Citrus Sinensis ID: 017128

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MAHRKARERDMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIKLLSAVGSLGA
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEccccccccccccccEEEcccccccccccccccEEEEEcccccHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHcccccccccEEEEccEEEEEEEccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccHHHHHHHHHccHHHHccccEEEEcccccccccccEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccc
cccccccHHHHHHHHccHHEEEEEEEccccHHHHccEEEEEEEEEEEccccccccccEEEEEEEEEcccccccccccEEEEEEHHHccccHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHccccccccEEcccccEEEEEcccccccccccEEEEEEEccccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccHHHHHHcccHHHHHcEEEEEEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccEEEcccccccc
MAHRKARERDMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDisgvpfgsrlaslnhhagslhfspgadlsrtvvmiPVRELNISFVTEYvsrkhplggmlflLPEIFrlenggggkdvreKEVVKNVLLELEKLLVhaklpypvyfafendEIDAVLDdvkkndatgqpatattggyklvipiaepkkvasptiTNIQGWLQglkadgdanqlptIAIVASydtfgaapalsvgsdsngsGVVALLEVARLFSLLysnpktrgryNILFGltsggpynyngthkWLRSFDQRLRESIDYAICLNSvgswnnelwihvskppenaYIKQIFEGFTNVAEELGFKVglkhkkinisnPRVIKLLSAVGSLGA
mahrkarerdmlDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLEnggggkdvreKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDAtgqpatattggyklVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLysnpktrgrYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLkhkkinisnprviKLLSAVGSLGA
MAHRKARERDMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVRekevvknvllelekllvhaklPYPVYFAFENDEIDAVLDDVKKNDatgqpatattggYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALsvgsdsngsgvvALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIKLLSAVGSLGA
***********LDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKND****PATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIKLLSA******
*************SVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLE**************KNVLLELEKLLVHAKLPYPVYFAFENDEIDA*****************TTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKA*GDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIKLLSAVGS***
*********DMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIKLLSAVGSLGA
********RDMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLE******DVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIKLLSA******
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAHRKARERDMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIKLLSAVGSLGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
Q5ZJH2 562 Nicalin OS=Gallus gallus yes no 0.848 0.567 0.347 1e-43
Q6NZ07 572 Nicalin-1 OS=Danio rerio yes no 0.824 0.541 0.349 1e-43
Q5XIA1 563 Nicalin OS=Rattus norvegi yes no 0.800 0.534 0.345 3e-43
Q8VCM8 563 Nicalin OS=Mus musculus G yes no 0.800 0.534 0.351 5e-43
Q969V3 563 Nicalin OS=Homo sapiens G yes no 0.803 0.536 0.340 5e-42
>sp|Q5ZJH2|NCLN_CHICK Nicalin OS=Gallus gallus GN=NCLN PE=2 SV=1 Back     alignment and function desciption
 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 194/357 (54%), Gaps = 38/357 (10%)

Query: 22  VFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGAD-LSRTVV 80
           V +L+      +AA    VYR+ QY++ G P+G+R A LN  A ++     AD LSR  V
Sbjct: 29  VLLLLGPPPAAEAAHESTVYRMQQYELGGQPYGTRSAVLNTEARTVE----ADVLSRRCV 84

Query: 81  MIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKL 140
           M+  R ++ S+     + +   G ++ +LP                ++VVK   +E+E  
Sbjct: 85  MM--RLVDFSYEQYQKALRQSAGAVVIILPRSI---------SSVPQDVVKQ-FMEIEPE 132

Query: 141 LVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEP 192
           ++  +   PVYFA E+DE+ ++ +  +   A+   A        TAT  G+++V   A+ 
Sbjct: 133 MLAMETIVPVYFAVEDDELLSIYEQTRAASASQGSASAAEVLLHTATANGFQMVTSGAQS 192

Query: 193 KKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALL 252
           K +    I +++G L GL  +     LPT+ IVA YD+FG AP LS G+DSNGSGV  LL
Sbjct: 193 KAIHDWLIPSVEGRLTGLGGE----DLPTVVIVAHYDSFGVAPWLSHGADSNGSGVSVLL 248

Query: 253 EVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAI 307
           E+ARLFS LY+  +T   YN+LF  + GG +NY GT +WL  + D      L++++ + +
Sbjct: 249 ELARLFSRLYTYRRTHAGYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVL 308

Query: 308 CLNSVGSWNNELWIHVSKPPENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISN 361
           CL+++G   N L +HVSKPP+   ++  F  E    VA +    K  + HKKIN++ 
Sbjct: 309 CLDTLGR-GNSLHLHVSKPPKEGTLQHAFLRELEMVVASQFPEVKFSMVHKKINLAE 364
May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.
Gallus gallus (taxid: 9031)
>sp|Q6NZ07|NCLN_DANRE Nicalin-1 OS=Danio rerio GN=ncl1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIA1|NCLN_RAT Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1 Back     alignment and function description
>sp|Q8VCM8|NCLN_MOUSE Nicalin OS=Mus musculus GN=Ncln PE=2 SV=2 Back     alignment and function description
>sp|Q969V3|NCLN_HUMAN Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
356539234 562 PREDICTED: nicalin-1-like [Glycine max] 0.962 0.644 0.792 1e-170
171451996 567 hypothetical protein [Bruguiera gymnorhi 0.968 0.641 0.758 1e-170
356544744 552 PREDICTED: nicalin-like [Glycine max] 0.973 0.663 0.768 1e-168
225464882 563 PREDICTED: nicalin-1 [Vitis vinifera] gi 0.965 0.644 0.790 1e-166
224102873 548 predicted protein [Populus trichocarpa] 0.922 0.633 0.811 1e-166
255565711 559 Nicalin precursor, putative [Ricinus com 0.960 0.645 0.758 1e-164
224132302 540 predicted protein [Populus trichocarpa] 0.912 0.635 0.752 1e-162
15229938 565 uncharacterized protein [Arabidopsis tha 0.957 0.637 0.753 1e-161
297815552 565 hypothetical protein ARALYDRAFT_905545 [ 0.957 0.637 0.756 1e-161
449443466 563 PREDICTED: nicalin-like [Cucumis sativus 0.968 0.646 0.759 1e-160
>gi|356539234|ref|XP_003538104.1| PREDICTED: nicalin-1-like [Glycine max] Back     alignment and taxonomy information
 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/367 (79%), Positives = 321/367 (87%), Gaps = 5/367 (1%)

Query: 1   MAHRKARERDMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASL 60
           MA RK RER+ML    S++ALVFILVACV+LCD ATVVDVYRLIQYD+SGVPFGSRLASL
Sbjct: 1   MAPRKPREREML--FDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASL 58

Query: 61  NHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENG-- 118
           NHHA SLHFSP ADLSRTV++IP+RELN+SFV EY++   PLGG++FLLP +F  EN   
Sbjct: 59  NHHAASLHFSPHADLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPRMFSFENKDG 118

Query: 119 -GGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPAT 177
            G       KE +KNVL ELEK+L+HA LPYPVYFAFE+D IDAVL D+KKND TGQPAT
Sbjct: 119 MGSNHQDESKEPLKNVLDELEKILIHANLPYPVYFAFEDDNIDAVLTDIKKNDVTGQPAT 178

Query: 178 ATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPAL 237
           ATTGGYK V+   EPKKV SP ITNIQGWL GLK D DA+QLPTIAIVASYDTFGAAPAL
Sbjct: 179 ATTGGYKFVVSATEPKKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPAL 238

Query: 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQ 297
           SVGSDSNGSG+VALLEVARLFSLLYSNPKTRG+YN+LFGLTSGGPYNYNGTHKWLRSFDQ
Sbjct: 239 SVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTHKWLRSFDQ 298

Query: 298 RLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKI 357
           RLRESIDYAICL+S+GSW NELWIHVSKPPENA+IK+I E F++VAEELGFKV LKHKKI
Sbjct: 299 RLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIHEDFSSVAEELGFKVNLKHKKI 358

Query: 358 NISNPRV 364
           NISNPRV
Sbjct: 359 NISNPRV 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|171451996|dbj|BAG15862.1| hypothetical protein [Bruguiera gymnorhiza] Back     alignment and taxonomy information
>gi|356544744|ref|XP_003540807.1| PREDICTED: nicalin-like [Glycine max] Back     alignment and taxonomy information
>gi|225464882|ref|XP_002273260.1| PREDICTED: nicalin-1 [Vitis vinifera] gi|296084876|emb|CBI28285.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102873|ref|XP_002312837.1| predicted protein [Populus trichocarpa] gi|222849245|gb|EEE86792.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565711|ref|XP_002523845.1| Nicalin precursor, putative [Ricinus communis] gi|223536933|gb|EEF38571.1| Nicalin precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224132302|ref|XP_002328235.1| predicted protein [Populus trichocarpa] gi|222837750|gb|EEE76115.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15229938|ref|NP_190019.1| uncharacterized protein [Arabidopsis thaliana] gi|7529767|emb|CAB86911.1| putative protein [Arabidopsis thaliana] gi|110740653|dbj|BAE98429.1| hypothetical protein [Arabidopsis thaliana] gi|332644371|gb|AEE77892.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297815552|ref|XP_002875659.1| hypothetical protein ARALYDRAFT_905545 [Arabidopsis lyrata subsp. lyrata] gi|297321497|gb|EFH51918.1| hypothetical protein ARALYDRAFT_905545 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449443466|ref|XP_004139498.1| PREDICTED: nicalin-like [Cucumis sativus] gi|449525770|ref|XP_004169889.1| PREDICTED: nicalin-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2100192 565 AT3G44330 [Arabidopsis thalian 0.957 0.637 0.667 1.8e-126
ZFIN|ZDB-GENE-030131-8788 572 ncl1 "nicalin" [Danio rerio (t 0.553 0.363 0.340 6.3e-35
UNIPROTKB|Q1LZC3 562 NCLN "Uncharacterized protein" 0.550 0.368 0.328 2.6e-34
MGI|MGI:1926081 563 Ncln "nicalin homolog (zebrafi 0.553 0.369 0.327 5.6e-34
UNIPROTKB|F1S8E9 562 NCLN "Uncharacterized protein" 0.545 0.364 0.321 7.4e-34
RGD|1309355 563 Ncln "nicalin" [Rattus norvegi 0.553 0.369 0.318 9.5e-34
UNIPROTKB|E2QY93 563 NCLN "Uncharacterized protein" 0.545 0.364 0.317 1.3e-33
UNIPROTKB|Q5ZJH2 562 NCLN "Nicalin" [Gallus gallus 0.550 0.368 0.328 1.3e-33
UNIPROTKB|H9L023 564 H9L023 "Uncharacterized protei 0.550 0.367 0.328 2.8e-33
UNIPROTKB|Q969V3 563 NCLN "Nicalin" [Homo sapiens ( 0.550 0.367 0.315 2e-32
TAIR|locus:2100192 AT3G44330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
 Identities = 241/361 (66%), Positives = 282/361 (78%)

Query:     5 KARERDML-DSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHH 63
             K R R M+ +S+Y +LAL+ ILVACVELCDAATVVDVYRLIQYDISGVPFGSR +SLNHH
Sbjct:     8 KQRHRVMVFESMYPILALMLILVACVELCDAATVVDVYRLIQYDISGVPFGSRFSSLNHH 67

Query:    64 AGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKD 123
             A SL F  GADLSR+V+++P+REL+I+FV +Y+S+K  LGG+L LLP+ FR  N GGG  
Sbjct:    68 AASLSFQRGADLSRSVLILPLRELDIAFVQDYISQKQSLGGLLILLPQTFRPGNVGGGSL 127

Query:   124 VRXXXXXXXXXXXXXXXXXXXXXPYPVYFAFENDEIDAVLDDVKKNDXXXXXXXXXXXXY 183
                                    P+PVYFAFEN+E DA+L DVKKND            Y
Sbjct:   128 SSENDGFRSLLGQLEKLLVHGNIPFPVYFAFENEETDAMLADVKKNDALGQQATATTGGY 187

Query:   184 KLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALXXXXXX 243
             KLVI ++EP+K+ASPTITNIQGWL GL+A+GD++QLPTIA+VASYDTFGAAPAL      
Sbjct:   188 KLVISVSEPRKIASPTITNIQGWLPGLRAEGDSSQLPTIAVVASYDTFGAAPALSVGSDS 247

Query:   244 XXXXXXALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESI 303
                   ALLEVARLFS+LYSNPKTRG+YN+LF LTSGGPYNY GT KWL+S DQR+RESI
Sbjct:   248 NGSGVVALLEVARLFSVLYSNPKTRGKYNLLFALTSGGPYNYEGTQKWLKSLDQRMRESI 307

Query:   304 DYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPR 363
             DYAICLNSVGSW++EL IHVSKPP+NAYIKQIFEGF+NVAE+LGF+V LKHKKINISN R
Sbjct:   308 DYAICLNSVGSWDSELLIHVSKPPDNAYIKQIFEGFSNVAEDLGFQVALKHKKINISNSR 367

Query:   364 V 364
             V
Sbjct:   368 V 368
GO:0009966 "regulation of signal transduction" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0016485 "protein processing" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
ZFIN|ZDB-GENE-030131-8788 ncl1 "nicalin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q1LZC3 NCLN "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1926081 Ncln "nicalin homolog (zebrafish)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8E9 NCLN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309355 Ncln "nicalin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QY93 NCLN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJH2 NCLN "Nicalin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9L023 H9L023 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q969V3 NCLN "Nicalin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
cd03882290 cd03882, M28_nicalin_like, M28 Zn-Peptidase Nicali 2e-86
cd02690252 cd02690, M28, M28 Zn-peptidases include aminopepti 2e-13
cd05640279 cd05640, M28_like_1, M28 Zn-Peptidases 1e-07
pfam05450227 pfam05450, Nicastrin, Nicastrin 1e-06
cd03881308 cd03881, M28_Nicastrin, M28 Zn-Peptidase Nicastrin 2e-05
cd05663260 cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptid 9e-05
cd05662267 cd05662, M28_like_2, M28 Zn-Peptidases 4e-04
cd03877254 cd03877, M28_like_PA, M28 Zn-Peptidases containing 0.002
pfam04389173 pfam04389, Peptidase_M28, Peptidase family M28 0.004
>gnl|CDD|193503 cd03882, M28_nicalin_like, M28 Zn-Peptidase Nicalin, Nicastrin-like protein Back     alignment and domain information 
 Score =  263 bits (673), Expect = 2e-86
 Identities = 111/238 (46%), Positives = 150/238 (63%), Gaps = 19/238 (7%)

Query: 137 LEKLLVHAKLPYPVYFAFENDEIDAVLDDV--------KKNDATGQPATATTGGYKLVIP 188
           LEK L++ K   PVYFA EN+E+ ++ +DV           +   + A+A   G++ V+ 
Sbjct: 1   LEKELLNTKTNVPVYFAPENEELLSIYEDVTSSSQAAPSAAEVLLRSASAN--GFQFVVS 58

Query: 189 IAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGV 248
               K +  P I NI+G L GL     A  LPTI IVA YD+FG APALS G+DSNGSGV
Sbjct: 59  GNSSKAIKDPKIANIEGRLTGL----GAEDLPTIVIVAHYDSFGVAPALSSGADSNGSGV 114

Query: 249 VALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAIC 308
            ALLE+ARLFS LYSNP+T  +YN+LF LT GG +NY GT  WL S   RL +++++ +C
Sbjct: 115 AALLELARLFSRLYSNPRTHPKYNLLFLLTGGGKFNYQGTKHWLESNLDRLLDNVEFVLC 174

Query: 309 LNSVGSWNNELWIHVSKPP-ENAYIKQIFEGFTNVAE-ELGFKVGLKHKKINISNPRV 364
           L+S+GS  + L++HVSKPP E     Q FE   +VAE  L   V   HKKIN+++ ++
Sbjct: 175 LDSIGSK-DSLYLHVSKPPKEGTPAFQFFEELESVAEPNLNLTV--VHKKINLADTKL 229

Peptidase M28 family, Nicalin (nicastrin-like protein) subfamily. Nicalin is distantly related to Nicastrin, a component of the Alzheimer's disease-associated gamma-secretase, and forms a complex with Nomo (nodal modulator) pM5. Similar to Nicastrin, Nicalin lacks the amino-acid conservation required for catalytically active aminopeptidases. Functional studies in zebrafish embryos and cultured human cells reveal that nicalin and Nomo collaborate to antagonize the Nodal/TGFbeta signaling pathway. Thus, nicastrin and nicalin are both associated with protein complexes involved in cell fate decisions during early embryonic development. Length = 290
>gnl|CDD|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases Back     alignment and domain information
>gnl|CDD|193519 cd05640, M28_like_1, M28 Zn-Peptidases Back     alignment and domain information
>gnl|CDD|218594 pfam05450, Nicastrin, Nicastrin Back     alignment and domain information
>gnl|CDD|193502 cd03881, M28_Nicastrin, M28 Zn-Peptidase Nicastrin, a main component of gamma-secretase complex Back     alignment and domain information
>gnl|CDD|193539 cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptidases containing a PA domain insert and associated with a PDZ domain Back     alignment and domain information
>gnl|CDD|193538 cd05662, M28_like_2, M28 Zn-Peptidases Back     alignment and domain information
>gnl|CDD|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain insert Back     alignment and domain information
>gnl|CDD|218057 pfam04389, Peptidase_M28, Peptidase family M28 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
KOG2526 555 consensus Predicted aminopeptidases - M20/M25/M40 100.0
PF05450234 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri 99.86
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 99.86
KOG2195 702 consensus Transferrin receptor and related protein 99.85
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 99.81
COG2234435 Iap Predicted aminopeptidases [General function pr 99.54
KOG2194 834 consensus Aminopeptidases of the M20 family [Postt 99.51
KOG2657 596 consensus Transmembrane glycoprotein nicastrin [Si 99.43
COG4882 486 Predicted aminopeptidase, Iap family [General func 98.56
TIGR03176 406 AllC allantoate amidohydrolase. This enzyme cataly 98.56
TIGR01879 401 hydantase amidase, hydantoinase/carbamoylase famil 98.47
PRK06133 410 glutamate carboxypeptidase; Reviewed 98.46
PRK12890 414 allantoate amidohydrolase; Reviewed 98.37
PRK13590 591 putative bifunctional OHCU decarboxylase/allantoat 98.36
PRK13799 591 unknown domain/N-carbamoyl-L-amino acid hydrolase 98.35
TIGR01910 375 DapE-ArgE acetylornithine deacetylase or succinyl- 98.29
KOG3946338 consensus Glutaminyl cyclase [Posttranslational mo 98.25
PRK09133 472 hypothetical protein; Provisional 98.25
PRK08596 421 acetylornithine deacetylase; Validated 98.24
TIGR01883 361 PepT-like peptidase T-like protein. This model rep 98.17
PRK13381 404 peptidase T; Provisional 98.16
PRK12891 414 allantoate amidohydrolase; Reviewed 98.15
PRK13983 400 diaminopimelate aminotransferase; Provisional 98.13
PRK07906 426 hypothetical protein; Provisional 98.11
PRK09104 464 hypothetical protein; Validated 98.1
PRK05469 408 peptidase T; Provisional 98.06
PRK12892 412 allantoate amidohydrolase; Reviewed 98.05
PRK09290 413 allantoate amidohydrolase; Reviewed 98.05
PRK08588 377 succinyl-diaminopimelate desuccinylase; Reviewed 98.03
PRK12893 412 allantoate amidohydrolase; Reviewed 98.03
TIGR01882 410 peptidase-T peptidase T. This model represents a t 97.99
PRK07473 376 carboxypeptidase; Provisional 97.98
TIGR01893 477 aa-his-dipept aminoacyl-histidine dipeptidase. 97.95
PRK13013 427 succinyl-diaminopimelate desuccinylase; Reviewed 97.94
TIGR01880 400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 97.94
PF09940 386 DUF2172: Domain of unknown function (DUF2172); Int 97.93
PRK06915 422 acetylornithine deacetylase; Validated 97.93
KOG2275 420 consensus Aminoacylase ACY1 and related metalloexo 97.92
PRK07907 449 hypothetical protein; Provisional 97.88
PRK07338 402 hypothetical protein; Provisional 97.87
TIGR01891 363 amidohydrolases amidohydrolase. This model represe 97.83
PRK08201 456 hypothetical protein; Provisional 97.82
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 97.8
PRK13009 375 succinyl-diaminopimelate desuccinylase; Reviewed 97.8
PRK08262 486 hypothetical protein; Provisional 97.8
TIGR01892 364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 97.79
PRK04443 348 acetyl-lysine deacetylase; Provisional 97.73
PRK07079 469 hypothetical protein; Provisional 97.73
PRK08652 347 acetylornithine deacetylase; Provisional 97.71
PRK13007 352 succinyl-diaminopimelate desuccinylase; Reviewed 97.7
PRK07522 385 acetylornithine deacetylase; Provisional 97.67
PRK06837 427 acetylornithine deacetylase; Provisional 97.65
PRK05111 383 acetylornithine deacetylase; Provisional 97.6
PRK13004 399 peptidase; Reviewed 97.56
PRK06446 436 hypothetical protein; Provisional 97.55
TIGR01902 336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 97.53
PRK08651 394 succinyl-diaminopimelate desuccinylase; Reviewed 97.53
PRK06156 520 hypothetical protein; Provisional 97.52
TIGR01900 373 dapE-gram_pos succinyl-diaminopimelate desuccinyla 97.5
COG0624 409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 97.47
PF04114 504 Gaa1: Gaa1-like, GPI transamidase component ; Inte 97.42
PRK08554 438 peptidase; Reviewed 97.41
PLN02280 478 IAA-amino acid hydrolase 97.39
TIGR01886 466 dipeptidase dipeptidase PepV. This model represent 97.36
TIGR01246 370 dapE_proteo succinyl-diaminopimelate desuccinylase 97.36
PLN02693 437 IAA-amino acid hydrolase 97.35
PRK15026 485 aminoacyl-histidine dipeptidase; Provisional 97.31
PRK00466 346 acetyl-lysine deacetylase; Validated 97.29
PRK07205 444 hypothetical protein; Provisional 97.25
PRK07318 466 dipeptidase PepV; Reviewed 97.22
TIGR01887 447 dipeptidaselike dipeptidase, putative. This model 97.12
TIGR03526 395 selenium_YgeY putative selenium metabolism hydrola 96.75
TIGR03320 395 ygeY M20/DapE family protein YgeY. Members of this 96.64
PRK08737 364 acetylornithine deacetylase; Provisional 96.3
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 96.15
TIGR03107350 glu_aminopep glutamyl aminopeptidase. This model r 95.64
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 95.63
KOG3566 617 consensus Glycosylphosphatidylinositol anchor atta 95.38
COG4187 553 RocB Arginine degradation protein (predicted deacy 95.34
PRK09864356 putative peptidase; Provisional 95.13
PRK09961344 exoaminopeptidase; Provisional 94.96
COG4310 435 Uncharacterized protein conserved in bacteria with 94.74
TIGR03106343 trio_M42_hydro hydrolase, peptidase M42 family. Th 93.34
COG1473 392 AbgB Metal-dependent amidase/aminoacylase/carboxyp 92.19
KOG2276 473 consensus Metalloexopeptidases [Amino acid transpo 83.72
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-79  Score=596.96  Aligned_cols=341  Identities=46%  Similarity=0.678  Sum_probs=312.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcccccccceeeeeEEEeeecCCCCccccccccccccccccccCCCCcccceEEEEecCCCCH
Q 017128           10 DMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNI   89 (376)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~vyRm~qyd~~g~~~Gsr~~~~~~ea~s~~~~~~~~~~R~~vv~~~~d~t~   89 (376)
                      +.|+.|+.++++++++++|+..+++++||+||||+|||++|+|||||.+.+|+||+++.+    ..+|+|+++||.|+..
T Consensus        13 ~~~~~m~~~la~~l~~~~~~~~~daate~~vyrl~qydisg~pyg~rn~~ln~~A~sl~~----~~s~r~~v~r~ld~l~   88 (555)
T KOG2526|consen   13 ALLFYMTLMLAICLVNGSQQVGEDAATEFHVYRLHQYDISGNPYGCRNYRLNYEAVSLGA----RTSRRTMVTRWLDLLT   88 (555)
T ss_pred             hHHHHHHHHHHHHHhhchhhhhhhhcccceeeeeeeeeecCccccccccccchHHHHHHH----hhhhheehhhhhhhhH
Confidence            368899999999999999999999999999999999999999999999999999999865    4589999999999875


Q ss_pred             HHHHHHHhccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCcEEEeechhHHHHHHHHhc--
Q 017128           90 SFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVK--  167 (376)
Q Consensus        90 ~~~~~l~~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~iPVyfi~~~~~~~~i~~~~~--  167 (376)
                      ....+  ..+|++|||||+||+++..++++          .++.|+.||+.|+..++++||||+++++++..|+.+++  
T Consensus        89 ~q~~d--~~~qs~G~vlI~LP~nl~~lnd~----------~r~l~~~LE~~ll~~~tavpVYfApenedl~sil~d~~~~  156 (555)
T KOG2526|consen   89 TQVDD--MWAQSTGAVLIFLPDNLDELNDI----------DRKLFIDLEAKLLSAKTAVPVYFAPENEDLVSILHDVNTR  156 (555)
T ss_pred             HHHHH--HHHhccCcEEEEechhhhhCCHH----------HHHHHHHHHHHHhcCCCCcceEecccchHHHHHHHhhccc
Confidence            55444  34578999999999999988885          67899999999999999999999999999999999974  


Q ss_pred             cCCCCCC----CCceecCCeEEEeccCCCcccCCCCcceEEEEEc-CcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCC
Q 017128          168 KNDATGQ----PATATTGGYKLVIPIAEPKKVASPTITNIQGWLQ-GLKADGDANQLPTIAIVASYDTFGAAPALSVGSD  242 (376)
Q Consensus       168 ~~~~~~~----~~t~~~~~~~l~~~~~~~~~~~~~~~~NV~g~L~-G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAd  242 (376)
                      .++++|+    ..|+++|+|++++++.+|.+..++++.||+|+|+ |....+|..+.|+|+|+|||||||.+|+++.|||
T Consensus       157 ~~dapg~~~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgAD  236 (555)
T KOG2526|consen  157 SEDAPGALQHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGAD  236 (555)
T ss_pred             cccCcchHHHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCC
Confidence            3444453    3478999999999999999999999999999998 8776666778999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCCceEEE
Q 017128          243 SNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIH  322 (376)
Q Consensus       243 dn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~~L~lh  322 (376)
                      +||||+++|||++|+|+++|.+++++++||++|++++|+.+||+|+++|++--+....+|++++||||+||++.+.||||
T Consensus       237 SNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mH  316 (555)
T KOG2526|consen  237 SNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMH  316 (555)
T ss_pred             CCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEE
Confidence            99999999999999999999889999999999999999999999999999965566678999999999999998899999


Q ss_pred             ecCCC-CchHHHHHHHHHHHHhhhcCceeeecccccccCchHHHH
Q 017128          323 VSKPP-ENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIK  366 (376)
Q Consensus       323 ~s~~p-~~~~~~~l~~~l~~~a~~~~i~~~~vhkkin~~~~~~~~  366 (376)
                      +|||| .++.+.+||+.|+++|.++++.+.++|||||+++++||-
T Consensus       317 vsKpP~dnt~i~qffr~l~svAek~~~~v~~khkkInla~s~lAW  361 (555)
T KOG2526|consen  317 VSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTKHKKINLASSRLAW  361 (555)
T ss_pred             ccCCCCcchHHHHHHHHhhhhchhcceEEEEEeeeEeeccchhhh
Confidence            99999 689999999999999999999999999999999999983

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>COG2234 Iap Predicted aminopeptidases [General function prediction only] Back     alignment and domain information
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only] Back     alignment and domain information
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>PRK07079 hypothetical protein; Provisional Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>TIGR01887 dipeptidaselike dipeptidase, putative Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>PRK08737 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03107 glu_aminopep glutamyl aminopeptidase Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09864 putative peptidase; Provisional Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only] Back     alignment and domain information
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family Back     alignment and domain information
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] Back     alignment and domain information
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3kas_A 640 Transferrin receptor protein 1; transferrin recept 3e-09
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 6e-07
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 6e-07
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 3e-05
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 9e-05
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Length = 640 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLF 258
            I NI G ++G            + + A  D      A   G+  +G G   LL++A++F
Sbjct: 265 KILNIFGVIKGFVEPDH-----YVVVGAQRD------AWGPGAAKSGVGTALLLKLAQMF 313

Query: 259 SLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNE 318
           S +      +   +I+F   S G +   G  +WL  +   L       I L+      + 
Sbjct: 314 SDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSN 373

Query: 319 LWIHVS 324
             +  S
Sbjct: 374 FKVSAS 379
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Length = 707 Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3kas_A 640 Transferrin receptor protein 1; transferrin recept 99.86
4fai_A330 CG5976, isoform B; alpha/beta hydrolase, PGlu form 99.86
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 99.86
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 99.83
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 99.83
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 99.81
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.8
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 99.79
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 99.78
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 99.78
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 99.75
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 99.71
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 99.65
3k9t_A 435 Putative peptidase; structural genomics, joint cen 99.44
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 98.9
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 98.89
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 98.88
2zog_A 479 Cytosolic non-specific dipeptidase; metallopeptida 98.66
3ct9_A 356 Acetylornithine deacetylase; NP_812461.1, A putati 98.6
3dlj_A 485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 98.6
2pok_A 481 Peptidase, M20/M25/M40 family; M20 family peptidas 98.58
1cg2_A 393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 98.56
3n5f_A 408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 98.55
3pfo_A 433 Putative acetylornithine deacetylase; metal bindin 98.49
2gre_A349 Deblocking aminopeptidase; structural genomi prote 98.4
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 98.35
1vgy_A 393 Succinyl-diaminopimelate desuccinylase; structural 98.35
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 98.29
3tx8_A 369 Succinyl-diaminopimelate desuccinylase; peptidase, 98.28
3pfe_A 472 Succinyl-diaminopimelate desuccinylase; metal bind 98.28
1xmb_A 418 IAA-amino acid hydrolase homolog 2; structural gen 98.27
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 98.25
3gb0_A 373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 98.25
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 98.24
3isz_A 377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 98.23
2rb7_A 364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 98.21
1z2l_A 423 Allantoate amidohydrolase; ALLC, purine cataboli a 98.2
3ife_A 434 Peptidase T; metallopeptidase, aminopeptidase, hyd 98.2
1ysj_A 404 Protein YXEP; M20 family peptidase, dinuclear meta 98.19
2v8h_A 474 Beta-alanine synthase; amidohydrolase, alpha and b 98.16
3khx_A 492 Putative dipeptidase sacol1801; DAPE, metallopepti 98.12
2f7v_A 369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 98.06
1lfw_A 470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 98.06
3rza_A 396 Tripeptidase; phosphorylase/hydrolase-like, struct 98.04
1fno_A 417 Peptidase T; metallo peptidase, protease, hydrolas 97.95
3ram_A 394 HMRA protein; two-domain, catalytic (alpha-beta-al 97.9
3mru_A 490 Aminoacyl-histidine dipeptidase; metalloprotease, 97.89
3io1_A 445 Aminobenzoyl-glutamate utilization protein; peptid 97.87
2qyv_A 487 XAA-His dipeptidase; YP_718209.1, structural genom 97.73
1ylo_A348 Hypothetical protein SF2450; structural genomics, 97.35
1vho_A346 Endoglucanase; structural genomics, unknown functi 96.82
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 96.79
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 95.21
3isx_A343 Endoglucanase; TM1050, structural genomics, joint 86.25
2vpu_A354 TET3, 354AA long hypothetical operon protein FRV; 83.38
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
Probab=99.86  E-value=4.6e-21  Score=202.92  Aligned_cols=162  Identities=19%  Similarity=0.266  Sum_probs=122.4

Q ss_pred             CCCcEEEeechhHHHHHHHHhccCCCC---CCCC-ce-ecCC--eEEEeccCCCcccCCCCcceEEEEEcCcCCCCCCCC
Q 017128          146 LPYPVYFAFENDEIDAVLDDVKKNDAT---GQPA-TA-TTGG--YKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQ  218 (376)
Q Consensus       146 ~~iPVyfi~~~~~~~~i~~~~~~~~~~---~~~~-t~-~~~~--~~l~~~~~~~~~~~~~~~~NV~g~L~G~~~~~~~~~  218 (376)
                      ..||+..+.++ +++.|++.+......   +... +. ...+  .++.+    ........+.||+|+|+|+..     +
T Consensus       210 p~IP~~~Is~~-~a~~Ll~~l~g~~~~~~~~~~~~~~~~g~~~~v~l~v----~~~~~~~~~~NVi~~i~G~~~-----~  279 (640)
T 3kas_A          210 PNIPVQTISRA-AAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVKLTV----SNVLKEIKILNIFGVIKGFVE-----P  279 (640)
T ss_dssp             CSSCEEECCHH-HHHHHHTTEEEECCGGGCCCTTCEEEECTTEEEEEEE----CCEEEEEEEEEEEEEECCSSE-----E
T ss_pred             CCCCEEecCHH-HHHHHHHHccCCchhhhhcccCcccccCCCceEEEEE----EEEEEeeeEEEEEEEEeCCcC-----C
Confidence            45999999854 899999887652100   1110 00 0111  22222    122344568999999999841     3


Q ss_pred             CCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHh
Q 017128          219 LPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQR  298 (376)
Q Consensus       219 ~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~  298 (376)
                      +++|||+||||||      .+||+||+||+++|||++|.|+++..+.+++|+|+|+|++|+|||.|+.||++|++++...
T Consensus       280 ~~~vvvgaH~Ds~------~~Ga~D~~sG~a~lLe~ar~l~~~~~~~g~~p~r~I~f~~~~~EE~gl~GS~~~~~~~~~~  353 (640)
T 3kas_A          280 DHYVVVGAQRDAW------GPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSS  353 (640)
T ss_dssp             EEEEEEEEECCCS------SCCTTTTHHHHHHHHHHHHHHHHHHHTSCCCCSEEEEEEEESSGGGTSHHHHHHHHHTTTT
T ss_pred             CCceeeecccCCC------CCCCCcCcHHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEECCcccCchhHHHHHHhhhhh
Confidence            7899999999999      5899999999999999999999874224688999999999999999999999999997655


Q ss_pred             hhcCeeEEEEeccccCCCCceEEEe
Q 017128          299 LRESIDYAICLNSVGSWNNELWIHV  323 (376)
Q Consensus       299 ~~~~i~~vInLD~ig~~~~~L~lh~  323 (376)
                      +.+++.++||+|+.|.++..+.+..
T Consensus       354 l~~~~~a~iNlD~~~~G~~~l~~~~  378 (640)
T 3kas_A          354 LHLKAFTYINLDKAVLGTSNFKVSA  378 (640)
T ss_dssp             GGGTEEEEEECTTCBSCSSEEEEEE
T ss_pred             hhhCEEEEEecccCccCCCceEEEe
Confidence            5689999999999988634565544
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* Back     alignment and structure
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1de4c3294 c.56.5.5 (C:122-189,C:383-608) Transferrin recepto 4e-06
d2afwa1329 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf 2e-04
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 240 GSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRL 299
           G+  +G G   LL++A++FS +      +   +I+F   S G +   G  +WL  +   L
Sbjct: 101 GAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSL 160

Query: 300 RESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFE 337
                  I L+      +   +  S P     I++  +
Sbjct: 161 HLKAFTYINLDKAVLGTSNFKVSAS-PLLYTLIEKTMQ 197
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 99.91
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 99.86
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 99.86
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 99.86
d2afwa1329 Glutaminyl-peptide cyclotransferase, QPCT {Human ( 99.86
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 99.17
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 99.17
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 99.11
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 99.1
d1z2la1293 Allantoate amidohydrolase AllC catalytic domain {E 99.02
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 98.97
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 98.67
d1r3na1322 Peptidase-like beta-alanine synthase, catalytic do 98.62
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 98.62
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 98.33
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 98.22
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 98.16
d1y0ya2 255 Frv operon protein FrvX, catalytic domain {Pyrococ 97.15
d1ysja1261 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 96.77
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 95.71
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.2e-25  Score=209.16  Aligned_cols=115  Identities=22%  Similarity=0.305  Sum_probs=101.1

Q ss_pred             CCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEE
Q 017128          198 PTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGL  277 (376)
Q Consensus       198 ~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~  277 (376)
                      ..+.||+|+|+|+..     ++++|||+|||||+      ++||+|||||+|+|||+||.|+++..+.+++|+|+|+|++
T Consensus        70 ~~~~Nvig~i~G~~~-----~~~~ivigaH~Ds~------~~GA~DnasG~a~llelar~l~~~~~~~g~~P~rtI~f~~  138 (294)
T d1de4c3          70 IKILNIFGVIKGFVE-----PDHYVVVGAQRDAW------GPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFAS  138 (294)
T ss_dssp             EEEEEEEEEECCSSE-----EEEEEEEEEECCCS------SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCCSEEEEEEE
T ss_pred             CccceEEEEEeCCCC-----CCceEEEEeecccc------cccccCCchhHHHHHHHHHHHHhhhhhcCCCCCceEEEEE
Confidence            347899999999752     47899999999999      6899999999999999999999976556799999999999


Q ss_pred             eCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCCceEEEe
Q 017128          278 TSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHV  323 (376)
Q Consensus       278 ~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~~L~lh~  323 (376)
                      |+|||.|+.||++|++++...+.+++.++||+|+.+.++..+++..
T Consensus       139 ~~~EE~Gl~GS~~~~~~~~~~l~~~~~a~iNlD~~~~g~~~~~~~~  184 (294)
T d1de4c3         139 WSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSA  184 (294)
T ss_dssp             ECCCTTTSHHHHHHHHHSHHHHTTTEEEEEECTTCBSCSSEEEEEE
T ss_pred             ecCccccccCHHHHHHhChhhhccceEEEEecccCcCCCCCCceec
Confidence            9999999999999999877666789999999999877645666554
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure