Citrus Sinensis ID: 017136

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
ccEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccHHccccccEEEEccccHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHcccccEEEcEEEEccEEEEEEccccHHHHHHHcccccHHHHHcccccEEEEEEEEccccccccEEEEEEEEEEEcccccccccccccc
cccEEEccccHHHcccHHHccccHHHHHHHHHHHHccccEEEEcccccccccHHHHHHccEEEEccccHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccEEEEEccccccEEEccccccccccccEEEEccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccEEEEEEEEcccccccccccccEEEEcccccHHHHHHHHHHccccccccccEEccccEEEEcccHHHHHHHcHHccccHHHHHccccEEEEEEEEEEccccccEEEEEEEEEEEEcccccccccccccc
MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERvsgvnivphfcriedkdisfyndfNIIVLGLDSIEARSYINAVACSFleyetddkpreetikpmvdggtegfkgharviipgvtpcfectiwlfppqvkfplctlaetprtaAHCIEYAHLikwdevhsgksfdpddpehMQWVYSEAVKRAelfgipgvtysltQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTefvkdkdclvcgpgvlieldTSVTLEKFINLLEEHPKLQLAKASVTyrgknlymqappvleemtrsnlslplYDLMDKVAKDILHVtgvtgqsdkktscLRKLRVVFRgvdgvtdmdmagga
mdrievsnlnrqflfrmedvgkpKAEVAAKRVmervsgvnivphfcriedkdisFYNDFNIIVLGLDSIEARSYINAVACSFLeyetddkpreETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLleehpklqlaKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVtgvtgqsdkktsclrklrvvfrgvdgvtdmdmagga
MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKniipaiastnaiisaaCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
***********QFLFRMEDVG***AEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET************VDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG*********HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGV*********
MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTD***AG**
MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTG*********SCLRKLRVVFRGVDGVTDMDMAGGA
*DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVD***********
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MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
O65041454 NEDD8-activating enzyme E yes no 1.0 0.828 0.782 1e-176
Q54QG9442 NEDD8-activating enzyme E yes no 0.869 0.739 0.489 1e-88
Q99MI7462 NEDD8-activating enzyme E yes no 0.872 0.709 0.495 4e-88
Q8C878462 NEDD8-activating enzyme E yes no 0.872 0.709 0.492 6e-88
Q5R4A0463 NEDD8-activating enzyme E yes no 0.872 0.708 0.486 1e-87
Q8TBC4463 NEDD8-activating enzyme E yes no 0.872 0.708 0.489 1e-87
Q7ZVX6462 NEDD8-activating enzyme E yes no 0.872 0.709 0.483 2e-87
Q9V6U8450 NEDD8-activating enzyme E yes no 0.875 0.731 0.497 2e-86
Q19360430 NEDD8-activating enzyme E yes no 0.872 0.762 0.495 2e-86
Q09765444 NEDD8-activating enzyme E yes no 0.845 0.716 0.394 1e-69
>sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2 Back     alignment and function desciption
 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 295/377 (78%), Positives = 325/377 (86%), Gaps = 1/377 (0%)

Query: 1   MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
           MDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I FYNDFN
Sbjct: 78  MDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEFYNDFN 137

Query: 61  IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
           II LGLDSIEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+PGVTP
Sbjct: 138 IIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTP 197

Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY 180
           CFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEHM+WVY
Sbjct: 198 CFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVY 257

Query: 181 SEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 240
            EA++RAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI S CSKTL NY
Sbjct: 258 DEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVNY 317

Query: 241 LTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVT 300
           LTYNG  GL+ +VT+F +D +CLVCGPG+LIELDTSVTL KFI +LE+HPKL L+KASV 
Sbjct: 318 LTYNGGEGLYTEVTKFERDTECLVCGPGILIELDTSVTLSKFIEMLEDHPKLLLSKASVK 377

Query: 301 YRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTG-QSDKKTSCLRKLRV 359
                LYMQAPPVLEE  R  LS PLYDLM +V KD +HV G    ++++K SC  K+RV
Sbjct: 378 QGENTLYMQAPPVLEEFHRPKLSKPLYDLMGRVQKDTIHVFGQRALKNNEKESCTTKVRV 437

Query: 360 VFRGVDGVTDMDMAGGA 376
           VF+G DGV DMD A GA
Sbjct: 438 VFKGADGVADMDTAIGA 454
Catalytic subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q54QG9|UBA3_DICDI NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=1 SV=1 Back     alignment and function description
>sp|Q99MI7|UBA3_RAT NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1 Back     alignment and function description
>sp|Q8C878|UBA3_MOUSE NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4A0|UBA3_PONAB NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2 Back     alignment and function description
>sp|Q8TBC4|UBA3_HUMAN NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2 Back     alignment and function description
>sp|Q7ZVX6|UBA3_DANRE NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1 Back     alignment and function description
>sp|Q9V6U8|UBA3_DROME NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=2 SV=1 Back     alignment and function description
>sp|Q19360|UBA3_CAEEL NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2 Back     alignment and function description
>sp|Q09765|UBA3_SCHPO NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
255552279449 ubiquitin-activating enzyme E1c, putativ 1.0 0.837 0.885 0.0
449432724449 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.837 0.885 0.0
225432556449 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.837 0.888 0.0
224100343449 predicted protein [Populus trichocarpa] 1.0 0.837 0.869 0.0
357480207454 NEDD8-activating enzyme E1 catalytic sub 1.0 0.828 0.853 0.0
224110476449 predicted protein [Populus trichocarpa] 1.0 0.837 0.864 0.0
356521961446 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.843 0.840 0.0
356563478446 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.843 0.829 0.0
297807971453 hypothetical protein ARALYDRAFT_909950 [ 1.0 0.830 0.787 1e-176
148909531448 unknown [Picea sitchensis] 1.0 0.839 0.769 1e-176
>gi|255552279|ref|XP_002517184.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis] gi|223543819|gb|EEF45347.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/376 (88%), Positives = 364/376 (96%)

Query: 1   MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
           MDRIEVSNLNRQFLFR+EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK++ FYNDF+
Sbjct: 74  MDRIEVSNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKELDFYNDFS 133

Query: 61  IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
           IIVLGLDSIEARSYIN VACSFLEY+++D PR++T+KPMVDGGTEGFKGHARVI+PG+TP
Sbjct: 134 IIVLGLDSIEARSYINNVACSFLEYDSEDNPRDDTMKPMVDGGTEGFKGHARVIMPGITP 193

Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY 180
           CFECTIWLFPPQVKFPLCTLAETPRT AHCIEYAHLIKW+EVHSGK+FDPDDPEHM+WVY
Sbjct: 194 CFECTIWLFPPQVKFPLCTLAETPRTPAHCIEYAHLIKWNEVHSGKAFDPDDPEHMKWVY 253

Query: 181 SEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 240
           +EAVKRAELFGI GVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY
Sbjct: 254 TEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 313

Query: 241 LTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVT 300
           LTYNGV GLHIKVTEFVKDKDCL CGPGVLIELDTSV L+KFI+LLEEHPKL L++ASVT
Sbjct: 314 LTYNGVEGLHIKVTEFVKDKDCLACGPGVLIELDTSVALQKFIDLLEEHPKLFLSRASVT 373

Query: 301 YRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVV 360
           +RGKNLYMQAPPVLEEMTRSNLSLPL++LM KV KDI+HVTG+TGQ+ KKTSC+RKLRVV
Sbjct: 374 HRGKNLYMQAPPVLEEMTRSNLSLPLFELMGKVPKDIVHVTGMTGQNGKKTSCVRKLRVV 433

Query: 361 FRGVDGVTDMDMAGGA 376
           F+G++G+TDMDMAGGA
Sbjct: 434 FKGMEGITDMDMAGGA 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449432724|ref|XP_004134149.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus] gi|449515377|ref|XP_004164726.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432556|ref|XP_002280928.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Vitis vinifera] gi|297736997|emb|CBI26198.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100343|ref|XP_002311839.1| predicted protein [Populus trichocarpa] gi|222851659|gb|EEE89206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357480207|ref|XP_003610389.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula] gi|355511444|gb|AES92586.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|224110476|ref|XP_002315531.1| predicted protein [Populus trichocarpa] gi|222864571|gb|EEF01702.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521961|ref|XP_003529618.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|356563478|ref|XP_003549989.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|297807971|ref|XP_002871869.1| hypothetical protein ARALYDRAFT_909950 [Arabidopsis lyrata subsp. lyrata] gi|297317706|gb|EFH48128.1| hypothetical protein ARALYDRAFT_909950 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|148909531|gb|ABR17860.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2182172454 ECR1 "E1 C-terminal related 1" 0.997 0.825 0.743 2.9e-151
FB|FBgn0263697450 Uba3 "Ubiquitin activating enz 0.875 0.731 0.470 1.5e-76
UNIPROTKB|E1BT61463 UBA3 "Uncharacterized protein" 0.872 0.708 0.468 1e-75
RGD|621084462 Uba3 "ubiquitin-like modifier 0.872 0.709 0.462 3.5e-75
UNIPROTKB|Q99MI7462 Uba3 "NEDD8-activating enzyme 0.872 0.709 0.462 3.5e-75
MGI|MGI:1341217462 Uba3 "ubiquitin-like modifier 0.872 0.709 0.459 4.5e-75
UNIPROTKB|Q0P5I7463 UBA3 "Ubiquitin-like modifier 0.872 0.708 0.456 9.3e-75
UNIPROTKB|F8W8D4422 UBA3 "NEDD8-activating enzyme 0.872 0.777 0.456 9.3e-75
UNIPROTKB|Q8TBC4463 UBA3 "NEDD8-activating enzyme 0.872 0.708 0.456 9.3e-75
UNIPROTKB|E2QZL9449 UBA3 "Uncharacterized protein" 0.872 0.730 0.456 1.5e-74
TAIR|locus:2182172 ECR1 "E1 C-terminal related 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
 Identities = 281/378 (74%), Positives = 313/378 (82%)

Query:     1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
             MDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I FYNDFN
Sbjct:    78 MDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEFYNDFN 137

Query:    61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
             II LGLDSIEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+PGVTP
Sbjct:   138 IIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTP 197

Query:   121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY 180
             CFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEHM+WVY
Sbjct:   198 CFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVY 257

Query:   181 SEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNY 240
              EA++RAELFGIPGVTYSLTQGVVK                CALETLKI S CSKTL NY
Sbjct:   258 DEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVNY 317

Query:   241 LTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVT 300
             LTYNG  GL+ +VT+F +D +CLVCGPG+LIELDTSVTL KFI +LE+HPKL L+KASV 
Sbjct:   318 LTYNGGEGLYTEVTKFERDTECLVCGPGILIELDTSVTLSKFIEMLEDHPKLLLSKASVK 377

Query:   301 YRGKN-LYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTG-QSDKKTSCLRKLR 358
              +G+N LYMQAPPVLEE  R  LS PLYDLM +V KD +HV G    ++++K SC  K+R
Sbjct:   378 -QGENTLYMQAPPVLEEFHRPKLSKPLYDLMGRVQKDTIHVFGQRALKNNEKESCTTKVR 436

Query:   359 VVFRGVDGVTDMDMAGGA 376
             VVF+G DGV DMD A GA
Sbjct:   437 VVFKGADGVADMDTAIGA 454
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0008641 "small protein activating enzyme activity" evidence=IEA;IDA
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0045116 "protein neddylation" evidence=IEA;TAS
GO:0019781 "NEDD8 activating enzyme activity" evidence=IDA
GO:0046982 "protein heterodimerization activity" evidence=NAS
FB|FBgn0263697 Uba3 "Ubiquitin activating enzyme 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BT61 UBA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621084 Uba3 "ubiquitin-like modifier activating enzyme 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99MI7 Uba3 "NEDD8-activating enzyme E1 catalytic subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1341217 Uba3 "ubiquitin-like modifier activating enzyme 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5I7 UBA3 "Ubiquitin-like modifier activating enzyme 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F8W8D4 UBA3 "NEDD8-activating enzyme E1 catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TBC4 UBA3 "NEDD8-activating enzyme E1 catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZL9 UBA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65041UBA3_ARATH6, ., 3, ., 2, ., -0.78241.00.8281yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
cd01488291 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1 1e-173
cd01484234 cd01484, E1-2_like, Ubiquitin activating enzyme (E 8e-80
cd01489312 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E 2e-54
cd01490435 cd01490, Ube1_repeat2, Ubiquitin activating enzyme 1e-38
pfam0213466 pfam02134, UBACT, Repeat in ubiquitin-activating ( 6e-28
cd00757228 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA 1e-26
pfam00899134 pfam00899, ThiF, ThiF family 4e-26
pfam0882585 pfam08825, E2_bind, E2 binding domain 1e-25
COG0476254 COG0476, ThiF, Dinucleotide-utilizing enzymes invo 2e-25
TIGR01408 1008 TIGR01408, Ube1, ubiquitin-activating enzyme E1 2e-24
cd01483143 cd01483, E1_enzyme_family, Superfamily of activati 2e-23
TIGR02356202 TIGR02356, adenyl_thiF, thiazole biosynthesis aden 5e-15
PRK08762376 PRK08762, PRK08762, molybdopterin biosynthesis pro 6e-12
PRK08328231 PRK08328, PRK08328, hypothetical protein; Provisio 2e-10
pfam1058544 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e 4e-10
PRK12475338 PRK12475, PRK12475, thiamine/molybdopterin biosynt 5e-10
PRK07688339 PRK07688, PRK07688, thiamine/molybdopterin biosynt 4e-09
PRK05690245 PRK05690, PRK05690, molybdopterin biosynthesis pro 6e-09
PRK08644212 PRK08644, PRK08644, thiamine biosynthesis protein 5e-08
PRK07878392 PRK07878, PRK07878, molybdopterin biosynthesis-lik 2e-07
cd01487174 cd01487, E1_ThiF_like, E1_ThiF_like 9e-07
PRK05600370 PRK05600, PRK05600, thiamine biosynthesis protein 3e-06
TIGR02354200 TIGR02354, thiF_fam2, thiamine biosynthesis protei 3e-06
cd00755231 cd00755, YgdL_like, Family of activating enzymes ( 2e-05
TIGR02355240 TIGR02355, moeB, molybdopterin synthase sulfurylas 5e-05
PRK07411390 PRK07411, PRK07411, hypothetical protein; Validate 6e-05
COG1179263 COG1179, COG1179, Dinucleotide-utilizing enzymes i 7e-05
PRK05597355 PRK05597, PRK05597, molybdopterin biosynthesis pro 8e-05
TIGR014081008 TIGR01408, Ube1, ubiquitin-activating enzyme E1 2e-04
pfam0523777 pfam05237, MoeZ_MoeB, MoeZ/MoeB domain 0.001
cd01492197 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E 0.003
cd01491286 cd01491, Ube1_repeat1, Ubiquitin activating enzyme 0.004
cd01486307 cd01486, Apg7, Apg7 is an E1-like protein, that ac 0.004
>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information 
 Score =  483 bits (1246), Expect = e-173
 Identities = 165/266 (62%), Positives = 198/266 (74%), Gaps = 5/266 (1%)

Query: 1   MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
           MD I+VSNLNRQFLFR +D+GKPKAEVAAK V +RV GVN+ PHF +I+DKD  FY  FN
Sbjct: 31  MDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKDEEFYRQFN 90

Query: 61  IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
           II+ GLDSIEAR +IN    S L YE       E+I P++DGGTEGFKGHARVI+PG+T 
Sbjct: 91  IIICGLDSIEARRWINGTLVSLLLYED-----PESIIPLIDGGTEGFKGHARVILPGITA 145

Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY 180
           C EC++ LFPPQV FPLCT+A TPR   HCIEYA LI+W +       D DDPEH++W+Y
Sbjct: 146 CIECSLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLY 205

Query: 181 SEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 240
            +A++RA  F I GVTYSLTQGVVK IIPA+ASTNAII+AAC LE LKIA+ C + L+NY
Sbjct: 206 QKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNY 265

Query: 241 LTYNGVAGLHIKVTEFVKDKDCLVCG 266
           L YNGV G +    E  + +DC VC 
Sbjct: 266 LMYNGVDGCYTYTFEHERKEDCPVCS 291

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein Back     alignment and domain information
>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA Back     alignment and domain information
>gnl|CDD|216180 pfam00899, ThiF, ThiF family Back     alignment and domain information
>gnl|CDD|192164 pfam08825, E2_bind, E2 binding domain Back     alignment and domain information
>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1 Back     alignment and domain information
>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site Back     alignment and domain information
>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like Back     alignment and domain information
>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E Back     alignment and domain information
>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1 Back     alignment and domain information
>gnl|CDD|113988 pfam05237, MoeZ_MoeB, MoeZ/MoeB domain Back     alignment and domain information
>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information
>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1 Back     alignment and domain information
>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
KOG2015422 consensus NEDD8-activating complex, catalytic comp 100.0
cd01488291 Uba3_RUB Ubiquitin activating enzyme (E1) subunit 100.0
KOG2013603 consensus SMT3/SUMO-activating complex, catalytic 100.0
cd01490435 Ube1_repeat2 Ubiquitin activating enzyme (E1), rep 100.0
TIGR014081008 Ube1 ubiquitin-activating enzyme E1. This model re 100.0
KOG20121013 consensus Ubiquitin activating enzyme UBA1 [Posttr 100.0
cd01489312 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit 100.0
cd01484234 E1-2_like Ubiquitin activating enzyme (E1), repeat 100.0
TIGR02355240 moeB molybdopterin synthase sulfurylase MoeB. This 100.0
PRK07411390 hypothetical protein; Validated 100.0
PRK05690245 molybdopterin biosynthesis protein MoeB; Provision 100.0
PRK05597355 molybdopterin biosynthesis protein MoeB; Validated 100.0
PRK05600370 thiamine biosynthesis protein ThiF; Validated 100.0
PRK08762376 molybdopterin biosynthesis protein MoeB; Validated 100.0
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 100.0
PRK08223287 hypothetical protein; Validated 99.98
PRK07878392 molybdopterin biosynthesis-like protein MoeZ; Vali 99.98
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 99.97
KOG2017427 consensus Molybdopterin synthase sulfurylase [Coen 99.97
cd01491286 Ube1_repeat1 Ubiquitin activating enzyme (E1), rep 99.97
TIGR02356202 adenyl_thiF thiazole biosynthesis adenylyltransfer 99.97
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 99.97
PRK08328231 hypothetical protein; Provisional 99.97
COG0476254 ThiF Dinucleotide-utilizing enzymes involved in mo 99.96
TIGR03603318 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy 99.95
cd01492197 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit 99.93
cd01485198 E1-1_like Ubiquitin activating enzyme (E1), repeat 99.92
TIGR01381664 E1_like_apg7 E1-like protein-activating enzyme Gsa 99.91
PRK14852 989 hypothetical protein; Provisional 99.9
TIGR01408 1008 Ube1 ubiquitin-activating enzyme E1. This model re 99.9
PRK08644212 thiamine biosynthesis protein ThiF; Provisional 99.9
PRK14851 679 hypothetical protein; Provisional 99.89
cd01487174 E1_ThiF_like E1_ThiF_like. Member of superfamily o 99.89
TIGR03736244 PRTRC_ThiF PRTRC system ThiF family protein. A nov 99.88
KOG2336422 consensus Molybdopterin biosynthesis-related prote 99.87
PRK07877 722 hypothetical protein; Provisional 99.86
cd01493425 APPBP1_RUB Ubiquitin activating enzyme (E1) subuni 99.85
KOG2014331 consensus SMT3/SUMO-activating complex, AOS1/RAD31 99.83
cd01486307 Apg7 Apg7 is an E1-like protein, that activates tw 99.83
PF00899135 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a 99.83
cd01483143 E1_enzyme_family Superfamily of activating enzymes 99.82
TIGR02354200 thiF_fam2 thiamine biosynthesis protein ThiF, fami 99.78
PF0213467 UBACT: Repeat in ubiquitin-activating (UBA) protei 99.72
KOG2012 1013 consensus Ubiquitin activating enzyme UBA1 [Posttr 99.71
cd00755231 YgdL_like Family of activating enzymes (E1) of ubi 99.71
PF0882584 E2_bind: E2 binding domain; InterPro: IPR014929 E1 99.69
PRK06153393 hypothetical protein; Provisional 99.67
PRK15116268 sulfur acceptor protein CsdL; Provisional 99.64
COG1179263 Dinucleotide-utilizing enzymes involved in molybdo 99.6
TIGR03693 637 ocin_ThiF_like putative thiazole-containing bacter 99.39
PF1058545 UBA_e1_thiolCys: Ubiquitin-activating enzyme activ 99.3
KOG2016523 consensus NEDD8-activating complex, APP-BP1/UBA5 c 99.22
PF0523784 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T 99.12
KOG2018430 consensus Predicted dinucleotide-utilizing enzyme 99.04
PF09358125 UBA_e1_C: Ubiquitin-activating enzyme e1 C-termina 98.99
PF1473287 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti 98.91
PTZ00245287 ubiquitin activating enzyme; Provisional 98.84
KOG2337669 consensus Ubiquitin activating E1 enzyme-like prot 98.68
TIGR03882193 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr 93.08
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-80  Score=571.95  Aligned_cols=347  Identities=47%  Similarity=0.787  Sum_probs=329.4

Q ss_pred             CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136            1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC   80 (376)
Q Consensus         1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~   80 (376)
                      ||+||+|||||||||+++|+|+|||++||+.++++.|++.|.+|.++|++++.+|+++||+||+++|++++|+|||.+.+
T Consensus        72 mDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~  151 (422)
T KOG2015|consen   72 MDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLV  151 (422)
T ss_pred             ecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136           81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD  160 (376)
Q Consensus        81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~  160 (376)
                      .+..+   |.++...-+|+||||++|++|++++|.|+.|+|++|+...+|++.++|+|||+++|+.|||||+|++.++|+
T Consensus       152 ~l~~~---g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwp  228 (422)
T KOG2015|consen  152 RLKLE---GNYDISSIIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWP  228 (422)
T ss_pred             HHHhc---cCCCccceeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcch
Confidence            76654   556666779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCC-CCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcccc
Q 017136          161 EVHSG-KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN  239 (376)
Q Consensus       161 ~~~~~-~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~  239 (376)
                      ++++. ..++.||++|++||++.+++||.+|+|.++++.++.|+...||||+|+|||+||+.+|.||+|+++....+++|
T Consensus       229 e~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~N  308 (422)
T KOG2015|consen  229 ELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDN  308 (422)
T ss_pred             hhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhh
Confidence            99876 67999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             cccccccccceeeeeecccCCCCcccCC-cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeC-CcEEEecCCcchhHh
Q 017136          240 YLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEM  317 (376)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~C~vC~~-~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~-~~~lY~~~~~~~~~~  317 (376)
                      |++|++.+|.+++++..++.++|++|+. ...+++.+..||+++++++++++  +|+.|.+++. ...||.+++|++++.
T Consensus       309 ym~~n~~eG~ytytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~--~lk~p~~tt~~~~~ly~~~~~~~e~~  386 (422)
T KOG2015|consen  309 YMNYNAEEGIYTYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSF--QLKSPALTTAAGRTLYLSSVPSIEEA  386 (422)
T ss_pred             heeeecccceeEEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhhhhh--ccCCchhhhhhcceEeecCCcHHHHH
Confidence            9999999999999999999999999997 66777888999999999999765  9999998754 479999999999999


Q ss_pred             hhccCCCchHHhhcccccceeeeccccccccCCcceeEEEEEEE
Q 017136          318 TRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVF  361 (376)
Q Consensus       318 ~~~~l~~~l~~lv~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~  361 (376)
                      +++||.++|.+| .+|  .+|      +|||..++.++.|++++
T Consensus       387 t~~nl~~~l~~l-~dg--~~l------~vtd~~~~~~l~~~l~~  421 (422)
T KOG2015|consen  387 TRKNLSQSLKEL-SDG--QEL------VVTDKTLSTALTLQLRE  421 (422)
T ss_pred             hhhhhhhhHHHh-cCC--ceE------EEecccCCcceeEEEec
Confidence            999999999999 778  899      99999999999998875

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>PRK07411 hypothetical protein; Validated Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] Back     alignment and domain information
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family Back     alignment and domain information
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p Back     alignment and domain information
>PRK14852 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>PRK08644 thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>cd01487 E1_ThiF_like E1_ThiF_like Back     alignment and domain information
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein Back     alignment and domain information
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK07877 hypothetical protein; Provisional Back     alignment and domain information
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 Back     alignment and domain information
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively Back     alignment and domain information
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E Back     alignment and domain information
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades Back     alignment and domain information
>PRK06153 hypothetical protein; Provisional Back     alignment and domain information
>PRK15116 sulfur acceptor protein CsdL; Provisional Back     alignment and domain information
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] Back     alignment and domain information
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein Back     alignment and domain information
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein Back     alignment and domain information
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised Back     alignment and domain information
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B Back     alignment and domain information
>PTZ00245 ubiquitin activating enzyme; Provisional Back     alignment and domain information
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
2nvu_B805 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 1e-80
1tt5_B434 Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I 1e-80
3gzn_B463 Structure Of Nedd8-Activating Enzyme In Complex Wit 2e-80
1yov_B444 Insights Into The Ubiquitin Transfer Cascade From T 2e-80
3dbl_B434 Structural Dissection Of A Gating Mechanism Prevent 1e-79
1r4m_B431 Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com 1e-79
3dbr_B434 Structural Dissection Of A Gating Mechanism Prevent 5e-79
3dbh_B434 Structural Dissection Of A Gating Mechanism Prevent 8e-79
3kyd_B 551 Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi 6e-22
3kyc_B 660 Human Sumo E1 Complex With A Sumo1-Amp Mimic Length 6e-22
1y8q_B 640 Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex 5e-21
4ii2_A 1001 Crystal Structure Of Ubiquitin Activating Enzyme 1 1e-17
3cmm_A 1015 Crystal Structure Of The Uba1-Ubiquitin Complex Len 1e-17
1zfn_A253 Structural Analysis Of Escherichia Coli Thif Length 4e-05
1zud_1251 Structure Of This-Thif Protein Complex Length = 251 4e-05
3h5a_A358 Crystal Structure Of E. Coli Mccb Length = 358 4e-04
3h5n_A353 Crystal Structure Of E. Coli Mccb + Atp Length = 35 4e-04
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805 Back     alignment and structure 
Iteration: 1

 Score =  296 bits (759), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/337 (45%), Positives = 210/337 (62%), Gaps = 9/337 (2%)
Query: 1   MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
           MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+
Sbjct: 443 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 502
Query: 61  IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
           IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T 
Sbjct: 503 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 561
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
           C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+Q
Sbjct: 562 CIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 621
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
           W++ ++++RA  + I GVTY LTQGVVK                CA E  KIA+     L
Sbjct: 622 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 681
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
           +NYL +N V GL+    E  + ++C  C      I+   S  L++ ++ L     LQ+  
Sbjct: 682 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 741
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
            ++  T  GKN  LY+Q+   +EE TR NLS  L +L
Sbjct: 742 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 778
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434 Back     alignment and structure
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463 Back     alignment and structure
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444 Back     alignment and structure
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434 Back     alignment and structure
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431 Back     alignment and structure
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434 Back     alignment and structure
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434 Back     alignment and structure
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551 Back     alignment and structure
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660 Back     alignment and structure
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640 Back     alignment and structure
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001 Back     alignment and structure
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015 Back     alignment and structure
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253 Back     alignment and structure
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251 Back     alignment and structure
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358 Back     alignment and structure
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 1e-153
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 1e-136
1y8q_B 640 Anthracycline-, ubiquitin-like 2 activating enzyme 3e-64
1y8q_B640 Anthracycline-, ubiquitin-like 2 activating enzyme 1e-38
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 4e-43
3cmm_A1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 9e-37
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 5e-26
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 3e-32
1y8q_A346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 6e-24
3h5n_A353 MCCB protein; ubiquitin-activating enzyme, microci 3e-22
1y8x_B98 Ubiquitin-activating enzyme E1C; ubiquitin-conjuga 2e-20
3h8v_A292 Ubiquitin-like modifier-activating enzyme 5; rossm 8e-19
1zud_1251 Adenylyltransferase THIF; thiamin, thiazole, prote 1e-16
1jw9_B249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 2e-16
3rui_A340 Ubiquitin-like modifier-activating enzyme ATG7; au 3e-15
3vh1_A598 Ubiquitin-like modifier-activating enzyme ATG7; au 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805 Back     alignment and structure
 Score =  451 bits (1161), Expect = e-153
 Identities = 168/369 (45%), Positives = 231/369 (62%), Gaps = 16/369 (4%)

Query: 1   MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
           MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+
Sbjct: 443 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 502

Query: 61  IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
           IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T 
Sbjct: 503 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 561

Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
           C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+Q
Sbjct: 562 CIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 621

Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL 237
           W++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+     L
Sbjct: 622 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 681

Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
           +NYL +N V GL+    E  + ++C  C      I+   S  L++ ++ L     LQ+  
Sbjct: 682 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 741

Query: 297 ASVT----YRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTS 352
            ++T     + + LY+Q+   +EE TR NLS  L +L   V    L V       D  T 
Sbjct: 742 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL-GLVDGQELAVA------DVTTP 794

Query: 353 CLRKLRVVF 361
                ++ F
Sbjct: 795 QTVLFKLHF 803
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434 Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531 Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346 Back     alignment and structure
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A Length = 98 Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292 Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251 Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249 Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340 Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 100.0
1y8q_B640 Anthracycline-, ubiquitin-like 2 activating enzyme 100.0
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 100.0
3cmm_A1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 100.0
1y8q_A346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 100.0
3h8v_A292 Ubiquitin-like modifier-activating enzyme 5; rossm 100.0
1zud_1251 Adenylyltransferase THIF; thiamin, thiazole, prote 100.0
1jw9_B249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 99.97
3h5n_A353 MCCB protein; ubiquitin-activating enzyme, microci 99.97
3rui_A340 Ubiquitin-like modifier-activating enzyme ATG7; au 99.97
4gsl_A615 Ubiquitin-like modifier-activating enzyme ATG7; ub 99.96
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 99.95
3vh1_A598 Ubiquitin-like modifier-activating enzyme ATG7; au 99.95
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 99.94
1y8x_B98 Ubiquitin-activating enzyme E1C; ubiquitin-conjuga 99.68
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 99.6
3onh_A127 Ubiquitin-activating enzyme E1-like; ligase, SUMO 97.31
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 89.26
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Back     alignment and structure
Probab=100.00  E-value=3.9e-72  Score=561.21  Aligned_cols=353  Identities=46%  Similarity=0.808  Sum_probs=313.9

Q ss_pred             CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136            1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC   80 (376)
Q Consensus         1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~   80 (376)
                      +|+||.|||||||||+++|||++||++|+++++++||+++|+++..++.+.+.++++++|+||+|+||+++|+++|++|+
T Consensus        72 ~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~  151 (434)
T 1tt5_B           72 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI  151 (434)
T ss_dssp             CCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHH
T ss_pred             CCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999988778899999999999999999999999998


Q ss_pred             hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136           81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD  160 (376)
Q Consensus        81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~  160 (376)
                      .+.++.+ |++....++|||++|+.|+.|+++++.|+.++||+|.++..|++..+|.|+++++|+.|+|||+||+.+.|+
T Consensus       152 ~~~~~~~-g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~  230 (434)
T 1tt5_B          152 SLLNYED-GVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWP  230 (434)
T ss_dssp             HTCCBSS-SCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHH
T ss_pred             Hhhhccc-cccccccCCcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHh
Confidence            6544432 444445689999999999999999999999999999988778889999999999999999999999999999


Q ss_pred             hccCC---CCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc
Q 017136          161 EVHSG---KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL  237 (376)
Q Consensus       161 ~~~~~---~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l  237 (376)
                      ..++.   ..||+|+++|++|+++.+++||..|||.+.++..+++++++|+|+|+||+|||||++++|++|+|+|.+.++
T Consensus       231 ~~~~~~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l  310 (434)
T 1tt5_B          231 KEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL  310 (434)
T ss_dssp             HSCTTCTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCC
T ss_pred             hhcccccccccCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            87743   489999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cccccccccccceeeeeecccCCCCcccCC-cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEe----CCcEEEecCCc
Q 017136          238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPP  312 (376)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~-~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~----~~~~lY~~~~~  312 (376)
                      ++++.|++..+.+...+.++++|+|++|+. |..+.++++.||++|++.|+++++++++.++|++    ++++||+++++
T Consensus       311 ~~~l~~d~~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~  390 (434)
T 1tt5_B          311 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT  390 (434)
T ss_dssp             CSEEEEECSBSCEEEEECCCCCTTCTTTCSSCBCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCT
T ss_pred             CceEEEEcCCCceeEEEeccCCCCCCccCCCCceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCc
Confidence            999999999888777788889999999998 8888888888999999999999888999999988    58999999988


Q ss_pred             chhHhhhccCCCchHHh-hcccccceeeeccccccccCCcceeEEEEEEEe
Q 017136          313 VLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR  362 (376)
Q Consensus       313 ~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  362 (376)
                      ++++++++||+|+|+|| +.+|  ++|      .|+|++.+.+++++|+|+
T Consensus       391 ~~~~~~~~~l~~~l~~l~~~~g--~~~------~v~d~~~~~~~~~~~~~~  433 (434)
T 1tt5_B          391 SIEERTRPNLSKTLKELGLVDG--QEL------AVADVTTPQTVLFKLHFT  433 (434)
T ss_dssp             TTTTTSCC-CCC-----CCCSS--CCE------ECCCTTCSSCCEEC----
T ss_pred             chhhhhHhhhcCCHHHcCCCCC--CEE------EEECCCCcccEEEEEEec
Confidence            89989999999999999 9999  899      999999999999999986
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Back     alignment and structure
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1yovb1426 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T 1e-113
d1yova1 529 c.111.1.2 (A:6-534) Amyloid beta precursor protein 5e-35
d1y8xb192 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [ 7e-21
d1jw9b_247 c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr 0.001
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  333 bits (856), Expect = e-113
 Identities = 163/352 (46%), Positives = 223/352 (63%), Gaps = 10/352 (2%)

Query: 1   MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
           MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+
Sbjct: 69  MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 128

Query: 61  IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
           IIV GLDSI AR +IN      L    D      +I P++DGGTEGFKG+ARVI+PG+T 
Sbjct: 129 IIVCGLDSIIARRWING-MLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 187

Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHS---GKSFDPDDPEHMQ 177
           C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+Q
Sbjct: 188 CIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 247

Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL 237
           W++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+     L
Sbjct: 248 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 307

Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
           +NYL +N V GL+    E  + ++C  C      I+   S  L++ ++ L     LQ+  
Sbjct: 308 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 367

Query: 297 ASVT----YRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVT 344
            ++T     + + LY+Q+   +EE TR NLS  L +L        L V  VT
Sbjct: 368 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDG-QELAVADVT 418
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1yovb1426 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jw9b_247 Molybdenum cofactor biosynthesis protein MoeB {Esc 99.98
d1yova1 529 Amyloid beta precursor protein-binding protein 1, 99.91
d1y8xb192 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 99.61
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-77  Score=594.60  Aligned_cols=349  Identities=47%  Similarity=0.826  Sum_probs=301.7

Q ss_pred             CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136            1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC   80 (376)
Q Consensus         1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~   80 (376)
                      +|+||+|||||||||+++|||++||++|+++++++||+++|+++..++.+.+.+|+++||+||+|+||+++|+++|++|+
T Consensus        69 ~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~  148 (426)
T d1yovb1          69 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI  148 (426)
T ss_dssp             CCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHH
T ss_pred             CCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999998888999999999999999999999999998


Q ss_pred             hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136           81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD  160 (376)
Q Consensus        81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~  160 (376)
                      .+.++. .+.+..+.++|||+||+.|+.|+++++.|+.|+||+|.++..|+++++|.|||+++|+.|+|||+||+.+.|.
T Consensus       149 ~l~k~~-~~~~~~~~~iPlI~gg~~G~~G~~~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~  227 (426)
T d1yovb1         149 SLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWP  227 (426)
T ss_dssp             HTCCEE-TTEECGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHH
T ss_pred             Hhhccc-ccccccccCCceEEeEEeeeEEEEEEECCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhccc
Confidence            765542 2233346789999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             hcc---CCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc
Q 017136          161 EVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL  237 (376)
Q Consensus       161 ~~~---~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l  237 (376)
                      +.+   ....||+||++|++|+++++++||.+|+|++.+++.+++++++||||||||||||||++++|++|+++++..++
T Consensus       228 ~~~~~~~~~~~d~dd~~~i~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~  307 (426)
T d1yovb1         228 KEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL  307 (426)
T ss_dssp             HSCTTSTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccc
Confidence            876   46789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccceeeeeecccCCCCcccCC-cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEe----CCcEEEecCCc
Q 017136          238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPP  312 (376)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~-~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~----~~~~lY~~~~~  312 (376)
                      +++++|++..+.+...++++|+|+|++|+. +..+.+++++||++|++.+++++++++..|++..    ++++||+.+++
T Consensus       308 ~n~~~~~~~~~~~~~~~~~~k~~~C~vC~~~~~~~~~~~~~tL~~li~~~~~~~~l~~~~p~~~~~~~~~~~~Ly~~~~~  387 (426)
T d1yovb1         308 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT  387 (426)
T ss_dssp             CSEEEEECSBSCEEEEECCCCCTTCTTTCSSCBCCC------CTTHHHHTTTCSSSCCSSCCEECC-----CEECCCC--
T ss_pred             cceEEEecCCCceEeeeeccCCCCCCeeCCceEEEEECCCCCHHHHHHHHHHhhCcCccCCcceeeecCCCcEEEecCCc
Confidence            999999999999888889999999999998 7677777889999999999999888888887743    57899999999


Q ss_pred             chhHhhhccCCCchHHh-hcccccceeeeccccccccCCcceeEEEE
Q 017136          313 VLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDKKTSCLRKLR  358 (376)
Q Consensus       313 ~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~~d~~~~~~~~~~  358 (376)
                      ++++++++||+|+|+|| +.+|  ++|      .|+|++.|.++.|+
T Consensus       388 ~le~~~~~nl~k~L~eL~~~~g--~~l------~v~D~~~~~~~~~~  426 (426)
T d1yovb1         388 SIEERTRPNLSKTLKELGLVDG--QEL------AVADVTTPQTVLFK  426 (426)
T ss_dssp             --CGGGSTTC----------------C------BCCBTTBSSCCBBC
T ss_pred             hhhHHhhhhhcCCHHHhCCCCC--CEE------EEECCCCCcceecC
Confidence            99999999999999999 9999  899      99999999877653
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure