348 (377)
++ .+....++.++|.++.. .|..++| +.+|++++.+. |....++..++.++...| +
T Consensus 228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--------P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTCGGG
T ss_pred Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHccCccc
Confidence 97 23345678999999999 5665888 58999999873 445788999999999888 6
Q ss_pred HHHHHHHHHHH
Q 017109 349 LMEAQELFERC 359 (377)
Q Consensus 349 ~~~A~~~~~~a 359 (377)
+++|+..++++
T Consensus 292 ~~~a~~~~~~~ 302 (382)
T 2h6f_A 292 YPNLLNQLLDL 302 (382)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 78888777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=178.95 Aligned_cols=175 Identities=22% Similarity=0.272 Sum_probs=158.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|..+.+++++|.++...|++++|+..|++++++ +|....++.++|.++..+|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 46778899999999999999999999999999998 7888999999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+|....++.++|.++..+|++++|++.|++++++. |....++.++|.++..+|++++|+..|+++++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34446899999999999999999999999999984 67788999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
+ .|....++.++|.++..+|++++|.+.+++++++....
T Consensus 140 l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 L--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred h--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 7 22335678999999999999999999999999987553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-19 Score=155.01 Aligned_cols=261 Identities=10% Similarity=0.001 Sum_probs=198.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+++++.....+++.... ..+......++..+|.++...|++++|+..+++++.+.... ++......++..+|
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la 100 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQS 100 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHH
Confidence 346888888888888887553 22334466788999999999999999999999999998775 33345577889999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|+.+++++++..+...++.++....++.++|.++...|++++|..++++++.+..... ++....++
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~ 177 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQCL 177 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---GGGGHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---cHHHHHHH
Confidence 999999999999999999999988875554567788899999999999999999999999999875432 12356788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..+|.++...|++++|..++++++.+....+.+ ..........++.++...|++++|..++++++... .+ .....
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~-~~~~~ 252 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FA-NNHFL 252 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CT-TCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CC-cchhh
Confidence 999999999999999999999999886554311 11112222244566778888888888888776431 11 11112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
...+..++.++...|++++|...+++++...+.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 334567778888888888888888887777655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=177.95 Aligned_cols=175 Identities=22% Similarity=0.226 Sum_probs=158.2
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
..|..+.++.++|.++..+|++++|+.+|++++++ +|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-- 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-- 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 36888999999999999999999999999999998 33446899999999999999999999999999984
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
|....++.++|.++..+|++++|++.|++++++ .+....++.++|.+|..+|++++|++.|+++++
T Consensus 74 ------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 74 ------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777889999999999999999999999999997 233456789999999999999999999999999
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+. |....++.++|.++..+|++++|.+.+++++++.+..
T Consensus 140 l~--------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 LK--------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HC--------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hC--------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 83 4557899999999999999999999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-19 Score=154.86 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=188.3
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHh
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSK---------WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPH 163 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 163 (377)
...|++++|...+.+++...+..+ +.+.. ...+..+|.++...|++++|+..++++++. .|.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~ 152 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQ-EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVW 152 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHcCChHHHHHHHHHHHhcCCccc-ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC
Confidence 346888888888888876533100 11111 112234489999999999999999999987 566
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
...++..+|.++...|++++|+..++++++. .|+. ..++..+|.++...|++++|+..++++++.. +
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~ 219 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----Q 219 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----c
Confidence 7789999999999999999999999999986 3333 5789999999999999999999999999874 3
Q ss_pred CChhHHH---------HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 244 GNIDYAD---------TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 244 ~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
+++.... ....+|.++...|++++|+..++++++..+. +.......+..+|.++...|++++|+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----VAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----SHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3333222 2335589999999999999999999987321 23334456788999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+++++.. |....++..+|.++...|++++|..++++++++
T Consensus 296 ~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999872 444789999999999999999999999999984
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=152.36 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=150.4
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.. .|....++..+|.++...|++++|+..+++++++ +|....++..+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~l 79 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKE-------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVL 79 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHH
Confidence 44578999999999888854 3445688999999999999999999999999998 78888999999
Q ss_pred HHHHHHh-----------cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 172 AELYRVK-----------KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 172 a~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
|.++... |++++|+..+++++++ .|+ ...++.++|.++...|++++|+..|++++++.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 148 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE--- 148 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----Ccc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---
Confidence 9999999 9999999999999998 333 35789999999999999999999999999982
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
....++.++|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+..++++-
T Consensus 149 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 ------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---------------
T ss_pred ------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 33567899999999999999999999999987 22334568899999999999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=174.33 Aligned_cols=204 Identities=14% Similarity=0.082 Sum_probs=180.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKL-AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
..+..+.+++.+|.++...|++ ++|+..|+++++. +|....++..+|.+|...|++++|+.+|++++++
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-- 166 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-- 166 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 4456788999999999999999 9999999999998 6778899999999999999999999999999987
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQ---------RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ----- 262 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----- 262 (377)
.|+ ..++.++|.++... |++++|+..+++++++. |....++.++|.++...
T Consensus 167 ---~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 167 ---CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp ---CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHhhc
Confidence 333 48899999999999 99999999999999984 66678999999999999
Q ss_pred ---CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 017109 263 ---GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339 (377)
Q Consensus 263 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 339 (377)
|++++|+.+|++++++.+. .+....++.++|.+|...|++++|+..|++++++. |....++..+
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~a~~~l 298 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--------PAWPEPQQRE 298 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Confidence 9999999999999997221 11456778999999999999999999999999883 4447889999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~a 359 (377)
+.++...|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999876543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=165.18 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=186.8
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGK-LAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
...|++++|...+.+++.. +|....+++.+|.++...|+ +++|+..|++++++ +|....++.++
T Consensus 108 ~~~g~~~~Al~~~~~al~l-------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~ 172 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHR 172 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHh-------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHH
Confidence 3468889999999888854 34566899999999999997 99999999999998 78889999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..|++++++ +|....++.++|.++..+|++++|+.++++++++. |....+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--------P~~~~a 236 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--------VRNNSV 236 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHH
Confidence 99999999999999999999998 34446899999999999999999999999999984 777889
Q ss_pred HHHHHHHHHH-cCChhhH-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHh
Q 017109 252 MYHLATVLYL-QGKENDS-----EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN--RLTDAETVQRKILHIMES 323 (377)
Q Consensus 252 ~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~ 323 (377)
++++|.++.. .|..++| +.++++++++ .|....++.+++.++...| ++++|++.++++ +.
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--- 304 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--- 304 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---
Confidence 9999999999 5665888 5889999987 2233457889999999988 688998887664 21
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HH
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTG--------S-LMEAQELFERC-LE 361 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~ 361 (377)
.+....++..+|.+|..+| + +++|+.+|+++ ++
T Consensus 305 -----~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 305 -----SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp -----TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 2444788999999999885 2 58898888887 54
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-20 Score=163.37 Aligned_cols=234 Identities=15% Similarity=0.089 Sum_probs=189.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchh---hhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHT---SKW---------RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE 159 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 159 (377)
....|++++|...+.+++.... +.+ ... ..+..+|..+...|++++|+..++++++.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 172 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP----SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV------- 172 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHcCCHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 3457899999988888876443 333 111 12455688899999999999999999987
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.|....++..+|.+|...|++++|+.+++++++.. ++. ..++..+|.++...|++++|+..+++++...
T Consensus 173 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 241 (450)
T 2y4t_A 173 -CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-----NDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-- 241 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----CSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 56778899999999999999999999999999872 233 5789999999999999999999999999763
Q ss_pred hcCCCChhHHHHH---------HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH
Q 017109 240 VLGHGNIDYADTM---------YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA 310 (377)
Q Consensus 240 ~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (377)
++++.....+ ..+|.++...|++++|+.++++++++.+ .+.......+..+|.++...|++++|
T Consensus 242 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 242 ---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP----SIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC----SSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3233322222 3449999999999999999999998621 12233456788999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 311 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+.+++++++.. |....++..+|.++...|++++|..++++++++
T Consensus 315 ~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 315 IRVCSEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999872 444789999999999999999999999999984
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=170.78 Aligned_cols=232 Identities=15% Similarity=0.117 Sum_probs=197.6
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... . ..++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~-------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 316 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHP-------T-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHR 316 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCC-------C-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHH
Confidence 3447888899988888876432 2 578899999999999999999999999987 66778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..++++++. .++. ..++..+|.++...|++++|+.+++++++.. |....+
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~ 380 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSL-----NPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKF--------PTLPEV 380 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHH
Confidence 99999999999999999999997 3333 3688999999999999999999999999884 555678
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh----------CChhHHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA----------NRLTDAETVQRKILHIM 321 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~ 321 (377)
+..+|.++...|++++|+..++++++..+..... ......+..+|.++... |++++|+.+++++++..
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI--HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC--SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh--HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999998776422 22233456788999999 99999999999999873
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|....++..+|.++...|++++|..++++++++.+.
T Consensus 459 --------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 459 --------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred --------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 444688999999999999999999999999997543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-20 Score=152.28 Aligned_cols=209 Identities=18% Similarity=0.100 Sum_probs=176.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
+.....++.+|..++..|++++|+..|+++++.. ++++....+++.+|.++...|++++|+..++++++.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----- 81 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI----- 81 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----
Confidence 4456889999999999999999999999999762 344555899999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--------------HHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLV--------QRKLEDACTYYERALKIKGRVLGHGNIDYADTM--------------YHLAT 257 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~ 257 (377)
.|+++....+++.+|.++.. .|++++|+..|++++... ++++....+. ..+|.
T Consensus 82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778899999999999 999999999999999884 4444444444 88999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh----------CChhHHHHHHHHHHHHHHhccCC
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA----------NRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
++...|++++|+..|+++++.. ++++....++..+|.+|... |++++|+..|+++++.. +
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-----P 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----T
T ss_pred HHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----C
Confidence 9999999999999999999873 23445667789999999977 89999999999999874 4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
+++....+...++.++...++++++.
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 56667788888999988888776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-19 Score=155.01 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=188.8
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 77 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQR 77 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHH
Confidence 445799999999999888643 334578999999999999999999999999987 56667899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL------------GQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
|.++...|++++|+..++++++. .|.......++..+ |.++...|++++|+..++++++..
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 150 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-- 150 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence 99999999999999999999986 22000233444444 899999999999999999999874
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
|....++..+|.++...|++++|+..++++++. .+....++..+|.++...|++++|+..++++++
T Consensus 151 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 151 ------VWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555788999999999999999999999999875 222345688999999999999999999999997
Q ss_pred HHHhccCCCChhHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 320 IMESSKGWNSLDTVI---------AAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.. ++++.... ....+|.++...|++++|...++++++..
T Consensus 217 ~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 217 LD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 63 22332222 23355889999999999999999998853
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-20 Score=164.12 Aligned_cols=222 Identities=15% Similarity=0.035 Sum_probs=174.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE-RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
+++..+.+++.+|.++...|++++|+++|++|+++.+...+. .++....++.++|.+|..+|++++|+.++++++++.+
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 344457889999999999999999999999999998776432 3567788999999999999999999999999999998
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---HHHcCChhhHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQ--RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV---LYLQGKENDSEAL 271 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~ 271 (377)
...++.++..+.++.++|.++... +++++|+.+|++++++. |....++..++.+ +...++.++|++.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--------p~~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--------PKNPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 887666666678888888877665 57999999999999984 4445566666666 4456888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH----HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC
Q 017109 272 FLESIRILEENGEGDSMTCIRRLRYLAQT----YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG 347 (377)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 347 (377)
+++++++. ++.+ .++..+|.. +...|++++|..++++++... |....++..+|.+|...|
T Consensus 198 ~~~al~l~-----p~~~---~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 198 LRQAIRLN-----PDNQ---YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------PGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHHHC-----SSCH---HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcC-----Ccch---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHHHHcC
Confidence 99999872 2222 234445544 445678899999999998873 444788999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 017109 348 SLMEAQELFERCLEAR 363 (377)
Q Consensus 348 ~~~~A~~~~~~al~~~ 363 (377)
++++|+..+++++++.
T Consensus 262 ~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 262 EPDKAIELLKKALEYI 277 (472)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhC
Confidence 9999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=161.28 Aligned_cols=229 Identities=11% Similarity=0.088 Sum_probs=187.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+++.. .|....++..+|.++...|++++|+..++++++. .|....++..+|
T Consensus 37 ~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 101 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDFTAARLQRG 101 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHH
Confidence 3468888998888888754 2344688999999999999999999999999987 667788999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH------------HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA------------FHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.++...|++++|+.+++++++. .++.+....+ +..+|.++...|++++|+.++++++...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 173 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--- 173 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 9999999999999999999875 3333311122 4455888999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....++..+|.++...|++++|+..++++++..+ + ...++..+|.++...|++++|+..+++++..
T Consensus 174 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 174 -----VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-----D---NTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-----S---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55678899999999999999999999999998732 2 2456889999999999999999999999976
Q ss_pred HHhccCCCChhHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAA---------EGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. ++++.....+ ..+|.++...|++++|..++++++++
T Consensus 241 ~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 241 D-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp C-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3 2233222222 33499999999999999999999885
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-19 Score=153.99 Aligned_cols=262 Identities=15% Similarity=0.040 Sum_probs=205.4
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|.....+++......+ +......++..+|.++...|++++|+..++++++......+..++....++.++|
T Consensus 64 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 64 HCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 346888888888888887665544 3345577789999999999999999999999999988775544477888999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|..++++++.+..... ++....++..+|.++...|++++|..++++++.+......+ ........
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~ 218 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNAN 218 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHH
Confidence 999999999999999999999865541 22345788999999999999999999999999886432111 01111222
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++.++...|++++|..++++++.... .........+..+|.++...|++++|...+++++........ ....
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~ 292 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDL 292 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCC----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCC----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhH
Confidence 3455668899999999999999875321 111222234678999999999999999999999998776432 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..++..+|.++...|++++|...+++++.+.+.
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 568889999999999999999999999998775
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=151.90 Aligned_cols=188 Identities=11% Similarity=0.041 Sum_probs=154.5
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.+|...|++++|+.+|++++++..+.. +.+..+.++.++|.+|..+|++++|+.++++++++...... ....+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~~~~a~~ 119 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--FRRGANF 119 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHH
Confidence 5677889999999999999999987762 44566889999999999999999999999999999866432 2445778
Q ss_pred HHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 252 MYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 252 ~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
+.++|.+|... |++++|+.+|++++++.+..+ +......++.++|.++..+|++++|+.+|++++++....... ..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 196 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QW 196 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GG
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cH
Confidence 99999999996 999999999999999988754 334456778999999999999999999999999875332110 11
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
....++..+|.++..+|++++|+.++++++++.+..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 234578999999999999999999999998876654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-20 Score=167.60 Aligned_cols=232 Identities=17% Similarity=0.192 Sum_probs=192.0
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
|++++|...+.+.+...+.........+.++..+|.++...|++++|+..++++++. .|. ..++..+|.++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~ 286 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHH
Confidence 466777777777765544332233445778999999999999999999999999987 455 78899999999
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+.+++++++. .++ ...++..+|.++...|++++|+..+++++... |....++..+
T Consensus 287 ~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l 350 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDL-----NPE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQL 350 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhcc-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Confidence 9999999999999999987 333 35789999999999999999999999999874 4445789999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
|.++...|++++|+.+++++++..+ + ...++..+|.++...|++++|+.+++++++.......... ....
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~ 420 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFP-----T---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGP 420 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----T---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----C---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHH
Confidence 9999999999999999999998722 2 2346788999999999999999999999998766543322 2455
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQST----------GSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~----------g~~~~A~~~~~~al~~ 362 (377)
+..+|.++... |++++|..+++++++.
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 67888999999 9999999999999986
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-19 Score=150.03 Aligned_cols=214 Identities=15% Similarity=0.047 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~ 85 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-----D 85 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C
Confidence 34566889999999999999999999999987 5677888999999999999999999999999997 3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------------------------------------
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG-------------------------------------- 242 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------- 242 (377)
|+. ..++..+|.++...|++++|+..+++++........
T Consensus 86 ~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 86 PKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 333 578899999999999999999999988764211000
Q ss_pred ---CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 243 ---HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 243 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
...|....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.+++++++
T Consensus 163 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012345678899999999999999999999999862 22245688999999999999999999999998
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.. |....++..+|.++...|++++|..++++++.+.+..
T Consensus 235 ~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 235 IN--------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred cC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 73 3346789999999999999999999999999987663
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=149.77 Aligned_cols=228 Identities=14% Similarity=0.018 Sum_probs=184.2
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+++.... .++|....++..+|.++...|++++|+..++++++. .|....++..+|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~ 85 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRA---LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGI 85 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhccc---ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHH
Confidence 45889999999998887532 245678899999999999999999999999999987 5667889999999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
++...|++++|+.+++++++. .|+. ..++..+|.++...|++++|+.+++++++.. + .......
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~---~~~~~~~ 149 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLEL-----DPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----P---NDPFRSL 149 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhc-----Cccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----C---CChHHHH
Confidence 999999999999999999997 3333 4789999999999999999999999999874 2 2222333
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.++ +....|++++|+..+++++...+. +.. ...++.++...++.++|+..+++++...... .+...
T Consensus 150 ~~~-~~~~~~~~~~A~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 215 (275)
T 1xnf_A 150 WLY-LAEQKLDEKQAKEVLKQHFEKSDK----EQW-----GWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLS 215 (275)
T ss_dssp HHH-HHHHHHCHHHHHHHHHHHHHHSCC----CST-----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHhcCCc----chH-----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc----ccccc
Confidence 333 346679999999999998876321 111 2347777888899999999999887654332 13346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.++..+|.++...|++++|..++++++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88999999999999999999999999874
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=145.89 Aligned_cols=208 Identities=18% Similarity=0.206 Sum_probs=164.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.. .|....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 97 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEE-------NKEDAIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGA 97 (243)
T ss_dssp ---------CCTTHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHH
Confidence 34467788888888777753 2334678999999999999999999999999987 56678899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.+++++++.. +....+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~ 161 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRA-----GMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELN--------ENDTEA 161 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----TCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CccHHH
Confidence 99999999999999999999987 3333 4678999999999999999999999999874 455678
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.+++++++.. |.
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~ 225 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQDP--------GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--------PD 225 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--------cc
Confidence 99999999999999999999999988621 224568899999999999999999999999873 33
Q ss_pred HHHHHHHHHHHHHHc
Q 017109 332 TVIAAEGLALTLQST 346 (377)
Q Consensus 332 ~~~~~~~la~~~~~~ 346 (377)
...++..++.+....
T Consensus 226 ~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 226 HMLALHAKKLLGHHH 240 (243)
T ss_dssp CHHHHHHHTC-----
T ss_pred hHHHHHHHHHHHhhc
Confidence 355666665554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=153.72 Aligned_cols=206 Identities=16% Similarity=0.079 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
+.+...|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. +++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 45778999999999999999999999986 4555668999999999999999999999999983 2233
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
.....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+++++++.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 3346789999999999999999999999999974 555678999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS---LMEAQELFERCL 360 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 360 (377)
.+....++..+|......+++++|+.+++++++.. |....++..+|.++...|+ +++|...+++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 22334567889945555679999999999999874 3347888999999999999 999999999999
Q ss_pred HHHHhh
Q 017109 361 EARKKL 366 (377)
Q Consensus 361 ~~~~~~ 366 (377)
++....
T Consensus 207 ~~~~~~ 212 (272)
T 3u4t_A 207 EVCAPG 212 (272)
T ss_dssp HHHGGG
T ss_pred HHHhcc
Confidence 987543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-18 Score=142.46 Aligned_cols=223 Identities=9% Similarity=-0.008 Sum_probs=180.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... ....++..+|.++...|++++|+..++++++...... ++.+....++..+
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~l 85 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-ADYKVISKSFARI 85 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHH
Confidence 445789999999999888764 1246899999999999999999999999999865431 2334448999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHH-------------------HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKIL-------------------QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
|.++...|++++|+.++++++.+. ++.. ...+....++..+|.++...|++++|+.++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999999841 1110 03566778999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 233 ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
++... |....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|..
T Consensus 165 a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 165 MIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99874 5556889999999999999999999999999862 2234568899999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
++++++++..+... .|....+...++.+
T Consensus 229 ~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 229 TLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred HHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 99999998755432 23335555555543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-19 Score=163.85 Aligned_cols=226 Identities=11% Similarity=0.162 Sum_probs=192.2
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+.+.. +....++..+|..+...|++++|+..|+++++. .|....++..++
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~ 346 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHL 346 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHH
Confidence 3467888888888776643 345678999999999999999999999999976 455567788999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|...+++++.. .++ ...++..+|.+|...|++++|+.+|+++++.. |....++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~ 410 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDR-----HPE---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--------PQFGPAW 410 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-----CTT---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhh-----Ccc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHH
Confidence 9999999999999999999865 233 35788899999999999999999999999863 5567789
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++.++...|++++|+..++++++..+ ....++..+|.+|...|++++|+++|+++++.. |..
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~ 474 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLFQ--------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYD 474 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTT--------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC
Confidence 9999999999999999999999987522 223567889999999999999999999998763 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
..++..++.++...|++++|..++++++++.++.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 6789999999999999999999999999987763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-19 Score=142.63 Aligned_cols=183 Identities=13% Similarity=0.069 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
..++.+|.++...|++++|+..|+++++. .| ....++..+|.++...|++++|+.+++++++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 78999999999999999999999999988 33 44567788999999999999999999999986
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI----DYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.|....++..+|.++..+|++++|+..++++++.. ++++ ....++..+|.++...|++++|+..+++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 44457899999999999999999999999999884 2222 12367999999999999999999999999985
Q ss_pred HHHcCCCCCHH--HHHHHHHHHHHHHHhCCh---------------------------hHHHHHHHHHHHHHHhccCCCC
Q 017109 279 LEENGEGDSMT--CIRRLRYLAQTYVKANRL---------------------------TDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 279 ~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.|. ...++.++|.++...|+. ++|+.++++++++.
T Consensus 147 --------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~-------- 210 (228)
T 4i17_A 147 --------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS-------- 210 (228)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------
Confidence 345 577889999999999888 88899999888873
Q ss_pred hhHHHHHHHHHHHH
Q 017109 330 LDTVIAAEGLALTL 343 (377)
Q Consensus 330 ~~~~~~~~~la~~~ 343 (377)
|....+...++.+.
T Consensus 211 p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 211 PNRTEIKQMQDQVK 224 (228)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 33355555565554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=143.48 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=183.0
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFL----QGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 168 (377)
...|++++|...+.+++. +....+++.+|.++.. .+++++|+.+|+++++. . ...++
T Consensus 17 ~~~~~~~~A~~~~~~a~~---------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~----~~~a~ 77 (273)
T 1ouv_A 17 YKEKDFTQAKKYFEKACD---------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------N----YSNGC 77 (273)
T ss_dssp HHTTCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T----CHHHH
T ss_pred HhCCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------C----CHHHH
Confidence 345788999999988876 1234688999999999 99999999999999975 1 46788
Q ss_pred HHHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHh
Q 017109 169 NNLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 169 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 240 (377)
..+|.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+++++++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------CC---ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 999999999 99999999999999985 22 4789999999999 999999999999998752
Q ss_pred cCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAET 312 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 312 (377)
...++.++|.++.. .+++++|+.+++++++. .. ..++..+|.+|.. .+++++|+.
T Consensus 145 -------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 145 -------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred -------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 25678899999999 99999999999999875 22 3567899999999 999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQS----TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 363 (377)
+++++++. .+ ..++..+|.+|.. .+++++|..+++++++..
T Consensus 208 ~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 208 RYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999875 12 6788999999999 999999999999999863
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=167.08 Aligned_cols=230 Identities=17% Similarity=0.115 Sum_probs=195.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... . ..++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~-------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 310 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFP-------R-VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHR 310 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCc-------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHH
Confidence 3457889999888888876532 2 678999999999999999999999999875 55667789999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+.+++++++. .+.. ..++..+|.++...|++++|+..++++++.. |....+
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~ 374 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKEL-----DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEV 374 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHT-----CSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-----Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHH
Confidence 99999999999999999999986 3333 4688999999999999999999999999874 444578
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH---hCChhHHHHHHHHHHHHHHhccCCC
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK---ANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
+..+|.++...|++++|+.+++++++..+... .......++..+|.++.. .|++++|+.++++++...
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 445 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLD--GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD------- 445 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-------
Confidence 89999999999999999999999999876643 111123368899999999 999999999999999873
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
|....++..+|.++...|++++|..++++++++.
T Consensus 446 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 446 -PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3346889999999999999999999999999863
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-19 Score=156.55 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=147.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
....+..+..+|+|++|+.++++++++.++.+|+++|..+.++.+||.+|..+|+|++|+.++++++++.++..|+++|.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 33445567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++..+++||.+|..+|++++|+.++++|+++.+...|++||.+.....+++.++..++++++|...|.++.+.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-20 Score=165.32 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=195.9
Q ss_pred CCChhhhhhhhhhhhc-----c--ccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHH
Q 017109 95 QNDTEGENAFGLRKIE-----D--GSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASA 167 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 167 (377)
.|++++|...+.+++. . ........|....++..+|.++...|++++|+..++++++. .|. ..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~ 272 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNS 272 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHH
Confidence 7999999999998887 3 11111124778899999999999999999999999999987 455 889
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
+..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+..+++++... |.
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~ 336 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKL-----DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------PE 336 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTT-----CTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------SS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhc-----CcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------hh
Confidence 999999999999999999999999886 3333 4688999999999999999999999999873 44
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
...++..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.++++++.........
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 4568899999999999999999999999986322 22467889999999999999999999999986544221
Q ss_pred CChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQS---TGSLMEAQELFERCLEA 362 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 362 (377)
.....++..+|.++.. .|++++|..+++++++.
T Consensus 409 --~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 409 --YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp --SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 1114588999999999 99999999999999985
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-19 Score=147.03 Aligned_cols=227 Identities=11% Similarity=-0.034 Sum_probs=175.3
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|+++++...... ..+....++..++..+...|++++|++.+++.+.. ..+|....++..+
T Consensus 44 yi~~g~~~~al~~~~~----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~l 107 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMA 107 (291)
T ss_dssp HHHTTCHHHHHHHSCT----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHhcc----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHH
Confidence 3445777666654322 12235688889999999999999999999998763 2246677889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..+++ +++ ..++..+|.++..+|++++|+..++++++.. +++. ....
T Consensus 108 a~~~~~~g~~~~Al~~l~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l 168 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ----------GDS---LECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQL 168 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT----------CCS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHH
T ss_pred HHHHHHCCCHHHHHHHHhC----------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHH
Confidence 9999999999999999987 223 4688999999999999999999999998873 3222 1111
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
...+..++...|++++|+..|+++++.. ++ ...++.++|.++..+|++++|+..++++++.. |.
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~ 232 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADKC-----SP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--------SG 232 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Confidence 1122234445689999999999999861 22 34568899999999999999999999999873 45
Q ss_pred HHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHhhCCCCCCcc
Q 017109 332 TVIAAEGLALTLQSTGSLME-AQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
...++.++|.++...|+.++ +..+++++++ ..|+||.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~-----~~P~~~~~ 271 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD-----AHRSHPFI 271 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----HCTTCHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----hCCCChHH
Confidence 57889999999999999976 5789999988 45666643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-18 Score=134.65 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=156.3
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|........ .+.+....++..+|.++...|++++|+.++++++++.+.. ++.+....++.++|
T Consensus 3 ~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVG 73 (203)
T ss_dssp ----CHHHHHHHHHHHH-------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHH
Confidence 34688888877222111 1333567899999999999999999999999999998876 55678899999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|+.++++++++.+.. +.+......++.++|.++...|++++|+.++++++.+.+.... ......++
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~ 150 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACAF 150 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHHH
Confidence 99999999999999999999998865 3233467889999999999999999999999999998765432 24557778
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
.++|.++...|++++|..++++++++.+..+ +......+...++.+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence 9999999999999999999999999998876 444555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-18 Score=152.79 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=146.7
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
...+..+..+|+|++|+..+++++++.++..|++++.++.++.++|.+|..+|+|++|+.++++++++.++..|++||.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+..+++||.+|..+|++++|+.++++++++.+...++++|.+......++.++..++.+++|+..|.++.+.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-18 Score=155.05 Aligned_cols=239 Identities=12% Similarity=0.033 Sum_probs=182.6
Q ss_pred cccCCChhhhhhhhhhhhcccccc--ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVV--SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
....|++++|...+.++++..... ...++..+.++.++|.+|...|++++|+.++++++++.+...+..++..+.++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 445799999999999988764332 234677888999999999999999999999999999998887666677788888
Q ss_pred HHHHHHHHh--cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 170 NLAELYRVK--KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF---YLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 170 ~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
.+|.++... +++++|+.+|++++++ .|+++ .++..++.+ +...+++++|++.+++++++.
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~------- 205 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN------- 205 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-------
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-------
Confidence 888877665 4799999999999998 55555 455555555 445678899999999999883
Q ss_pred ChhHHHHHHHHHHHHH----HcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLY----LQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....++..+|..+. ..|++++|+.++++++.. .+....++..+|.+|...|++++|+..++++++.
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 444556666665554 457889999999999886 2233456789999999999999999999999987
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQST-------------------GSLMEAQELFERCLEA 362 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~ 362 (377)
. |....++..+|.+|... +.+++|...+++++++
T Consensus 277 ~--------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 277 I--------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp S--------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 3 45578888888887643 2345666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-18 Score=133.31 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=157.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
+..|++++|...++... .+.+....++..+|.++...|++++|+.++++++++.+... +.+....++.++
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 56799999998554442 23446789999999999999999999999999999988752 467778899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
|.++...|++++|+.++++++.+.+... .+......++.++|.++...|++++|+.++++++++.+..+ +......+
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 149 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACA 149 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHH
Confidence 9999999999999999999999987542 22236788999999999999999999999999999988765 45566777
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
+..+|.++...|++++|..++++++++.+....+ .....+...++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS--EAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHhcccch
Confidence 8999999999999999999999999998776432 2334555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-18 Score=140.59 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=157.1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+.....++.+|..+...|++++|+..|+++++. .|+++....+++.+|.++..+|++++|+..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence 4556789999999999999999999999999986 55666668899999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHH--------cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYL--------QGKENDSEALFLESIRILEENGEGDSMTCIRRL--------------RYLA 298 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la 298 (377)
++++....+++.+|.++.. .|++++|+..++++++..+. ++....+. ..+|
T Consensus 83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-----HELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-----CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-----chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999 99999999999999987433 22333333 7899
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHH
Q 017109 299 QTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST----------GSLMEAQELFERCLEAR 363 (377)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~ 363 (377)
.+|...|++++|+..|+++++.. ++++....++..+|.+|... |++++|+..++++++..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999999999999999874 33444678999999999977 99999999999999854
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=137.87 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV----KKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 196 (377)
....+++.+|..+...|++++|+.+|+++++. ....++..+|.++.. .+++++|+.+++++++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-- 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence 34578899999999999999999999999872 224688999999999 99999999999999986
Q ss_pred HhcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDS 268 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 268 (377)
++ ..++..+|.++.. .+++++|+.+++++++. ....++.++|.++.. .+++++|
T Consensus 72 -----~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 -----NY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp -----TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred -----CC---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCcccCHHHH
Confidence 22 4789999999999 99999999999999875 135789999999999 9999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ 344 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 344 (377)
+.+++++++. .+ ..++..+|.++.. .+++++|+.+++++++.. + ..++..+|.+|.
T Consensus 134 ~~~~~~a~~~-------~~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~---~~a~~~lg~~~~ 193 (273)
T 1ouv_A 134 VEYFTKACDL-------ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------D---SPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C---HHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------Cc---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------C---HHHHHHHHHHHH
Confidence 9999999984 22 3457889999999 999999999999998651 1 578899999999
Q ss_pred H----cCCHHHHHHHHHHHHHH
Q 017109 345 S----TGSLMEAQELFERCLEA 362 (377)
Q Consensus 345 ~----~g~~~~A~~~~~~al~~ 362 (377)
. .+++++|+.+++++++.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhC
Confidence 9 99999999999999874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-18 Score=142.75 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=160.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.+.....+...+..+...|++++|+..+.++++..... +........+..+|.++...|++++|+.+++++++...+.
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 34455677788999999999999999999998762211 1112345667789999999999999999999999875432
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.+......++.++|.+|..+|++++|+.++++++++.+.... .+. ...++.++|.+|..+|++++|+.+++++++
T Consensus 149 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 149 --IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp --SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233445779999999999999999999999999988765432 233 337999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH-HHHHHHHHHHHHhc
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA-ETVQRKILHIMESS 324 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 324 (377)
+.+... +......++.++|.+|..+|++++| ..++++++.+.+..
T Consensus 225 ~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 225 ISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 986643 4445677899999999999999999 88899999987665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=154.40 Aligned_cols=191 Identities=18% Similarity=0.109 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH-hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 142 AEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF-DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 142 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
....+++++...+... ...+..+.++..+|.++...|++ ++|+.+++++++. . |....++..+|.+|...
T Consensus 80 ~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~---p~~~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----E---PELVEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----C---CCCHHHHHHHHHHHHHc
Confidence 3444444444443332 22457789999999999999999 9999999999998 3 33467999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 017109 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ---------GKENDSEALFLESIRILEENGEGDSMTCI 291 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (377)
|++++|+.+|++++++. |. ..++.++|.++... |++++|+..+++++++. +...
T Consensus 151 g~~~~A~~~~~~al~~~--------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~ 213 (474)
T 4abn_A 151 GDVTSAHTCFSGALTHC--------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDG 213 (474)
T ss_dssp TCHHHHHHHHHHHHTTC--------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred CCHHHHHHHHHHHHhhC--------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCH
Confidence 99999999999999873 44 48899999999999 99999999999999972 2334
Q ss_pred HHHHHHHHHHHHh--------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 292 RRLRYLAQTYVKA--------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 292 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.++..+|.++... |++++|+.+|++++++... .+....++..+|.+|...|++++|...|++++++.
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5788999999999 9999999999999998321 11558899999999999999999999999999863
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-18 Score=141.28 Aligned_cols=195 Identities=13% Similarity=0.041 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH---HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV---ASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+...+..+...|++++|+..++++++.. +..+.. ...+..+|.++...|++++|+.++++++++....
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 34555666888999999999999999998741 222332 4456679999999999999999999999954332
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.+....+.++.++|.+|..+|++++|+.+++++++..+... .+.+..+.++.++|.+|..+|++++|+.++++++++
T Consensus 149 --~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 149 --IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp --SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 23344567899999999999999999999999999887652 245677889999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHhccC
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANR-LTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 326 (377)
.+... +....+.++.++|.++..+|+ +++|++++++++.+.+....
T Consensus 226 ~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 226 SCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 98875 455677889999999999995 69999999999999877643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=139.57 Aligned_cols=198 Identities=10% Similarity=-0.039 Sum_probs=160.3
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
+.....+...+..+...|++++|+..+.++++..... +........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG- 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence 4455667778899999999999999999998863211 1122344567789999999999999999999999875432
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT-CIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.+......++.++|.+|...|++++|+.++++++++.+... +.+. ...++.++|.+|..+|++++|+.++++++++
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22244577999999999999999999999999999888764 3333 3378999999999999999999999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhhC
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEA-QELFERCLEARKKLM 367 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 367 (377)
..... +......++..+|.+|..+|++++| ..++++++.+.+..-
T Consensus 226 ~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 226 SCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 85532 2334588999999999999999999 888999999887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-18 Score=136.06 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
+..+..+|.++...|++++|+..|+++++. .+ .+ ..++.++|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------ 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL-----TNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKN------ 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----cCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------
Confidence 378999999999999999999999999998 22 22 3577789999999999999999999999774
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
|....++..+|.++...|++++|+..+++++++.+... ........++..+|.++...|++++|+.+|++++++
T Consensus 73 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 146 (228)
T 4i17_A 73 --YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--- 146 (228)
T ss_dssp --CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred --cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---
Confidence 67788999999999999999999999999998733210 001123467899999999999999999999999876
Q ss_pred ccCCCChh--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHH
Q 017109 324 SKGWNSLD--TVIAAEGLALTLQSTGSL---------------------------MEAQELFERCLEA 362 (377)
Q Consensus 324 ~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~ 362 (377)
+|. ...++..+|.++...|+. ++|+.++++++++
T Consensus 147 -----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 147 -----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355 678999999999999988 8899999999885
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-17 Score=134.67 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=161.7
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+|.
T Consensus 49 ~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~ 113 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVLNNYGG 113 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHH
Confidence 3577777777777777542 334678999999999999999999999999987 5566788999999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++.. +....++.
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~ 179 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------RNQPSVAL 179 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cccHHHHH
Confidence 99999999999999999987 12355567899999999999999999999999999874 44567889
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.+|.++...|++++|+.+++++++.. ++ ....+..++.++...|++++|..+++++++..
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-----GQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----cC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999988741 12 23457789999999999999999999998873
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-16 Score=134.38 Aligned_cols=196 Identities=10% Similarity=-0.039 Sum_probs=161.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR---IGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
......+...+..+...|++++|...++++++. .+..+. ....+..+|.++...|++++|+.++++++.+..
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 344555666788899999999999999999874 222222 244556799999999999999999999998643
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
. ..+......++.++|.+|...|++++|+.+++++++..+... .+.+....++.++|.+|..+|++++|+.++++++
T Consensus 147 ~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 147 T--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp C--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 122234567899999999999999999999999999988763 2567788899999999999999999999999999
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhC
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGS-LMEAQELFERCLEARKKLM 367 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 367 (377)
++....... .....++..+|.++..+|+ +++|..++++++.+.+..-
T Consensus 224 ~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 224 EISCRINSM--ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHTTBC--TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCcH--HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 998776433 4458999999999999995 6999999999999998753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-17 Score=131.30 Aligned_cols=174 Identities=20% Similarity=0.151 Sum_probs=151.6
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.|....++..+|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIK--- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 5778899999999999999999999999999987 2333 5789999999999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
+....++..+|.++... |++++|+.+++++++ . +..+....++..+|.++...|++++|+.+++++++
T Consensus 73 -----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 73 -----PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA----D--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -----TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----S--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----C--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567889999999999 999999999999987 1 12344556788999999999999999999999998
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.. |....++..+|.++...|++++|..+++++++..+
T Consensus 142 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 142 AQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 73 33367899999999999999999999999998654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=129.67 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=149.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
......+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|..+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 345688999999999999999999999998865 4556788999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.++. ..++..+|.++...|++++|..++++++... +....++..+|.++...|++++|+.+++++++..
T Consensus 72 ~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 72 APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 2333 5788999999999999999999999999874 4556788999999999999999999999999862
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
++ ...++..+|.++...|++++|..+++++++....
T Consensus 141 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 141 -----PN---EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp -----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred -----cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 12 2456789999999999999999999999987643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-17 Score=129.89 Aligned_cols=183 Identities=10% Similarity=-0.041 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...++.+|..+...|++++|+..|+++++. .|+++....++..+|.++...|++++|+..|+++++.. |+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence 467889999999999999999999999987 45566667899999999999999999999999999874 55
Q ss_pred ChhHHHHHHHHHHHHHH------------------cCChhhHHHHHHHHHHHHHHcCCCCCHH-----------HHHHHH
Q 017109 245 NIDYADTMYHLATVLYL------------------QGKENDSEALFLESIRILEENGEGDSMT-----------CIRRLR 295 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~ 295 (377)
++....+++.+|.++.. .|++++|+..|+++++..+... .... ......
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~--~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ--YTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT--THHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh--hHHHHHHHHHHHHHHHHHHHH
Confidence 56666788889988876 5789999999999988644321 0000 112225
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+|.+|...|++++|+..|+++++.. ++++....++..+|.++..+|++++|...++++....+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 78999999999999999999999875 33455678999999999999999999999998877433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-16 Score=127.88 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++.+|..+...|++++|+..|+++++.. ++++....++..+|.++...|++++|+..|+++++. .|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 4678899999999999999999999999862 334556789999999999999999999999999987 566
Q ss_pred chhHHHHHHHHHHHHHH------------------ccCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------
Q 017109 203 DIRIGVAFHNLGQFYLV------------------QRKLEDACTYYERALKIKGRVLGHGNIDYAD-------------- 250 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------------- 250 (377)
++....+++.+|.++.. .|++++|+..|+++++.. |+++....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 66666788899988876 679999999999998774 33333222
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+|.++...|++++|+..|+++++.. ++.+....++..+|.++..+|++++|++.++.+...
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 22578999999999999999999999873 345667788999999999999999999999877653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-17 Score=142.51 Aligned_cols=240 Identities=16% Similarity=0.123 Sum_probs=197.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC---------CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER---------DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
....|..+...|++++|++.|.++++..+...... ......++..+|.+|...|++++|.+++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999998643321100 123456789999999999999999999999999877
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+. ++......+...++.++...|++++|+.++++++.+....... .....++..+|.++...|++++|..++++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--FLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 64 2334445678889999999999999999999999998765433 5678899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
....... +.+....++..++.+|...|++++|..++++++.+......+ +......+..+|.++...|++++|..++
T Consensus 163 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 163 REFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-TQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8877654 667888899999999999999999999999999987765432 2335678888999999999999999999
Q ss_pred HHHHHHHHhhCCCCCC
Q 017109 357 ERCLEARKKLMPQDHI 372 (377)
Q Consensus 357 ~~al~~~~~~~~~~~~ 372 (377)
.++++.........+.
T Consensus 240 ~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 240 FESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHTTTSSCH
T ss_pred HHHHHHhhhhhhhhhH
Confidence 9999998887655443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=128.12 Aligned_cols=173 Identities=13% Similarity=0.032 Sum_probs=149.5
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.......+..+|.++...|++++|+..++++++. .+. ...++..+|.++...|++++|+.+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--- 72 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA-----DAF---DVDVALHLGIAYVKTGAVDRGTELLERSLADA--- 72 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-----TSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----Ccc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 3456788999999999999999999999998875 222 35789999999999999999999999999873
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+....++..+|.++...|++++|+.+++++++..+ . ...++..+|.++...|++++|+.+++++++.
T Consensus 73 -----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 73 -----PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-----I---NFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp -----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----H---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 55567899999999999999999999999998721 2 2356788999999999999999999999987
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
. +....++..+|.++...|++++|..++++++++.+.
T Consensus 140 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 140 R--------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred C--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3 333688999999999999999999999999997654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=119.96 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=140.2
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+.+..+.++..+|.++...|++++|+.+++++++..+... +....+.++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999988752 45666789999999999999999999999999999876
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
... .+....++.++|.++...|++++|+.++++++++.+... +.+....++..+|.++...|++++|..+++++++
T Consensus 82 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 LKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCC--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 532 355678899999999999999999999999999988865 5667788899999999999999999999999999
Q ss_pred HHHhc
Q 017109 320 IMESS 324 (377)
Q Consensus 320 ~~~~~ 324 (377)
+.++.
T Consensus 158 ~~~~~ 162 (164)
T 3ro3_A 158 ISREV 162 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=120.27 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=140.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.+..+.++..+|.++...|++++|+.+++++++..... ++......++..+|.++...|++++|+.++++++++.+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999999999998876 445667789999999999999999999999999999877
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
. ++.+....++.++|.++...|++++|+.++++++........ .+....++..+|.++...|++++|+.+++++++
T Consensus 82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5 345666789999999999999999999999999999876532 366688899999999999999999999999999
Q ss_pred HHHHc
Q 017109 278 ILEEN 282 (377)
Q Consensus 278 ~~~~~ 282 (377)
+.++.
T Consensus 158 ~~~~~ 162 (164)
T 3ro3_A 158 ISREV 162 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-18 Score=159.19 Aligned_cols=200 Identities=13% Similarity=-0.034 Sum_probs=160.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|++++|+..++++++..-......+|....++..+|.++...|++++|+..++++++. .+++ ..+++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWR---WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCC---HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----Ccch---HHHHHHH
Confidence 7789999999999999821111111226777889999999999999999999999999997 2333 5799999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
|.++..+|++++|+..|++++++. |....++.++|.++...|++++ +..|++++++ .+....+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a 536 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISA 536 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHH
Confidence 999999999999999999999985 6667889999999999999999 9999999987 2233457
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhh
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA-QELFERCLEARKKL 366 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 366 (377)
+.++|.++..+|++++|+..|++++++ .|....++..+|.++...++.+++ ..-++++++....+
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 899999999999999999999999876 366688999999999887775555 66677777766654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=133.36 Aligned_cols=221 Identities=11% Similarity=0.006 Sum_probs=169.3
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|+|.++.....+... . ++.........+++.|...|++++|+..++. . .+....++..+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~----~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~-~~~~~~a~~~l 71 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP----S--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------S-SAPELQAVRMF 71 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC----C--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------T-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc----C--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------c-CChhHHHHHHH
Confidence 4557888888877654322 1 1222345667789999999999999976643 1 34467888999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+..+...|++++|++.+++.+.. + .+|....++..+|.++...|++++|+..+++ +....+
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~-----~-~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~~~ 132 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSR-----S-VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSLEC 132 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHS-----C-CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhc-----c-cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCHHH
Confidence 99999999999999999998763 1 1233357899999999999999999999987 233568
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++..+|++++|+..++++++.. ++... ......+..++...|++++|+..|+++++.. |.
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------p~ 198 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQD-----EDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------SP 198 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------CC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------CC
Confidence 8899999999999999999999999872 23221 1111112233445589999999999999872 34
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...++..+|.++...|++++|...+++++++
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999985
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=124.53 Aligned_cols=166 Identities=15% Similarity=0.157 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH----------------HHHHHHHhcCHhHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN----------------LAELYRVKKAFDKAEP 186 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 186 (377)
+..+...|..+...|++++|+..|+++++. +|....++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788999999999999999999999998 7888888888 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-
Q 017109 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKE- 265 (377)
Q Consensus 187 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 265 (377)
.|++++++ .|+ ...++..+|.++...|++++|+.+|++++++. |....++.++|.++...|+.
T Consensus 76 ~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK-----APN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--------ADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhHHH
Confidence 99999998 333 36889999999999999999999999999984 66778999999999877643
Q ss_pred -hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 266 -NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 266 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
..+...+.+++. + .+ ....++.+|.++...|++++|+.+|++++++.
T Consensus 140 ~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 140 KKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555432 1 22 22356778999999999999999999999873
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=127.54 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=122.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.++++++++ .|+ ..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~---~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QER---DP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CH
Confidence 4788889999999999999999854 6788889999999999999999999999999998 333 46
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHH-HHHHHHHHHHcCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL-FLESIRILEENGEGD 286 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 286 (377)
.++..+|.++...|++++|+.+|++++++. |....++.++|.++...|++++|... +++++++. |+
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-----P~ 132 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-----PG 132 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----TT
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----cC
Confidence 899999999999999999999999999984 66778999999999999999987765 58999872 23
Q ss_pred CHHHHHHHHHHHHHHHHhCC
Q 017109 287 SMTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~ 306 (377)
+ ..++...+.++..+|+
T Consensus 133 ~---~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 S---PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp C---HHHHHHHHHHHHTCCC
T ss_pred C---HHHHHHHHHHHHHhCc
Confidence 3 3456677888877775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-18 Score=125.59 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=122.5
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++. |...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--------p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--------ERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCH
Confidence 4788999999999999999998765 55556788999999999999999999999999984 6778
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHH-HHHHHHHHHhccCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETV-QRKILHIMESSKGWN 328 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 328 (377)
.++..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|... +++++++.
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~------- 130 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF------- 130 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------
Confidence 89999999999999999999999999997 223345789999999999999887765 58999883
Q ss_pred ChhHHHHHHHHHHHHHHcCC
Q 017109 329 SLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~ 348 (377)
|....++...+.++..+|+
T Consensus 131 -P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 -PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -TTCHHHHHHHHHHHHTCCC
T ss_pred -cCCHHHHHHHHHHHHHhCc
Confidence 4446778888999988875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=135.54 Aligned_cols=234 Identities=9% Similarity=-0.003 Sum_probs=194.0
Q ss_pred hhcccCCChhhhhhhhhhhhcccccccc----------chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSN----------IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE 159 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 159 (377)
......|++++|...+.+.+...+..+. .......++..+|.+|...|++++|.+++.+++...... +
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~ 89 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF--A 89 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--C
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--c
Confidence 3456679999999999998876554321 223445678999999999999999999999999987765 3
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+......+...++.++...|++++|+.++++++....+.. +......++..+|.++...|+|++|..++++++.....
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 3334556778899999999999999999999999988763 45566889999999999999999999999999888765
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
. .+.+....++..++.+|...|++++|..++++++.+...... ........+..+|.++...|++++|..++.++++
T Consensus 168 ~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 168 L--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp S--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred c--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 345778899999999999999999999999999999887652 2344567788999999999999999999999999
Q ss_pred HHHhccCCCCh
Q 017109 320 IMESSKGWNSL 330 (377)
Q Consensus 320 ~~~~~~~~~~~ 330 (377)
...........
T Consensus 245 ~~~~~~~~~~~ 255 (434)
T 4b4t_Q 245 SYHNLTTHNSY 255 (434)
T ss_dssp HHHHTTTSSCH
T ss_pred HhhhhhhhhhH
Confidence 88777655554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=134.30 Aligned_cols=223 Identities=9% Similarity=0.042 Sum_probs=175.5
Q ss_pred hhhhhhhhhhccccccccchhhhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHHhhCCCCCHhH
Q 017109 100 GENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFL-------QGKL-------AEAEKLFLSALQ-EAKEGFGERDPHV 164 (377)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~ 164 (377)
++...+.+++. ..|....++..+|..+.. .|++ ++|+..|+++++ + .|..
T Consensus 34 ~a~~~~~~al~-------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~ 98 (308)
T 2ond_A 34 RVMFAYEQCLL-------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKN 98 (308)
T ss_dssp HHHHHHHHHHH-------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTC
T ss_pred HHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cccc
Confidence 44455555553 345566788888888764 5886 899999999997 4 5677
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++..+|.++...|++++|...|++++++ .|.++. .++..+|.++...|++++|...|+++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 164 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA------- 164 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Confidence 789999999999999999999999999986 344432 278999999999999999999999998763
Q ss_pred ChhHHHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 245 NIDYADTMYHLATVLYL-QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
|....++...+.+... .|++++|...|+++++..+. ...++..++.++...|++++|..+|++++....
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~- 234 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS- 234 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-
Confidence 2224455555555433 79999999999999997432 245678899999999999999999999987410
Q ss_pred ccCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 324 SKGWNSL-DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 324 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
-.| .....+..++.++...|+.++|...++++++..++
T Consensus 235 ----l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 235 ----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp ----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred ----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 012 23678888999999999999999999999997665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=124.71 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH----------------HHHHHHHccCHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN----------------LGQFYLVQRKLEDACT 228 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 228 (377)
+..+...|..+...|++++|+..|+++++. +|....++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778899999999999999999999998 4555667777 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCh-
Q 017109 229 YYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL- 307 (377)
Q Consensus 229 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 307 (377)
.|++++++. |....++..+|.++...|++++|+..|++++++ .|....++.++|.+|...|+.
T Consensus 76 ~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 999999984 667889999999999999999999999999997 223346788999999877654
Q ss_pred -hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 308 -TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 308 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
..+...+++++. + .+ ...++..+|.++...|++++|+.+|++++++.+
T Consensus 140 ~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 140 KKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 344555554431 1 12 234677789999999999999999999998543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=135.97 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=118.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|+|++|+.++++++++.++.+|+++|..+.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++..++++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
|.+|..+|++++|+.++++|+++.....|++||.+..+..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999988877664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-17 Score=133.80 Aligned_cols=216 Identities=13% Similarity=-0.039 Sum_probs=165.5
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+++... |....++..+|.++...|++++|+.+++++++. .|....++..+|
T Consensus 54 ~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la 118 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRG 118 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHH
Confidence 34688899998888888653 234578999999999999999999999999987 566678999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|+.+++++++. .|+.+ .....++ +....|++++|+..+++++... ++.. ..
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~-----~~~~~---~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~ 180 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD-----DPNDP---FRSLWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKEQ----WG 180 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCCS----TH
T ss_pred HHHHHhccHHHHHHHHHHHHHh-----CCCCh---HHHHHHH-HHHHhcCHHHHHHHHHHHHhcC-----Ccch----HH
Confidence 9999999999999999999987 34443 2222333 4467799999999999998764 2122 12
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++.++...++.++|+..+++++...+.. .+....++..+|.++...|++++|+.++++++... +++
T Consensus 181 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--- 248 (275)
T 1xnf_A 181 WNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----VHN--- 248 (275)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CTT---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----chh---
Confidence 357778888899999999999988754432 23446788999999999999999999999998762 211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+...+.++...|++++|+..+
T Consensus 249 ---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHhhHHHH
Confidence 122366778889999988876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=150.34 Aligned_cols=201 Identities=11% Similarity=-0.008 Sum_probs=162.2
Q ss_pred hcccCCChhhhhhhhhhhhccc-cccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDG-SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
.....|++++|...+.+++... ......+|....++..+|.++...|++++|+..|+++++. +|....+++
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~ 471 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVW 471 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHH
Confidence 3467899999999988887321 1112244556688999999999999999999999999988 567788999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
++|.++...|++++|+..|++++++ .|++ ..++.++|.++..+|++++ +..|++++++. |...
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~ 534 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDT-----FPGE---LAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVI 534 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchH
Confidence 9999999999999999999999998 3333 5789999999999999999 99999999984 6677
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH-HHHHHHHHHHHHhc
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA-ETVQRKILHIMESS 324 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 324 (377)
.+++++|.++...|++++|+..|++++++ .+....++.++|.++...++.+++ ...++++++.....
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 89999999999999999999999999875 445667789999999887776665 66777777776555
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-16 Score=134.89 Aligned_cols=135 Identities=11% Similarity=0.000 Sum_probs=127.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
....-+...|++++|+..+++++++.++.++++++..+.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33445667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ 262 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (377)
..++++|.+|..+|++++|+.++++|+++.....|++||.+..++.+|+.+....
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=111.81 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=105.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-+|..+..+..+|..++..|++++|+..|++++++ +|....++.++|.++..+|++++|+..+++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 46788999999999999999999999999999998 7888899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
. |....++.++|.++..+|++++|+..|++++++. |....++..++.++
T Consensus 77 --~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 --D---SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD--------PSNEEAREGVRNCL 125 (126)
T ss_dssp --C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHC
T ss_pred --h---hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------cCCHHHHHHHHHhc
Confidence 3 3346789999999999999999999999999984 66667777777653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=132.84 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=117.6
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|+|++|+..+++++++.++..+++||..+.++.++|.+|..+|++++|+.++++++++.++..++++|.++..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA 340 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 340 (377)
|.+|..+|++++|+.+|++|+++.+...|++||.+..+..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999998888776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-15 Score=125.93 Aligned_cols=183 Identities=14% Similarity=0.034 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-------hcCH-------hHHHHHHHHHHH-HHHHhcCCCch
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-------KKAF-------DKAEPLYLEAIK-ILQESFGPEDI 204 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~ 204 (377)
++|+..|++++.. .|....++..+|..+.. .|++ ++|...|+++++ + .|
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK 96 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cc
Confidence 7899999999987 57778888899888764 5885 899999999998 4 23
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD-TMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
....++..+|.++...|++++|...|++++++. |.... ++..+|.++...|++++|...|+++++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--- 165 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--- 165 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT---
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---
Confidence 335789999999999999999999999999863 33233 789999999999999999999999987522
Q ss_pred CCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.. ..++...+.+... .|++++|...|+++++.. |....++..++.++...|++++|...|++++..
T Consensus 166 --~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 166 --TR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp --CC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred --CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22 2334444444333 699999999999999985 333788899999999999999999999999873
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=131.34 Aligned_cols=133 Identities=10% Similarity=-0.006 Sum_probs=126.4
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..-+..+|++++|+..+++++++.++..+++++.++.++.++|.+|..+|+|++|+.++++++++.++..+++||..+..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (377)
+++||.+|..+|++++|+.++++++++.+...++++|.+..++.+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=125.89 Aligned_cols=170 Identities=12% Similarity=-0.000 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....+..+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++.. .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----D 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----G
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----h
Confidence 44577899999999999999999999999998 7788899999999999999999999999998775 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
| .........+..+...++.++|+..+++++... |....++.++|.++...|++++|+..++++++..+
T Consensus 182 p---~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 182 Q---DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp C---SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred c---chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 2 334566777778889999999999999999884 77788999999999999999999999999999732
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.. ....++..++.++...|+.++|...|++++..
T Consensus 251 ~~------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 251 TA------ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp TG------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cc------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 21 12456889999999999999999999998865
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-14 Score=126.50 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ-----RKLEDACTYYERALKI 236 (377)
Q Consensus 166 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~ 236 (377)
.++..+|.+|.. .+++++|+.+|+++.+. .+ ..++..+|.+|... +++++|+.+|+++.+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 344555555555 55555555555555432 11 24566677777666 6777777777776553
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhH
Q 017109 237 KGRVLGHGNIDYADTMYHLATVLYLQG---KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTD 309 (377)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 309 (377)
....++.++|.++...| ++++|+.+|+++.+. .+ ..++.++|.+|.. .+++++
T Consensus 326 ----------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 326 ----------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ----------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHH
Confidence 12356777888887766 677888888887763 11 3567889999998 899999
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 017109 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS----TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 310 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 363 (377)
|+.+|+++.+. + + ..++..+|.+|.. .+++++|..+|+++++..
T Consensus 386 A~~~~~~A~~~-----~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 386 AAIWMRKAAEQ-----G--L---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----C--C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999998763 1 1 6788999999998 899999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=119.09 Aligned_cols=166 Identities=13% Similarity=0.028 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..+..+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++.. .| +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-C
Confidence 45778899999999999999999999987 7888899999999999999999999999998775 33 3
Q ss_pred hhHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 204 IRIGVAFHNLGQFY-LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 204 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
+ .....++.+. ...+...+|+..++++++.. |....++..+|.++...|++++|+..++++++..+..
T Consensus 73 ~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 73 N---SYKSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp H---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred h---HHHHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 3 2233334332 23344456899999999874 6677899999999999999999999999998862211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....++..+|.++...|+.++|+..|++++..
T Consensus 142 ------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 142 ------QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 12345788999999999999999999998764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=107.77 Aligned_cols=102 Identities=14% Similarity=0.201 Sum_probs=94.8
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|..+..+.++|..++..|++++|+..|++++++ . |....++.++|.++..+|++++|+..+++++++.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--- 77 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----D---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--- 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---
Confidence 7999999999999999999999999999999998 3 3346899999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++.++|.++..+|++++|+..|++++++
T Consensus 78 -----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 -----SKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666789999999999999999999999999998
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-14 Score=126.00 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=96.0
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFL----QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.+++++|..++.++.+.. ...+++.+|.+|.. .+++++|+.+|+++.+. ....++..
T Consensus 56 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~ 116 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----------GLPQAQQN 116 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHH
Confidence 467777777777766431 23577778888887 78888888888887753 13456677
Q ss_pred HHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcC
Q 017109 171 LAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 171 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
+|.+|.. .+++++|+.+|+++.+. .+ ..++..+|.+|.. .+++++|+.+|+++.+.
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------ 180 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------ 180 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------
Confidence 7777777 67788888888777653 12 3566777777776 66777777777776543
Q ss_pred CCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYL----QGKENDSEALFLESIR 277 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 277 (377)
....++..+|.+|.. .+++++|+.+|+++.+
T Consensus 181 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 181 ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 113455666666665 5666666666666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=121.16 Aligned_cols=169 Identities=15% Similarity=0.054 Sum_probs=145.0
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
|.....+..+|..+...|++++|+..|+++++. .|++ ..++..+|.++...|++++|+..+++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQD---- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----
Confidence 455678899999999999999999999999998 3444 5789999999999999999999999987763
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
|.........+..+...++.++|+..+++++.. .|....++.++|.++...|++++|+..|++++...
T Consensus 182 ----p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 182 ----QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp ----CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 444556667777788899999999999999987 23345678899999999999999999999999873
Q ss_pred HhccCCCChhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 322 ESSKGWNSLDT--VIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 322 ~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|.. ..++..++.++...|+.++|...|++++..
T Consensus 250 --------p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 --------LTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp --------TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------cccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 333 678999999999999999999999999874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=115.03 Aligned_cols=176 Identities=16% Similarity=0.093 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 141 EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 141 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+. .+ ..+++++|.+|..
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~---~~a~~~lg~~y~~- 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GD---GDALALLAQLKIR- 62 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHc-
Confidence 577888888863 34678999999999999999999999999874 23 4789999999998
Q ss_pred c----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 221 R----KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 221 g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
+ ++++|+.+|+++.+. ....+++++|.+|.. .+++++|+.+|+++.+. .+......
T Consensus 63 ~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~ 126 (212)
T 3rjv_A 63 NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVD 126 (212)
T ss_dssp STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHH
Confidence 7 999999999999542 346789999999988 89999999999999864 11124467
Q ss_pred HHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-G-----SLMEAQELFERCLEA 362 (377)
Q Consensus 293 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 362 (377)
++.+||.+|.. .+++++|+.+|+++.+.. .+ ..++..||.+|... | ++++|..+|+++.+.
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS------RT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS------CT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 78999999999 889999999999998651 11 45789999999864 3 899999999999875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-14 Score=103.19 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=99.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.++.+.++..+|..++..|+|++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++....
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 4567788999999999999999999999999998 77888999999999999999999999999999987665
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.......+.++.++|.++..+|++++|+.+|++++...
T Consensus 76 -~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 76 -RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 33456678899999999999999999999999998863
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=118.99 Aligned_cols=211 Identities=13% Similarity=-0.054 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH-------HHHHHHhcCHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL-------AELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~ 194 (377)
....++..|.-+ ..+++..|.+.|.+++++ +|..+.++..+ +.++...++..+++..+++.+.+
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l 76 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI 76 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566677776 689999999999999998 89999999999 89999999999999999999886
Q ss_pred HHHhcCCCch-------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 195 LQESFGPEDI-------------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 195 ~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
.....+.... .-..+...++.++...|+|++|.+.|...+.. .|... ..+.+|.++..
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence 4433221111 12456777899999999999999999887653 25555 88999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMT-CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGL 339 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l 339 (377)
.+++++|+.+++++... .++. ...+++.+|.++..+|++++|+.+|++++. ++..|. ...+.+.+
T Consensus 148 ~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYL 214 (282)
T ss_dssp TTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHH
Confidence 99999999999866442 1232 345789999999999999999999999873 222133 57889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
|.++..+|+.++|...|++++...
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999853
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=115.83 Aligned_cols=167 Identities=11% Similarity=-0.033 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...+..+|..+...|++++|+..++++++. +|....++..+|.++...|++++|+..+++++... +
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p- 71 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-----Q- 71 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-
Confidence 345778999999999999999999999987 34446889999999999999999999999987663 2
Q ss_pred ChhHHHHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 245 NIDYADTMYHLATVL-YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 245 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
++ .....++.+. ...++..+|+..++++++. .|....++..+|.++...|++++|+..|+++++..
T Consensus 72 ~~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-- 138 (176)
T 2r5s_A 72 DN---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN-- 138 (176)
T ss_dssp CH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred Ch---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--
Confidence 22 2333334332 2334455689999999986 22334668899999999999999999999998762
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
++ +....++..++.++...|+.++|...|++++..
T Consensus 139 ---p~-~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 ---LG-AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ---TT-TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ---cc-cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 11 112458889999999999999999999998864
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-15 Score=134.66 Aligned_cols=154 Identities=13% Similarity=0.018 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
.|++++|+..++++++. +|....++..+|.++...|++++|+.+++++++. . +....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----H---PGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----S---TTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHH
Confidence 47899999999999987 6777889999999999999999999999999987 3 333678999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
++..+|++++|+.+++++++.. |....++.++|.++...|++++|+..++++++.. +....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 9999999999999999999984 5567899999999999999999999999999872 22245688
Q ss_pred HHHHHHHHh---CChhHHHHHHHHHHHHH
Q 017109 296 YLAQTYVKA---NRLTDAETVQRKILHIM 321 (377)
Q Consensus 296 ~la~~~~~~---g~~~~A~~~~~~al~~~ 321 (377)
.+|.++... |++++|.+.++++++..
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999999999 99999999999999874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-14 Score=104.85 Aligned_cols=106 Identities=23% Similarity=0.281 Sum_probs=97.5
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
-..+|....+++.+|..+...|++++|+..|++++.+ +|....++.++|.++...|++++|+..|++++++
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l- 99 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL- 99 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-
Confidence 3456778899999999999999999999999999998 7888999999999999999999999999999998
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|++ ..+++++|.++..+|++++|+..|++++++.
T Consensus 100 ----~P~~---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 ----GKND---YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----SSSC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444 4789999999999999999999999999984
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=110.65 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=94.6
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|....+++.+|.++...|++++|+..|++++.+ .|+ ...++.++|.++..+|++++|+..|++++.+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--- 100 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--- 100 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 7899999999999999999999999999999998 333 45789999999999999999999999999995
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....+++++|.++...|++++|+..|++++++
T Consensus 101 -----P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 -----KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -----SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566778999999999999999999999999998
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=133.28 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=120.6
Q ss_pred hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 178 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
.|++++|+..++++++. .+....++..+|.++...|++++|+.+++++++.. |....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--------PGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------TTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 47899999999999987 23335789999999999999999999999999874 566789999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 337 (377)
++...|++++|+.++++++++. +....++.++|.++...|++++|+++++++++.. |....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 9999999999999999999872 2234578899999999999999999999999873 34478899
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHHHh
Q 017109 338 GLALTLQST---GSLMEAQELFERCLEARKK 365 (377)
Q Consensus 338 ~la~~~~~~---g~~~~A~~~~~~al~~~~~ 365 (377)
.++.++... |++++|...++++++..+.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 999999999 9999999999999986543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=122.39 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=122.7
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC-------CCHhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE-------RDPHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
...|..+.++..+|.++...|++++|+..|++++++....... ..+....++.++|.++...|++++|+.+++
T Consensus 141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567788999999999999999999999999999983211000 012236899999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhH-
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS- 268 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A- 268 (377)
+++++ . |....+++++|.++..+|++++|+..|++++++. |....++..++.++...|++++|
T Consensus 221 ~al~~-----~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 221 KALEL-----D---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHH-----C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-----C---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 3 3346789999999999999999999999999984 56677899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 017109 269 EALFLESIRILE 280 (377)
Q Consensus 269 ~~~~~~al~~~~ 280 (377)
...|++++....
T Consensus 285 ~~~~~~~~~~~~ 296 (336)
T 1p5q_A 285 KKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 456777765543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-13 Score=99.10 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+..+.++.++|..+...|+|++|+.+|++++++. |....++.++|.++..+|++++|+..+++++++.+...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 4457789999999999999999999999999984 66688999999999999999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
......+.++.++|.++..+|++++|+++|++++..
T Consensus 77 -~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 -ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235567788999999999999999999999999876
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-15 Score=125.80 Aligned_cols=164 Identities=10% Similarity=0.060 Sum_probs=135.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-------CchhHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-------EDIRIG 207 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 207 (377)
..+++++|+..++++++. .|..+.++..+|.++...|++++|+..|++++.+....... ..+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 456777888888888776 67889999999999999999999999999999983321000 012236
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.++.++|.++..+|++++|+.++++++++. |....+++++|.++...|++++|+..|++++++. ++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~- 262 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PN- 262 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CC-
Confidence 799999999999999999999999999984 6667899999999999999999999999999972 22
Q ss_pred HHHHHHHHHHHHHHHHhCChhHH-HHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDA-ETVQRKILHIME 322 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 322 (377)
...++..++.++..+|++++| ...|++++....
T Consensus 263 --~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 263 --NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 235688999999999999999 557777776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-13 Score=100.08 Aligned_cols=131 Identities=28% Similarity=0.529 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+++.+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.. .+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc
Confidence 46788999999999999999999999986 4556778899999999999999999999999987 3333
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
..++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|..+++++++.
T Consensus 69 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 69 ---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4678899999999999999999999999873 444678889999999999999999999999876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=109.59 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc----CHhHHHHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK----AFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~ 197 (377)
...+++.+|.+|...+++++|+.+|+++.+. ....++.++|.+|.. + ++++|+.+|+++.+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--- 82 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--- 82 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence 3578999999999999999999999999864 236789999999998 7 999999999999653
Q ss_pred hcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDSE 269 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 269 (377)
.+ ..++.++|.+|.. .+++++|+.+|+++.+.- + ....+.++++||.+|.. .+++++|+
T Consensus 83 ----g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 83 ----GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-----E-SDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp ----TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-----T-SHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred ----CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-----C-CcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 23 4689999999998 899999999999998752 1 11457899999999999 88999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-C-----ChhHHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA-N-----RLTDAETVQRKILHI 320 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 320 (377)
.+|+++.+. +.+. .++.++|.+|... | ++++|+.+|+++.+.
T Consensus 150 ~~~~~A~~~-----~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 150 EYFKGSSSL-----SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHT-----SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999874 1121 2578999999864 3 899999999999876
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-13 Score=103.57 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=120.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+..+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 76 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---- 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3456788999999999999999999999999987 5666889999999999999999999999999997
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.++ ...++..+|.++...|++++|+.++++++... +.++. ......++..+...|++++|+..+.++..+
T Consensus 77 -~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 -DKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp -CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Ccc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 333 35789999999999999999999999999884 22221 223355666688899999999999999888
Q ss_pred HHHcC
Q 017109 279 LEENG 283 (377)
Q Consensus 279 ~~~~~ 283 (377)
.....
T Consensus 147 ~~~~~ 151 (166)
T 1a17_A 147 VDSLD 151 (166)
T ss_dssp HHHCC
T ss_pred hcccc
Confidence 77654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=123.44 Aligned_cols=213 Identities=10% Similarity=0.063 Sum_probs=168.7
Q ss_pred hhhhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhH
Q 017109 119 HTSKWRVFTDSGRDYFL-------QGKLA-------EAEKLFLSALQ-EAKEGFGERDPHVASACNNLAELYRVKKAFDK 183 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 183 (377)
.|....++...|..+.. .|+++ +|+..|+++++ . .|....++..+|.++...|++++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--------~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--------CSSCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHhcCCHHH
Confidence 34556889999999886 79987 88888888885 3 56678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHc
Q 017109 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV-LYLQ 262 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~ 262 (377)
|...|++++++ .+.++ ..++..++.++...|++++|...|+++++.. +.....+...+.+ +...
T Consensus 340 A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--------~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 340 VHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--------TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHHc
Confidence 99999999986 33333 3588999999999999999999999998752 2223334444444 3468
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHHHH
Q 017109 263 GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGLAL 341 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~ 341 (377)
|++++|...|+++++..+ ++ ..++..++.++...|+.++|..+|++++... +.+|. ...++.....
T Consensus 405 ~~~~~A~~~~e~al~~~p-----~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-----~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYG-----DI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLA 471 (530)
T ss_dssp CCHHHHHHHHHHHHHHHT-----TC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-----CSCGGGCHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHCC-----CC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-----CCCHHHHHHHHHHHHH
Confidence 999999999999998743 22 3567889999999999999999999998752 22232 3456777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 342 TLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 342 ~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
.....|+.+.+..+++++++..++-.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 88889999999999999999988543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-13 Score=96.40 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|..+...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++ .
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~ 68 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----D 68 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C
Confidence 45678999999999999999999999999998 6777899999999999999999999999999998 3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY 260 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 260 (377)
|+ ...++..+|.++...|++++|+..+++++++....... |....+...++.+..
T Consensus 69 p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~--p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 69 PN---FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG--SSAREIDQLYYKASQ 123 (126)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHH
T ss_pred CC---cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCc--hhHHHHHHHHHHHHH
Confidence 33 36789999999999999999999999999987443222 445556666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=104.16 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC
Q 017109 143 EKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK 222 (377)
Q Consensus 143 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 222 (377)
...+++++.+ +|....++..+|.++...|++++|+..|++++.. .|++ ..++..+|.++...|+
T Consensus 7 ~~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~ 70 (148)
T 2vgx_A 7 GGTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYD---SRFFLGLGACRQAMGQ 70 (148)
T ss_dssp CCSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Cccc---HHHHHHHHHHHHHHhh
Confidence 3456666654 7889999999999999999999999999999987 3333 5788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 223 LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
+++|+..|++++.+. |....+++++|.++...|++++|+..|++++++.+.
T Consensus 71 ~~~A~~~~~~al~l~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 71 YDLAIHSYSYGAVMD--------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999984 555678999999999999999999999999998653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-13 Score=97.04 Aligned_cols=131 Identities=25% Similarity=0.433 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.++..+|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 46788999999999999999999999886 2333 5678899999999999999999999998873
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+....++..+|.++...|++++|+.+++++++..+ .. ..++..+|.++...|++++|..++++++..
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 44467788999999999999999999999988621 22 345778999999999999999999999875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-13 Score=96.13 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+..+|..+...|++++|+..|+++++. .|+ ...++.++|.++...|++++|+..+++++++.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 68 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD----- 68 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----
Confidence 45678899999999999999999999999998 333 35899999999999999999999999999984
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV 302 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 302 (377)
|....++..+|.++...|++++|+..+++++++.+... +.+....+...++.+..
T Consensus 69 ---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 69 ---PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ 123 (126)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence 66678999999999999999999999999999875543 22333444555555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=99.42 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+..+|.++...|++++|+.+++++++. .++ ...++..+|.++...|++++|+.++++++...
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 77 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD----- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 45778899999999999999999999999997 233 35789999999999999999999999999884
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
|....++..+|.++...|++++|+.++++++++.+ ... .......++..+...|++++|+..+.++..+..
T Consensus 78 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-----~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 78 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-----HDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 55577899999999999999999999999998732 222 222345566668899999999999999888775
Q ss_pred hc
Q 017109 323 SS 324 (377)
Q Consensus 323 ~~ 324 (377)
..
T Consensus 149 ~~ 150 (166)
T 1a17_A 149 SL 150 (166)
T ss_dssp HC
T ss_pred cc
Confidence 53
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=95.08 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=110.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+.....+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 56677889999999999999999999999999987 5566789999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN 266 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (377)
.+++ ..++..+|.++...|++++|+.++++++... |....++..++.++...|+++
T Consensus 76 --~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 --DPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALELD--------PDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp --CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTTCC
T ss_pred --CccC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHHhcCC
Confidence 3333 5789999999999999999999999999884 555678889999999988763
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=96.42 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=94.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|....+++.+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--- 84 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--- 84 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 34667788999999999999999999999999988 7778899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|++ ..+++++|.++...|++++|+..|++++++.
T Consensus 85 --~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 --DIXE---PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp --STTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4444 4788999999999999999999999999986
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-13 Score=96.95 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=109.1
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
....+.....+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 79 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL- 79 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 3456677899999999999999999999999999976 5666889999999999999999999999999997
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (377)
.++ ...++..+|.++...|++++|+.++++++... |....++..++.++..+|+
T Consensus 80 ----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred ----CCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence 333 35789999999999999999999999999884 5666788899999887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=106.51 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++.+|..+...|++++|+..|++++. + ...++..+|.++...|++++|+.++++++.. .
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-- 67 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----D-- 67 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C--
Confidence 45578899999999999999999998851 1 3568999999999999999999999999997 2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL--------GHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+....++.++|.++...|++++|+..++++++...... ....+....++.++|.++...|++++|+..+++
T Consensus 68 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 68 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33357899999999999999999999999998752210 002245668999999999999999999999999
Q ss_pred HHHH
Q 017109 275 SIRI 278 (377)
Q Consensus 275 al~~ 278 (377)
++++
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9986
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=107.84 Aligned_cols=224 Identities=8% Similarity=0.008 Sum_probs=179.9
Q ss_pred cCCCh-hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 94 SQNDT-EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG--KLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 94 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
..|.+ ++|...+.+++. -.|....+++..+.++...| ++++++.++.+++.. +|....+++.
T Consensus 44 ~~~e~s~~aL~~t~~~L~-------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~ 108 (306)
T 3dra_A 44 KAEEYSERALHITELGIN-------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNY 108 (306)
T ss_dssp HTTCCSHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH-------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHH
Confidence 34455 456666666654 34556689999999999999 999999999999987 7788888888
Q ss_pred HHHHH----HHh---cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHhc
Q 017109 171 LAELY----RVK---KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE--DACTYYERALKIKGRVL 241 (377)
Q Consensus 171 la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~ 241 (377)
.+.++ ... +++++++.++.++++. +|....++...+.+....|.++ ++++++.++++..
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---- 176 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---- 176 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC----
Confidence 88888 666 7899999999999987 3444689999999999999998 9999999999873
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC------hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH-HHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGK------ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD-AETVQ 314 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 314 (377)
+....++...+.+....++ ++++++++.+++.. +|....++..++.++...|+..+ ...++
T Consensus 177 ----~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 177 ----LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ----TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ----CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 6777899999999998887 89999999999986 23334568889999999998655 44455
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.++++.. ...+....++..++.++.+.|+.++|+++++.+.+
T Consensus 245 ~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5555431 01234468899999999999999999999999875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-14 Score=117.40 Aligned_cols=195 Identities=18% Similarity=0.084 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+..+|..+...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4578899999999999999999999999988 6677889999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.|....+++.+|.++..+|++++|+..+++++++.......-. .. +. .... ..++..... ....
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~--~~-----~~~~---~~~~~~~~~----~~~~ 131 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DD--IP-----SALR---IAKKKRWNS----IEER 131 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SH--HH-----HHHH---HHHHHHHHH----HHHT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HH--HH-----HHHH---HHHHHHHHH----HHHH
Confidence 3333578999999999999999999999999998743211100 11 11 1111 111111111 1111
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-GSLMEAQELFERCL 360 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 360 (377)
. .+..+.. ...++.+. .|++++|++.++++++. .|........++.++... +.+++|...|.++.
T Consensus 132 ~-~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 132 R-IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp C-CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred H-HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 1222222 23344443 68999999999888765 233345555666666655 67888888888776
Q ss_pred H
Q 017109 361 E 361 (377)
Q Consensus 361 ~ 361 (377)
+
T Consensus 198 ~ 198 (281)
T 2c2l_A 198 E 198 (281)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=99.54 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=95.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.+..+..+..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+.++++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 45567889999999999999999999999999998 6777899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
. +....++.++|.++..+|++++|+.+|++++++.
T Consensus 75 --~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 --D---PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp --C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --C---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3 3336889999999999999999999999999986
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=94.06 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC----CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG----ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.+..+...|..++..|+|++|+..|++++++...... ...|....++.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5677889999999999999999999999998533100 001224569999999999999999999999999998666
Q ss_pred hcCCCchhHHHHH----HHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAF----HNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 198 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
. ++-+|....+| +++|.++..+|++++|+..|++++++...
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 34566677888 99999999999999999999999999744
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-12 Score=114.03 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHH
Q 017109 125 VFTDSGRDYFLQG---KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 125 ~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~ 197 (377)
+++.+|.+|...| ++++|+.+|+++.+. .+..+..++++|.+|... +++++|+.+|+++. .
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--- 245 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--- 245 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---
Confidence 7899999999999 999999999999976 455667778999999766 79999999999987 1
Q ss_pred hcCCCchhHHHHHHHHHHH-H--HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-----ChhhHH
Q 017109 198 SFGPEDIRIGVAFHNLGQF-Y--LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-----KENDSE 269 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~ 269 (377)
.+ ..+++++|.+ + ...+++++|+.+|+++.+. ....+++++|.+|. .| ++++|+
T Consensus 246 ----g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 246 ----GY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp ----GS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred ----CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 22 3688999998 4 5689999999999998753 24678999999998 55 999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS 345 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 345 (377)
.+|+++. . .+ ..++.++|.+|.. ..++++|..+|+++.+. .+ ..+...+|.+|..
T Consensus 308 ~~~~~Aa-~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 308 AHFEKAV-G-------RE---VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHTTT-T-------TC---HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TC---TTHHHHHHHHHHS
T ss_pred HHHHHHh-C-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------Ch---HHHHHHHHHHHHh
Confidence 9999987 1 22 3567899998887 34999999999998753 12 5678899999985
Q ss_pred ----cCCHHHHHHHHHHHHH
Q 017109 346 ----TGSLMEAQELFERCLE 361 (377)
Q Consensus 346 ----~g~~~~A~~~~~~al~ 361 (377)
..++++|..+|+++.+
T Consensus 367 G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 5689999999998865
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-14 Score=127.69 Aligned_cols=180 Identities=18% Similarity=0.155 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|..+...|++++|+..|+++++. +|....++.++|.++..+|++++|+.++++++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 69 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 69 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 44566777888999999999999999999998 6777899999999999999999999999999987
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChhhHHHHHH-----
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV--LYLQGKENDSEALFL----- 273 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~----- 273 (377)
+|....++.++|.+|..+|++++|+..+++++++. |....++..++.+ +..+|++++|+..++
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 33346789999999999999999999999999884 3444566677777 888999999999999
Q ss_pred ------HHHHHHHHcCCCCCHH---HHHHHHHHHHHHHHhCChh--HHHHHHHHHHHHHHhc
Q 017109 274 ------ESIRILEENGEGDSMT---CIRRLRYLAQTYVKANRLT--DAETVQRKILHIMESS 324 (377)
Q Consensus 274 ------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~ 324 (377)
+++.+.+...++..+. .......+...+...+... .+...+.++.++....
T Consensus 140 ~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 140 VDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp TTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred HhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 5555544433332222 2222334444444444444 4455777777776554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-12 Score=93.67 Aligned_cols=120 Identities=18% Similarity=0.087 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG----PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.+..+.+.|..+...|+|++|+..|++++++...... ...+....+|.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4667889999999999999999999999999544100 011234569999999999999999999999999998544
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 240 VLGHGNIDYADTM----YHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 240 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
.. +-+|....++ +++|.++..+|++++|+..|++++++.++..+
T Consensus 90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 32 2237778888 99999999999999999999999999887653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=95.98 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=94.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|.....++.+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 44667788999999999999999999999999987 7778899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|++ ..++..+|.++...|++++|+..|++++++.
T Consensus 82 --~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 --DINE---PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp --CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444 4688999999999999999999999999986
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=107.62 Aligned_cols=169 Identities=10% Similarity=0.029 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC---
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN--- 245 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 245 (377)
...+......|+++++.+.+...... .+..+..+..+|..+...|++++|+.+|++++...........
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79 (198)
T ss_dssp --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence 34556666778888888777765543 3445678899999999999999999999999987522100000
Q ss_pred -----hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 246 -----IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 246 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.....++.++|.++...|++++|+.++++++++. +....++..+|.++..+|++++|+.+|++++++
T Consensus 80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0013789999999999999999999999999872 223467889999999999999999999999988
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ-ELFERCLE 361 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 361 (377)
. |....++..++.++...++..++. ..+...+.
T Consensus 152 ~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 N--------PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S--------TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 444778899999999998888777 44444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=98.02 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=104.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC---CC-------CHhHHHHHHHHHHHHHHhcCHhHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG---ER-------DPHVASACNNLAELYRVKKAFDKAEPLY 188 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 188 (377)
....+..+...|..++..|++++|+..|.+++.+...... +. .|....++.++|.++...|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456788999999999999999999999999998654321 11 3556789999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHcC
Q 017109 189 LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA-DTMYHLATVLYLQG 263 (377)
Q Consensus 189 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g 263 (377)
++++.+ +|....+++.+|.++..+|++++|+..|++++.+. |... .+...++.+....+
T Consensus 87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--------PAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHH
Confidence 999998 33446899999999999999999999999999984 5444 44555555554433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=117.76 Aligned_cols=184 Identities=14% Similarity=0.048 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-------hcCHh-------HHHHHHHHHHH-HHHHhcCCCch
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-------KKAFD-------KAEPLYLEAIK-ILQESFGPEDI 204 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~ 204 (377)
.+++..|++++.. .|....++..+|..+.. .|+++ +|...++++++ + .|
T Consensus 255 ~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--------~p 318 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK 318 (530)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--------CS
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--------Cc
Confidence 4778899999987 56667889999999886 79987 78888888876 3 23
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
....++..+|.++...|++++|...|++++++. +.++ ..++..++.++...|++++|...|+++++..
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----- 386 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA----- 386 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-----SSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-----
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-----ccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-----
Confidence 335789999999999999999999999999862 2222 3588899999999999999999999998742
Q ss_pred CCCHHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQT-YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+.. ...+...+.+ +...|++++|..+|+++++.. |....++..++.++...|+.++|..+|++++..
T Consensus 387 ~~~---~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 387 RTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCC---THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred CCc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 111 1223333433 346899999999999999885 333678899999999999999999999999873
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=103.39 Aligned_cols=134 Identities=19% Similarity=0.112 Sum_probs=110.4
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH----------hHHHHHHHHHHHHHHhcCHhHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP----------HVASACNNLAELYRVKKAFDKAEPL 187 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~ 187 (377)
..+..+..+..+|..+...|++++|+..|++++++.... ++.. ....++.++|.++...|++++|+.+
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456677889999999999999999999999999863221 0000 1247899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh
Q 017109 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND 267 (377)
Q Consensus 188 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (377)
+++++.+ . +....++..+|.++...|++++|+.+|++++.+. |....++..++.++...++..+
T Consensus 111 ~~~al~~-----~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 111 ASKVLKI-----D---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHH-----S---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHh-----C---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999998 3 3335789999999999999999999999999884 5567788899999998888877
Q ss_pred HH
Q 017109 268 SE 269 (377)
Q Consensus 268 A~ 269 (377)
+.
T Consensus 175 ~~ 176 (198)
T 2fbn_A 175 KD 176 (198)
T ss_dssp --
T ss_pred HH
Confidence 76
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=104.20 Aligned_cols=140 Identities=17% Similarity=0.141 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
.....++.+|.++...|++++|+..+++++. + . ..++.++|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 67 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD-------P-H---SRICFNIGCMYTILKNMTEAEKAFTRSINRD----- 67 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 3455678999999999999999999998841 1 2 4689999999999999999999999999884
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG--------EGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
|....++.++|.++...|++++|+..++++++..+... ....+....++.++|.++...|++++|+.++
T Consensus 68 ---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 68 ---KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 55678899999999999999999999999998744321 0012345577899999999999999999999
Q ss_pred HHHHHHH
Q 017109 315 RKILHIM 321 (377)
Q Consensus 315 ~~al~~~ 321 (377)
++++++.
T Consensus 145 ~~al~~~ 151 (213)
T 1hh8_A 145 ALATSMK 151 (213)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 9998763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-12 Score=112.55 Aligned_cols=191 Identities=14% Similarity=0.015 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHHHhc
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 199 (377)
..+++.+|.+|...+.++++........+.... .++. +++.+|.+|...| ++++|+.+|+++.+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 457788899999988777766664444333221 1333 8899999999999 999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHcCChhhHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQ----RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV-L--YLQGKENDSEALF 272 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~ 272 (377)
++.. +..++++|.+|... +++++|+.+|+++. +....+++++|.+ + ...+++++|+.+|
T Consensus 209 g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 209 GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3322 45668999999765 79999999999986 1235678899998 4 5689999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH--
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQTYVKAN-----RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-- 345 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-- 345 (377)
+++.+. . ...++.++|.+|. .| ++++|+.+|+++. . ....++..+|.+|..
T Consensus 275 ~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~--------g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 275 DNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G--------REVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T--------TCHHHHHHHHHHHHTTT
T ss_pred HHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C--------CCHHHHHHHHHHHHCCC
Confidence 999863 2 2456789999998 66 9999999999887 1 126889999999987
Q ss_pred --cCCHHHHHHHHHHHHH
Q 017109 346 --TGSLMEAQELFERCLE 361 (377)
Q Consensus 346 --~g~~~~A~~~~~~al~ 361 (377)
..++++|..+|+++.+
T Consensus 333 g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TSSCCHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 4599999999999876
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=95.51 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=95.1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|.....+..+|.++...|++++|+..|++++.. .|++ ..++..+|.++...|++++|+..|++++.+.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 82 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMD--- 82 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---
Confidence 6888999999999999999999999999999987 3333 5789999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|....++.++|.++...|++++|+..+++++++.+.
T Consensus 83 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 83 -----INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp -----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred -----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555678899999999999999999999999998764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-12 Score=91.93 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=106.8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
..+.....+..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 76 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICID-- 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--
Confidence 35677889999999999999999999999999987 2333 5789999999999999999999999999873
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChh
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLT 308 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (377)
|....++..+|.++...|++++|+.+++++++..+ + ...++..++.++...|+++
T Consensus 77 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~---~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 77 ------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-----D---NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----T---CHHHHHHHHHHHHHHTTCC
T ss_pred ------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-----c---chHHHHHHHHHHHHHhcCC
Confidence 45577899999999999999999999999998722 2 2345788999999888763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=94.05 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=105.6
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
...+....++..+|.++...|++++|+.+++++++. .++ ...++..+|.++...|++++|+.++++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 80 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLE- 80 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 345678899999999999999999999999999986 222 35789999999999999999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (377)
+....++..+|.++...|++++|+.+++++++..+ ....++..++.++..+|+
T Consensus 81 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 -------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--------SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--------GGTHHHHHHHHHHHHHTC
T ss_pred -------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHhcC
Confidence 55677899999999999999999999999998732 233467788888887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-14 Score=124.92 Aligned_cols=181 Identities=18% Similarity=0.141 Sum_probs=134.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
+..+..+..+|.++...|++++|+.+|+++++. +|....++.++|.++..+|++++|+..+++++++.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---- 70 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---- 70 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence 455667778899999999999999999999998 33346899999999999999999999999999883
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHhCChhHHHHHHH----
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT--YVKANRLTDAETVQR---- 315 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~---- 315 (377)
|....++.++|.++..+|++++|+..+++++++.+. . ..++..++.+ +..+|++++|++.++
T Consensus 71 ----p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-----~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 138 (477)
T 1wao_1 71 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-----D---KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 138 (477)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----C---TTHHHHHHHHHHHHHHHHHCCC------CCS
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 666789999999999999999999999999987322 1 1245566666 888999999999999
Q ss_pred -------HHHHHHHhccCCCChh---HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhh
Q 017109 316 -------KILHIMESSKGWNSLD---TVIAAEGLALTLQSTGSL--MEAQELFERCLEARKKL 366 (377)
Q Consensus 316 -------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~ 366 (377)
+++++.....++..+. .......+...+...+.. ..+...+.++.++..+.
T Consensus 139 ~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 139 VVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp TTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred hHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 6666555554554443 233444555555555554 44555777777776653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=121.04 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=128.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-------CchhHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-------EDIRIG 207 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 207 (377)
..+++++|+..++.+++. .+..+..+..+|.++...|++++|+..|++++++....... ..+...
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 445677788888777766 67888999999999999999999999999999984332000 012336
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.++.++|.++..+|++++|+.++++++++. |....+++++|.++..+|++++|+..|++++++ .
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~ 381 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------N 381 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 899999999999999999999999999984 666889999999999999999999999999986 2
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHH-HHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAET-VQRKIL 318 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 318 (377)
|....++..++.++...|++++|.. .+.+++
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344678899999999999988764 344443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-12 Score=92.84 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
+..+..+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 445788999999999999999999999999998 6677889999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.|+ ...++..+|.++...|++++|+..+++++.+...
T Consensus 73 ~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 DGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Cch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 333 3578999999999999999999999999998754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-13 Score=117.66 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=115.8
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC-------CCHhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE-------RDPHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
...|..+..+..+|..++..|++++|+..|++++++....... ..+....++.++|.+|..+|++++|+.+++
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4567788999999999999999999999999999974221000 012337899999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHH
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (377)
+++++ . +....+++++|.+|..+|++++|+..|++++++. |....++..++.++...+++++|.
T Consensus 342 ~al~~-----~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 342 KALGL-----D---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHH-----S---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-----C---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 3 3336889999999999999999999999999884 666778999999999999998877
Q ss_pred HH-HHHHH
Q 017109 270 AL-FLESI 276 (377)
Q Consensus 270 ~~-~~~al 276 (377)
.. +.+.+
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 53 34333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=99.62 Aligned_cols=122 Identities=13% Similarity=0.221 Sum_probs=104.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.. |++ ..++..+
T Consensus 21 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHH
Confidence 4578999999999999987 66778899999999999999999999999999982 333 5688999
Q ss_pred HHH-HHHccCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 214 GQF-YLVQRKL--EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 214 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
|.+ +...|++ ++|+.++++++... |....++..+|.++...|++++|+..++++++..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999 8899999 99999999999884 5557789999999999999999999999999873
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=89.00 Aligned_cols=118 Identities=30% Similarity=0.494 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.. .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~ 74 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DP 74 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CC
Confidence 3678899999999999999999999999987 4556778999999999999999999999999987 33
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (377)
+. ..++..+|.++...|++++|..++++++... |....++..++.++...|
T Consensus 75 ~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 75 NN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHC
T ss_pred cc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhcc
Confidence 33 4678999999999999999999999999874 555677888888877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=93.87 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=96.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC---CC-------chhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG---PE-------DIRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
...+..+...|..++..|++++|+..|.+++.+...... +. .+....++.++|.++..+|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 356788999999999999999999999999998655321 11 45567899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+++.+. |....+++.+|.++...|++++|+..|++++++
T Consensus 88 ~al~~~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKRE--------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC--------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999984 667889999999999999999999999999998
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=88.67 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|..+...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 35678899999999999999999999999987 56667889999999999999999999999999986643 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
++.+....++..+|.++...|++++|+.++++++... + .......++.+...
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--------R-TPDVLKKCQQAEKI 124 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------C-CHHHHHHHHHHHHH
Confidence 3344447899999999999999999999999999873 2 13445555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-13 Score=108.36 Aligned_cols=197 Identities=9% Similarity=-0.091 Sum_probs=153.7
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-----
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDS-------GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP----- 162 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----- 162 (377)
.+++.+|...+.+++. .+|..+++|..+ +.++...++..+++..+++++.+.....+....
T Consensus 19 ~~d~~~A~~~F~~a~~-------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 19 PMSEARSLDLFTEITN-------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred CCCHHHHHHHHHHHHH-------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence 4777777777777765 445677889888 899999999999999999998753332211111
Q ss_pred --------hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017109 163 --------HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 163 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 234 (377)
....+...++.++...|++++|.+.+...+.. .|... ..+.+|.++...|++++|+.+++++.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 12456677899999999999999999887763 34444 88999999999999999999998664
Q ss_pred HHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHH
Q 017109 235 KIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT-CIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
... ++. ...+++++|.++...|++++|+.+|+++.. ++..|. ...+.+.+|.++..+|+.++|..
T Consensus 163 ~~~-------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 163 KWP-------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp GCS-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccC-------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 431 232 245899999999999999999999999873 112133 56678899999999999999999
Q ss_pred HHHHHHHH
Q 017109 313 VQRKILHI 320 (377)
Q Consensus 313 ~~~~al~~ 320 (377)
.|++++..
T Consensus 230 ~l~~a~a~ 237 (282)
T 4f3v_A 230 LLEWLQTT 237 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999987
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-12 Score=95.25 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=95.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+.+..+..+..+|.++...|++++|+.+|++++++ . +....++.++|.++...|++++|+.++++++.+.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 75 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----A---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-- 75 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence 45677899999999999999999999999999998 3 3336789999999999999999999999999984
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|....++.++|.++...|++++|+.+|++++++.+.
T Consensus 76 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 76 ------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred ------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 666789999999999999999999999999998654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-12 Score=95.83 Aligned_cols=123 Identities=19% Similarity=0.302 Sum_probs=101.9
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
+...|++++|+..++++++. .|+. ..++..+|.++...|++++|+.++++++... |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH-----CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 35678999999999999987 3333 5789999999999999999999999999986 455778899
Q ss_pred HHHH-HHHcCCh--hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 255 LATV-LYLQGKE--NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 255 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+|.+ +...|++ ++|+.+++++++.. +....++..+|.++...|++++|+.+++++++..
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999 8899999 99999999999872 2224568899999999999999999999999873
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-11 Score=117.69 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
....+|+.+|..+...|++++|+..|.++ .....+..+|.++...|++++|++++..+.+..+.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e--- 1166 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--- 1166 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc---
Confidence 34578999999999999999999999775 22456778999999999999999999998876211
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
. .+...+|.+|.+++++++.. .|.+ + +.. ..+..+|..+...|++++|..+|.++-
T Consensus 1167 --~----~Idt~LafaYAKl~rleele-~fI~---------~---~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~---- 1222 (1630)
T 1xi4_A 1167 --S----YVETELIFALAKTNRLAELE-EFIN---------G---PNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS---- 1222 (1630)
T ss_pred --c----cccHHHHHHHHhhcCHHHHH-HHHh---------C---CCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh----
Confidence 1 11223777777777766432 2211 0 222 234457777777777777777777641
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh-----------------ccCCCChhHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES-----------------SKGWNSLDTVIAAEGLALTL 343 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~~~~la~~~ 343 (377)
.|..+|.++..+|++++|++.++++.....- ..+......+..+..++..|
T Consensus 1223 ------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1223 ------------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY 1290 (1630)
T ss_pred ------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH
Confidence 2556777777777777777777666432110 00000011234556778888
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 017109 344 QSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 344 ~~~g~~~~A~~~~~~al~~ 362 (377)
...|.+++|+.++++++.+
T Consensus 1291 e~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHcCCHHHHHHHHHHHhcc
Confidence 8999999999999888764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-11 Score=85.84 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+++.+|.++...|++++|+..++++++. .|+++....++..+|.++...|++++|+..+++++... ++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 4678999999999999999999999987 55666666899999999999999999999999999874 4444
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
....++..+|.++...|++++|+..++++++.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999987
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-11 Score=87.48 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.++.+|..+...|++++|+..++++++.. ++++....++..+|.++...|++++|+.+++++++. .|+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 46788999999999999999999999862 344555689999999999999999999999999997 55665
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
....++..+|.++..+|++++|+..+++++...
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999999999874
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-11 Score=88.12 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=94.8
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+..+..+..+|.++...|++++|+.++++++.. .|+ ...++..+|.++...|++++|+..+++++.+.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--- 73 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD--- 73 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---
Confidence 3456788999999999999999999999999998 333 35789999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
|....++..+|.++...|++++|+..+++++++.+..
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 5667899999999999999999999999999998774
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-10 Score=110.74 Aligned_cols=219 Identities=15% Similarity=0.074 Sum_probs=122.3
Q ss_pred hcccCCChhhhhhhhhhhhccccccccchhhhHHH------------------------HHHHHHHHHHcCCHHHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRV------------------------FTDSGRDYFLQGKLAEAEKLF 146 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~~~~~g~~~~A~~~~ 146 (377)
.....|.+.++..+..+.+...+.+.+ ++..-.. ...+|.++...|.+++|...|
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~-n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSE-HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccc-cHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHH
Confidence 345689999999988888855432221 1111111 112478888888888888888
Q ss_pred HHHHHHHHhh------CC--------CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 017109 147 LSALQEAKEG------FG--------ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN 212 (377)
Q Consensus 147 ~~al~~~~~~------~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 212 (377)
+++-...... .+ -.......+|..+|.++...|++++|+..|.++ ++ ...+..
T Consensus 1073 kKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD---~say~e 1139 (1630)
T 1xi4_A 1073 RKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------DD---PSSYME 1139 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----------CC---hHHHHH
Confidence 8753211000 00 000112334455555555555555555555443 01 134444
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 213 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
+|.++...|++++|+++|..+.+..+ . ..+...+|.+|.+.+++++ ++.|. + . +.. .
T Consensus 1140 Va~~~~~lGkyEEAIeyL~mArk~~~-------e--~~Idt~LafaYAKl~rlee-le~fI---~------~---~n~-a 1196 (1630)
T 1xi4_A 1140 VVQAANTSGNWEELVKYLQMARKKAR-------E--SYVETELIFALAKTNRLAE-LEEFI---N------G---PNN-A 1196 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcc-------c--ccccHHHHHHHHhhcCHHH-HHHHH---h------C---CCH-H
Confidence 55555555555555555555444320 0 0111124555555555442 22111 0 0 111 2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.+..+|..+...|++++|..+|.++ ..+..++.++...|++++|++.++++...
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 3557999999999999999999884 35677899999999999999999888543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=106.06 Aligned_cols=136 Identities=17% Similarity=0.096 Sum_probs=114.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC--------CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF--------GERDPHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
....+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.++..+|++++|+.++++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345677899999999999999999999999998654310 002567789999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
++++ .+....+++.+|.+|..+|++++|+..+++++++. |....++..++.++...++++++..
T Consensus 299 al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 299 ALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 33346889999999999999999999999999984 5556788889999988888777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-11 Score=85.76 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----Cc
Confidence 3577899999999999999999999999987 5666789999999999999999999999999987 33
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
++ ..++..+|.++...|++++|..+++++++.. |....++..++.+.
T Consensus 70 ~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 DW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME 116 (118)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred cc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHhh
Confidence 33 5789999999999999999999999998763 44455666666553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=86.24 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
...++..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 73 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------ 73 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence 4778899999999999999999999999987 2333 4688999999999999999999999998873
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN 305 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (377)
+....++..+|.++...|++++|+.+++++++.. ++ ...++..++.++...|
T Consensus 74 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 --PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PN---NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHC
T ss_pred --CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHhcc
Confidence 4456788999999999999999999999999862 12 2345677788776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=88.40 Aligned_cols=97 Identities=18% Similarity=0.062 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.++.+|..+...|++++|+..++++++. +|....++..+|.++...|++++|+..+++++++ .|++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~- 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKD- 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-
Confidence 3678899999999999999999999998 7888999999999999999999999999999998 3433
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..++..+|.++...|++++|+..++++++..
T Consensus 85 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 85 --IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999998874
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.30 E-value=8.6e-11 Score=84.99 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+.++++++...... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 34678899999999999999999999999987 3333 5788999999999999999999999999987432 1
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.+.+....++..+|.++...|++++|+.+++++++.
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222333788999999999999999999999999986
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-10 Score=94.82 Aligned_cols=180 Identities=10% Similarity=0.026 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++..+|.++...|++++|+.++.+.+.. ++ ......++..++.++..+|+.+.|.+.+++..+..
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~------- 166 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI------- 166 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 344579999999999999999999998764 22 13567889999999999999999999999987763
Q ss_pred Ch------hHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 245 NI------DYADTMYHLATVLYLQG--KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 245 ~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
+ +.......-+++....| ++.+|...|+++.+.. ++ ......+.+ ++..+|++++|...++.
T Consensus 167 -~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~-~~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 167 -EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PT-WKTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CS-HHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CC-cccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 3 22233333355566656 9999999999975431 11 112222333 89999999999999997
Q ss_pred HHHHHHhccCCC--ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 017109 317 ILHIMESSKGWN--SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 317 al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
+++........+ .|..+.++.+++.+....|+ +|.++++++.+ ..|+||.+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~i 289 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHEHAFI 289 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChHH
Confidence 776643211100 13457888888888888897 88888888887 66777754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-11 Score=102.26 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF--------GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
.+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456788999999999999999999999999655420 002556678999999999999999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 236 IKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
+. |....+++.+|.++...|++++|+..+++++++.+ + ...++..++.++...++.+++.+
T Consensus 302 ~~--------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-----~---~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 ID--------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-----E---DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC--------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 73 66688999999999999999999999999998722 2 23456788888888888877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=87.59 Aligned_cols=99 Identities=11% Similarity=-0.094 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
..++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------- 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------- 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 45688999999999999999999999998 33346889999999999999999999999999984
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
|....++..+|.++...|++++|+..+++++++.+
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 66678999999999999999999999999998643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-11 Score=88.86 Aligned_cols=121 Identities=19% Similarity=0.101 Sum_probs=99.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+..+..+..+|..+...|++++|+..|+++++.. ++++....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--- 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 344567889999999999999999999999999751 222334889999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
.+++ ..++..+|.++...|++++|+.++++++... |....++..++.+.
T Consensus 95 --~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 --DGGD---VKALYRRSQALEKLGRLDQAVLDLQRCVSLE--------PKNKVFQEALRNIS 143 (148)
T ss_dssp --TSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHH
T ss_pred --CccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHH
Confidence 3333 5788999999999999999999999999884 44445555555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-12 Score=107.12 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=89.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHH-----------------HHHHHHHHHHHHhcC
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVA-----------------SACNNLAELYRVKKA 180 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~ 180 (377)
..+..+..+..+|..++..|++++|+..|++++.. .+... .++.++|.++..+|+
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44667888999999999999999999999999987 23322 488999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H
Q 017109 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV-L 259 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~ 259 (377)
+++|+.++++++++ . +....+++++|.+|..+|++++|+..|++++++. |....++..++.+ .
T Consensus 246 ~~~A~~~~~~al~~-----~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 246 YDEAIGHCNIVLTE-----E---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAE 309 (338)
T ss_dssp CHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH
Confidence 99999999999997 3 3336789999999999999999999999999885 5556777888887 4
Q ss_pred HHcCChhhHHHHHHHHHHHHHH
Q 017109 260 YLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~ 281 (377)
...+..+++...|.+++...+.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCC
Confidence 4566778888899988876443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-10 Score=91.82 Aligned_cols=185 Identities=5% Similarity=-0.138 Sum_probs=152.6
Q ss_pred HHcCC-HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc--CHhHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 017109 134 FLQGK-LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK--AFDKAEPLYLEAIKILQESFGPEDIRIGVAF 210 (377)
Q Consensus 134 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 210 (377)
...|. .++|+..+.+++.+ +|....+++..+.+....| ++++++..+.+++.. +|....++
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW 106 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIW 106 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHH
Confidence 34444 46899999999998 8899999999999999999 999999999999987 33335788
Q ss_pred HHHHHHH----HHc---cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHHH
Q 017109 211 HNLGQFY----LVQ---RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN--DSEALFLESIRILEE 281 (377)
Q Consensus 211 ~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 281 (377)
+..+.++ ... +++++++.++.++++.. |....++...+.+....|+++ ++++++.++++.
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--- 175 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--- 175 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence 8888888 666 78999999999999874 777889999999999999999 999999999986
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCC------hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHH-HH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANR------LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA-QE 354 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~ 354 (377)
++....++...+.+....|+ ++++++++++++.. +|....++..++.++...|+..++ ..
T Consensus 176 -----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 176 -----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp -----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred -----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 23334568888888888887 89999999999987 355578888999999988885443 33
Q ss_pred HHHH
Q 017109 355 LFER 358 (377)
Q Consensus 355 ~~~~ 358 (377)
+.++
T Consensus 243 ~~~~ 246 (306)
T 3dra_A 243 FSLQ 246 (306)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-11 Score=87.61 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=93.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+.....+..+|..+...|++++|+.+++++++. .++++....++..+|.++...|++++|+.++++++...
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 95 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--- 95 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 3456788999999999999999999999999986 44454457899999999999999999999999999884
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++..+|.++...|++++|+.++++++++
T Consensus 96 -----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 -----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455788999999999999999999999999987
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=81.18 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+..+..+|.++...|++++|+..+++++.. .|++ ..++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------ 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------
Confidence 3567889999999999999999999999987 3333 5789999999999999999999999999884
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++..+|.++...|++++|..+++++++.
T Consensus 69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 555778999999999999999999999999875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-12 Score=108.55 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..++..+...|++++|+.+++.+++. .+. +.+...++.+|...|++.++.++++. |+
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~--------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn-- 121 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK--------ARE-SYVETELIFALAKTNRLAELEEFING----------PN-- 121 (449)
T ss_dssp -------------------------------------------------------CHHHHTTTTTC----------C---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc--
Confidence 3444445555555555555555555432 111 23334444555555555554444321 11
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
..++..+|..+...|+|++|..+|.++ ..+..+|.++...|++++|++.++++.
T Consensus 122 --~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------- 175 (449)
T 1b89_A 122 --NAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN-------- 175 (449)
T ss_dssp -----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC--------
Confidence 125555555555555555555555543 124455555555555555555555551
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. ..+|...+.++...|+++.|..+..... .+|+. ...++.+|.+.|++++|+.++++++.
T Consensus 176 --~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 176 --S---TRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADE---LEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp --C---HHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred --C---chhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 0 1234444555555555555533333200 12221 22455666666666666666666654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.3e-11 Score=84.56 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=75.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLG 214 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 214 (377)
..|++++|+..|+++++. +.++|....++..+|.++...|++++|+.+++++++. .|++ ..++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNH---QALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---hHHHHHHH
Confidence 468999999999999974 1224888999999999999999999999999999998 3444 57899999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH
Q 017109 215 QFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999885
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=91.53 Aligned_cols=223 Identities=6% Similarity=-0.055 Sum_probs=165.5
Q ss_pred CCChh-hhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhhCCCCCHh
Q 017109 95 QNDTE-GENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGK----------LAEAEKLFLSALQEAKEGFGERDPH 163 (377)
Q Consensus 95 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~ 163 (377)
.|++. +|...+..++. .+|....+++..+.++...|. +++++.++..++.. +|.
T Consensus 42 ~~e~s~eaL~~t~~~L~-------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PK 106 (331)
T 3dss_A 42 AGELDESVLELTSQILG-------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK 106 (331)
T ss_dssp TTCCSHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred cCCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCC
Confidence 45554 45555555553 345566888888888877765 67888888888877 788
Q ss_pred HHHHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHh
Q 017109 164 VASACNNLAELYRVKKA--FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK-LEDACTYYERALKIKGRV 240 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 240 (377)
...++...+.+....|+ +++++.++.++++. ++....++...+.+....|. ++++++++.++++..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--- 175 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--- 175 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---
Confidence 89999999999999994 89999999999997 44446889999999999998 699999999999873
Q ss_pred cCCCChhHHHHHHHHHHHHHHc--------------CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh--
Q 017109 241 LGHGNIDYADTMYHLATVLYLQ--------------GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA-- 304 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 304 (377)
|....+++..+.++... +.++++++++.+++...+ ....+++.+..++...
T Consensus 176 -----p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P--------~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 176 -----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--------NDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp -----SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHSSSC
T ss_pred -----CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhccC
Confidence 77778899999888876 457899999999998722 2233454444444333
Q ss_pred ---------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH
Q 017109 305 ---------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ---STGSLMEAQELFERCLEARK 364 (377)
Q Consensus 305 ---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~ 364 (377)
+.++++++++++++++. |+...++..++.+.. ..|..++...++.+.+++.+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 45778888888888874 333444444444332 46778889999998887643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=101.91 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+..+..+|..+...|++++|+..|++++.. .|+ ...++.++|.++..+|++++|+..+++++++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------ 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD------ 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------
Confidence 3567899999999999999999999999997 333 35789999999999999999999999999873
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
|....+++.+|.++...|++++|+..+++++++.+...
T Consensus 69 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 66678999999999999999999999999999987653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=103.32 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCC--------hhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG-HGN--------IDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
..+..+..+|..+...|++++|+..|++++........ ... .....++.++|.++...|++++|+.+++++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34667889999999999999999999999987521100 000 000148899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH-HHHcCCHHHHHH
Q 017109 276 IRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT-LQSTGSLMEAQE 354 (377)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~ 354 (377)
+++. +....+++++|.+|..+|++++|+..|++++++. |....++..++.+ ....+..+++..
T Consensus 257 l~~~--------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 257 LTEE--------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9872 2335678999999999999999999999998874 3346677778887 445677788889
Q ss_pred HHHHHHHHHHh
Q 017109 355 LFERCLEARKK 365 (377)
Q Consensus 355 ~~~~al~~~~~ 365 (377)
.|.+++...+.
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 99998875443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-09 Score=89.88 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=150.8
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC----------HhHHHHHHHHHHHHHHHhcCC
Q 017109 133 YFLQGKLA-EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA----------FDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 133 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 201 (377)
....|+++ +|+..+.+++.+ +|....+++..+.+....+. +++++.++..++..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------- 103 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------- 103 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-------
Confidence 34567776 799999999977 78888899999998887776 57788888888776
Q ss_pred CchhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRK--LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK-ENDSEALFLESIRI 278 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 278 (377)
+|....++...+.++...|+ +++++.++.++++.. |....++...+.+....|. ++++++++.++++.
T Consensus 104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 34446899999999999994 899999999999873 7778899999999999998 59999999999986
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHh--------------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKA--------------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ 344 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 344 (377)
++....++...+.++... +.++++++++.+++... |....++..+.-++.
T Consensus 175 --------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 175 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLG 238 (331)
T ss_dssp --------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 233345677888888776 56889999999999873 444666765554554
Q ss_pred Hc-----------CCHHHHHHHHHHHHHHHH
Q 017109 345 ST-----------GSLMEAQELFERCLEARK 364 (377)
Q Consensus 345 ~~-----------g~~~~A~~~~~~al~~~~ 364 (377)
.. +.++++++++++++++.+
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 44 356788888888887543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-09 Score=90.30 Aligned_cols=180 Identities=6% Similarity=-0.023 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC-
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE- 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 202 (377)
..+..+|.++...|++++|+.++.+++.. ...+....++..++.++..+|+.+.|.+.+++..+. .++
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~ 169 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDT 169 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cccc
Confidence 34568999999999999999999999753 111478889999999999999999999999998776 221
Q ss_pred --chhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 203 --DIRIGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNID--YADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 203 --~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
......+...-|.+....| ++.+|..+|+++.+.. |. ....+.+ ++..+|++++|...++.++
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------PTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------CCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 0122334444455566666 9999999999975542 32 2233333 8999999999999999887
Q ss_pred HHHHHcCCCC--CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 277 RILEENGEGD--SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 277 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
+..+.....+ .+....++.+++.+...+|+ +|.+++.++.+. .++||..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-----~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-----DHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-----TCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-----CCCChHH
Confidence 7765532110 12345667788888888897 888888888766 3556643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-11 Score=84.09 Aligned_cols=100 Identities=16% Similarity=0.021 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
..++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~ 72 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IED 72 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----Ccc
Confidence 456788999999999999999999999987 5566788999999999999999999999999987 333
Q ss_pred chhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKI 236 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 236 (377)
.....++..+|.++... |++++|+.++++++..
T Consensus 73 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 73 -EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred -cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 11357899999999999 9999999999998765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-11 Score=83.48 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=76.8
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
.+|++++|+.+|+++++. ++++|....++.++|.++..+|++++|+.+++++++.. |....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHH
Confidence 468999999999999986 33357778999999999999999999999999999984 56678999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHH
Q 017109 257 TVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-11 Score=104.74 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+|..+|..+...|++++|++.|.++- ....+..++..+...|++++|+.+++.+.+..+ +
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~------~ 93 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR------E 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc------c
Confidence 589999999999999999999997642 123667788888999999999999998887411 1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
..+...++.+|.+.|+++++.++++. |. ..++..+|..+...|++++|..+|.++
T Consensus 94 ---~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 94 ---SYVETELIFALAKTNRLAELEEFING-------------PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred ---chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 35677899999999999999877742 22 238999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
..+..+|.++..+|++++|++.++++. + +.++...+.++...|+++.|.
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHH
Confidence 127889999999999999999999981 1 577888889999999888886
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.7e-11 Score=83.38 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
....++..+|.++...|++++|+.+++++++. .+.. ..++..+|.++...|++++|+.+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 70 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVI----- 70 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 34567788999999999999999999999987 3333 4688999999999999999999999999874
Q ss_pred CCChh--HHHHHHHHHHHHHHc-CChhhHHHHHHHHHHH
Q 017109 243 HGNID--YADTMYHLATVLYLQ-GKENDSEALFLESIRI 278 (377)
Q Consensus 243 ~~~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 278 (377)
+. ...++..+|.++... |++++|+.++++++..
T Consensus 71 ---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 ---EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ---CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ---cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 44 577899999999999 9999999999998865
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-09 Score=89.68 Aligned_cols=224 Identities=11% Similarity=-0.017 Sum_probs=166.5
Q ss_pred hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH
Q 017109 99 EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV 177 (377)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 177 (377)
++|...+.+++. .+|....+++..+.++...| .+++++.++.+++.. +|....++...+.++..
T Consensus 71 e~AL~lt~~~L~-------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 71 ERALELTEIIVR-------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHH
Confidence 455666665554 34556688999999999999 599999999999976 78888999999999998
Q ss_pred h-c-CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHHHHHhcCCCChh
Q 017109 178 K-K-AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE--------DACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 178 ~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
. + +++++++++.++++. ++....++...+.+....|.++ ++++++.++++.. +.
T Consensus 136 l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------p~ 199 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------GR 199 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------TT
T ss_pred hcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------CC
Confidence 8 7 889999999998875 4444678999999999888887 9999999998873 77
Q ss_pred HHHHHHHHHHHHHHcCC-------hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH-----------
Q 017109 248 YADTMYHLATVLYLQGK-------ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD----------- 309 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----------- 309 (377)
...+++..+.++...++ ++++++++.+++.+ .|....++..+..++...|+...
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 78899999999999887 68899999998886 22334557777778877776511
Q ss_pred -HHH-HHHHHHHHHHhccCC-----CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 310 -AET-VQRKILHIMESSKGW-----NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 310 -A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.+. .+....+.+....+. ..+....++..++.+|...|+.++|.++++...+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 000 011222222222221 1134577899999999999999999999988654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=99.03 Aligned_cols=179 Identities=11% Similarity=-0.025 Sum_probs=149.9
Q ss_pred HHHcCCH-HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC----------HhHHHHHHHHHHHHHHHhcCC
Q 017109 133 YFLQGKL-AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA----------FDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 133 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 201 (377)
....|++ ++|+..+.+++.. +|....+++..+.++...|+ ++++++.+.++++.
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------- 102 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------- 102 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-------
Confidence 3445544 5789999999998 88999999999999999998 99999999999987
Q ss_pred CchhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-KENDSEALFLESIRI 278 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 278 (377)
+|....+|...+.++...| +++++++++.++++.. +....++...+.+....| .++++++++.++++.
T Consensus 103 -~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 103 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp -CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred -CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4444689999999999999 7799999999999984 677889999999999999 899999999999875
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHh--------------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKA--------------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ 344 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 344 (377)
++....+|...+.++... +.+++|++++.+++.+. |....++..++.++.
T Consensus 174 --------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--------P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLG 237 (567)
T ss_dssp --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--------SSCSHHHHHHHHHHS
T ss_pred --------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--------CCCccHHHHHHHHHh
Confidence 333446788888888875 56789999999999873 444678888888988
Q ss_pred HcCCHHH
Q 017109 345 STGSLME 351 (377)
Q Consensus 345 ~~g~~~~ 351 (377)
..+++++
T Consensus 238 ~~~~~~~ 244 (567)
T 1dce_A 238 RAEPHDV 244 (567)
T ss_dssp CCCCCSC
T ss_pred cCCCccc
Confidence 8887554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-09 Score=87.71 Aligned_cols=189 Identities=12% Similarity=-0.067 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHHhc
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 199 (377)
....++..+..+....+..++|+..+.+++.+ +|....+++..+.+....| .+++++..+.+++..
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----- 118 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----- 118 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence 34455666666666677778999999999998 8888999999999999999 599999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh--------hHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQ-R-KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN--------DSE 269 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~ 269 (377)
+|....+++..+.++... + ++++++.++.++++. ++....++...+.+....|.++ +++
T Consensus 119 ---nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 119 ---NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp ---TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 344468899999999988 7 899999999998865 3667789999999999888888 899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC-------hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR-------LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
+++.++++. ++....++...+.+....++ ++++++++++++.+ +|....++..+..+
T Consensus 188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGF 251 (349)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999999886 23344678889999888887 68899999999887 35557788888888
Q ss_pred HHHcCCH
Q 017109 343 LQSTGSL 349 (377)
Q Consensus 343 ~~~~g~~ 349 (377)
+...|+.
T Consensus 252 l~~~~~~ 258 (349)
T 3q7a_A 252 LKHFSLP 258 (349)
T ss_dssp HHHTTCC
T ss_pred HHhcCCC
Confidence 8877764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-10 Score=81.89 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHh----------HHHHHHHHHHHHHHHhcCCCc
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFD----------KAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+.+.+++|+..+++++++ +|..+.++.++|.++...++++ +|+..|++++++ +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3557889999999999998 8889999999999999998864 999999999998 4
Q ss_pred hhHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQR-----------KLEDACTYYERALKIK 237 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~ 237 (377)
|....+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 445689999999999885 8999999999999994
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-09 Score=70.59 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.+....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3456788999999999999999999999999987 5666788999999999999999999999999997
Q ss_pred cCCCchhHHHHHHHHHHHHHHcc
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQR 221 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g 221 (377)
.|++ ..++.++|.++...|
T Consensus 73 -~p~~---~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -DPNN---AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -CTTC---HHHHHHHHHHHHHHC
T ss_pred -CCCC---HHHHHHHHHHHHhcC
Confidence 3333 567888998887654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-10 Score=79.82 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+..+|..+...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++ .|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC
Confidence 3577899999999999999999999999998 6677889999999999999999999999999987 33
Q ss_pred Cc---hhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 202 ED---IRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 202 ~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
++ .....++..+|.++...|++++|+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 32 2236788899999999998877765544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-09 Score=69.69 Aligned_cols=87 Identities=29% Similarity=0.468 Sum_probs=74.3
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+....++..+|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.+++++++..
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 73 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--- 73 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---
Confidence 3456788999999999999999999999999987 3333 5789999999999999999999999999884
Q ss_pred cCCCChhHHHHHHHHHHHHHHcC
Q 017109 241 LGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g 263 (377)
|....++.++|.++...|
T Consensus 74 -----p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 -----PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----TTCHHHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHHHHHHhcC
Confidence 555778889999887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-08 Score=89.13 Aligned_cols=217 Identities=11% Similarity=0.086 Sum_probs=163.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAE-KLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
|....+|...+......|+.++|. ..|++|+.. .|.....+...+......|++++|...|++++......
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344678888899999999999997 999999976 45556778889999999999999999999999864211
Q ss_pred c------CCCc--------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-
Q 017109 199 F------GPED--------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG- 263 (377)
Q Consensus 199 ~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g- 263 (377)
. .|.. .....++...+....+.|..+.|...|.+|++... +....++...+.+....+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-------~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-------LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-------GSCTHHHHHHHHHHHTTTS
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHhCC
Confidence 0 0110 12345778888888889999999999999987621 112344556666666655
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHH
Q 017109 264 KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTL 343 (377)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 343 (377)
+++.|...|+++++.++. .+. .+...+......|+.+.|..+|++++..... .......+......-
T Consensus 485 d~e~Ar~ife~~Lk~~p~-----~~~---~w~~y~~fe~~~~~~~~AR~lferal~~~~~-----~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFAT-----DGE---YINKYLDFLIYVNEESQVKSLFESSIDKISD-----SHLLKMIFQKVIFFE 551 (679)
T ss_dssp CCHHHHHHHHHHHHHHTT-----CHH---HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS-----TTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC-----chH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHH
Confidence 489999999999997542 232 3456677778889999999999999875321 113467788888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q 017109 344 QSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 344 ~~~g~~~~A~~~~~~al~~~~ 364 (377)
...|+.+.+....+++.+..+
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHST
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 899999999999999988654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-10 Score=78.87 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+.++..+|.++...|++++|+..++++++. .|++ ..++.++|.++..+|++++|+..+++++++.... .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA--E 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST--T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--c
Confidence 3567899999999999999999999999998 3333 5789999999999999999999999999874110 0
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+......++..+|.++...|++++|+..+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 0011377889999999999998888765543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-09 Score=77.87 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=76.2
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHHhcCCCC
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL----------EDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+.+.|++|+..+++++++ +|....++.++|.++...+++ ++|+..|++++++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------- 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------
Confidence 3567899999999999998 344468999999999999875 59999999999994
Q ss_pred hhHHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQG-----------KENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 278 (377)
|....+++++|.+|..+| ++++|+.+|++++++
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 778899999999999875 899999999999998
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-09 Score=95.32 Aligned_cols=175 Identities=7% Similarity=-0.067 Sum_probs=142.9
Q ss_pred CCh-hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhhCCCCCHhH
Q 017109 96 NDT-EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGK----------LAEAEKLFLSALQEAKEGFGERDPHV 164 (377)
Q Consensus 96 ~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~ 164 (377)
|++ ++|...+.+++. ..|....+|+..+.++...|+ +++++.++.++++. +|..
T Consensus 42 ~~~~eeal~~~~~~l~-------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~ 106 (567)
T 1dce_A 42 GELDESVLELTSQILG-------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKS 106 (567)
T ss_dssp TCCSHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred CCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCC
Confidence 444 344555555554 345667899999999999988 99999999999987 8888
Q ss_pred HHHHHHHHHHHHHhc--CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhc
Q 017109 165 ASACNNLAELYRVKK--AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-KLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 165 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 241 (377)
..++...+.++...| +++++++++.++++. ++....+|...+.+....| .++++++++.++++..
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---- 174 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---- 174 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT----
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----
Confidence 999999999999999 779999999999998 3444689999999999999 8999999999998763
Q ss_pred CCCChhHHHHHHHHHHHHHHc--------------CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCh
Q 017109 242 GHGNIDYADTMYHLATVLYLQ--------------GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL 307 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (377)
+....+++..+.++... +.++++++++.+++.+.+ ....+|..++.++...+++
T Consensus 175 ----p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P--------~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 175 ----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--------NDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--------SCSHHHHHHHHHHSCCCCC
T ss_pred ----CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCCc
Confidence 66778999999998875 557899999999998732 2235678888888888875
Q ss_pred hH
Q 017109 308 TD 309 (377)
Q Consensus 308 ~~ 309 (377)
++
T Consensus 243 ~~ 244 (567)
T 1dce_A 243 DV 244 (567)
T ss_dssp SC
T ss_pred cc
Confidence 55
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=71.97 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 141 EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 141 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
+|+..|+++++. .|....++..+|.++...|++++|+.+++++++. .| ....++..+|.++...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DP---TYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CC---CcHHHHHHHHHHHHHc
Confidence 577888888865 5667789999999999999999999999999997 33 3357899999999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKIKG 238 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~ 238 (377)
|++++|+..+++++++..
T Consensus 67 g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-08 Score=68.11 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|....+++.+|.++...|++++|+..|+++++. +|....++..+|.+|...|++++|+..+++++++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3556688999999999999999999999999998 67777899999999999999999999999999986654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-08 Score=71.09 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 182 DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 182 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
++|+..++++++. .|++ ..++..+|.++...|++++|+.++++++... |....++..+|.++..
T Consensus 2 ~~a~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ-----GTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT-----TCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHH
Confidence 3577888888875 3333 5789999999999999999999999999884 5667789999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcC
Q 017109 262 QGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~ 283 (377)
.|++++|+..+++++++.+...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999999876653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-07 Score=85.05 Aligned_cols=192 Identities=13% Similarity=0.000 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAE-PLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 218 (377)
......|++++.. .|.....+...+......|+.++|. ..+++++.. .|.. ...+...+....
T Consensus 326 ~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-----~P~s---~~Lwl~~a~~ee 389 (679)
T 4e6h_A 326 ARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-----IPNS---AVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHH
Confidence 4456789999887 6777889999999999999999997 999999876 2323 456788899999
Q ss_pred HccCHHHHHHHHHHHHHHHHHhc------CCCC--------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 219 VQRKLEDACTYYERALKIKGRVL------GHGN--------IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
..|++++|...|++++....... .+.+ .....++...+.+..+.|..+.|...|.+|++.....
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-- 467 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-- 467 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS--
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--
Confidence 99999999999999998642110 0110 1244578888888888999999999999998752111
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKAN-RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. ..++...|.+....| +++.|...|+.+++.+.. ....+...+......|+.+.|..+|++++..
T Consensus 468 --~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--------~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 468 --T---PDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--------DGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp --C---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred --C---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 1 123445566665554 489999999999998632 2455667778888899999999999999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-08 Score=68.30 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=62.0
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+|....++..+|.++...|++++|+.+++++++. .|+. ..++..+|.+|...|++++|+..+++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4666789999999999999999999999999998 3333 468999999999999999999999999998754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-08 Score=71.88 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
+++++|+.+|+++.+. . ++. +. +|.+|...+..++|+.+|+++.+. .+ ..+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~------g-~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL------N-EMF---GC--LSLVSNSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT------T-CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC------C-CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------CC---HHHHHHHHHH
Confidence 4788999999999875 2 222 22 999999999999999999999885 23 4789999999
Q ss_pred HHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHH
Q 017109 217 YLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRI 278 (377)
Q Consensus 217 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 278 (377)
|.. .+++++|+.+|+++.+. ....++.++|.+|.. .+++++|+.+++++.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999764 235788999999999 89999999999999875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-08 Score=70.89 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=92.4
Q ss_pred cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017109 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV 258 (377)
Q Consensus 179 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 258 (377)
+++++|+.+|+++.+. + ++ .+. +|.+|...+..++|+.+|+++.+. ....+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EM---FGC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CT---THH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CH---hhh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 5789999999999875 2 22 122 999999999999999999999875 235789999999
Q ss_pred HHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q 017109 259 LYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHI 320 (377)
Q Consensus 259 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 320 (377)
|.. .+++++|+.+|+++.+. .+ ..++.++|.+|.. .+++++|+.+|+++.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 998 89999999999999874 12 3567899999999 89999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=64.60 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHH-HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVAS-ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+..|..+...|++++|+..++++++. .|.... ++..+|.++...|++++|+.++++++++ .|+++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~- 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSP- 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTST-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcH-
Confidence 46788999999999999999999987 566677 9999999999999999999999999988 44443
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.++.+ +.+.++...|+++....
T Consensus 70 --~~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 70 --ALQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp --HHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred --HHHHH--------HHHHHHHHHHHHHhccC
Confidence 22221 66777778777776664
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=65.02 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV-AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
...|.++...|++++|+..++++++. .|++ .. ++..+|.++...|++++|+.+|++++++. |.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-----EPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--------PD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CC
Confidence 56788999999999999999999987 3333 46 88999999999999999999999999884 33
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
...++.. +.+.+++..|+++....+.
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 3333322 5566777777777666543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00015 Score=61.95 Aligned_cols=190 Identities=9% Similarity=-0.035 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
.+...+|..|...|++++-.+++.......... .....+.....+-..+.. -+..+.-++.+..+++-++..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 678899999999999999998888776554332 112344445555555443 355566677777777766542
Q ss_pred chhHHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 203 DIRIGV--AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 203 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
...... .-..+|..|...|+|.+|...+.+..+-+++. ++......++..-..+|...+++.++...+.++.....
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 222222 44589999999999999999999999888664 23467788899999999999999999999999998876
Q ss_pred HcCCCCCHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHh
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 323 (377)
... .++...+.....-|.++. ..++|..|..+|-++.+-+..
T Consensus 171 ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 171 AIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred cCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 653 234455666777788899 899999999999998766543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.48 E-value=7.1e-06 Score=68.84 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH----hHHHHHHHHHHHHHHHh
Q 017109 126 FTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF----DKAEPLYLEAIKILQES 198 (377)
Q Consensus 126 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~ 198 (377)
++..|..+...++ +.+|+.+|++|+++ +|..+.++..++.+|...... .....-+.+++.....
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a- 269 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT- 269 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh-
Confidence 4455666666544 58999999999998 888888888777777532211 1222223333332211
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.+..+..+.++..++..+...|++++|+..+++++.+. +. ..++..+|.++...|++++|++.|++|+.+
T Consensus 270 -~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 -LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp -CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12234446788888998999999999999999999993 32 457788999999999999999999999998
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.2e-06 Score=56.22 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.-.+.+|..++..|+|..|+.+|++|++....... .......++..+|.++..+|++++|+.++++++++ .|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Confidence 455789999999999999999999999988654311 12456789999999999999999999999999998 455
Q ss_pred chhHHHHHHHHH
Q 017109 203 DIRIGVAFHNLG 214 (377)
Q Consensus 203 ~~~~~~~~~~la 214 (377)
++ .+..+++
T Consensus 79 ~~---~~~~n~~ 87 (104)
T 2v5f_A 79 HQ---RANGNLK 87 (104)
T ss_dssp CH---HHHHHHH
T ss_pred CH---HHHhhHH
Confidence 54 4455554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=58.30 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+.-++.+|..++..|+|..|+.++++|++....... .......++..+|.++..+|++++|+.++++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------- 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------- 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Confidence 456789999999999999999999999998654311 123456889999999999999999999999999884
Q ss_pred ChhHHHHHHHHH
Q 017109 245 NIDYADTMYHLA 256 (377)
Q Consensus 245 ~~~~~~~~~~la 256 (377)
|....+..+++
T Consensus 77 -P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 -PEHQRANGNLK 87 (104)
T ss_dssp -TTCHHHHHHHH
T ss_pred -CCCHHHHhhHH
Confidence 44455566655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7e-06 Score=73.41 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=121.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---------CHhHHHHHHHHHHHHHH
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---------AFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~ 196 (377)
+..+-..+.+.|++++|+.+|++..+. +-.| ...+++.+-.++...+ ..++|.+.+++....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN------GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 445557788999999999999998764 2222 2345566656665443 367788887776543
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+- .| ...+|+.+...|.+.|++++|..++++..+. +- .| ...+|+.+-..|.+.|+.++|.+++++..
T Consensus 100 ---G~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 100 ---KV-VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QP-RLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp ---TC-CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-ccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 21 11 1468899999999999999999999987653 11 12 35678888899999999999999999876
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+. + -.| ...++..+-..+.+.|+.++|.+++++..+.
T Consensus 168 ~~----G--~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 168 ES----E--VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HT----T--CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hc----C--CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 53 1 111 1245778889999999999999999987654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.46 E-value=8.8e-05 Score=63.29 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
-.+...||.+|...|++++-.+++.......... .....+.....+-..+.. -+..+.-.+...++++.++..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--- 92 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--- 92 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence 3567899999999999999988888776654443 233344444445444443 355666777888888877532
Q ss_pred CChhHHH--HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 244 GNIDYAD--TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 244 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
...... .-..+|.+|...|+|.+|.+.+.+..+-++... +......++..-..+|...+++.++...+.++....
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD--DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 122222 445899999999999999999999998887754 567788888889999999999999999999999887
Q ss_pred HhccCCCChh-HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHh
Q 017109 322 ESSKGWNSLD-TVIAAEGLALTLQ-STGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 322 ~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 365 (377)
.... .+|. .+.....-|.++. ..++|.+|..+|-++.+.+.+
T Consensus 170 ~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 170 NAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred ccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 6542 3343 4556666778888 899999999999988765543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-05 Score=71.93 Aligned_cols=167 Identities=11% Similarity=0.018 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHHH
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR---------KLEDACTYYERALKIK 237 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~ 237 (377)
.+..+-..+.+.|+.++|.+.|++..+. |- .|. ..+|+.+-..+...+ ..++|.+.|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv-~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GV-QLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TC-CCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3455667888999999999999998764 21 111 346666666665443 367788888776543
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
+- .| ...+++.+...+.+.|++++|..++++..+. +. .| ...++..+-..|.+.|+.++|.+++++.
T Consensus 100 ----G~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~--~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 ----KV-VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GI--QP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ----TC-CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 12 3467888999999999999999999987652 11 11 2345778888999999999999999987
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 318 LHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.+. |. .| ...++..+-..+.+.|+.++|..++++..+
T Consensus 167 ~~~-----G~-~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 167 VES-----EV-VP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHT-----TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhc-----CC-CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 643 11 12 256888899999999999999999998755
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-06 Score=55.84 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 120 TSKWRVFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
|....++..+|.+++..++ .++|...++++++. +|....++..+|..++..|+|++|+.+++++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445788889999877666 79999999999998 8999999999999999999999999999999886
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-05 Score=64.36 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=91.7
Q ss_pred HHHHHHHHHhc---CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHhc
Q 017109 169 NNLAELYRVKK---AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR----KLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 169 ~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~ 241 (377)
+..|..+...+ ++.+|+.+|++++++ +|..+.++..++.+|.... .......-+.+++......
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~- 270 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL- 270 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-
Confidence 34455555444 458999999999998 4555566666666664221 1122223333444422111
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...+..+.++..++..+...|++++|+..+++++.+ +. . ...+..+|.++...|++++|++.|.+|+.+
T Consensus 271 -~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n~-s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 -PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------EM-S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp -GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CC-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------CC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 122555778888888888899999999999999998 21 1 345678999999999999999999999988
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00011 Score=59.10 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=82.1
Q ss_pred CHhHHHHHHHHHHHHHH---h--c------CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-----cCHH
Q 017109 161 DPHVASACNNLAELYRV---K--K------AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ-----RKLE 224 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~ 224 (377)
++..+..++..|.+... . | ....|...+++++++ .| ....+.++..+|.+|... |+.+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-----DP-~~~~GsA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-----WP-SYQEGAVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-----CT-THHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-----CC-CcccCHHHHHHHHHHHhCCCccCCCHH
Confidence 34556666666665543 1 2 346788888888888 22 223567999999999995 9999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHH
Q 017109 225 DACTYYERALKIKGRVLGHGNIDY-ADTMYHLATVLYL-QGKENDSEALFLESIRILEE 281 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 281 (377)
+|..+|++++++. |.. ..+++..|..+.. +|++++|..++++++..-..
T Consensus 222 kA~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 222 KAHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999999995 543 6788889999888 59999999999999986444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.5e-05 Score=54.13 Aligned_cols=126 Identities=15% Similarity=-0.005 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC--
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-- 201 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-- 201 (377)
++..-...+...|.|+.|+.....++.+.+.....-.| ....++..+|.+++..|+|..|...|++++...+.....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35556677889999999999999998886543111122 457899999999999999999999999999987643111
Q ss_pred ---------------CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 202 ---------------EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 202 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
+.+....+.+.++.||...|++++|+..++..-.. ...+.+...||.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---------~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---------QRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---------GCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---------hcCHHHHHHHHHHh
Confidence 01123467889999999999999999987653211 33455666667665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00017 Score=52.54 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG-DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
..++..-...+...|.|+.|+.....++.+....... .......++..+|..++..|+|..|...|++++...+.....
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456667778889999999999999999887664422 234567788899999999999999999999999887643211
Q ss_pred C-----------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 328 N-----------------SLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 328 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
. .+...++.+.++.||.+.|++++|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 122347889999999999999999998764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=50.95 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHHHHHhcC---HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVKKA---FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|..+..+..+|.+++..++ .++|..+++++++. +|....+...+|..++..|+|++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456788889999887666 79999999999998 44446899999999999999999999999998763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0006 Score=54.97 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 223 LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ-----GKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
..+|...+++++++- + ......++..+|.+|... |+.++|..+|++++++.+. .....+...
T Consensus 179 l~~A~a~lerAleLD-----P-~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-------~~id~~v~Y 245 (301)
T 3u64_A 179 VHAAVMMLERACDLW-----P-SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-------HDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHC-----T-THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-------TCSHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----C-CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-------CCchHHHHH
Confidence 567888888888884 1 123577999999999995 9999999999999998321 113456778
Q ss_pred HHHHHH-hCChhHHHHHHHHHHHHH
Q 017109 298 AQTYVK-ANRLTDAETVQRKILHIM 321 (377)
Q Consensus 298 a~~~~~-~g~~~~A~~~~~~al~~~ 321 (377)
|..+.. +|++++|.+++++++..-
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 888877 599999999999999863
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00034 Score=50.60 Aligned_cols=84 Identities=19% Similarity=0.033 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHHHhcCCCch-hHHHHHHHHH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKILQESFGPEDI-RIGVAFHNLG 214 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la 214 (377)
...+.+.|.+.++. .+....+.+++|.++...+ +.++++..++..++. +.| ....+++++|
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence 34455666665542 3456789999999999988 677999999998886 223 4568999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH
Q 017109 215 QFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..+.+.|+|++|..++++++++-
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHhcC
Confidence 99999999999999999999994
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00018 Score=52.04 Aligned_cols=67 Identities=10% Similarity=-0.063 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQG---KLAEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
...++.+.+|.++...+ +.++++.+++..++. +.| ...++++++|..++..|+|++|..++++++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35688999999999988 677999999999886 125 66899999999999999999999999999998
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0014 Score=58.50 Aligned_cols=188 Identities=12% Similarity=0.012 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc---------CC---------
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF---------GP--------- 201 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~--------- 201 (377)
......|++++.. .|.....+...+..+...|+.++|...+++++.. .... ..
T Consensus 196 ~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHH
Confidence 4456788888876 4555788888899999999999999999999976 2110 00
Q ss_pred --------------CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-Chh
Q 017109 202 --------------EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-KEN 266 (377)
Q Consensus 202 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~ 266 (377)
.......++...+......+..+.|...|.++ .. + +.....+...|.+....+ +.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~--~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------E--GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------S--CCCHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------C--CCChHHHHHHHHHHHHHCCChH
Confidence 00001123333344444556677777777766 21 1 112334444455554444 588
Q ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 267 DSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
.|...++.+++.+ ++.+.. +...+......|+.+.|...|+++.. ....+......-...
T Consensus 338 ~ar~ife~al~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~~k------------~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRLEK------------TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHSCC------------BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH------------HHHHHHHHHHHHHHC
Confidence 8888888887753 123332 33345666677888887777777610 145566666666777
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 017109 347 GSLMEAQELFERCLEARKK 365 (377)
Q Consensus 347 g~~~~A~~~~~~al~~~~~ 365 (377)
|+.+.+...+++++.....
T Consensus 398 G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 398 GSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999886653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0028 Score=55.64 Aligned_cols=219 Identities=10% Similarity=0.012 Sum_probs=136.6
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|++.+|....+ .++.....+.+.+...++...+...+...|+++...+.+.-... ..+. .+...........-
T Consensus 29 ~~~~~~a~e~ll-~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~ 102 (445)
T 4b4t_P 29 QNDCNSALDQLL-VLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVME 102 (445)
T ss_dssp HHHHHHHHHHHH-HHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHH
Confidence 356666655443 34444445567777888999999999999999887776543221 1111 12222222222222
Q ss_pred HH-HhcCHhHHHHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 175 YR-VKKAFDKAEPLYLEAIKILQESFGPE---DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 175 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+. .....+ .......+.......... ....+.....++.++...|++.+|...+.....-... ..+......
T Consensus 103 ~l~~~~~~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~~~~kve 178 (445)
T 4b4t_P 103 YLKSSKSLD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SMEMSEKIQ 178 (445)
T ss_dssp HHHHHCTTH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSCHHHHHH
T ss_pred HHhcCCchh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--cccHHHHHH
Confidence 22 112111 111222222221111111 1224667788999999999999999999987533211 122345577
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
.+....+++...+++.+|...+.++........ +........+...|.++...++|.+|-.+|.++.......
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 888899999999999999999999865444432 1233456677889999999999999999999998765443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0056 Score=53.71 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=135.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
.|++++|++.+....+..+. +.|.+....+...+..++...|+++...+++.-... ..+.- ............
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~--~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~ql-k~ai~~~V~~~~ 101 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQ--ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQL-KLSIQYMIQKVM 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTTS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhh--ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhhh-HHHHHHHHHHHH
Confidence 36778888766544443332 255666788888999999999999887766543221 11211 111111111111
Q ss_pred HHH-HccCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 017109 216 FYL-VQRKLEDACTYYERALKIKGRVLGHG---NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCI 291 (377)
Q Consensus 216 ~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (377)
-+. .....+. ......++......... ....+.....|+.++...|++.+|...+.....- ..+..+.....
T Consensus 102 ~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E--t~~~~~~~~kv 177 (445)
T 4b4t_P 102 EYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE--TYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSSSCHHHHH
T ss_pred HHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHhcccHHHHH
Confidence 121 1122111 11112222211111110 1235667788999999999999999999987532 22233455667
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+....++|...+++.+|...+.++....... ..++. ....+...|.++...++|.+|..+|.++.+....
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 778888999999999999999999986544333 22333 4667788899999999999999999999876544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00064 Score=48.43 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHcCCh------hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKE------NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.....+..........|+. ++-++.|++++...+..........+..+...|.. ...++.++|.+.|+.++.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 3345566666666666888 78888899888775544333456677778888866 6779999999999999986
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
. ...+.++...|+.-.++|+...|.+.+.+++.+.
T Consensus 90 h--------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 C--------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp C--------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h--------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 1 1128899999999999999999999999998743
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.37 E-value=0.013 Score=52.32 Aligned_cols=173 Identities=10% Similarity=0.035 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC---------CC-----------------------CCHhHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF---------GE-----------------------RDPHVASAC 168 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~-----------------------~~~~~~~~~ 168 (377)
....++...+..+...|+.++|...|++|+.. .... .. .......++
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 34677888899999999999999999999976 2110 00 000111233
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-KLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
...+......++.+.|...|.++ .. +.. ...++...|.+-...+ +.+.|...|+.+++.. ++.+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~------~~~--~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~- 354 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GN------EGV--GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST- 354 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TT------SCC--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hC------CCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH-
Confidence 44444555567788888888887 21 111 2345555666666666 6999999999999864 2223
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
..+...+......|+.+.|...++++. .+ ...+......-...|+.+.+...+++++.....
T Consensus 355 --~~~~~yid~e~~~~~~~~aR~l~er~~---------k~---~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 355 --LLKEEFFLFLLRIGDEENARALFKRLE---------KT---SRMWDSMIEYEFMVGSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHSC---------CB---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHH---------HH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcc
Confidence 334456777788999999999998872 12 233555566666779999999999999987653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.014 Score=41.65 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKL------AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.+.......-..|+. ++-++.|++|+..............+..+...+.. ...++.++|.+.|+.++++ .
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-h- 90 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-C- 90 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH-C-
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH-h-
Confidence 4444445555555888 88888999988764322222344566777777755 5669999999999999997 1
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...+.++...|..-.++|+...|...+.+++...
T Consensus 91 ------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 ------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp ------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 1127889999999999999999999999999874
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0067 Score=53.02 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
...++..+|..|...|++++|.+.|.++...+. +. ......+.....++...+++..+..++.++.......+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-- 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---ST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG-- 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---Ch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC--
Confidence 345788999999999999999999999887652 22 45577888899999999999999999999988766543
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+...........|.++...++|.+|..+|..+...
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 44445555666788888999999999999887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.056 Score=37.57 Aligned_cols=85 Identities=18% Similarity=0.024 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhH---HHHHHHHHHHHHHHhcCCCch-hHHHHHHHH
Q 017109 138 KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK---AEPLYLEAIKILQESFGPEDI-RIGVAFHNL 213 (377)
Q Consensus 138 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l 213 (377)
....+...|.+.+.. .+....+.+++|.++....+... ++..++..+. .+.| ..-.+++.+
T Consensus 16 ~l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHH
Confidence 344555666665543 33556888999999998877665 5555555443 2323 566889999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|..+++.|+|++|..+++..+++-
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999984
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.012 Score=51.53 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...+...+|..|...|++++|.+.|.++..... ........+..+..++...+++..+..++.++....... +
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~ 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--G 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--C
Confidence 345678899999999999999999999887642 234677888999999999999999999999998876553 3
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+...........|.++...++|.+|..+|..+....
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 444455666777888899999999999998876553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.024 Score=39.45 Aligned_cols=67 Identities=19% Similarity=0.110 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHcCChhh---HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKEND---SEALFLESIRILEENGEGDSM-TCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+.+++|+++.......+ ++.+++..++. +.| ..-.+++.+|..+.+.|+|++|..+++..+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 346788999999999887665 66666665542 323 56678899999999999999999999999988
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.053 Score=47.69 Aligned_cols=176 Identities=7% Similarity=-0.050 Sum_probs=73.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH--HHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHH-------HHHHHHh-
Q 017109 130 GRDYFLQGKLAEAEKLFLSAL--QEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEA-------IKILQES- 198 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~~~~- 198 (377)
-..++..+++++|..+....+ +...... ..-+...+.+|+..+.++...|+........... +..++..
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 334567789999988877665 2221110 0113456778888888888888776543222111 2222221
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
...+....+..++.+-..|...+.+++|..+..++.-. .. ...+...+..++.+|.++..+++|.+|.+++..|+..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12244556788889999999999999999999887411 00 0112445777888999999999999999999999876
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 309 (377)
++.... .......++..+..+-+-+|+..+
T Consensus 300 ap~~~~-a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 300 APHNSK-SLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp CSCSSS-CSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcchh-hhhHHHHHHHHHHhHHhhcCCCCC
Confidence 443211 122333444444444444576543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.15 Score=47.45 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=82.5
Q ss_pred cCC-HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH---HHhcCHhHHHHHHHHHHHHHHHhc---CCCc-----
Q 017109 136 QGK-LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY---RVKKAFDKAEPLYLEAIKILQESF---GPED----- 203 (377)
Q Consensus 136 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~---~~~~----- 203 (377)
.|+ ++.|+.++++.... +|.... +...+.+. ....+--+|+....++++...... .+.+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455 57788888887654 444322 22222221 122345567777777775432111 1111
Q ss_pred --hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 204 --IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 204 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
+.....+...+..+...|+++-|+.+.++|+... |....+|..|+.+|..+|+|+.|+-.+.-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1223456666888888999999999999999996 777899999999999999999999877655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.12 Score=49.31 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=35.9
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
.....|++++|.+..+. . ++ ...+..+|..+...|+++.|+.+|.++-+
T Consensus 661 ~~l~~~~~~~A~~~~~~-------~---~~---~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-------E---SA---EMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-------C---CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHh-------h---Cc---HhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 34566777777665422 1 22 25789999999999999999999998633
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.2 Score=48.15 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..-..++.+-..|...|+.++|..++.+..+...+-. .....+|+.|-..|...|+.++|.+++++..+. |
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~----~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G 195 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK----LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Confidence 3456788999999999999999999988765433221 223578999999999999999999999998764 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKL-EDACTYYERALKI 236 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 236 (377)
- .|+ ..+|+.+-..+.+.|+. ++|.+++++..+.
T Consensus 196 ~-~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 L-TPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp C-CCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred C-CCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 1 222 46788888889999984 7888888877643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.13 Score=49.27 Aligned_cols=106 Identities=7% Similarity=-0.131 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
.....+++.+-..|...|+.++|..++.+..+...+-..++ ..+|+.+-..|.+.|+.++|.+.|++..+.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDA----- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 44566889999999999999999999988765433322333 468999999999999999999999998654
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCh-hhHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKE-NDSEALFLESIRI 278 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 278 (377)
|- .| ...+|+.+-..+.+.|+. ++|.+++++..+.
T Consensus 195 G~-~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 GL-TP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TC-CC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CC-CC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 21 13 345677777788888885 6888888876653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.35 Score=45.12 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=79.1
Q ss_pred hcC-HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHHhc---CCCC-----
Q 017109 178 KKA-FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL---VQRKLEDACTYYERALKIKGRVL---GHGN----- 245 (377)
Q Consensus 178 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~---~~~~----- 245 (377)
.|+ ++.|+.++++..+. .|.. .++...+.+.. ...+--+|+..+.++++...... .+.+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 57788888876654 2211 12222222221 22344577888877775432111 0111
Q ss_pred --hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 246 --IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 246 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
+.....+...+..+...|+++-|+++.++++.. .|....+|..|+.+|..+|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 222345666788889999999999999999987 3344567999999999999999999777654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.49 Score=40.60 Aligned_cols=110 Identities=15% Similarity=0.029 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC---CC-----------HhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE---RD-----------PHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
.+...|......|+.+.|...+.+|+.+++-.+-+ +. .....+...++..+...|++.+++..+.+
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555556789999999999999875322111 11 11234556678888999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
.+.. +|..-..+..+..++...|+..+|+..|++.......-.+
T Consensus 197 ~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 197 LTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 9876 3433468888999999999999999999999887655444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.28 Score=42.12 Aligned_cols=69 Identities=7% Similarity=-0.090 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+...++..+...|++.+|+..+...+.. +|..-..+..+..++...|+..+|+..|+++.....+-+|
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 34566788889999999999999998776 3544668888999999999999999999999887766555
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.12 Score=45.66 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
..++..||.+......++.|..+|.+|..+ .|..+..++.+|.+....|+.-+|+-+|.+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 357788999999999999999999999998 455578999999999999999999999988874
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.53 Score=32.88 Aligned_cols=65 Identities=6% Similarity=-0.079 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKL---AEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
...+.+..|.++....+. .+++.+++..++. ++ ..-++++.+|..+.+.|+|++|..+.+..+++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 347888999999888754 4677777776653 34 57889999999999999999999999999987
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.4 Score=33.51 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHcCCh---hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKE---NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...+.+++|+++.+..+. .+++.+++..++. +....-.+++.+|..+.+.|+|++|.++.+..+++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 357888999999988765 3577777776653 22245667889999999999999999999999876
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.57 Score=34.75 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=65.6
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
+....|+++.|.+..++. ++ ...|..+|......|+++-|+.+|+++-+..
T Consensus 14 LAL~lg~l~~A~e~a~~l----------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~---------------- 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----------ND---SITWERLIQEALAQGNASLAEMIYQTQHSFD---------------- 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH----------------
T ss_pred HHHhcCCHHHHHHHHHHh----------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH----------------
Confidence 345678888888776542 12 3578999999999999999999998864442
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
.+..+|...|+.+.-... .++....+ . +.....+++.+|+++++++.|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kl----a~iA~~~g---~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKM----QNIAQTRE---D------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHH----HHHHHHTT---C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHH----HHHHHHCc---c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 234455566665443333 23333222 1 222344566789998888888654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.6 Score=34.63 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+....|+++.|.+..++. .....|..+|......|+++-|+.+|.++-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 345788999888876542 2245788999999999999999999998643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.71 Score=32.72 Aligned_cols=67 Identities=6% Similarity=-0.053 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLA---EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
...++.++.|.++....+.. +++.+++..+.. +....-++++.+|..+.+.|+|++|..+.+..++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35678899999999887654 577777766653 12257789999999999999999999999999997
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.88 Score=33.27 Aligned_cols=98 Identities=5% Similarity=-0.140 Sum_probs=70.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH--------
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE-------- 281 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------- 281 (377)
-..++.++.-.|.|..++-++.+ ..++.+.+.-+.+|...+++..|+..++..+.--.+
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 45577788889999888766543 344566677788999999999999999998832111
Q ss_pred --cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 282 --NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 282 --~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...-+....-..+..+|.++...|+.++|+.++......
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 101112222334677899999999999999999887653
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=45.79 Aligned_cols=145 Identities=9% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHHHhcCHhHHHHHHHHHH--HHHHHhc-CCCchhHHHHHHHHHHHHHHccCHHHHHHHHH-------HHHHHHHH-hcC
Q 017109 174 LYRVKKAFDKAEPLYLEAI--KILQESF-GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYE-------RALKIKGR-VLG 242 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------~al~~~~~-~~~ 242 (377)
.+...+++++|.++....+ ......+ ..-+...+.+|+..+.++...|+......... ..+...+. ...
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456788999888877665 2222110 01144456778888888888887665432221 12222222 122
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.+....+..++.+-+.|...+.++.|..+..++. ++... ......+..++.+|.++..+++|.+|.+++..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3345567788889999999999999999999874 22211 1234567788899999999999999999999987643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.19 Score=47.88 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
..+...+...|.+++|+...+. +. . ........|++++|.+..+. ...
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------------~~---~---~f~~~l~~~~~~~A~~~~~~-------------~~~ 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------------QD---Q---KFELALKVGQLTLARDLLTD-------------ESA 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------------HH---H---HHHHHHHHTCHHHHHHHHTT-------------CCC
T ss_pred HHHHHHHHhCCChHHheecCCC-------------cc---h---heehhhhcCCHHHHHHHHHh-------------hCc
Confidence 5556667778888777755421 10 1 12234678999988877532 122
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
...+..+|..+...|+++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 457889999999999999999999885
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.2 Score=44.38 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+++..+|.+......++.|..+|.+|..+ .|.....++.||.+....|+.-+|.-+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 56778999999999999999999999998 8899999999999999999999999999998864
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.77 E-value=2.5 Score=36.24 Aligned_cols=131 Identities=10% Similarity=-0.028 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHH
Q 017109 227 CTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG---------DSMTCIRRLRYL 297 (377)
Q Consensus 227 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~l 297 (377)
.+.|+..+.-+.....+ - .....+..+.....+.++|.+++++........... .......+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L---~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--L---SVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--H---HHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--H---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45666655555432222 1 111123445566788999999998765433221100 112344566778
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+..|...|+.++|..+++++-.......+.+.......+...+..+...+++..+....-.++..
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999998888766665556777778888899999998876666555543
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=93.13 E-value=2.5 Score=33.02 Aligned_cols=58 Identities=9% Similarity=-0.083 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh
Q 017109 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 308 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 365 (377)
+.|...|+.|.++......+.||.......+.+..|.. .++.++|....+++++-.-.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999888889999777777777776655 79999999988888765433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=1.6 Score=30.89 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHcCChh---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKEN---DSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+.+++|+++....+.. +++.+++..+.. .....-.+++.+|..+.+.|+|++|.++.+..+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44678899999999887654 567777776652 12234556889999999999999999999999987
|
| >3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.05 E-value=2.7 Score=33.24 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 017109 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 307 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 363 (377)
.+.|...|+.|.++......+.||.......+.+..|.. .++.++|....+++++-.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888899999877777777777655 799999999888887654
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=3 Score=33.09 Aligned_cols=184 Identities=9% Similarity=-0.038 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
.-+..++.+..+.++|++...+.+++.+. +........=.+.++.+|-. .|....+...+... +......+
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~-----~~~~eLt~EERnLLSvaYKNvig~rR~swRiissi-eqke~~k~-- 80 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNS-----LGSEELTVEERNLLSVAYKNVIGARRASWRIISSI-EQKEESRG-- 80 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHhhccC--
Confidence 34557788888999999999999998875 20011112223333333321 12222333333221 11111101
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHh----------CChhHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE---GDSMTCIRRLRYLAQTYVKA----------NRLTDAE 311 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~----------g~~~~A~ 311 (377)
+.. ...+..-|.. .--++=...+...+.+...... .+....+..+...|..|.-. .-.+.|.
T Consensus 81 ~~~----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 81 NEE----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp CHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred cHH----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 111 1111111111 1112223344455554433211 11112222233345554422 1235788
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEA 362 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 362 (377)
..|+.|.++......+.||.......+.+..|.. .++.++|....+++++-
T Consensus 156 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 156 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999888899999777777777776655 79999998887776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.59 E-value=9.1 Score=38.15 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh---------------cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQES---------------FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
..+.+|.++...|++++|..+|+++-...... ..+........|..+..++...|.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34789999999999999999998873211000 000111233567788889999999999999999
Q ss_pred HHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 232 RALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
.|++.. .++.+. ....+.++-..+...|+|++|...+.
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 998764 233333 23467778888999999999977764
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.45 E-value=4.7 Score=34.55 Aligned_cols=133 Identities=8% Similarity=-0.023 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHH
Q 017109 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH---------GNIDYADTMYH 254 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~ 254 (377)
-.+.|+..+.-+.... ++. .....+..+.....+.++|.+++++........... .......+...
T Consensus 58 ~~~ly~~fi~~f~~ki---n~L--~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~ 132 (393)
T 4b4t_O 58 RLRLYDNFVSKFYDKI---NQL--SVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSE 132 (393)
T ss_dssp CHHHHHHHHHHHHHHS---CSH--HHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHH
Confidence 3456666666555432 221 111123445566788999999998765443322111 11234566778
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
++..|...|+.++|..+++++-.......+.+.......+...+..+...+++..+....-..+...
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 8999999999999999999999988887666666777777788888888999887766655555443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.90 E-value=4.8 Score=33.40 Aligned_cols=245 Identities=10% Similarity=-0.021 Sum_probs=132.9
Q ss_pred cccCCCh---hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH
Q 017109 92 STSQNDT---EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168 (377)
Q Consensus 92 ~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 168 (377)
....|+| =||...++....... -.+......++++.-+..+...|++..|.++..-.++.+.+..-+-+ ....
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~-~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~ 97 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYS-KQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASR 97 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 3445666 455444443332221 12244456666777777777777777777777777776666522222 2344
Q ss_pred HHHHHHHHHhcCHh-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH--------HHHHHHH
Q 017109 169 NNLAELYRVKKAFD-KAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER--------ALKIKGR 239 (377)
Q Consensus 169 ~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~ 239 (377)
..+..++.....-+ .=..+..++++-..+. +.........+..+|..|+..+++.+|..++-- ..++.-+
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45555555444211 2245666677665553 222233346788899999999999999888731 1122212
Q ss_pred hcCCCChhHHHHHHHHH-HHHHHcCChhhHHHHHHHHHHHHHHcCC-----------------CCCHHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLA-TVLYLQGKENDSEALFLESIRILEENGE-----------------GDSMTCIRRLRYLAQTY 301 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~la~~~ 301 (377)
......+.....+...+ ..|...++...|...+....+...+... +..|..- +..+..+-
T Consensus 177 w~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLN--Fl~lLllt 254 (336)
T 3lpz_A 177 WYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLN--FISMLLLS 254 (336)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHH--HHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHH--HHHHHHHH
Confidence 11111233334443333 4577889999999988877766533211 1123222 22222333
Q ss_pred HHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC
Q 017109 302 VKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG 347 (377)
Q Consensus 302 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 347 (377)
...+.. ..|+...+.+......+.+.....+..+|.+|....
T Consensus 255 ~q~~~~----~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 255 VQKGSP----DLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHSCCH----HHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HhcCCH----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 344543 445544444444333332245778888999998653
|
| >2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=90.71 E-value=5.3 Score=31.69 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Q 017109 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEARK 364 (377)
Q Consensus 308 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 364 (377)
+.|...|+.|.++. ....+.||.......+.+..|.. .++.++|....+++++-.-
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 57889999999999 87889999777777777776665 7999999999888877543
|
| >3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=5.4 Score=31.35 Aligned_cols=57 Identities=9% Similarity=-0.020 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 017109 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 307 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 363 (377)
.+.|...|+.|.++......+.||.......+.+..|.. .++.++|....+++++-.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888899999877777777766654 799999999888887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.37 E-value=10 Score=37.83 Aligned_cols=103 Identities=12% Similarity=-0.069 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---------------CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEG---------------FGERDPHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
.+.+|.++...|++++|..+|+++-...... ...........|..+..++...|.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4889999999999999999998874211000 0001112345677888899999999999999999
Q ss_pred HHHHHHHhcCCCchh-HHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 191 AIKILQESFGPEDIR-IGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 191 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
|++.. +++++. ....+.++=..+...|+|++|-..+..
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 98762 223332 334677888889999999999777643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.30 E-value=6.7 Score=32.23 Aligned_cols=181 Identities=9% Similarity=-0.015 Sum_probs=105.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|+|=+|.+.++.......+. .........+..-+..+...|++..|.+...-.++.+.+...+.+ ......+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~---~~~~~rl 98 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD---DISVARL 98 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS---HHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 34466666666665555444333 223344555555566666667777777776666666666532222 2234444
Q ss_pred HHHHHHccCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH------------HHHHH
Q 017109 214 GQFYLVQRKLE-DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES------------IRILE 280 (377)
Q Consensus 214 a~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------l~~~~ 280 (377)
..++.....-+ .=..+.++++....+..+ .....+..+..+|..+...|++.+|..++-.. .+...
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 44444422111 235777888888766543 22445678889999999999999999877311 12222
Q ss_pred HcCCCCCHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLA-QTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+.. ...+.....+...+ ..|...|+...|...++...+..
T Consensus 178 ~~~-~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 178 QVD-DIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HTT-CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred hcC-CCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 210 02333343333333 35678899999999999877665
|
| >2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 | Back alignment and structure |
|---|
Probab=89.20 E-value=6.4 Score=30.42 Aligned_cols=152 Identities=9% Similarity=-0.072 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH----hHHHHH-----------HHHHHHHHH-hcCHhH--------
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP----HVASAC-----------NNLAELYRV-KKAFDK-------- 183 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~-----------~~la~~~~~-~g~~~~-------- 183 (377)
.++.+.-+.++|++...+.++..+.+.....+-+. ....++ ..+..+-.. .|+-..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqkek~~~~~~~~i~~yr 90 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQLNNDELVKICSEYV 90 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57788888999999999999988721111001011 111222 222222222 132111
Q ss_pred ------HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 184 ------AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL-----VQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 184 ------A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
=...+...+.+..+..-|........+-..|..|. ..|+.+.|...|+.|.++..+...+.||......
T Consensus 91 ~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLa 170 (227)
T 2o8p_A 91 FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFI 170 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHH
Confidence 11223344444444444433222333334455544 3566889999999999999876777777665555
Q ss_pred HHHHHH-HHHcCChhhHHHHHHHHHHHH
Q 017109 253 YHLATV-LYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 253 ~~la~~-~~~~g~~~~A~~~~~~al~~~ 279 (377)
.+.+.. |.-.+++++|..+.++++.+.
T Consensus 171 LNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 171 QNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566555 446899999999999998764
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=7.8 Score=30.73 Aligned_cols=184 Identities=10% Similarity=-0.024 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
-+..++.+..+.++|++...+.+++.+.- ........-.+.+..+|-. .|....+...+.. ++.-....+ +.
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~~-----~~~eLt~EERnLLSvaYKNvig~rR~swRiiss-ieqke~~k~-~~ 82 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNSL-----GSEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG-NE 82 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTC-----SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTT-CH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-----CCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHhhccC-cH
Confidence 34567888888999999999999988741 0011223333444444432 1223333333322 111111101 11
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--CCCh-hHHHHHHHHHHHHHHc-----C-----ChhhHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG--HGNI-DYADTMYHLATVLYLQ-----G-----KENDSEA 270 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~-~~~~~~~~la~~~~~~-----g-----~~~~A~~ 270 (377)
. ...+..-|.. .=-.+=..++...+.+..+..- ..++ .....+-..|..|... | -.+.|..
T Consensus 83 ~-----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~ 156 (260)
T 1o9d_A 83 E-----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT 156 (260)
T ss_dssp H-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHH
Confidence 1 1111111111 1112223344445554433211 1111 1222233345554432 1 1357888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIM 321 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 321 (377)
.|++|.++......+.+|.......+.+..|.. .|++++|..+.+++..-.
T Consensus 157 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 157 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 999999999876777888877777777777665 699999998888776543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.20 E-value=10 Score=31.48 Aligned_cols=182 Identities=9% Similarity=-0.020 Sum_probs=98.9
Q ss_pred HHcCCH---HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 017109 134 FLQGKL---AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAF 210 (377)
Q Consensus 134 ~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 210 (377)
...|+| =+|.+.++.....+.+. .........++.=+..+...|+...|.++..-.++.+.+..-+-+ ....
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~ 97 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASR 97 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 344555 45555554444333322 223334445555555666666666666666666666555432222 1333
Q ss_pred HHHHHHHHHccCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHH--------HHHHHHHH
Q 017109 211 HNLGQFYLVQRKL-EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFL--------ESIRILEE 281 (377)
Q Consensus 211 ~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~~~ 281 (377)
..+..++.....- ..=..+.++++....+.. ......+.....+|..+.+.+++.+|..++- ...++.-+
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4444444443321 122557788888877643 2234456778889999999999999988762 11111111
Q ss_pred cCCCCCHHHHHHHH-HHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLR-YLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 282 ~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
......+.....+. .....|...++...|...+....+..
T Consensus 177 w~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 177 WYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 10011122222232 33445778899999999888877655
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.27 E-value=11 Score=30.01 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=79.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 017109 132 DYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFH 211 (377)
Q Consensus 132 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 211 (377)
.....|++++|+......++. .|..+.....+..++.-.|+++.|.+-++.+.++ .|+....+..|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-----~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhhHHHHHHH
Confidence 356789999999999988875 7888899999999999999999999999998887 222222222222
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHH--HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 212 NLGQFYLVQRKLEDACTYYERALKIKG--RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 212 ~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
.+-. |+..=.+.+.-.. ...+. +........-+......|+.++|...-.++++..+..
T Consensus 73 ~lI~----------aE~~R~~vfaG~~~P~~~g~--~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 73 HLVK----------AAQARKDFAQGAATAKVLGE--NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHH----------HHHHHHHHTTSCCCEECCCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHH----------HHHHHHHHHcCCCCCCCCCC--CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 2111 1111111111000 01111 2223334445566677899999999999998875443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.18 E-value=9.1 Score=30.54 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=79.1
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
...+.|+.++|+......++.. |..+.....+..++.-.|+++.|..-++.+.++.+. ....+..|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~-----~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-----YLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-----GHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-----hhHHHHHHH
Confidence 3567789999999998887763 777788888899999999999999999988887322 112222222
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHH--HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIM--ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+-.+-. .=.+++.-- ....+ .+........-+......|+.++|...-.++++..+.+.|
T Consensus 73 ~lI~aE~----------~R~~vfaG~~~P~~~g--~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 73 HLVKAAQ----------ARKDFAQGAATAKVLG--ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHH----------HHHHHTTSCCCEECCC--SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHH----------HHHHHHcCCCCCCCCC--CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 2211111 111111100 00111 1212233334455566789999999999999987665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.16 E-value=18 Score=34.78 Aligned_cols=196 Identities=14% Similarity=0.076 Sum_probs=100.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP--EDIRIGVAFHNL 213 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l 213 (377)
.|+.++++..+.+.+.. ....+......+++.+|.++...++ ++..++...+.......+. .......+...+
T Consensus 387 ~g~~~~gl~~L~~yL~~---~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPG---SRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp SSCTTTHHHHHTTTSTT---SCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccc---cCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 45555555555443320 0012223457788888888877664 6777777666542100010 012223456678
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
|.++...++ +++.+.+...+.. ++.. ...+-..+|.++...|+-+-...++.-+.+ . .+....
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~d-------d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~---~~e~vr- 525 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYN-------DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T---QHGNIT- 525 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C---SCHHHH-
T ss_pred HHHhcCCCC-HHHHHHHHHHHhc-------CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c---CcHHHH-
Confidence 888776666 3455555555432 1121 124566788888888876554444444332 2 122222
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
-...+|......|+.+.+....+..... .++. ...+...+|..|...|+...-...+..+
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~ 586 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA 586 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 2233444444567777666655543321 1222 2334456677777888865444344443
|
| >3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis} | Back alignment and structure |
|---|
Probab=86.09 E-value=11 Score=31.23 Aligned_cols=71 Identities=8% Similarity=-0.068 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 291 IRRLRYLAQTYVKAN--RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 291 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
..++.+||.+-...- ....++.+|.+++...+..++..| ..-+..+|-.+.+.+++.+|+..+.++-....
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 344566666654332 223489999999999999888777 46677788899999999999998887766543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.95 E-value=13 Score=30.49 Aligned_cols=152 Identities=8% Similarity=-0.113 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh-hHHHHHHHHHHHHHHcCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN-DSEALFLESIRILEENGEG 285 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~ 285 (377)
...+..-+..+.+.|++..|.+...-.++...+...+. .......+..++.....-+ .=..+.+++++-..+.++.
T Consensus 53 idlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~---~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~ 129 (312)
T 2wpv_A 53 IELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV---DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY 129 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC---SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC
Confidence 33444445555566666666666666666655543321 1223344444444432222 3356777888777766431
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHH------------HHHHHHhccCCCChhHHHHHHHHH-HHHHHcCCHHHH
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRK------------ILHIMESSKGWNSLDTVIAAEGLA-LTLQSTGSLMEA 352 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A 352 (377)
.......+..+|..|...|++.+|..+|-. ..+...... ...+.....+...+ ..|...|+...|
T Consensus 130 -~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~-~~~~~e~dlf~~RaVL~yL~l~n~~~A 207 (312)
T 2wpv_A 130 -KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVD-DIEDSTVAEFFSRLVFNYLFISNISFA 207 (312)
T ss_dssp -TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHTTBHHHH
T ss_pred -CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHhcCHHHH
Confidence 223345677889999999999999887731 112222210 02343344443333 356788999999
Q ss_pred HHHHHHHHHHH
Q 017109 353 QELFERCLEAR 363 (377)
Q Consensus 353 ~~~~~~al~~~ 363 (377)
...+....+..
T Consensus 208 ~~~~~~f~~~~ 218 (312)
T 2wpv_A 208 HESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877655
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.76 E-value=26 Score=33.77 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=91.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC--CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE--RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
+.....-+++.+|.++...+ +++..++...+.......+. .......+...||.++...++- ++.+.+...+.-
T Consensus 408 ~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~d- 483 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLYN- 483 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhc-
Confidence 34456677888888777666 46777777766542100000 0123345667888888877763 455555555542
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
++......+-..+|.++...|+-+-....+..+.+. . +. ...-...+|..+...|+.+.+....+..
T Consensus 484 -----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~------~-~e-~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 484 -----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET------Q-HG-NITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC------S-CH-HHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc------C-cH-HHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 111112246667888888888876555555544321 1 12 2222233444444567766665554443
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 017109 276 IRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315 (377)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (377)
.. . .+......+...+|..|...|+...-..++.
T Consensus 551 ~~----~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 551 LA----S--DESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HH----C--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred Hh----C--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 32 1 1222233334455666666666543333443
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=83.36 E-value=5.9 Score=25.37 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=31.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
.+...+..+...+..+...|+|++|+++.+++.....+.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 334457778889999999999999999999998765544
|
| >3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=5.2 Score=31.76 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhhC--CCCCHhHHHHHHHHHHHHH-HhcCHhHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGK----------LAEAEKLFLSALQEAKEGF--GERDPHVASACNNLAELYR-VKKAFDKAEPL 187 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 187 (377)
..+-.+-..|..|...-. .+.|...|+.|.+++.... ++.+|.......+.+..|+ ..+++++|...
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445556777765422 4678899999999998777 7888888777777777766 57999999999
Q ss_pred HHHHHHH
Q 017109 188 YLEAIKI 194 (377)
Q Consensus 188 ~~~al~~ 194 (377)
.++|.+-
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
|
| >3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A* | Back alignment and structure |
|---|
Probab=82.01 E-value=20 Score=30.53 Aligned_cols=69 Identities=16% Similarity=-0.013 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHh---CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 292 RRLRYLAQTYVKA---NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 292 ~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++.+||.+-... |+ ..++.+|.+++...+..++..| ..-|..+|-.+.+.+++.+|+..+..+-....
T Consensus 278 mALgnLgDLEe~~pt~gr-~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 278 MALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp HHHHHHHHHHHHSCCTTC-CCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhcchhhHhhcCCCCCC-CCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 3445555554432 22 2488999999999998888777 46677788899999999999988877766543
|
| >3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ... | Back alignment and structure |
|---|
Probab=81.54 E-value=17 Score=28.34 Aligned_cols=182 Identities=11% Similarity=0.019 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
-+..++.+..+.++|++...+.++..+. ++ .....=.+.++..|-. .|....+...+....+.....+++.+
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~-----~~--eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~ 82 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEK-----GE--ELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEK 82 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-----CC--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHH
Confidence 4556788889999999999999888765 21 1112333344444422 12223333333221111100111111
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHH-----hCC-----hhHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE---GDSMTCIRRLRYLAQTYVK-----ANR-----LTDAET 312 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 312 (377)
.....-+.. .+- .+=...+...+.+...... .+.......+...|..|.- .|+ .+.|..
T Consensus 83 ~~~i~~yr~--kie------~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~ 154 (236)
T 3iqu_A 83 GPEVREYRE--KVE------TELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS 154 (236)
T ss_dssp CSHHHHHHH--HHH------HHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHH--HHH------HHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 111111111 110 1122333444444332210 0112222223344555543 233 367889
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQ-STGSLMEAQELFERCLEAR 363 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 363 (377)
.|+.|.++......+.||.......+.+..|. -.++.++|....+++++-.
T Consensus 155 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 155 AYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999988889999987777777776655 5699999999888877643
|
| >2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A* | Back alignment and structure |
|---|
Probab=80.60 E-value=8.6 Score=24.33 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH-HHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC-NNLAELY 175 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 175 (377)
..++....-|.-++..++|.+|..+++++... .+++..-.++ +.++.|-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999987 5677776665 5566553
|
| >4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A* | Back alignment and structure |
|---|
Probab=80.48 E-value=23 Score=30.16 Aligned_cols=70 Identities=14% Similarity=-0.056 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 292 RRLRYLAQTYVKAN--RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 292 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++.+||++-...- ..+.++.+|.+++...+..+...| ...|..+|-.+.+.+++.+|...+.++-....
T Consensus 263 mALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~ 334 (489)
T 4gq4_A 263 MALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 334 (489)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence 34555555544322 223477899999999998887777 56777889999999999999999888766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 377 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-06 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-05 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.003 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.002 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.002 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.9 bits (172), Expect = 4e-14
Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 40/232 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G + QG++ A F A+ DP+ A NL + + + FD+A YL
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAV--------TLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
A+ + V NL Y Q ++ A Y RA+++ +
Sbjct: 228 RALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFP 271
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
D +LA L +G ++E + ++R T L LA + + +
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALR--------LCPTHADSLNNLANIKREQGNIEE 323
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361
A + RK L + + A LA LQ G L EA ++ +
Sbjct: 324 AVRLYRKALEVFP--------EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (153), Expect = 9e-12
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 24/168 (14%)
Query: 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYR 176
++ + V + Y+ QG + A + A+ E PH A NLA +
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--------ELQPHFPDAYCNLANALK 282
Query: 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
K + +AE Y A+++ +NL Q +E+A Y +AL++
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADS--------LNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 237 KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
++A +LA+VL QGK ++ + E+IRI +
Sbjct: 335 --------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 3e-10
Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 32/203 (15%)
Query: 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV 177
+ + + + G A + P+ A NLA +Y
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAY--------LRALSLSPNHAVVHGNLACVYYE 249
Query: 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+ D A Y AI++ A+ NL + + +A Y AL
Sbjct: 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL--- 298
Query: 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297
+AD++ +LA + QG ++ L+ +++ + E L
Sbjct: 299 -----RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA--------HSNL 345
Query: 298 AQTYVKANRLTDAETVQRKILHI 320
A + +L +A ++ + I
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRI 368
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 4e-09
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+G +AEAE + +AL+ P A + NNLA + R + ++A LY
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR--------LCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+++ PE A NL Q KL++A +Y+ A++I + +A
Sbjct: 330 KALEV-----FPEFAA---AHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFA 373
Query: 250 DTMYHLATVLYLQG 263
D ++ L
Sbjct: 374 DAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 5e-07
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ G AE+ + ++P L+ ++ + D++
Sbjct: 6 AHREYQAGDFEAAERHCMQLW--------RQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYY 230
AIK + + A+ NLG Y + +L++A +Y
Sbjct: 58 LAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHY 90
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 109 IEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168
+ + + + + QG + EA +L+ AL E P A+A
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL--------EVFPEFAAAH 342
Query: 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLED 225
+NLA + + + +A Y EAI+I A+ N+G ++++D
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTL---KEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTY 229
LA F+ AE ++ + P++ L + R+L+ + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQ-----EPDNTG---VLLLLSSIHFQCRRLDRSAHF 55
Query: 230 YERALKIKGRVLGHGNIDYADTMYHLATVLY 260
A+K N A+ +L V
Sbjct: 56 STLAIKQ--------NPLLAEAYSNLGNVYK 78
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 59.2 bits (141), Expect = 2e-10
Identities = 35/248 (14%), Positives = 74/248 (29%), Gaps = 9/248 (3%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
+ G EAE+L AL+E G A + L E+ K ++ L
Sbjct: 19 AQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQ 75
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+ ++ ++ + + Q L+ A E+A ++ +
Sbjct: 76 QTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309
+ A +L+ + +++EA I +L + C+ L + +
Sbjct: 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 193
Query: 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369
+L + ++S A + + Q TG A +
Sbjct: 194 QLNRLENLLG----NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249
Query: 370 DHIQVCFL 377
Q +
Sbjct: 250 LQGQWRNI 257
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 44.5 bits (103), Expect = 1e-05
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 5/134 (3%)
Query: 149 ALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208
L+ + + + N+A + F+ AE + E + + +
Sbjct: 235 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNR 292
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN-IDYADTMYHLATVLYLQGKEND 267
L Q Y + DA ALK+ R + + + M L +
Sbjct: 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352
Query: 268 SEALFLESIRILEE 281
E + RIL E
Sbjct: 353 LEQHRAQ--RILRE 364
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 36.8 bits (83), Expect = 0.003
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
R L G+ AE + + A+ + L +LY A+ + L
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 315
Query: 190 EAIKILQES-FGPEDIRIGVAFHNLGQFYLVQRKLEDA 226
+A+K+ + F + G A + + L +
Sbjct: 316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (130), Expect = 5e-09
Identities = 26/227 (11%), Positives = 62/227 (27%), Gaps = 9/227 (3%)
Query: 139 LAEAEKLFLSALQEAKEGFGERDPH---VASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
L AEK + + K G A C A +YR++K + A +L+A
Sbjct: 8 LKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ 67
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
+++ ++ G + + + +A E A++I
Sbjct: 68 KKAGNEDE--AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125
Query: 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315
L + + + + + + A + +A +
Sbjct: 126 ILENDLHDYAKAIDC-YELAGEWYAQ--DQSVALSNKCFIKCADLKALDGQYIEASDIYS 182
Query: 316 KILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362
K++ ++ + L + + A +
Sbjct: 183 KLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (129), Expect = 1e-08
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 26/135 (19%)
Query: 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKA 184
+ G Q + K S+ +L ++ R + +A
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCS----------YICQHCLVHLGDIARYRNQTSQA 171
Query: 185 EPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244
E Y A +++ + G ++ L + YY R++ +K
Sbjct: 172 ESYYRHAAQLVPSN--------GQPYNQLAILASSKGDHLTTIFYYCRSIAVK------- 216
Query: 245 NIDYADTMYHLATVL 259
+ +L L
Sbjct: 217 -FPFPAASTNLQKAL 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 8e-08
Identities = 23/229 (10%), Positives = 54/229 (23%), Gaps = 30/229 (13%)
Query: 134 FLQGKLAEAEKLFLSALQEAKEGFGE---RDPHVASACNNLAELYRVKKAFDKAEPLYLE 190
+ A +K+ A + + N + + A Y +
Sbjct: 45 VTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQ 104
Query: 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250
++ L F D+ V LG Q +
Sbjct: 105 LLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----------YICQH 153
Query: 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA 310
+ HL + + + + +E+ + + +++ NG+ LA
Sbjct: 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP--------YNQLAILASSKGDHLTT 205
Query: 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359
+ + + A+ L L + +
Sbjct: 206 IFYYCRSIAVKFPFPA--------ASTNLQKALSKALESRDEVKTKWGV 246
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 47.7 bits (113), Expect = 7e-07
Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 23/155 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
++ +G+L +A +L + A+ + P AS ++ EL + F++A+ +
Sbjct: 3 WKNALSEGQLQQALELLIEAI--------KASPKDASLRSSFIELLCIDGDFERADEQLM 54
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
++IK+ L A + + G +
Sbjct: 55 QSIKL--------FPEYLPGASQLRHLVK-------AAQARKDFAQGAATAKVLGENEEL 99
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284
+ + L L+ + +E G
Sbjct: 100 TKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 1e-06
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G D + + A K + A E DP + N A +Y K ++K L
Sbjct: 11 GNDAYKKKDFDTALKHYDKA--------KELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+AI++ + +I A+ +G Y + K +DA +Y ++L
Sbjct: 63 KAIEV-GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 44.9 bits (105), Expect = 3e-06
Identities = 19/160 (11%), Positives = 48/160 (30%), Gaps = 11/160 (6%)
Query: 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187
+ G YF GK +A + + + +G + ++ + L + +
Sbjct: 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC-YLKLR 78
Query: 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247
+ D + G+ L+ + E A +E+ L++ N
Sbjct: 79 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQ 130
Query: 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287
+ + N+ + + ++ E D+
Sbjct: 131 NKAARLQIFMCQKKAKEHNERDRRTYA--NMFKKFAEQDA 168
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 27/188 (14%)
Query: 139 LAEAEKLFLSAL--------QEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLE 190
L EA L+ + + A + F + C N+ +Y + K +AE +
Sbjct: 2 LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK-------IKGRVLGH 243
+I + VA+ G Y K + A + AL I ++LG
Sbjct: 62 SINRDKHLA--------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 113
Query: 244 GNIDYADTMYH-LATVLYLQGKENDSEALFLESIRILEENGEG---DSMTCIRRLRYLAQ 299
+A + + +A + + + +E + + E +M C+ + +
Sbjct: 114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEP 173
Query: 300 TYVKANRL 307
+ RL
Sbjct: 174 VVIPVGRL 181
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 17/134 (12%)
Query: 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK 183
R+ + G Y + + EAEK F ++ RD H+A A LY + +D
Sbjct: 37 RICFNIGCMYTILKNMTEAEKAFTRSI--------NRDKHLAVAYFQRGMLYYQTEKYDL 88
Query: 184 AEPLYLEAIKILQESFGPEDIRIGVAF--------HNLGQFYLVQRKLEDACTYYERALK 235
A EA+ L+ + + +G+ F +N+ Y + + + A A
Sbjct: 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148
Query: 236 IKGRVLGHGNIDYA 249
+K H ID A
Sbjct: 149 MKSE-PRHSKIDKA 161
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 24/158 (15%)
Query: 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187
+ G F+ K EA + A+ R+P VA N A Y + ++A
Sbjct: 9 EQGNRLFVGRKYPEAAACYGRAI--------TRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247
A+++ D + A LGQ L ++A +RA + +
Sbjct: 61 CRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL--------AKE 104
Query: 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285
K+ ++ I E
Sbjct: 105 QRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSY 142
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 5e-05
Identities = 39/258 (15%), Positives = 76/258 (29%), Gaps = 33/258 (12%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G +G L A LF +A+ ++DP A L + A
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAV--------QQDPKHMEAWQYLGTTQAENEQELLAISALR 77
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLV--QRKLEDACTYYERALKIKGRVLGHGNID 247
+++ ++ + Q R Y + G +
Sbjct: 78 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137
Query: 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL 307
+ + L + + LFL ++R+ + + D + L L+ Y KA
Sbjct: 138 PS---KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 308 TDAETVQRKILHIMESSKGWNSLDTVIAAE--------------------GLALTLQSTG 347
A R +++ + G + + E L ++ + G
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 254
Query: 348 SLMEAQELFERCLEARKK 365
+ EA E F L ++K
Sbjct: 255 AHREAVEHFLEALNMQRK 272
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 9/162 (5%)
Query: 212 NLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL 271
G L + L +A +E A++ + + + +L T +E + +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISA 75
Query: 272 FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331
+ + +N + Q D H++ ++
Sbjct: 76 LRRCLELKPDNQTALMALAVSFTNESLQRQACEIL-RDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQ 373
+ ++ + +L S +E +ELF + + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFH---NLGQ 215
E P + NL A +A +LEA+ + ++S GP ++ + L
Sbjct: 234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293
Query: 216 FYLVQRKLEDACTYYERALKIKGRVLG 242
+ + + R L + G
Sbjct: 294 ALSMLGQSDAYGAADARDLSTLLTMFG 320
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 5e-04
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIK---GRVLGHGNIDYADTMYHLATVLYLQGKE 265
+ +NLG + +A ++ AL ++ G G + L L + G+
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
Query: 266 NDSEALFLESIRILEE 281
+ A + L
Sbjct: 302 DAYGAADARDLSTLLT 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.001
Identities = 15/159 (9%), Positives = 42/159 (26%), Gaps = 9/159 (5%)
Query: 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTY 229
+ A L+ A++ P+ + A+ LG + A +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHME---AWQYLGTTQAENEQELLAISA 75
Query: 230 YERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289
R L++K + D ++ EG
Sbjct: 76 LRRCLELKPDNQTALMALAVSFTNESLQRQACE-ILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328
+ + + + + + + + + + + +S +
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 173
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 3e-04
Identities = 15/106 (14%), Positives = 24/106 (22%), Gaps = 11/106 (10%)
Query: 132 DYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEA 191
+ L + EK F S G R K L E
Sbjct: 8 ELVSVEDLLKFEKKFQSEKA-----AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 192 IKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+ + + L ++ E A Y L+ +
Sbjct: 63 LPKGSKEEQRD------YVFYLAVGNYRLKEYEKALKYVRGLLQTE 102
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 17/143 (11%), Positives = 36/143 (25%), Gaps = 9/143 (6%)
Query: 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187
+ G YF +GK +A + + + + A + +
Sbjct: 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC-HLKLQ 76
Query: 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247
A D G+ +L E A +++ L++ +
Sbjct: 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPN 128
Query: 248 YADTMYHLATVLYLQGKENDSEA 270
LA ++ E
Sbjct: 129 NKAAKTQLAVCQQRIRRQLAREK 151
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 35.8 bits (81), Expect = 0.003
Identities = 18/152 (11%), Positives = 36/152 (23%), Gaps = 24/152 (15%)
Query: 126 FTDSGRDYFLQGKLAEAEKLFLSALQ--------EAKEGFGERDPHVASACNNLAELYRV 177
+ G +F A K + L+ + P S N+
Sbjct: 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL- 88
Query: 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237
+ + D A + Q + ++ + A ++A +I
Sbjct: 89 -------KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI- 140
Query: 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269
+ L V + D E
Sbjct: 141 -------APEDKAIQAELLKVKQKIKAQKDKE 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.82 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.79 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.77 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.76 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.57 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.56 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.48 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.48 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.46 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.42 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.33 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.03 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.8 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.75 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.58 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.15 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.08 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.63 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.52 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 90.33 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 89.92 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.59 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 89.55 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 89.06 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 88.47 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 82.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.99 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.2e-22 Score=165.67 Aligned_cols=211 Identities=18% Similarity=0.183 Sum_probs=177.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.+..|..++..|++++|+..|+++++. +|....++..+|.++...|++++|+..+.+++++ .|+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~--- 85 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPD--- 85 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-----ccc---
Confidence 467899999999999999999999986 7888999999999999999999999999999998 333
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--------------------------------------------c
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV--------------------------------------------L 241 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------------~ 241 (377)
....+..+|.++...|++++|+..+++++...... .
T Consensus 86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999877542110 0
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.++ .....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+++|++++++.
T Consensus 166 ~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 166 DPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp STT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhc-ccccccchhhHHHHHHHHHHhhhhcccccccccc--------cccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 111 1124567889999999999999999999998862 2334678899999999999999999999999872
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
|....++..+|.+|...|++++|+.+|++++++.++..+.
T Consensus 237 --------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 237 --------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred --------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence 4447899999999999999999999999999998875543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-20 Score=158.55 Aligned_cols=246 Identities=13% Similarity=0.073 Sum_probs=198.7
Q ss_pred hcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.....|++++|...+.+++.. +|....++..+|.++...|++++|+..+.+++++ +|.....+..
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 92 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQ-------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMA 92 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------cccccccccc
Confidence 355689999999999998854 3445689999999999999999999999999988 6777889999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHh--------------------------------------------cCCCchhH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQES--------------------------------------------FGPEDIRI 206 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------------~~~~~~~~ 206 (377)
+|.++...|++++|+..+++++...... ..|+. ..
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~-~~ 171 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS-ID 171 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS-CC
T ss_pred ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc-cc
Confidence 9999999999999999999887542110 00111 12
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
..++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++++.
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 236 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------- 236 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred cccchhhHHHHHHHHHHhhhhcccccccccc--------cccccchhhhhhcccccccchhHHHHHHHHHHHh-------
Confidence 4567889999999999999999999999874 5667899999999999999999999999999872
Q ss_pred CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 287 SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS---LDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
|....++..+|.+|..+|++++|+..|++++++.....+... .....++..++.++...|+.+.+...-.+.++..
T Consensus 237 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l~~l 315 (323)
T d1fcha_ 237 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 315 (323)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred -hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCHHHH
Confidence 233457889999999999999999999999998766543211 1123456778889999999988888888877777
Q ss_pred HhhCC
Q 017109 364 KKLMP 368 (377)
Q Consensus 364 ~~~~~ 368 (377)
.+.++
T Consensus 316 ~~~~~ 320 (323)
T d1fcha_ 316 LTMFG 320 (323)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 66665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=5e-19 Score=150.55 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=207.8
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|++++|...+.+++...+. .+.+..+.++..+|.++...|++++|+..+++++++.... ++.+....++..+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~--~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPP--GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQ 97 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcC--CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHH
Confidence 45689999999999999876543 2445567789999999999999999999999999988776 5566778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+.++...|++..|...+.+++.+......+..+....++..+|.++...|+++.+...+.++........ ......+
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~ 174 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQC 174 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---GGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh---hhhHHHH
Confidence 9999999999999999999999988877777777788899999999999999999999999887654321 1222334
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-------------------------------------CCCCHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENG-------------------------------------EGDSMTCIRRL 294 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~~~~~ 294 (377)
+...+..+...+++.++...+.++........ ..+.+.....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 44444445455555544444444433322211 11233444556
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 295 RYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.++|.++...|++++|..++++++...+.. ...+....++..+|.+|..+|++++|...+++++++.++.
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence 789999999999999999999999987765 3456778899999999999999999999999999987764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.9e-21 Score=165.46 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=179.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.|....++..+|..+...|++++|...++++++. +|....++..+|.++...|++++|+..++++...
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 232 (388)
T d1w3ba_ 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---- 232 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH----
T ss_pred CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH----
Confidence 3455678899999999999999999999999987 6778889999999999999999999999999887
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
. +.....+..+|.++...|++++|+..+++++++. |....++..+|.++...|++++|+..+++++..
T Consensus 233 -~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 300 (388)
T d1w3ba_ 233 -S---PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp -C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred -h---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 2 2335788899999999999999999999999873 566788999999999999999999999998875
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
. +.....+..+|.++...|++++|+.++++++++ +|....++..+|.++...|++++|+.+|++
T Consensus 301 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 301 C--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp C--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred C--------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 233456788999999999999999999999875 345578999999999999999999999999
Q ss_pred HHHH
Q 017109 359 CLEA 362 (377)
Q Consensus 359 al~~ 362 (377)
++++
T Consensus 365 al~l 368 (388)
T d1w3ba_ 365 AIRI 368 (388)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9984
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.2e-20 Score=162.24 Aligned_cols=210 Identities=20% Similarity=0.175 Sum_probs=181.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|.....+++.. +|....++..+|.++...|++++|+..++++... .+.....+..+
T Consensus 179 ~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 243 (388)
T d1w3ba_ 179 FNAQGEIWLAIHHFEKAVTL-------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNL 243 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHh-------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--------hhhHHHHHHHH
Confidence 34578888888888777653 3445678999999999999999999999999887 56677889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..+++++++ .|+. ..++..+|.++...|++++|+..+++++... |.....
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~ 307 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIEL-----QPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADS 307 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT-----CSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--------Cccchh
Confidence 99999999999999999999987 3333 5789999999999999999999999998774 566778
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..++.++...|++++|+.++++++++ .|....++..+|.++...|++++|+.+|++++++ +|.
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~ 371 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTT
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 899999999999999999999999875 2334567889999999999999999999999976 355
Q ss_pred HHHHHHHHHHHHHHcCC
Q 017109 332 TVIAAEGLALTLQSTGS 348 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~ 348 (377)
...++..+|.+|.++||
T Consensus 372 ~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 372 FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 57899999999999886
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.4e-18 Score=143.35 Aligned_cols=230 Identities=13% Similarity=0.026 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
+..+..|...|.+|...|++++|++.|.+++++..+. .+.+..+.++.++|.+|...|++++|+.++++++++.....
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~ 111 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence 4457789999999999999999999999999998886 55677889999999999999999999999999999988763
Q ss_pred CCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+......++..+|.++.. .|++++|+.++++++++......+ +....++.++|.++..+|++++|+..|++++..
T Consensus 112 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~--~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 112 --QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV--ALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch--hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 455667889999999865 699999999999999998764332 566788999999999999999999999999887
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH--cCCHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS--TGSLMEAQELF 356 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~ 356 (377)
...... ........+...+.++...|++..|...++++.++...... ......+..+...+.. .+.+++|+..|
T Consensus 188 ~~~~~~-~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~---sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 188 SMGNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp TSSCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred Cccchh-hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc---hHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 554432 23344556778899999999999999999998876533211 1113445556666554 35578888777
Q ss_pred HHH
Q 017109 357 ERC 359 (377)
Q Consensus 357 ~~a 359 (377)
+++
T Consensus 264 ~~~ 266 (290)
T d1qqea_ 264 DNF 266 (290)
T ss_dssp TTS
T ss_pred HHH
Confidence 543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=5.5e-19 Score=143.53 Aligned_cols=207 Identities=15% Similarity=0.046 Sum_probs=150.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.++..+.+++.+|.+|...|++++|+..|++++++ +|..+.++..+|.++..+|++++|+..|++++++
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--- 100 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 100 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH---
Confidence 45667899999999999999999999999999998 7788899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.|+ ...++.++|.++..+|++++|+..++++++.. |........++..+...+..+.+.........
T Consensus 101 --~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 101 --DPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp --CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred --Hhh---hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 333 35789999999999999999999999999874 33344555666666666655444443333222
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
. ....+........++. ....+..+.+...+....... +....++..+|.++...|++++|+.+|+
T Consensus 168 ----~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (259)
T d1xnfa_ 168 ----S-DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLA--------EHLSETNFYLGKYYLSLGDLDSATALFK 233 (259)
T ss_dssp ----S-CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----c-chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcC--------cccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1 1222222111111111 111223344444444444332 4446788999999999999999999999
Q ss_pred HHHHH
Q 017109 358 RCLEA 362 (377)
Q Consensus 358 ~al~~ 362 (377)
+++..
T Consensus 234 ~al~~ 238 (259)
T d1xnfa_ 234 LAVAN 238 (259)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 99874
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=9.1e-19 Score=145.87 Aligned_cols=203 Identities=10% Similarity=-0.010 Sum_probs=169.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~ 197 (377)
.|....++..+|.++...+.+++|+..+++++++ +|....++.+.|.++...| ++++|+.+++++++.
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--- 107 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--- 107 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence 4677889999999999999999999999999998 8899999999999999887 599999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+|....++.++|.++..+|++++|+..+.+++++. |....++.++|.++...|++++|+..++++++
T Consensus 108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d--------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh--------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44457899999999999999999999999999984 67788999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCC------hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANR------LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLME 351 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 351 (377)
+ +|....++.++|.++...+. +++|+..+.+++++. |....++..++.++...| .++
T Consensus 175 ~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--------P~~~~~~~~l~~ll~~~~-~~~ 237 (315)
T d2h6fa1 175 E--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRG-LSK 237 (315)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTC-GGG
T ss_pred H--------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--------CCchHHHHHHHHHHHhcC-hHH
Confidence 7 23334568888988887776 468888888888773 334566777777655443 466
Q ss_pred HHHHHHHHHHH
Q 017109 352 AQELFERCLEA 362 (377)
Q Consensus 352 A~~~~~~al~~ 362 (377)
+...+++++++
T Consensus 238 ~~~~~~~~~~l 248 (315)
T d2h6fa1 238 YPNLLNQLLDL 248 (315)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66777666664
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.5e-17 Score=137.10 Aligned_cols=194 Identities=11% Similarity=0.063 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+..+...|.+|...|++++|++.|.+++++..+.. +.+..+.++.++|.+|..+|++++|+.++++++++.......
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~- 113 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF- 113 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc-
Confidence 55677789999999999999999999999988763 466778999999999999999999999999999998765332
Q ss_pred ChhHHHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 245 NIDYADTMYHLATVLYL-QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
.....++..+|.++.. .|++++|+.++++++++.+..+ ..+....++.++|.++..+|++++|+..|++++.....
T Consensus 114 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 114 -RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp -HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred -hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 5567888999998865 6999999999999999988765 55667788999999999999999999999999887544
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
... ........+...+.++...|+++.|...+++++++.+.
T Consensus 191 ~~~-~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 191 NRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp CTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred chh-hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 322 22334566788899999999999999999998776544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=8.2e-16 Score=130.29 Aligned_cols=240 Identities=15% Similarity=0.057 Sum_probs=182.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
++..++.....|.++...|++++|+.+++++++.... .+.+....++..+|.++...|++++|+..+++++++....
T Consensus 8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~ 84 (366)
T d1hz4a_ 8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 84 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 3345677777899999999999999999999986321 2223456789999999999999999999999999987765
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
++.+....++..++.++...|++..|...+.+++.+......+..+....++..+|.++...|+++.+...+.++...
T Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 162 (366)
T d1hz4a_ 85 --DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 162 (366)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 356677888999999999999999999999999999988777767777888899999999999999999999999887
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc----------------------------------
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS---------------------------------- 324 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------- 324 (377)
.+.... ......+..++..+...+++.++...+.++.......
T Consensus 163 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (366)
T d1hz4a_ 163 LSSYQP---QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 239 (366)
T ss_dssp TTTSCG---GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hhhhhh---hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 654431 1222334444444555555554444444443332211
Q ss_pred ---cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 325 ---KGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 325 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.....+.....+..+|.++...|++++|...+++++......
T Consensus 240 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (366)
T d1hz4a_ 240 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 284 (366)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence 112233445667788999999999999999999998877653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3e-17 Score=136.55 Aligned_cols=227 Identities=12% Similarity=0.084 Sum_probs=184.0
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
..+.+++|...+.++|+. .|....+++.+|.++...| ++++|+.+++++++. +|....++..+|
T Consensus 55 ~~e~~~~Al~~~~~ai~l-------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~~~ 119 (315)
T d2h6fa1 55 RDERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRR 119 (315)
T ss_dssp HTCCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred hCCchHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHHHh
Confidence 457778888888888864 4456689999999999987 599999999999998 889999999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++..+|++++|+..+.+++++ +|....++.++|.++...|++++|+..+++++++. |....++
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--------p~n~~a~ 183 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--------VRNNSVW 183 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--------CccHHHH
Confidence 9999999999999999999998 34446899999999999999999999999999983 7778899
Q ss_pred HHHHHHHHHcCC------hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 253 YHLATVLYLQGK------ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 253 ~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
.++|.++...+. +++|+..+.+++++. |....++..++.++... ..+++...++.++++....
T Consensus 184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--------P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~-- 252 (315)
T d2h6fa1 184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSH-- 252 (315)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--------CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCc--
Confidence 999999988877 468889999988872 22345577788876544 4688889998888763221
Q ss_pred CCChhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhh
Q 017109 327 WNSLDTVIAAEGLALTLQS--TGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 327 ~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~ 366 (377)
....++..++.+|.. .++.+.+...+++++++.+..
T Consensus 253 ----~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l 290 (315)
T d2h6fa1 253 ----SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 290 (315)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 124566667777754 367778888888888876653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=9.8e-15 Score=122.66 Aligned_cols=228 Identities=7% Similarity=-0.069 Sum_probs=167.8
Q ss_pred hhhhhhhhhhhccccccccchhhhHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH
Q 017109 99 EGENAFGLRKIEDGSVVSNIHTSKWRVFT----------DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168 (377)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 168 (377)
++|.....+++...+ + ...+|+ ..+..+...|++++|+.+++++++. +|....++
T Consensus 46 ~~al~~~~~~l~~~P----~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--------~pk~~~~~ 110 (334)
T d1dcea1 46 ESVLELTSQILGANP----D---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTW 110 (334)
T ss_dssp HHHHHHHHHHHHHCT----T---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHHHCC----C---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 566666666665332 2 233333 3344455566689999999999987 78888889
Q ss_pred HHHHHHHHHhcC--HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 169 NNLAELYRVKKA--FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 169 ~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
..+|.++...++ +++|+..+.+++.. .+. .....+...|.++...|++++|+.++++++.+. |
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~--~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--------p 175 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEA-----DER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--------F 175 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--------C
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhh-----Cch--hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--------C
Confidence 999988888765 89999999999998 222 223345678899999999999999999998873 6
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc----------CCCCCHHH------------HHHHHHHHHHHHHh
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEEN----------GEGDSMTC------------IRRLRYLAQTYVKA 304 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~------------~~~~~~la~~~~~~ 304 (377)
....++.++|.++...|++++|+..+.+++++.+.. ...+.... ...+..++.++...
T Consensus 176 ~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL 255 (334)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 678899999999999999988866665555443321 10111000 00122467777788
Q ss_pred CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 305 NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 305 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
|++.+|+..+.+++.. +|....++..+|.++...|++++|+.++++++++.|
T Consensus 256 ~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 256 QSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred hhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 8888888888877654 577799999999999999999999999999999744
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.4e-13 Score=101.99 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..++.+...|..++..|+|++|+..|++++++ +|....++.++|.++...|++++|+..|++++++
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------ 73 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 73 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence 45677888999999999999999999999998 7888999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--HHcCChhhHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL--YLQGKENDSEALFLESI 276 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al 276 (377)
+|....++..+|.++..+|++++|+..+++++.+. |....+...++.+. ...+.+++|+.......
T Consensus 74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~ 141 (159)
T d1a17a_ 74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 141 (159)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 34446889999999999999999999999999984 44444555555443 33444556655444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.4e-14 Score=108.67 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=110.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
++..|..+...|++++|++.|.++. + ..+.+++++|.+|..+|++++|+..|++++++ +|.
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i~--------~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~ 68 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAVQ--------D---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH 68 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--------S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcC--------C---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence 4467999999999999999887531 1 23467899999999999999999999999998 344
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL--------GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.+.++.++|.++..+|++++|+..|++++...+... .........+++++|.++...|++++|++.+.+++.
T Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999999997643210 011123467889999999999999999999999887
Q ss_pred H
Q 017109 278 I 278 (377)
Q Consensus 278 ~ 278 (377)
+
T Consensus 149 ~ 149 (192)
T d1hh8a_ 149 M 149 (192)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.1e-13 Score=111.73 Aligned_cols=192 Identities=14% Similarity=-0.025 Sum_probs=131.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....+++.+|.++...|++++|+..|++++++ +|....++.++
T Consensus 47 y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 111 (259)
T d1xnfa_ 47 YDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNR 111 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHH
T ss_pred HHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHH
Confidence 345799999999999988653 334578999999999999999999999999998 67778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..++++++. .|.+ ......++..+...+..+.+.......... ....+.....
T Consensus 112 g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 178 (259)
T d1xnfa_ 112 GIALYYGGRDKLAQDDLLAFYQD-----DPND---PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-----DKEQWGWNIV 178 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-----CCCSTHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhh-----cccc---HHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----chhhhhhhHH
Confidence 99999999999999999999987 3333 344556666666666555444443332222 2212211111
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...++. ....+.++.+...+...... .+....++.++|.++..+|++++|+.+|++++..
T Consensus 179 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 179 EFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111111 00111222233333333222 2445567889999999999999999999999865
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.5e-14 Score=97.78 Aligned_cols=112 Identities=19% Similarity=0.269 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.-+...|..++..|++++|+..|+++++. +|....++.++|.+|..+|++++|+..+.+++++ .|+
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~- 69 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPD- 69 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh-----ccc-
Confidence 34567899999999999999999999998 7888999999999999999999999999999998 333
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
...++.++|.++..+|++++|+..|+++++.. |....++..++.+.
T Consensus 70 --~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 70 --WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME 115 (117)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHh
Confidence 35789999999999999999999999999874 44556666666553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8.8e-14 Score=106.33 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
.+.+.|..+...|+|++|++.|.++ .+.+ ..+++++|.+|..+|++++|+..|++++++. |
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--------p 67 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD--------K 67 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc--------CCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--------h
Confidence 4456799999999999999988753 1223 3578999999999999999999999999984 7
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE--------GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
..+.++.++|.++..+|++++|+..|++++...+.... ........++.++|.++...|++++|++.+.+++
T Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77889999999999999999999999999976433211 0112235678899999999999999999999988
Q ss_pred HH
Q 017109 319 HI 320 (377)
Q Consensus 319 ~~ 320 (377)
.+
T Consensus 148 ~~ 149 (192)
T d1hh8a_ 148 SM 149 (192)
T ss_dssp TT
T ss_pred hc
Confidence 76
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.8e-12 Score=91.81 Aligned_cols=105 Identities=24% Similarity=0.320 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+..+..+|..++..|+|++|+.+|.+++++ +|....++.++|.+|..+|++++|+..+++++++..+.. ..
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~ 74 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED 74 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence 456778999999999999999999999998 677888999999999999999999999999999877653 34
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
....+.++..+|.++...+++++|+.+|++++..
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5667889999999999999999999999999876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.2e-12 Score=96.93 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+..+...|..++..|+|++|+.+|++++++ +|....++.++|.++..+|++++|+..|++++++.
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~------ 74 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------ 74 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc------
Confidence 4566778899999999999999999999998 34446899999999999999999999999999984
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHhCChhHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT--YVKANRLTDAETVQRK 316 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~ 316 (377)
|....++..+|.++...|++++|+..+++++.+. ++++. ++..++.+ ....+.+++|+.....
T Consensus 75 --p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~-----p~~~~---~~~~l~~~~~~~~~~~~~~a~~~~~~ 139 (159)
T d1a17a_ 75 --KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD---AKMKYQECNKIVKQKAFERAIAGDEH 139 (159)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHH---HHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 7778899999999999999999999999999972 23332 23334444 3344455566554433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.48 E-value=2.6e-12 Score=94.61 Aligned_cols=137 Identities=13% Similarity=-0.002 Sum_probs=105.1
Q ss_pred hHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC----CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 122 KWRVFTDS--GRDYFLQGKLAEAEKLFLSALQEAKEGFGER----DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 122 ~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
.+.++..+ |..++..|+|++|+..|++++++........ .+..+.++.++|.+|..+|++++|+..+++++.+.
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 34555555 8888899999999999999999976652211 12356789999999999999999999999999998
Q ss_pred HHhcCC---CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 196 QESFGP---EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 196 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
++.... ..+....+++++|.+|..+|++++|+..|++++++..+..+. .+........++..+
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l 151 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRI 151 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHH
Confidence 875332 234556789999999999999999999999999998776544 233334444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.47 E-value=4e-12 Score=93.55 Aligned_cols=122 Identities=19% Similarity=0.135 Sum_probs=99.8
Q ss_pred HHHHHHHH--HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 164 VASACNNL--AELYRVKKAFDKAEPLYLEAIKILQESFGPE----DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 164 ~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.+.++..+ |..++..|+|++|+..|++++++.+...... .+..+.++.++|.+|..+|++++|+..+++++.+.
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 44555555 7788899999999999999999977653211 23456789999999999999999999999999998
Q ss_pred HHhcCCC---ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 238 GRVLGHG---NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 238 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
.+..... .+....+++++|.+|..+|++++|+..|++++++.++..+.
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 7654432 23456688999999999999999999999999999887643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.7e-12 Score=90.24 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
+..+..+|..++..|+|++|+.+|++++++. |....++.++|.+|..+|++++|+..+++++++.+.... .
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~-~ 74 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-D 74 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH-H
Confidence 4567789999999999999999999999984 666789999999999999999999999999999887642 3
Q ss_pred CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 287 SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+.++..+|.++...+++++|+++|++++..
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999999875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.8e-12 Score=95.77 Aligned_cols=132 Identities=15% Similarity=0.100 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC-------HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD-------PHVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
..+..+...|..++..|+|++|+..|++++.......+..+ +....++.++|.+|..+|++++|+.++++++.
T Consensus 11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence 34677889999999999999999999999998544322222 23456778899999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (377)
+ . |....++..+|.++..+|++++|+..|++++++. |....+...++.+....++..+.
T Consensus 91 ~-----~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 91 L-----D---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------PNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp H-----C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred c-----c---ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8 3 3346789999999999999999999999999984 44556677777776665555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-12 Score=90.99 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
-+...|..++..|++++|+..|.++++. +|....++.++|.++..+|++++|+..+.+++.+. |
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p 68 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------P 68 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHhc--------c
Confidence 3567899999999999999999999998 34446899999999999999999999999999984 6
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
....++.++|.++..+|++++|+..+++++++
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 67789999999999999999999999999986
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=1.2e-13 Score=106.88 Aligned_cols=101 Identities=23% Similarity=0.227 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+..+...|..++..|+|++|+..|++++++ +|..+.++.++|.+|...|++++|+..|++++++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence 355778999999999999999999999998 7888999999999999999999999999999987
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+|....++.++|.+|..+|++++|+..|++++.+...
T Consensus 68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3444678999999999999999999999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=5.9e-12 Score=94.00 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC-------chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE-------DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.+..+...|..++..|+|++|+..|++++.+........ ......++.++|.+|..+|++++|+.++++++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 466778899999999999999999999999865432222 1234567889999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH
Q 017109 237 KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA 310 (377)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (377)
. |....++..+|.++..+|++++|+..|++++++ .|+++ .+...++.+....++..+.
T Consensus 92 ~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~---~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 92 D--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNK---AAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred c--------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 4 667889999999999999999999999999997 22333 3455667776665555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=1.5e-13 Score=115.23 Aligned_cols=213 Identities=8% Similarity=-0.090 Sum_probs=156.6
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhhCCCCCHhHHHH-HHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGK--LAEAEKLFLSALQEAKEGFGERDPHVASA-CNNLA 172 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la 172 (377)
|.+.+|...+.+++. .+|....++..+|.++...++ +++|+..++++++. +|....+ ...+|
T Consensus 87 ~~~~~al~~~~~~l~-------~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~ 151 (334)
T d1dcea1 87 ALVKAELGFLESCLR-------VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRF 151 (334)
T ss_dssp HHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--------CchhhhhhhhHHH
Confidence 445566666665553 445666888899988888764 89999999999997 5555554 46788
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh---------cCC
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV---------LGH 243 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~ 243 (377)
.++...+++++|+.++++++.. +|....++.++|.++...|++++|...+++++.+.... .++
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhccccHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Confidence 9999999999999999999887 33446789999999999999888766665555443211 011
Q ss_pred CCh-------------hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH
Q 017109 244 GNI-------------DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA 310 (377)
Q Consensus 244 ~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (377)
.+. .....+..++.++...|++++|+..+.++++ .+|....++..+|.++...|++++|
T Consensus 224 ~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~eA 295 (334)
T d1dcea1 224 NDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEKET 295 (334)
T ss_dssp SCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHHHH
T ss_pred hhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHHHH
Confidence 111 0111222456667777788888887777765 4678888999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC
Q 017109 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG 347 (377)
Q Consensus 311 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 347 (377)
+.+|++++++ +|.....+..++..+....
T Consensus 296 ~~~~~~ai~l--------dP~~~~y~~~L~~~~~~e~ 324 (334)
T d1dcea1 296 LQYFSTLKAV--------DPMRAAYLDDLRSKFLLEN 324 (334)
T ss_dssp HHHHHHHHHH--------CGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------CcccHHHHHHHHHHHhHhh
Confidence 9999999998 4666778888877776533
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.42 E-value=1.3e-12 Score=90.16 Aligned_cols=93 Identities=17% Similarity=0.036 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.+.+|..+...|++++|+..+++++.. +|....++..+|.++...|++++|+.++++++++ +|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 82 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 82 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence 567899999999999999999999988 7788999999999999999999999999999998 344
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 234 (377)
...++..+|.+|..+|++++|++.+++.+
T Consensus 83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 83 DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 46899999999999999999999999875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=9.9e-14 Score=122.49 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|+.+.++..+|.++..+|++.+| |++++.. +|..+..+...+.+.. ..|..+++.+++..+...
T Consensus 17 p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k~~~--- 80 (497)
T d1ya0a1 17 ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWN--HAFKNQITTLQGQAKNRA--- 80 (497)
T ss_dssp GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHSCSS---
T ss_pred CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHH--HHHHHHHHHHHHhccccc---
Confidence 33445667788888888888776 7777765 5665555433332221 123344444444332100
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.++.. ......++.++...+.|+.|+..+++++.+. +.....+.++|.++...|++++|...+.+++...
T Consensus 81 ~~~~~--~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 81 NPNRS--EVQANLSLFLEAASGFYTQLLQELCTVFNVD--------LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp CTTTT--HHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------CCHHHHHH
T ss_pred CccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 01111 1112223444445555555555555555442 4455667777777777777777777777776542
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
. ..++.++|.++...|++++|+.+|++++++. |....++..+|.++...|+..+|+.+|.++
T Consensus 151 ~----------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 151 C----------QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp H----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 2346677777777777777777777777773 444677777777777777777777777777
Q ss_pred HH
Q 017109 360 LE 361 (377)
Q Consensus 360 l~ 361 (377)
+.
T Consensus 213 l~ 214 (497)
T d1ya0a1 213 IA 214 (497)
T ss_dssp HS
T ss_pred Hh
Confidence 65
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.41 E-value=2.6e-12 Score=94.15 Aligned_cols=126 Identities=21% Similarity=0.123 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH--------hHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP--------HVASACNNLAELYRVKKAFDKAEPLYLEA 191 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 191 (377)
...+..+...|..++..|+|.+|+..|.+++.........+.. ....++.++|.+|..+|++++|+.+++++
T Consensus 14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a 93 (153)
T d2fbna1 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 93 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence 3456678889999999999999999999999876544322222 23467889999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 192 IKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
+++ +|....+++.+|.++..+|++++|+..|++++++. |....+...++.+..+
T Consensus 94 l~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 94 LKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHH
T ss_pred ccc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Confidence 998 34446899999999999999999999999999994 5555556666665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.40 E-value=8.4e-12 Score=93.02 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC-------CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER-------DPHVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
..+..+...|..++..|+|.+|+..|.+++.......... .+....++.++|.+|..+|++++|+.++++++.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 4567888999999999999999999999998764432221 123456788899999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh-HHHHH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND-SEALF 272 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 272 (377)
+ +|....+++.+|.++..+|++++|+..|++++.+. |....+...++.+....+.+.+ ..+.+
T Consensus 93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~~~~~~~~e~~kk~~ 156 (168)
T d1kt1a1 93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------PQNKAARLQIFMCQKKAKEHNERDRRTY 156 (168)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8 33446889999999999999999999999998873 5555667777777666555443 33344
Q ss_pred HHHH
Q 017109 273 LESI 276 (377)
Q Consensus 273 ~~al 276 (377)
.+..
T Consensus 157 ~~~f 160 (168)
T d1kt1a1 157 ANMF 160 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=2.6e-12 Score=99.18 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+..+...|..++..|+|++|+.+|++++++ .|+ ...++.++|.+|...|++++|+.+|++++++.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~---~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~------- 68 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD------- 68 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-------
Confidence 455778999999999999999999999998 333 46899999999999999999999999999873
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
|....++.++|.++..+|++++|+..|++++++.+...
T Consensus 69 -p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 69 -GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 77788999999999999999999999999999987654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.37 E-value=7.8e-12 Score=93.39 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC--------CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG--------ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
.+..+...|..++..|+|.+|+..|.++++....... ...|....++.++|.++...|++++|+..+.++++
T Consensus 26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 105 (169)
T d1ihga1 26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 105 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence 3455677899999999999999999999986543211 11356778899999999999999999999999998
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND 267 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (377)
+ +|....+++.+|.++..+|++++|+..|++++++. |....+...++.+........+
T Consensus 106 ~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--------p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 106 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred h--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHH
Confidence 7 34446899999999999999999999999999984 4445566667766655444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.37 E-value=2.4e-12 Score=88.80 Aligned_cols=95 Identities=12% Similarity=-0.089 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
...+.+|.++...|++++|+..+++++.. . |....++..+|.++...|++++|+.++++++++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------- 80 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQK-----E---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------- 80 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhccc-----c---cccchhhhhhhhhhhhhhhHHHhhcccccccccc--------
Confidence 34578899999999999999999999998 3 3346899999999999999999999999999984
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
|....++..+|.+|...|++++|++.+++.+
T Consensus 81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 81 PKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7778899999999999999999999999875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.36 E-value=2.4e-11 Score=90.43 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC-------chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE-------DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.+..+...|..++..|+|.+|+..|.+++.......... .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 466778899999999999999999999998765432221 2345677889999999999999999999999988
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH-HHHHHH
Q 017109 237 KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD-AETVQR 315 (377)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~ 315 (377)
. |....+++.+|.++..+|++++|+..|++++++ .|++ ..+...++.+....+++.+ ....|.
T Consensus 94 ~--------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n---~~~~~~l~~~~~~~~~~~e~~kk~~~ 157 (168)
T d1kt1a1 94 D--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQN---KAARLQIFMCQKKAKEHNERDRRTYA 157 (168)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3 677889999999999999999999999999986 2222 3445566776665555443 334444
Q ss_pred HHH
Q 017109 316 KIL 318 (377)
Q Consensus 316 ~al 318 (377)
+..
T Consensus 158 ~~f 160 (168)
T d1kt1a1 158 NMF 160 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.35 E-value=1.1e-11 Score=90.69 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED--------IRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
.+..+...|..++..|+|.+|+..|.+++.+.......+. +....++.++|.+|..+|++++|+.+++++++
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 4556778999999999999999999999987654322221 12346788999999999999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 236 IKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+. |....+++.+|.++..+|++++|+..|++++++
T Consensus 96 ~~--------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 96 ID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cc--------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 84 677889999999999999999999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.33 E-value=1.9e-11 Score=91.26 Aligned_cols=128 Identities=14% Similarity=0.079 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG--------PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..+...|..+...|+|.+|+..|.+++........ ...+....++.++|.++..+|++++|+..+.+++++.
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 107 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 107 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence 34567788999999999999999999986543211 1145667889999999999999999999999999873
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH
Q 017109 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 309 (377)
|..+.+++.+|.++..+|++++|+..|++++++. ++.. .+...++.+........+
T Consensus 108 --------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-----p~n~---~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 108 --------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PEDK---AIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHHHHHH
T ss_pred --------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999982 2232 335556666655544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.9e-12 Score=88.73 Aligned_cols=112 Identities=14% Similarity=-0.028 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh---cCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK---KAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..++..+...+++++|++.|++++.+ +|....+++++|.++... +++++|+..+++++.. . ..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-----~-~~ 68 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----G-SK 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----S-CH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-----c-CC
Confidence 35677888999999999999999998 788899999999999864 4556788888888764 1 23
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY 260 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 260 (377)
+....+++++|.+|...|++++|+.+|++++++. |....+...++.+..
T Consensus 69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--------P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--------PQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHH
Confidence 4446789999999999999999999999999984 555566666665544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=8.6e-10 Score=90.74 Aligned_cols=194 Identities=10% Similarity=0.045 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 017109 138 KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFY 217 (377)
Q Consensus 138 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 217 (377)
..++|...|+++++. ..|.....+...+.++...|++++|...|++++.. .+.+. ..++...+...
T Consensus 79 ~~~~a~~i~~ral~~-------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~~--~~~w~~~~~~~ 144 (308)
T d2onda1 79 FSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFA 144 (308)
T ss_dssp HHHHHHHHHHHHHTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCT--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCCh--HHHHHHHHHHH
Confidence 345566666666542 23455667888899999999999999999999875 22232 35678888899
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL-YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
...|+++.|...|++++... |.....+...+... ...|+.+.|...++++++..+. . ...+..
T Consensus 145 ~~~~~~~~ar~i~~~al~~~--------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-----~---~~~w~~ 208 (308)
T d2onda1 145 RRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----I---PEYVLA 208 (308)
T ss_dssp HHHHCHHHHHHHHHHHHTST--------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----C---HHHHHH
T ss_pred HHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-----h---HHHHHH
Confidence 99999999999999998764 33445566667664 4468999999999999986332 2 345677
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSL-DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.+..+...|++++|..+|++++.... .++ .....+..........|+.+.+...++++.++.++.
T Consensus 209 y~~~~~~~g~~~~aR~~fe~ai~~~~-----~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 209 YIDYLSHLNEDNNTRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 88899999999999999999987531 122 224566677777788899999999999998887654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=5.2e-11 Score=82.85 Aligned_cols=113 Identities=14% Similarity=-0.002 Sum_probs=89.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHHHHcCCCCC
Q 017109 211 HNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK---ENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 211 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.+++..+...+++++|++.|++++.+. |....+++++|.++...++ +++|+..+++++.. ...
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~ 68 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSK 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCC
Confidence 356778889999999999999999984 6778899999999987554 45688888888763 112
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS 345 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 345 (377)
+....+++++|.+|...|++++|+++|++++++. |....+...++.+..+
T Consensus 69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--------P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--------PQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHH
Confidence 4456688999999999999999999999999983 4445666666555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.9e-10 Score=76.24 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+.-++.+|.++...|+|++|+.++++|+++..... ...+..+.++.++|.++...|++++|+.++++++++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~------- 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------- 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-------
Confidence 45578999999999999999999999999877653 3345667899999999999999999999999999994
Q ss_pred ChhHHHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYL 261 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~ 261 (377)
|....++.+++.+...
T Consensus 77 -P~~~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 77 -PEHQRANGNLKYFEYI 92 (95)
T ss_dssp -TTCHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHH
Confidence 6666788888766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.17 E-value=4.6e-09 Score=84.28 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHHHhc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV----KKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~ 199 (377)
.+++.+|..+...+++.+|+++|+++.+. ....++..||.+|.. ..++..|..+++.+...
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----- 67 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----- 67 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----
Confidence 57899999999999999999999999764 235688899999987 66889999998887764
Q ss_pred CCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHH-----------Hh--cCCCC-------------hhHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKG-----------RV--LGHGN-------------IDYA 249 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~-----------~~--~~~~~-------------~~~~ 249 (377)
.++ .+...+|.++.. .++.+.|...++++...-. .. ..... ....
T Consensus 68 --~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 142 (265)
T d1ouva_ 68 --NYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG 142 (265)
T ss_dssp --TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred --ccc---chhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccccc
Confidence 222 455666666654 4567778777777654210 00 00000 1123
Q ss_pred HHHHHHHHHHHHc----CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHH
Q 017109 250 DTMYHLATVLYLQ----GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIM 321 (377)
Q Consensus 250 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 321 (377)
..+..+|.++... .+...+..+++.+.+. + ...+..++|.+|.. ..++++|+.+|+++.+.
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~- 211 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL----K------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL- 211 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-
T ss_pred chhhhhhhhhccCCCcccccccchhhhhccccc----c------ccccccchhhhcccCcccccchhhhhhhHhhhhcc-
Confidence 4556677777653 3334444444444432 1 13457889999887 67899999999998764
Q ss_pred HhccCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQS----TGSLMEAQELFERCLEA 362 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 362 (377)
.+ ..++..||.+|.. ..++++|..+|+++.+.
T Consensus 212 ------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 212 ------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp ------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred ------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 12 6788999999986 45899999999999775
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.9e-10 Score=101.23 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=84.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
+.+....+.|+.|+..+.+++++ ++.....+.++|..+...|++++|...+.+++... + ..+
T Consensus 93 ~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~--~~~ 154 (497)
T d1ya0a1 93 LFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------C--QHC 154 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------------------------------------CCHHHHHH--------H--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------H--HHH
Confidence 44444455566666666555544 56677788899999999999999999998888752 2 357
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
+.++|.++...|++++|+.+|++|+++. |....+++++|.++...|++.+|+.+|.+++.+ + +.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~--------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-------~-~~ 218 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------K-FP 218 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------S-BC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------C-CC
Confidence 8889999999999999999999999885 777888999999999999999999999999875 1 12
Q ss_pred HHHHHHHHHHHHHHhCC
Q 017109 290 CIRRLRYLAQTYVKANR 306 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~ 306 (377)
...++.+|+.++....+
T Consensus 219 ~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 219 FPAASTNLQKALSKALE 235 (497)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 34567788877766543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=1.9e-09 Score=88.65 Aligned_cols=186 Identities=15% Similarity=0.032 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHH-------Hh-------cCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYR-------VK-------KAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-------~~-------g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+.+...|++|+... |....++...+.... .. +..++|...|+++++. ..|
T Consensus 32 ~~Rv~~vyerAl~~~--------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-------~~p 96 (308)
T d2onda1 32 TKRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLK 96 (308)
T ss_dssp HHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTT
T ss_pred HHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-------cCC
Confidence 455777889998863 233334444433322 22 3345666666666543 122
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
.....+...+..+..+|++++|...|++++... + .....++..++......|+++.|...|+++++..+
T Consensus 97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~--~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~---- 165 (308)
T d2onda1 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----D--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR---- 165 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----S--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-----c--CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----
Confidence 234578888999999999999999999998753 2 22345677888899999999999999999987522
Q ss_pred CCCHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.. ...+...|.... ..|+.+.|...|++++... |.....+...+..+...|++++|..+|++++..
T Consensus 166 -~~---~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 166 -TR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp -CC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred -Cc---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 22 233445565543 4589999999999999875 333678888999999999999999999999873
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=4.7e-10 Score=74.33 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
++-++.+|.++...|+|++|+.+|++|+++..... ...+..+.++.++|.++...|++++|+.++++++++ .|+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcC
Confidence 45578999999999999999999999999876542 223467899999999999999999999999999998 455
Q ss_pred chhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLV 219 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~ 219 (377)
+ ..++.+++.+...
T Consensus 79 ~---~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 79 H---QRANGNLKYFEYI 92 (95)
T ss_dssp C---HHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHH
Confidence 5 4677887766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.13 E-value=1e-10 Score=84.43 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=82.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh----------cCHhHHHHHHHHHHHHHHHhcCC
Q 017109 132 DYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----------KAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 132 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+.+.+.|++|+..|++++++ +|..+.++.++|.++... +.+++|+..|++++++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------- 70 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------- 70 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence 356677899999999999998 899999999999999855 4457899999999987
Q ss_pred CchhHHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRK-----------LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
+|....+++++|.+|..+|+ +++|..+|++++++. |.....+..++.+.
T Consensus 71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--------P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLEMTA 130 (145)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--------CCHHHHHHHHHHHH
Confidence 34446789999999988764 678888888888874 55556666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.03 E-value=4e-10 Score=81.23 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=72.9
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHHHHHhcCC
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ----------RKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+.+.+.|++|+..|++++++ +|..+.++.++|.++... +.+++|+..|++++++.
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~------ 71 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------ 71 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc------
Confidence 456778899999999999998 344468999999998854 45678999999999884
Q ss_pred CChhHHHHHHHHHHHHHHcCC-----------hhhHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGK-----------ENDSEALFLESIRI 278 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~ 278 (377)
|....+++++|.+|..+|+ +++|..+|++++++
T Consensus 72 --P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 72 --PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 7778899999999988764 57788888888877
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=8.4e-08 Score=71.25 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=96.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC--------------CHhHHHHHHHHHHHHHHhcCHhHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER--------------DPHVASACNNLAELYRVKKAFDKA 184 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A 184 (377)
+....+.+...|......|++++|+..|.+|+.++....-.+ .+....++..++.++...|++++|
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 445678889999999999999999999999998743211000 123457889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 185 EPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 185 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
+.++++++.. +|....++..++.++...|++.+|+..|+++.....+-.|.
T Consensus 87 l~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~ 137 (179)
T d2ff4a2 87 IAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 137 (179)
T ss_dssp HHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999998 44446899999999999999999999999998887654443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.75 E-value=6.8e-08 Score=71.76 Aligned_cols=115 Identities=7% Similarity=-0.094 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD--------------SMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
.....+...|......|++++|...|.+++.+.+.....+ ......++..++.++...|++++|+.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 3467788899999999999999999999998754321111 12345678899999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
++++++.. +|....++..++.++...|++.+|+..|+++.....+-+|.
T Consensus 89 ~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~ 137 (179)
T d2ff4a2 89 ELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 137 (179)
T ss_dssp HHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998 35668899999999999999999999999999887766554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.71 E-value=1.3e-08 Score=80.65 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=100.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
+.-.+..|++++|+..++++++. +|....++..++.++...|++++|+..+++++++ .|.....
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~ 66 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPG 66 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHH
Confidence 34456789999999999999987 8999999999999999999999999999999998 4444567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
+..++.++...+..+++.....+.. ....+.....+...+.++...|++++|...++++.+..+.
T Consensus 67 ~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 67 ASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 7777877766655554433222111 1123555667778899999999999999999999887544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.63 E-value=2.4e-08 Score=79.18 Aligned_cols=127 Identities=10% Similarity=0.025 Sum_probs=97.5
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.-....|++++|+..++++++. +|.....+..++.++...|++++|+..+++++++. |....+.
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--------P~~~~~~ 67 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--------PEYLPGA 67 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------GGGHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCcHHHH
Confidence 3456789999999999999997 44456899999999999999999999999999984 7777788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
..++.++...+..+++.....+.. ....+.....+...+.++...|++++|.+.++++.+...
T Consensus 68 ~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 68 SQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 888888766555444333222111 112344455667789999999999999999999988753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.58 E-value=2.9e-06 Score=67.37 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHh
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 240 (377)
+.+++++|..+...+++++|+++|+++.+. .+ ..++..||.+|.. ..++..|..+++.+....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---
Confidence 468899999999999999999999999764 23 4678999999997 678999999998876541
Q ss_pred cCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHH-----------HH--cCCCCCH-------------HH
Q 017109 241 LGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRIL-----------EE--NGEGDSM-------------TC 290 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~-----------~~--~~~~~~~-------------~~ 290 (377)
...+...+|.++.. .++.+.|...++++.+.- .. ....... ..
T Consensus 69 -------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 141 (265)
T d1ouva_ 69 -------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 141 (265)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccc
Confidence 23445566666654 345666777776654320 00 0000000 11
Q ss_pred HHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 017109 291 IRRLRYLAQTYVKA----NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS----TGSLMEAQELFERCLE 361 (377)
Q Consensus 291 ~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 361 (377)
...+..+|.++... .+...+..+++.+.+. ....+...+|.+|.. ..++++|+.+|+++.+
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~ 210 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 210 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccCcccccchhhhhhhHhhhhc
Confidence 22345667777653 3344555555554432 126788899999987 6789999999999976
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.15 E-value=1.7e-05 Score=55.39 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
.|+++|+.+|+++.+. . + ..+...++. ....++++|+.+++++.+. .+ ..+++.+|.+
T Consensus 7 kd~~~A~~~~~kaa~~------g-~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~~ 64 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL------N-E---MFGCLSLVS--NSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDF 64 (133)
T ss_dssp HHHHHHHHHHHHHHHT------T-C---TTHHHHHHT--CTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC------C-C---hhhhhhhcc--ccccCHHHHHHHHhhhhcc-------cc---hhhhhhHHHh
Confidence 3788999999999864 2 2 233445553 3457899999999998774 23 3678899999
Q ss_pred HHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHH
Q 017109 217 YLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRI 278 (377)
Q Consensus 217 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 278 (377)
|.. ..++++|..+|+++.+. ..+.+...||.+|.. ..++.+|..+|+++.+.
T Consensus 65 y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 65 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 886 56789999999998765 225678899999887 46899999999998874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.08 E-value=2.6e-05 Score=54.37 Aligned_cols=110 Identities=12% Similarity=0.126 Sum_probs=82.8
Q ss_pred cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017109 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV 258 (377)
Q Consensus 179 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 258 (377)
.|+++|+.+|+++.+. + ++ .++..++. ....++++|+.+++++.+. ....+.+.+|.+
T Consensus 7 kd~~~A~~~~~kaa~~-----g--~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~ 64 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-----N--EM---FGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 64 (133)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CT---THHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC-----C--Ch---hhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHh
Confidence 4788999999999875 2 22 34455553 3457899999999998654 235678899999
Q ss_pred HHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q 017109 259 LYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHI 320 (377)
Q Consensus 259 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 320 (377)
|.. ..++++|+++|+++.+. .+ ..+...||.+|.. ..++.+|+.+|+++.+.
T Consensus 65 y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 65 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 886 45789999999999764 22 2456789999887 46899999999998764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=0.00037 Score=46.58 Aligned_cols=64 Identities=6% Similarity=-0.104 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQG---KLAEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
..+.+..|.++.... +.++|+.++++++.. +| ....+++.||..|...|+|++|..++++++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 578888999988664 556888888888764 44 45689999999999999999999999999998
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.52 E-value=0.00055 Score=45.75 Aligned_cols=66 Identities=11% Similarity=-0.087 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHh---cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVK---KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 165 ~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..+.++.|.++... .+.++|+..++++++. +......+++++|..|.+.|+|++|..++++++++.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 57888888888755 4556788888877764 222345789999999999999999999999999994
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=90.33 E-value=2.4 Score=30.93 Aligned_cols=186 Identities=10% Similarity=0.018 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
....+|.+....|+|++..+..++++++......+-+ ..=.+.++.+|-. .|....+...+... + .+. ..+
T Consensus 6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt---~eERnLLsvayKn~i~~~R~s~R~i~~i-e--~k~--~~~ 77 (220)
T d2o8pa1 6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFD---DEERHLLTLCIKHKISDYRTMTSQVLQE-Q--TKQ--LNN 77 (220)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHS--CSC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCC---HHHHHHHHHHHHHHHhhhHHHHHHHHHH-H--Hhh--ccc
Confidence 3456789999999999999999999987542211111 1122223333321 13333344333321 1 111 111
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-----HhCChhHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV-----KANRLTDAETVQRKILHI 320 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~ 320 (377)
..... +..-|. ..--.+-...+...+.+......++....+..+-..|..|. ..|..++|...|++|.++
T Consensus 78 ~~~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i 152 (220)
T d2o8pa1 78 DELVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL 152 (220)
T ss_dssp HHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred hhHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 21111 111111 11123344556666666666544332223333334455543 457889999999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHh
Q 017109 321 MESSKGWNSLDTVIAAEGLALTL-QSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~ 365 (377)
......+.||.......+.+..+ .-.++.++|.+..++|.+.+++
T Consensus 153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fde 198 (220)
T d2o8pa1 153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL 198 (220)
T ss_dssp HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 98888888887767777776655 5679999999999988554443
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.92 E-value=2.7 Score=30.93 Aligned_cols=182 Identities=10% Similarity=0.003 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
-+..++.+..+.++|++...+.+++++. ++. ....=.+.++.+|-. .|....+...+....+.. ...+..
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~-----~~e--Lt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~--~~~~~~ 75 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQ-----GAE--LSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT--EGAEKK 75 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhc-----CCC--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--cCcchh
Confidence 3567888999999999999999998876 211 111222233333321 233334444443221110 001111
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHh----------CChhHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE---GDSMTCIRRLRYLAQTYVKA----------NRLTDAET 312 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~----------g~~~~A~~ 312 (377)
.... .-|. ..=-++=...+...+.+...... .+....+..+...|..|.-. .-.+.|..
T Consensus 76 ~~~i-------~~yk-~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~ 147 (230)
T d2o02a1 76 QQMA-------REYR-EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQ 147 (230)
T ss_dssp HHHH-------HHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHH-------HHHH-HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1111 1111 01112233444444444433211 12222333333445555432 12357999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHh
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTL-QSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.|++|+++......+.||.......+.+..+ .-.|+.++|.+..+++++-.-.
T Consensus 148 aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~ 201 (230)
T d2o02a1 148 AYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA 201 (230)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999998888888997777777666655 5679999999999998876543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.59 E-value=4.7 Score=33.17 Aligned_cols=199 Identities=12% Similarity=0.000 Sum_probs=116.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
+..-....+.+.|...+....... .............++......+..+.+.......... . .... ..
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~--~~ 288 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-----S-QSTS--LI 288 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-----C-CCHH--HH
T ss_pred HHHHHhccChhHHHHHHHhhhhcc----cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-----c-cchH--HH
Confidence 333344456777776666544321 1112233334444444555556667776666554432 1 2222 12
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH--------HHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI--------LEE 281 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~ 281 (377)
. .++......+++..+...+... ...........+-+|..+...|+.++|..+|..+... ...
T Consensus 289 ~-w~~~~al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~ 359 (450)
T d1qsaa1 289 E-RRVRMALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQR 359 (450)
T ss_dssp H-HHHHHHHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred H-HHHHHHHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHH
Confidence 2 2233345668888877776543 1222445778899999999999999999999886541 111
Q ss_pred cCCC------------CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCH
Q 017109 282 NGEG------------DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSL 349 (377)
Q Consensus 282 ~~~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 349 (377)
.+.+ ........-...+..+...|+...|...+..++.. . + ..-...++.+..+.|.+
T Consensus 360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~----~---~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---K----S---KTEQAQLARYAFNNQWW 429 (450)
T ss_dssp TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----C---HHHHHHHHHHHHHTTCH
T ss_pred cCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---C----C---HHHHHHHHHHHHHCCCh
Confidence 1111 01111112234567788899999999888766431 1 1 34556788999999999
Q ss_pred HHHHHHHHHH
Q 017109 350 MEAQELFERC 359 (377)
Q Consensus 350 ~~A~~~~~~a 359 (377)
+.|+....++
T Consensus 430 ~~aI~a~~~~ 439 (450)
T d1qsaa1 430 DLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHHHH
Confidence 9999776654
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=89.55 E-value=3 Score=30.84 Aligned_cols=184 Identities=10% Similarity=-0.017 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
-+..+|.+..+.++|++...+.+++++... +++ ....=.+.++.+|-. .|....+...+....+... ...+
T Consensus 6 ~lv~~AklaeqaeRy~dm~~~mk~v~~~~~---~~~--Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~---~~~~ 77 (236)
T d1o9da_ 6 ENVYMAKLAEQAERYEEMVEFMEKVSNSLG---SEE--LTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE---SRGN 77 (236)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTCS---SSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcC---CCC--CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH---ccCC
Confidence 456788888899999999999999987511 111 111122223333321 2333344444433222111 1111
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHh-----C-----ChhHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE---GDSMTCIRRLRYLAQTYVKA-----N-----RLTDAET 312 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 312 (377)
..... +..-|. ..=-++=...+..++.+...... .+....+..+...|..|.-. | -.+.|..
T Consensus 78 ~~~~~----~i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~ 152 (236)
T d1o9da_ 78 EEHVN----SIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT 152 (236)
T ss_dssp HHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHH
Confidence 11111 111111 00112223344444444332210 11222333333445554422 2 2467899
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQ-STGSLMEAQELFERCLEAR 363 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 363 (377)
.|+.|.++......+.||.......+.+..+. -.|+.++|....+++++-.
T Consensus 153 aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a 204 (236)
T d1o9da_ 153 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 204 (236)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999988888999987777777777765 4599999998888877644
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.06 E-value=1.2 Score=26.29 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 289 TCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
+.+-.+...|+-+...|+|++|+++++++.........
T Consensus 6 N~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k 43 (83)
T d2crba1 6 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 43 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45556777889999999999999999999988765443
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.47 E-value=1.5 Score=25.88 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
-..+..+...+..+...|.|++|+++.++|.....+.
T Consensus 5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA 41 (83)
T d2crba1 5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999999999999999999876654
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=82.89 E-value=6.8 Score=28.44 Aligned_cols=184 Identities=8% Similarity=-0.007 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
....+|.+.-+.|+|++..++.++.+++..... ......=...+..+|-. .|....+...+... + ++. . .+
T Consensus 6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n---~eLt~eERnLLsvayKn~i~~~R~s~R~i~~i-e--~k~-~-~~ 77 (220)
T d2o8pa1 6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFEN---SEFDDEERHLLTLCIKHKISDYRTMTSQVLQE-Q--TKQ-L-NN 77 (220)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHS-C-SC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccC---ccCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH-H--Hhh-c-cc
Confidence 345678899999999999999999998854221 11122223333433322 23333444333321 1 111 1 12
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HcCChhhHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY-----LQGKENDSEALFLESIRI 278 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~ 278 (377)
.... .+..-|. ..--.+=...+...+.+......++.......+-..|..|. ..|.-++|...|++|..+
T Consensus 78 ~~~~----~~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i 152 (220)
T d2o8pa1 78 DELV----KICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL 152 (220)
T ss_dssp HHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred hhHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1111 1111111 11123344555566666655444322222223333454443 467889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHH-HHhCChhHHHHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTY-VKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 321 (377)
......+.+|.......+.+..+ .-.++.++|.+..+.|.+.+
T Consensus 153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~f 196 (220)
T d2o8pa1 153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 196 (220)
T ss_dssp HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 88766666676666666666654 45799999999998885443
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.99 E-value=13 Score=30.35 Aligned_cols=216 Identities=11% Similarity=-0.027 Sum_probs=115.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH---------------HHHHHHHHHHHHHhcCHh
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV---------------ASACNNLAELYRVKKAFD 182 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~g~~~ 182 (377)
..|.....-+..+......|+..+|...+...... +...|.. ...+..........|++.
T Consensus 97 ~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-----~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~ 171 (450)
T d1qsaa1 97 EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-----GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTG 171 (450)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-----SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Confidence 33445566667778888899998888776655421 1111111 112223344455556665
Q ss_pred HHHHHHHHH-----------HHHHH---------HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 183 KAEPLYLEA-----------IKILQ---------ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 183 ~A~~~~~~a-----------l~~~~---------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
.|....... +.+.. ... +..+ ........+..-....+.+.|...+....... .
T Consensus 172 ~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~-~~~~-~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~----~ 245 (450)
T d1qsaa1 172 LVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTT-GATD-FTRQMAAVAFASVARQDAENARLMIPSLAQAQ----Q 245 (450)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHS-CCCH-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT----T
T ss_pred hHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcC-CCCh-hhhHHHHHHHHHHhccChhHHHHHHHhhhhcc----c
Confidence 555444321 11110 001 1111 12223334444445567777777776654332 1
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
............++......+..+.+.......... ........ .++......+++..+...+...-
T Consensus 246 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~---w~~~~al~~~~~~~~~~~~~~l~---- 312 (450)
T d1qsaa1 246 LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLIE---RRVRMALGTGDRRGLNTWLARLP---- 312 (450)
T ss_dssp CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHHH---HHHHHHHHHTCHHHHHHHHHHSC----
T ss_pred ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc------ccchHHHH---HHHHHHHHcCChHHHHHHHHhcC----
Confidence 111223333344444445566677777766655432 12222222 22333456788888777765431
Q ss_pred hccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 323 SSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..........+.+|+.+...|+.++|..+|..+..
T Consensus 313 ----~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 313 ----MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp ----TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 12233467889999999999999999999998754
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