Citrus Sinensis ID: 017130

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQFD
cccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHccccccHHHcccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccEEEEEcccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccEEcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccEHHccccccEEEEEccccccccHHcccccEEccccccEEEEEccccEEEEEEcccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCnfssrkypskssvftpircGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEqlqlddidvpltnirpvkKVAIVIITgdrglcggfNKAVIKKAENRMVELKDMGLDCVVISvgkkgnayfrhrSNVSVIRciegegfytvkEAQTIADNVFSLFVSEEVDKVELVYTKFVSlvksdpvihtllplsmkgvicnengmcvDAVEDELFRLTTNEGKMIVErdsvtfnkgelsplmlfeqdPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQFD
MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSrkypskssvftpircGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQeavissrpfVEKLVEFLYVINEQlqlddidvpltnirpVKKVAIVIItgdrglcggfNKAVIKKAENRMVELKDMGLDCVVISVGkkgnayfrhrsnvsVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFvslvksdpvihTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQFD
MSCSYLTTWVssksnlsshllhlnqnsVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQFD
****YLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQE*************************************KITGELLEIVAG********
**************************************************CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQ*Q**DI***LTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNE**************GELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT***
***********SKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQFD
**CSYL**W************************************F****CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGxxxxxxxxxxxxxxxxxxxxxKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAxxxxxxxxxxxxxxxxxxxxxERQAKITGELLEIVAGAEALTQFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
P29790377 ATP synthase gamma chain, N/A no 0.989 0.986 0.670 1e-139
Q01909386 ATP synthase gamma chain yes no 0.890 0.867 0.712 1e-138
Q01908373 ATP synthase gamma chain no no 0.984 0.991 0.658 1e-138
P28552376 ATP synthase gamma chain, N/A no 0.962 0.962 0.642 1e-134
P05435364 ATP synthase gamma chain, N/A no 0.896 0.925 0.674 1e-132
P0C1M0359 ATP synthase subunit gamm N/A no 0.888 0.930 0.666 1e-130
P12113358 ATP synthase gamma chain, N/A no 0.859 0.902 0.541 1e-103
Q3M9W1315 ATP synthase gamma chain yes no 0.829 0.990 0.548 1e-96
P12408315 ATP synthase gamma chain yes no 0.829 0.990 0.545 5e-96
B2J059315 ATP synthase gamma chain yes no 0.832 0.993 0.515 1e-91
>sp|P29790|ATPG_TOBAC ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1 Back     alignment and function desciption
 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/376 (67%), Positives = 299/376 (79%), Gaps = 4/376 (1%)

Query: 1   MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYL----CNFSSRKYPSKSSVFTPIRCGLREL 56
           MSCS LT  VSSK +LS       ++SV        N S    PS+SS  TP+ CGLR+L
Sbjct: 1   MSCSNLTMLVSSKPSLSDSSALSFRSSVSPFQLPNHNTSGPSNPSRSSSVTPVHCGLRDL 60

Query: 57  KERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDV 116
           ++R+ +VKNTQKITEAMKLVAAA+VR+AQEAV+ +RPF E LVE LY INEQLQ DDIDV
Sbjct: 61  RDRIESVKNTQKITEAMKLVAAAKVRRAQEAVVGARPFSETLVEVLYNINEQLQTDDIDV 120

Query: 117 PLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAY 176
           PLT +RPVKKVA+V++TGDRGLCGGFN  +IKKAE R+ +LK +G+D  +ISVGKKGN+Y
Sbjct: 121 PLTKVRPVKKVALVVVTGDRGLCGGFNNYLIKKAEARIRDLKALGIDYTIISVGKKGNSY 180

Query: 177 FRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVI 236
           F  R  + V + +EG    T K+AQ IAD+VFSLFVSEEVDKVEL+YTKFVSLVKS+PVI
Sbjct: 181 FIRRPYIPVDKFLEGSNLPTAKDAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPVI 240

Query: 237 HTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQD 296
           HTLLPLS KG IC+ NG CVDA  DE FRLTT EGK+ VERD +     + SP++ FEQD
Sbjct: 241 HTLLPLSPKGEICDINGNCVDAANDEFFRLTTKEGKLTVERDIIRTKTTDFSPILQFEQD 300

Query: 297 PAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQA 356
           P QILDA++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA ELKKNLS  YN++RQA
Sbjct: 301 PVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQA 360

Query: 357 KITGELLEIVAGAEAL 372
           KITGE+LEIVAGA+AL
Sbjct: 361 KITGEILEIVAGADAL 376
Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
Nicotiana tabacum (taxid: 4097)
>sp|Q01909|ATPG2_ARATH ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1 Back     alignment and function description
>sp|Q01908|ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1 Back     alignment and function description
>sp|P28552|ATPG_PEA ATP synthase gamma chain, chloroplastic OS=Pisum sativum GN=ATPC PE=2 SV=1 Back     alignment and function description
>sp|P05435|ATPG_SPIOL ATP synthase gamma chain, chloroplastic OS=Spinacia oleracea GN=ATPC PE=1 SV=2 Back     alignment and function description
>sp|P0C1M0|ATPG_MAIZE ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|P12113|ATPG_CHLRE ATP synthase gamma chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPC PE=1 SV=1 Back     alignment and function description
>sp|Q3M9W1|ATPG_ANAVT ATP synthase gamma chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|P12408|ATPG_NOSS1 ATP synthase gamma chain OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=atpG PE=3 SV=2 Back     alignment and function description
>sp|B2J059|ATPG_NOSP7 ATP synthase gamma chain OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
255569659381 ATP synthase gamma chain 2, chloroplast, 1.0 0.986 0.682 1e-146
449454742373 PREDICTED: ATP synthase gamma chain, chl 0.992 1.0 0.680 1e-144
307136215373 ATP synthase [Cucumis melo subsp. melo] 0.992 1.0 0.675 1e-144
225444525372 PREDICTED: ATP synthase gamma chain, chl 0.986 0.997 0.698 1e-142
224078604375 predicted protein [Populus trichocarpa] 0.992 0.994 0.666 1e-140
356548953375 PREDICTED: ATP synthase gamma chain, chl 0.984 0.986 0.683 1e-139
255554879376 ATP synthase gamma chain 2, chloroplast, 0.973 0.973 0.658 1e-138
388519673374 unknown [Medicago truncatula] 0.973 0.978 0.656 1e-138
449433954371 PREDICTED: ATP synthase gamma chain, chl 0.869 0.881 0.721 1e-138
217072566374 unknown [Medicago truncatula] 0.973 0.978 0.656 1e-138
>gi|255569659|ref|XP_002525795.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] gi|223534945|gb|EEF36631.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/381 (68%), Positives = 308/381 (80%), Gaps = 5/381 (1%)

Query: 1   MSCSYLTTWVS---SKSNLSSHLLHLNQNSVDYLCNFSS--RKYPSKSSVFTPIRCGLRE 55
           MS S LT WV+   SK   SS       N   +L   S     +    S  +PI CGLRE
Sbjct: 1   MSSSNLTMWVNPKPSKFETSSLSFRFQANPFRHLARISHLYNTFSQSYSYSSPIHCGLRE 60

Query: 56  LKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDID 115
           L+ER++TVKNTQKITEAMKLVAAA++R+AQEAVI+ RPF E L+E LY INEQLQL+DID
Sbjct: 61  LRERISTVKNTQKITEAMKLVAAAKIRRAQEAVINGRPFAESLLEVLYHINEQLQLEDID 120

Query: 116 VPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNA 175
           VPLTN+RPVK+VA+V++TGDRGLCGGFN AV++KAE RM+EL++MGLDC VISVGKKGNA
Sbjct: 121 VPLTNVRPVKRVALVVVTGDRGLCGGFNNAVLRKAETRMMELENMGLDCSVISVGKKGNA 180

Query: 176 YFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPV 235
           YF+ R N  V + IEG+ F T KEAQ IAD+VFSLFVSEEVDKVEL+YTKFVSLVKSDPV
Sbjct: 181 YFKRRGNACVDKFIEGDSFPTAKEAQLIADDVFSLFVSEEVDKVELMYTKFVSLVKSDPV 240

Query: 236 IHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQ 295
           I TLLPLS +G +C+ NG CVDA +DE FRLT+ EGK+ VER+S   N+  + PLM FEQ
Sbjct: 241 IRTLLPLSPRGGVCDVNGKCVDAADDEFFRLTSKEGKLAVERESGKANREGILPLMQFEQ 300

Query: 296 DPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQ 355
           DP QILDAMMPLY+NSQILRALQES ASE+AARM+AMS ATDNA +L+K+LS+AYN+ERQ
Sbjct: 301 DPIQILDAMMPLYLNSQILRALQESLASELAARMNAMSNATDNAVDLQKSLSIAYNRERQ 360

Query: 356 AKITGELLEIVAGAEALTQFD 376
           +KITGE+LEIVAGAEALT+ D
Sbjct: 361 SKITGEILEIVAGAEALTELD 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449454742|ref|XP_004145113.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449474626|ref|XP_004154236.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449488358|ref|XP_004158011.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136215|gb|ADN34052.1| ATP synthase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|225444525|ref|XP_002275015.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078604|ref|XP_002305572.1| predicted protein [Populus trichocarpa] gi|118489494|gb|ABK96549.1| unknown [Populus trichocarpa x Populus deltoides] gi|222848536|gb|EEE86083.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548953|ref|XP_003542863.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 1 [Glycine max] gi|356548955|ref|XP_003542864.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 2 [Glycine max] gi|356548957|ref|XP_003542865.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 3 [Glycine max] gi|356548959|ref|XP_003542866.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|255554879|ref|XP_002518477.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] gi|223542322|gb|EEF43864.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388519673|gb|AFK47898.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449433954|ref|XP_004134761.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449479457|ref|XP_004155604.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|217072566|gb|ACJ84643.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2036149386 ATPC2 [Arabidopsis thaliana (t 0.867 0.844 0.733 2.4e-122
TAIR|locus:2135054373 ATPC1 [Arabidopsis thaliana (t 0.984 0.991 0.639 4.6e-121
UNIPROTKB|P17253314 atpG "ATP synthase gamma chain 0.827 0.990 0.496 9.3e-75
TIGR_CMR|CHY_2546282 CHY_2546 "ATP synthase F1, gam 0.486 0.648 0.382 7.6e-44
TIGR_CMR|GSU_0112287 GSU_0112 "ATP synthase F1, gam 0.518 0.679 0.33 7.6e-44
TIGR_CMR|DET_0563285 DET_0563 "ATP synthase F1, gam 0.486 0.642 0.355 2.2e-42
UNIPROTKB|P0ABA6287 atpG [Escherichia coli K-12 (t 0.497 0.651 0.310 2e-41
UNIPROTKB|Q9KNH4288 atpG "ATP synthase gamma chain 0.497 0.649 0.331 8.4e-41
TIGR_CMR|VC_2765288 VC_2765 "ATP synthase F1, gamm 0.497 0.649 0.331 8.4e-41
TIGR_CMR|SPO_3163291 SPO_3163 "ATP synthase F1, gam 0.507 0.656 0.323 4.6e-40
TAIR|locus:2036149 ATPC2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 240/327 (73%), Positives = 277/327 (84%)

Query:    49 IRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQ 108
             IR G+REL+ER+++VKNTQKITEAM+LVAAARVR+AQ+AVI  RPF E LVE LY IN+ 
Sbjct:    59 IRAGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQS 118

Query:   109 LQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVIS 168
              QL+DID PL+ +RPVK+VA+V++TGD+GLCGGFN AV KKA  R+ ELK  G+DCVVIS
Sbjct:   119 AQLEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVIS 178

Query:   169 VGKKGNAYFRHRSNVSVIRCIEGEG-FYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFV 227
             VGKKGNAYF  R    V +CIEG G F T KEAQ IAD+VFSLFVSEEVDKVELVYTKFV
Sbjct:   179 VGKKGNAYFSRRDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFV 238

Query:   228 SLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGEL 287
             SLVKSDPVIHTLLPLSMKG  C+  G CVDA+EDE+FRLT+ +GK+ VER  +   K E+
Sbjct:   239 SLVKSDPVIHTLLPLSMKGESCDVKGECVDAIEDEMFRLTSKDGKLAVERTKLEVEKPEI 298

Query:   288 SPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLS 347
             SPLM FEQDP QILDAMMPLY+NSQILRALQES ASE+A+RM+AMS ATDNA ELKKNL+
Sbjct:   299 SPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNLT 358

Query:   348 VAYNQERQAKITGELLEIVAGAEALTQ 374
             +AYN+ RQAKITGELLEIVAGAEAL +
Sbjct:   359 MAYNRARQAKITGELLEIVAGAEALRE 385
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;TAS
GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA
GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA
GO:0009544 "chloroplast ATP synthase complex" evidence=TAS
GO:0030234 "enzyme regulator activity" evidence=TAS
GO:2000067 "regulation of root morphogenesis" evidence=IMP
TAIR|locus:2135054 ATPC1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P17253 atpG "ATP synthase gamma chain" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2546 CHY_2546 "ATP synthase F1, gamma subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0112 GSU_0112 "ATP synthase F1, gamma subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0563 DET_0563 "ATP synthase F1, gamma subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABA6 atpG [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNH4 atpG "ATP synthase gamma chain" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2765 VC_2765 "ATP synthase F1, gamma subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3163 SPO_3163 "ATP synthase F1, gamma subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29790ATPG_TOBACNo assigned EC number0.67020.98930.9867N/Ano
Q318U2ATPG_PROM9No assigned EC number0.47200.82440.9810yesno
B7K5I9ATPG_CYAP8No assigned EC number0.49370.82710.9904yesno
A8G6V0ATPG_PROM2No assigned EC number0.47200.82440.9810yesno
Q3AHK6ATPG_SYNSCNo assigned EC number0.44440.82970.9873yesno
A5GNC7ATPG_SYNPWNo assigned EC number0.45510.83240.9905yesno
B0BZL3ATPG_ACAM1No assigned EC number0.50770.82440.9779yesno
Q8DLU1ATPG_THEEBNo assigned EC number0.50150.82970.9904yesno
P08450ATPG_SYNP6No assigned EC number0.50760.82440.9810yesno
P0C1M0ATPG_MAIZENo assigned EC number0.66660.88820.9303N/Ano
A2BYH5ATPG_PROM5No assigned EC number0.47510.82440.9810yesno
Q2JSW2ATPG_SYNJANo assigned EC number0.48440.83240.9968yesno
B1XHY7ATPG_SYNP2No assigned EC number0.50460.82440.9872yesno
Q7VA64ATPG_PROMANo assigned EC number0.46270.82440.9810yesno
Q2JIG1ATPG_SYNJBNo assigned EC number0.47510.83240.9968yesno
B0JWV2ATPG_MICANNo assigned EC number0.50150.82710.9873yesno
Q112Z7ATPG_TRIEINo assigned EC number0.46100.82440.9872yesno
A3PET8ATPG_PROM0No assigned EC number0.47200.82440.9810yesno
P12113ATPG_CHLRENo assigned EC number0.54170.85900.9022N/Ano
P12408ATPG_NOSS1No assigned EC number0.54510.82970.9904yesno
Q7U8W4ATPG_SYNPXNo assigned EC number0.44440.82970.9873yesno
B1WUI3ATPG_CYAA5No assigned EC number0.50620.82710.9904yesno
Q7NDC0ATPG_GLOVINo assigned EC number0.45030.81910.9808yesno
B8HPK2ATPG_CYAP4No assigned EC number0.51860.83240.9936yesno
Q0I7R3ATPG_SYNS3No assigned EC number0.45200.82710.9810yesno
A9BCD8ATPG_PROM4No assigned EC number0.45060.82970.9873yesno
Q3M9W1ATPG_ANAVTNo assigned EC number0.54820.82970.9904yesno
A5GV71ATPG_SYNR3No assigned EC number0.44580.82970.9904yesno
B2J059ATPG_NOSP7No assigned EC number0.51540.83240.9936yesno
Q7V5S8ATPG_PROMMNo assigned EC number0.43510.81910.9746yesno
Q3AZM0ATPG_SYNS9No assigned EC number0.43780.82970.9842yesno
Q41075ATPG_PHATRNo assigned EC number0.49210.81640.8297yesno
Q7V038ATPG_PROMPNo assigned EC number0.47510.82440.9810yesno
A2C4J4ATPG_PROM1No assigned EC number0.47220.82970.9873yesno
B7KKR3ATPG_CYAP7No assigned EC number0.50930.82710.9904yesno
P05435ATPG_SPIOLNo assigned EC number0.67440.89620.9258N/Ano
A2BT24ATPG_PROMSNo assigned EC number0.46890.82440.9810yesno
Q46J58ATPG_PROMTNo assigned EC number0.47220.82970.9873yesno
A2C6X6ATPG_PROM3No assigned EC number0.43510.81910.9746yesno
Q05384ATPG_SYNP1No assigned EC number0.50460.82440.9841N/Ano
Q01909ATPG2_ARATHNo assigned EC number0.71260.89090.8678yesno
Q31RF0ATPG_SYNE7No assigned EC number0.50760.82440.9810yesno
P28552ATPG_PEANo assigned EC number0.64260.96270.9627N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
PRK05621284 PRK05621, PRK05621, F0F1 ATP synthase subunit gamm 1e-112
TIGR01146286 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma 1e-110
cd12151282 cd12151, F1-ATPase_gamma, mitochondrial ATP syntha 1e-105
pfam00231288 pfam00231, ATP-synt, ATP synthase 1e-103
COG0224287 COG0224, AtpG, F0F1-type ATP synthase, gamma subun 7e-96
PRK13423288 PRK13423, PRK13423, F0F1 ATP synthase subunit gamm 1e-70
PRK14111290 PRK14111, PRK14111, F0F1 ATP synthase subunit gamm 3e-62
PRK13427289 PRK13427, PRK13427, F0F1 ATP synthase subunit gamm 4e-62
PRK13425291 PRK13425, PRK13425, F0F1 ATP synthase subunit gamm 3e-61
PRK14110291 PRK14110, PRK14110, F0F1 ATP synthase subunit gamm 5e-58
PRK13426291 PRK13426, PRK13426, F0F1 ATP synthase subunit gamm 4e-56
PRK13424291 PRK13424, PRK13424, F0F1 ATP synthase subunit gamm 9e-51
PRK13422298 PRK13422, PRK13422, F0F1 ATP synthase subunit gamm 3e-37
TIGR03323285 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, 4e-18
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information 
 Score =  327 bits (841), Expect = e-112
 Identities = 127/322 (39%), Positives = 187/322 (58%), Gaps = 41/322 (12%)

Query: 52  GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQL 111
            L+E++ R+ +VKNTQKIT+AM++VAA+++RKAQE   +SRP+ EK+ +   VI+     
Sbjct: 3   SLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRK---VISHLASA 59

Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
            + D PL   R VK+V  +++T DRGLCGG+N  +IKK    + EL+  G +  +I +G+
Sbjct: 60  SEYDHPLLVEREVKRVGYIVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGR 119

Query: 172 KGNAYFRHRSNVSVIRCIEGEGFY-TVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLV 230
           KG  +F+ R  ++V+    G G   T +EA  IA  +   + + E D++ +VY KFV+ +
Sbjct: 120 KGVDFFKRR-GINVVAEYTGLGDQPTFEEAIGIAKKLLDAYDNGEFDELYIVYNKFVNTL 178

Query: 231 KSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290
             +P +  LLPL                 E+E                     + E S  
Sbjct: 179 SQEPTVEQLLPLE---------------KEEE---------------------EEETSWD 202

Query: 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAY 350
             +E D  +ILDA++P Y+ SQI +AL E+ ASE AARM+AM  ATDNA +L K L++ Y
Sbjct: 203 YEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVY 262

Query: 351 NQERQAKITGELLEIVAGAEAL 372
           N+ RQA IT E+ EIV GAEAL
Sbjct: 263 NRARQAAITQEITEIVGGAEAL 284

Length = 284
>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit Back     alignment and domain information
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit Back     alignment and domain information
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase Back     alignment and domain information
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|211807 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
COG0224287 AtpG F0F1-type ATP synthase, gamma subunit [Energy 100.0
PRK13427289 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK14111290 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13426291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13423288 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13425291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13424291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13422298 F0F1 ATP synthase subunit gamma; Provisional 100.0
PF00231290 ATP-synt: ATP synthase This Pfam entry corresponds 100.0
PRK14110291 F0F1 ATP synthase subunit gamma; Provisional 100.0
TIGR01146287 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi 100.0
PRK05621284 F0F1 ATP synthase subunit gamma; Validated 100.0
TIGR03323285 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit 100.0
KOG1531304 consensus F0F1-type ATP synthase, gamma subunit [E 100.0
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2e-86  Score=636.27  Aligned_cols=286  Identities=43%  Similarity=0.642  Sum_probs=262.4

Q ss_pred             HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcC-CCCceEEEEEE
Q 017130           54 RELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNI-RPVKKVAIVII  132 (376)
Q Consensus        54 keIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~-~~~k~~~~IVi  132 (376)
                      ++||+||+||++|+|||+||+|||+||+||+|+++.+.+||++++.+++.++...  ..+.+||++.. ++++++++|||
T Consensus         1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~--~~~~~~p~~~~~~e~kr~~~Ivi   78 (287)
T COG0224           1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASA--NLELDHPLLKPTREVKRVLYIVI   78 (287)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc--ccccCCcccccccCCCceEEEEE
Confidence            5899999999999999999999999999999999999999999999999999875  12457898776 78999999999


Q ss_pred             eCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHhhhh
Q 017130          133 TGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFV  212 (376)
Q Consensus       133 tSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~~~~  212 (376)
                      |||||||||||+||+|.+...++++..+|.++.+++||+||.+||++++...+..+.++++.|+++.+..|++.+++.|.
T Consensus        79 TSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~  158 (287)
T COG0224          79 TSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFL  158 (287)
T ss_pred             ecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999899999999999999999887777777888888999999999999999999


Q ss_pred             cCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCCcc
Q 017130          213 SEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLML  292 (376)
Q Consensus       213 ~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (376)
                      +|++|+|+|+||+|+|+++|+|++++|||+++.+.           ..+.                 .  ++.  ..+|+
T Consensus       159 ~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~-----------~~~~-----------------~--~~~--~~~~e  206 (287)
T COG0224         159 EGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIED-----------EAEE-----------------E--EPG--LWDYE  206 (287)
T ss_pred             CCCCceEEEEecccccceeeeeeeEEEecCCcccc-----------hhhh-----------------c--ccc--cccee
Confidence            99999999999999999999999999999985220           0000                 0  000  14789


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhh
Q 017130          293 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL  372 (376)
Q Consensus       293 fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGAeAl  372 (376)
                      ||||+++||+.|+|+|+.++||+|++||.||||+|||+||++|||||+|||++|++.|||+|||+||+||+|||+||+||
T Consensus       207 fEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL  286 (287)
T COG0224         207 FEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL  286 (287)
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 017130          373 T  373 (376)
Q Consensus       373 ~  373 (376)
                      +
T Consensus       287 ~  287 (287)
T COG0224         287 E  287 (287)
T ss_pred             C
Confidence            5

>PRK13427 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit Back     alignment and domain information
>PRK05621 F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
2qe7_G286 Crystal Structure Of The F1-Atpase From The Thermoa 1e-46
3oaa_G286 Structure Of The E.Coli F1-Atp Synthase Inhibited B 8e-40
2xok_G311 Refined Structure Of Yeast F1c10 Atpase Complex To 3e-24
2hld_G278 Crystal Structure Of Yeast Mitochondrial F1-Atpase 8e-24
3oe7_G278 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 4e-23
1fs0_G230 Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Le 4e-23
2f43_G273 Rat Liver F1-atpase Length = 273 2e-20
1mab_G270 Rat Liver F1-Atpase Length = 270 2e-20
2w6e_G298 Low Resolution Structures Of Bovine Mitochondrial F 2e-20
1cow_G272 Bovine Mitochondrial F1-Atpase Complexed With Aurov 3e-20
2jdi_G273 Ground State Structure Of F1-Atpase From Bovine Hea 3e-20
1ohh_G100 Bovine Mitochondrial F1-Atpase Complexed With The I 1e-07
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 173/322 (53%), Gaps = 40/322 (12%)
Query: 52  GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQL 111
           G+RE+K R+ +VKNT++IT+AMK+VAAA++R+AQE   ++RP+ +K+ E +  I    + 
Sbjct: 3   GMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTK- 61
Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
            D   P+   RPVKK   ++IT DRGL G +N  +++     + E      + V+ +VG+
Sbjct: 62  -DFSHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGR 120
Query: 172 KGNAYFRHRSNVSVIRCIEG-EGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLV 230
           KG  +F+ R    V+  + G     ++ E Q IA +   +F  E  DK+ + Y +FVS +
Sbjct: 121 KGRDFFKKR-GYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPI 179
Query: 231 KSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290
              PV   LLPL+ + V+       V A E                              
Sbjct: 180 VQRPVEKQLLPLTSEEVLDG----PVSAYE------------------------------ 205
Query: 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAY 350
             +E D   +L+ ++P Y  + I  AL ++ ASE  ARM+AM  ATDNA E+ + L++ +
Sbjct: 206 --YEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLETLTLQF 263
Query: 351 NQERQAKITGELLEIVAGAEAL 372
           N+ RQA IT E+ EIVAGA AL
Sbjct: 264 NRARQAAITQEIAEIVAGANAL 285
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 286 Back     alignment and structure
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311 Back     alignment and structure
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278 Back     alignment and structure
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278 Back     alignment and structure
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Length = 230 Back     alignment and structure
>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273 Back     alignment and structure
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270 Back     alignment and structure
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298 Back     alignment and structure
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272 Back     alignment and structure
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273 Back     alignment and structure
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 1e-109
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 1e-107
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 5e-97
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 8e-97
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 2e-96
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 2e-73
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286 Back     alignment and structure
 Score =  320 bits (822), Expect = e-109
 Identities = 104/325 (32%), Positives = 165/325 (50%), Gaps = 44/325 (13%)

Query: 52  GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQ- 110
           G +E++ ++ +V+NTQKIT+AM++VAA+++RK+Q+ + +SRP+ E + +   VI      
Sbjct: 2   GAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRK---VIGHLAHG 58

Query: 111 LDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVG 170
             +   P    R VK+V  ++++ DRGLCGG N  + KK    M    D G+ C +  +G
Sbjct: 59  NLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIG 118

Query: 171 KKGNAYFRHRSNVSVIRCIEGEGFY---TVKEAQTIADNVFSLFVSEEVDKVELVYTKFV 227
            KG ++F      +V+   +  G     ++ E       +   +    +DK+ +V  KF+
Sbjct: 119 SKGVSFFN-SVGGNVV--AQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFI 175

Query: 228 SLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGEL 287
           + +   P I  LLPL               A +D+                    +    
Sbjct: 176 NTMSQVPTISQLLPLP--------------ASDDD--------------------DLKHK 201

Query: 288 SPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLS 347
           S   L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L 
Sbjct: 202 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQ 261

Query: 348 VAYNQERQAKITGELLEIVAGAEAL 372
           + YN+ RQA IT EL EIV+GA A+
Sbjct: 262 LVYNKARQASITQELTEIVSGAAAV 286
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286 Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278 Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272 Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311 Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 100.0
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 100.0
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 100.0
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 100.0
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 100.0
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 100.0
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Back     alignment and structure
Probab=100.00  E-value=7e-87  Score=644.39  Aligned_cols=286  Identities=35%  Similarity=0.555  Sum_probs=260.6

Q ss_pred             ccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEEE
Q 017130           51 CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIV  130 (376)
Q Consensus        51 a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~I  130 (376)
                      |+||+||+||+||+||+|||+||||||+||+||||+++.+.|||++++.+++.++.....  +.+||++..++++++++|
T Consensus         1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~I   78 (286)
T 3oaa_G            1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNL--EYKHPYLEDRDVKRVGYL   78 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT--TTCCSSCSCCCCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCc--cccCcccccCCCCcEEEE
Confidence            589999999999999999999999999999999999999999999999999999977542  346899888888999999


Q ss_pred             EEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHhh
Q 017130          131 IITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSL  210 (376)
Q Consensus       131 VitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~~  210 (376)
                      |||||||||||||+||+|.+.+.++++...|.++.+++||+||.+||++++...+..+.+.++.|++.++..|++.+++.
T Consensus        79 vitSDrGLcG~fN~ni~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~~~  158 (286)
T 3oaa_G           79 VVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQA  158 (286)
T ss_dssp             EECCSCCCSTTHHHHHHHHHHHHHHHHHTTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCHHHHHHHHHHHHHH
T ss_pred             EEeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEeeHHHHHHHHHcCCCeEEeeccccCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988776777899999999999999988876666666778899999999999999999


Q ss_pred             hhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCC
Q 017130          211 FVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL  290 (376)
Q Consensus       211 ~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (376)
                      |.+|++|+|+|+||+|+|+++|+|++++|||+++.+             .++   .                  ...++.
T Consensus       159 ~~~g~~d~v~lvyn~f~s~~~q~~~~~~lLPl~~~~-------------~~~---~------------------~~~~~~  204 (286)
T 3oaa_G          159 YDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASD-------------DDD---L------------------KHKSWD  204 (286)
T ss_dssp             HHTTSCSEEEEEEEEEEETTEEEEEEEECSSCCCCH-------------HHH---S------------------CCCSCC
T ss_pred             HhcCCCCEEEEEEcccccccccceeEEEecCCCccc-------------ccc---c------------------ccCCCC
Confidence            999999999999999999999999999999998621             000   0                  001235


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHh
Q 017130          291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAE  370 (376)
Q Consensus       291 ~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGAe  370 (376)
                      |+|||+++++|+.|+|.||+++||+||+||.||||+|||+||++|||||+|||++|+++|||+||++||+||+|||+||+
T Consensus       205 ~~~Ep~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~  284 (286)
T 3oaa_G          205 YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAA  284 (286)
T ss_dssp             CEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh
Q 017130          371 AL  372 (376)
Q Consensus       371 Al  372 (376)
                      ||
T Consensus       285 Al  286 (286)
T 3oaa_G          285 AV  286 (286)
T ss_dssp             --
T ss_pred             hC
Confidence            96
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G* Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Back     alignment and structure
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d2jdig1272 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma 4e-60
d1fs0g_230 c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subu 1e-49
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  193 bits (490), Expect = 4e-60
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 50/320 (15%)

Query: 53  LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLD 112
           L+++  RL ++KN QKIT++MK+VAAA+  +A+  +  +R +    +             
Sbjct: 3   LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALY---------- 52

Query: 113 DIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKK 172
                +      KK  I+ ++ DRGLCG  + +V K+ ++    L   G +  +I VG K
Sbjct: 53  -EKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDK 111

Query: 173 GNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKS 232
             +      +   +   +  G             +  L    E D+  +++ +F S++  
Sbjct: 112 IRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISY 171

Query: 233 DPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLML 292
                                                      +             + +
Sbjct: 172 KTE---------------------------------------EKPIFSLDTISSAESMSI 192

Query: 293 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQ 352
           ++   A +L       + + I  +L+ES  SE +ARM+AM  A+ NA E+   L++ +N+
Sbjct: 193 YDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 252

Query: 353 ERQAKITGELLEIVAGAEAL 372
            RQA IT EL+EI++GA AL
Sbjct: 253 TRQAVITKELIEIISGAAAL 272
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d2jdig1272 ATP synthase (F1-ATPase), gamma subunit {Cow (Bos 100.0
d1fs0g_230 ATP synthase (F1-ATPase), gamma subunit {Escherich 100.0
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.7e-76  Score=559.80  Aligned_cols=270  Identities=28%  Similarity=0.420  Sum_probs=171.6

Q ss_pred             ccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEEE
Q 017130           51 CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIV  130 (376)
Q Consensus        51 a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~I  130 (376)
                      |+|+|||+||+||++|+|||+||||||+||+||||+++.+.|||+.....++.+.           ++..+++.+++++|
T Consensus         1 A~Lkeik~RI~Sv~~t~kITkAMkmVAasKlrkaq~~~~~~r~Y~~~~~~~~~~~-----------~~~~~~~~~~~l~I   69 (272)
T d2jdig1           1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKA-----------DIKTPEDKKKHLII   69 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------------------CCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHhhccc-----------cchhccccccceeE
Confidence            6899999999999999999999999999999999999999999986655443321           22334556788999


Q ss_pred             EEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceee-EeecCC-CCCCHHHHHHHHHHHH
Q 017130          131 IITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVI-RCIEGE-GFYTVKEAQTIADNVF  208 (376)
Q Consensus       131 VitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~-~~~~~~-~~p~~~~a~~I~~~l~  208 (376)
                      |||||||||||||++|+|++.+.+.++...|.++.++++|+||.+++.+.+...+. .+...+ ..|++..+..+...+.
T Consensus        70 vitSDrGLcG~fN~~iik~~~~~i~~~~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  149 (272)
T d2jdig1          70 GVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELL  149 (272)
T ss_dssp             CBCCSCCCSTTHHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC-
T ss_pred             EEecCCCCCCCccccHHHHHHHHHHHhhccCCceEEEecccchhhhhhhcccceeeeeeeecCCCCchhHHHHHHHHHHH
Confidence            99999999999999999999999988887788888999999999999765533333 333343 4577888877766665


Q ss_pred             hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 017130          209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS  288 (376)
Q Consensus       209 ~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (376)
                      ..  .+++|+|+|+||+|+|.++|.|..++|+|+++.+.                                       ..
T Consensus       150 ~~--~~~~d~v~i~y~~f~~~~~q~p~~~~l~p~~~~~~---------------------------------------~~  188 (272)
T d2jdig1         150 NS--GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISS---------------------------------------AE  188 (272)
T ss_dssp             -----------CCCCCEECSSSCEECC-----------------------------------------------------
T ss_pred             Hh--hhhcceeEEEeecccccccccceeecccccccccc---------------------------------------cc
Confidence            43  47899999999999999999999999999875210                                       01


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130          289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG  368 (376)
Q Consensus       289 ~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG  368 (376)
                      ..+.|||+++++|+.|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|
T Consensus       189 ~~~~~~~~~~~vl~~l~~~yl~~~ly~a~~es~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv~G  268 (272)
T d2jdig1         189 SMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISG  268 (272)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 017130          369 AEAL  372 (376)
Q Consensus       369 AeAl  372 (376)
                      ||||
T Consensus       269 aeAl  272 (272)
T d2jdig1         269 AAAL  272 (272)
T ss_dssp             HHTC
T ss_pred             HhhC
Confidence            9997
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure